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Searched refs:SINGLE_EXTEND_MEDQ (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Ddynprog.h67 #define SINGLE_EXTEND_MEDQ -2 macro
H A Ddynprog.c127 …FULLMATCH*matches + MISMATCH_MEDQ*mismatches + SINGLE_OPEN_MEDQ*qopens + SINGLE_EXTEND_MEDQ*qindels in Dynprog_score()
128 + SINGLE_OPEN_MEDQ*topens + SINGLE_EXTEND_MEDQ*tindels; in Dynprog_score()
H A Ddynprog_single.c467 extend = SINGLE_EXTEND_MEDQ; in Dynprog_single_gap()
H A Ddynprog_genome.c3363 extend = SINGLE_EXTEND_MEDQ; in Dynprog_genome_gap()