|
Name |
|
Date |
Size |
#Lines |
LOC |
| .. | | 15-Mar-2021 | - |
| .gitignore | H A D | 15-Mar-2021 | 11 | 3 | 2 |
| 4na_ascii.c | H A D | 15-Mar-2021 | 3.2 KiB | 96 | 19 |
| 4na_ascii.h | H A D | 15-Mar-2021 | 1.5 KiB | 45 | 13 |
| Makefile | H A D | 15-Mar-2021 | 2.9 KiB | 134 | 75 |
| cg_tools.c | H A D | 15-Mar-2021 | 66.5 KiB | 1,724 | 1,179 |
| cg_tools.h | H A D | 15-Mar-2021 | 3.9 KiB | 138 | 81 |
| cmdline_cmn.c | H A D | 15-Mar-2021 | 20.5 KiB | 712 | 554 |
| cmdline_cmn.h | H A D | 15-Mar-2021 | 4 KiB | 151 | 90 |
| debug.h | H A D | 15-Mar-2021 | 1.5 KiB | 35 | 6 |
| dyn_string.c | H A D | 15-Mar-2021 | 5.3 KiB | 207 | 151 |
| dyn_string.h | H A D | 15-Mar-2021 | 2.1 KiB | 56 | 22 |
| inputfiles.c | H A D | 15-Mar-2021 | 10.5 KiB | 364 | 298 |
| inputfiles.h | H A D | 15-Mar-2021 | 2.6 KiB | 100 | 48 |
| make_opt.pl | H A D | 03-May-2022 | 280 | 14 | 10 |
| matecache.c | H A D | 15-Mar-2021 | 14.8 KiB | 440 | 381 |
| matecache.h | H A D | 15-Mar-2021 | 3.7 KiB | 120 | 55 |
| md_flag.c | H A D | 15-Mar-2021 | 6.1 KiB | 269 | 219 |
| md_flag.h | H A D | 15-Mar-2021 | 1.6 KiB | 49 | 17 |
| out_redir.c | H A D | 15-Mar-2021 | 3.8 KiB | 121 | 80 |
| out_redir.h | H A D | 15-Mar-2021 | 1.8 KiB | 65 | 28 |
| perf_log.c | H A D | 15-Mar-2021 | 7.6 KiB | 273 | 206 |
| perf_log.h | H A D | 15-Mar-2021 | 1.8 KiB | 53 | 17 |
| pileup_counters.c | H A D | 15-Mar-2021 | 12.4 KiB | 448 | 326 |
| pileup_counters.h | H A D | 15-Mar-2021 | 1.5 KiB | 42 | 11 |
| pileup_indels.c | H A D | 15-Mar-2021 | 3.2 KiB | 121 | 63 |
| pileup_indels.h | H A D | 15-Mar-2021 | 1.4 KiB | 41 | 10 |
| pileup_index.c | H A D | 15-Mar-2021 | 3.5 KiB | 123 | 74 |
| pileup_index.h | H A D | 15-Mar-2021 | 1.4 KiB | 41 | 10 |
| pileup_options.h | H A D | 15-Mar-2021 | 2 KiB | 63 | 29 |
| pileup_stat.c | H A D | 15-Mar-2021 | 10.8 KiB | 391 | 281 |
| pileup_stat.h | H A D | 15-Mar-2021 | 1.4 KiB | 41 | 10 |
| pileup_v2.c | H A D | 15-Mar-2021 | 11.8 KiB | 383 | 199 |
| pileup_v2.h | H A D | 15-Mar-2021 | 1.4 KiB | 41 | 10 |
| pileup_varcount.c | H A D | 15-Mar-2021 | 4.1 KiB | 140 | 70 |
| pileup_varcount.h | H A D | 15-Mar-2021 | 1.4 KiB | 41 | 10 |
| read_fkt.c | H A D | 15-Mar-2021 | 23.9 KiB | 719 | 614 |
| read_fkt.h | H A D | 15-Mar-2021 | 4.5 KiB | 83 | 41 |
| ref_regions.c | H A D | 15-Mar-2021 | 22.9 KiB | 826 | 631 |
| ref_regions.h | H A D | 15-Mar-2021 | 2.8 KiB | 72 | 33 |
| ref_walker.c | H A D | 15-Mar-2021 | 34.8 KiB | 1,030 | 799 |
| ref_walker.h | H A D | 15-Mar-2021 | 4.4 KiB | 148 | 75 |
| ref_walker_0.c | H A D | 15-Mar-2021 | 7.8 KiB | 233 | 190 |
| ref_walker_0.h | H A D | 15-Mar-2021 | 4.2 KiB | 108 | 59 |
| report_deletes.c | H A D | 15-Mar-2021 | 8.6 KiB | 260 | 216 |
| report_deletes.h | H A D | 15-Mar-2021 | 1.4 KiB | 42 | 12 |
| reref.c | H A D | 15-Mar-2021 | 16.5 KiB | 551 | 440 |
| reref.h | H A D | 15-Mar-2021 | 1.4 KiB | 44 | 13 |
| rna_splice_log.c | H A D | 15-Mar-2021 | 10.6 KiB | 375 | 287 |
| rna_splice_log.h | H A D | 15-Mar-2021 | 2.7 KiB | 88 | 40 |
| sam-aligned.c | H A D | 15-Mar-2021 | 94.2 KiB | 2,409 | 1,880 |
| sam-aligned.h | H A D | 15-Mar-2021 | 1.6 KiB | 47 | 16 |
| sam-dump-opts.c | H A D | 15-Mar-2021 | 51.7 KiB | 1,683 | 1,332 |
| sam-dump-opts.h | H A D | 15-Mar-2021 | 9.1 KiB | 308 | 192 |
| sam-dump.c | H A D | 15-Mar-2021 | 161.2 KiB | 4,906 | 4,201 |
| sam-dump3.c | H A D | 15-Mar-2021 | 24.5 KiB | 568 | 430 |
| sam-hdr.c | H A D | 15-Mar-2021 | 23 KiB | 729 | 613 |
| sam-hdr.h | H A D | 15-Mar-2021 | 1.4 KiB | 42 | 12 |
| sam-hdr1.c | H A D | 15-Mar-2021 | 28.6 KiB | 895 | 746 |
| sam-hdr1.h | H A D | 15-Mar-2021 | 1.5 KiB | 43 | 13 |
| sam-unaligned.c | H A D | 15-Mar-2021 | 63.3 KiB | 1,628 | 1,302 |
| sam-unaligned.h | H A D | 15-Mar-2021 | 1.6 KiB | 45 | 15 |
| splitfastq.pl | H A D | 03-May-2022 | 1,017 | 46 | 33 |
| sra-pileup.c | H A D | 15-Mar-2021 | 56.1 KiB | 1,674 | 1,284 |
| walk_debug.c | H A D | 15-Mar-2021 | 5.2 KiB | 148 | 96 |
| walk_debug.h | H A D | 15-Mar-2021 | 1.5 KiB | 43 | 11 |
| writer.c | H A D | 15-Mar-2021 | 4.3 KiB | 138 | 102 |
| writer.h | H A D | 15-Mar-2021 | 1.4 KiB | 33 | 4 |