Searched refs:ReadlessAssemblyRegion (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/engine/ |
| H A D | ReadlessAssemblyRegion.java | 11 public class ReadlessAssemblyRegion extends ShardBoundary { class
16 public ReadlessAssemblyRegion(final AssemblyRegion assemblyRegion) { in ReadlessAssemblyRegion() method in ReadlessAssemblyRegion
21 …private ReadlessAssemblyRegion(final SimpleInterval activeRegionLoc, SimpleInterval paddedSpan, fi… in ReadlessAssemblyRegion() method in ReadlessAssemblyRegion
32 return padded ? this : new ReadlessAssemblyRegion(interval, paddedSpan, isActive, true); in paddedShardBoundary()
40 ReadlessAssemblyRegion that = (ReadlessAssemblyRegion) o; in equals()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/engine/spark/ |
| H A D | FindAssemblyRegionsSpark.java | 151 JavaRDD<ReadlessAssemblyRegion> readlessAssemblyRegions = contigToGroupedStates in getAssemblyRegionsStrict()
201 …MapFunction<Tuple2<String, Iterable<ActivityProfileStateRange>>, ReadlessAssemblyRegion> getReadle…
204 …atMapFunction<Tuple2<String, Iterable<ActivityProfileStateRange>>, ReadlessAssemblyRegion>) iter ->
213 …opagationDistance), new com.google.common.base.Function<AssemblyRegion, ReadlessAssemblyRegion>() {
216 public ReadlessAssemblyRegion apply(@Nullable AssemblyRegion input) {
217 return new ReadlessAssemblyRegion(input);
228 …ReadlessAssemblyRegion readlessAssemblyRegion = (ReadlessAssemblyRegion) ((ShardBoundaryShard<GATK…
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