Searched refs:S_adjust (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ |
| H A D | cg_tools.c | 145 unsigned S_adjust; member
159 tmp->S_adjust = 0; in CIGAR_to_CG_Ops()
193 case 'S' : tmp->S_adjust += opLen; in CIGAR_to_CG_Ops()
478 int const adjusted = input->edit_dist + tmp->S_adjust - tmp->CG_adjust; in adjust_cigar()
480 …re: %u, after: %u(+%u-%u)\n", input->edit_dist, output->edit_dist, tmp->S_adjust, tmp->CG_adjust )… in adjust_cigar()
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| H A D | sam-dump.c | 1928 unsigned *const S_adjust, in CIGAR_to_CG_Ops() argument
1939 *S_adjust = 0; in CIGAR_to_CG_Ops()
1968 *S_adjust += opLen; in CIGAR_to_CG_Ops()
2244 unsigned S_adjust = 0; in GenerateCGData() local
2252 &S_adjust, &CG_adjust, read, reversed, &has_ref_offset_type ); in GenerateCGData()
2379 int const adjusted = edit_distance + S_adjust - CG_adjust; in GenerateCGData()
2382 …, ( "NM: before: %u, after: %u(+%u-%u)\n", edit_distance, newEditDistance, S_adjust, CG_adjust ) ); in GenerateCGData()
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