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Searched refs:Stage3_chrstart (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dchimera.c145 acceptor_strand,acceptor_chr,Stage3_chrstart(this->to)); in Chimera_print_sam_tag()
362 Stage3_chrstart(from),Stage3_chrend(from), in Chimera_local_join_p()
364 Stage3_chrstart(to),Stage3_chrend(to))); in Chimera_local_join_p()
438 Stage3_chrstart(from),Stage3_chrend(from), in Chimera_distant_join_p()
440 Stage3_chrstart(to),Stage3_chrend(to))); in Chimera_distant_join_p()
H A Dgmap.c1987 Stage3_chrstart(from),Stage3_chrend(from), in middle_piece_local_p()
1989 Stage3_chrstart(to),Stage3_chrend(to))); in middle_piece_local_p()
2020 if (Stage3_chrend(from) < Stage3_chrstart(to) && in middle_piece_local_p()
2023 Stage3_chrend(from),Stage3_chrstart(to), in middle_piece_local_p()
2030 *chrend = Stage3_chrstart(to); in middle_piece_local_p()
2035 Stage3_chrend(from),Stage3_chrstart(to))); in middle_piece_local_p()
2043 Stage3_chrstart(to),Stage3_chrend(from), in middle_piece_local_p()
2049 *chrstart = Stage3_chrstart(to); in middle_piece_local_p()
2055 Stage3_chrend(from),Stage3_chrstart(to))); in middle_piece_local_p()
2067 Stage3_chrstart(from),Stage3_chrend(from), in middle_piece_chimera_p()
[all …]
H A Dstage3.h148 Stage3_chrstart (T this);
H A Dstage3.c785 Stage3_chrstart (T this) { in Stage3_chrstart() function
6020 chrnum,Stage3_chrstart(new),Stage3_chrend(new),new->goodness,new->matches,new->npairs)); in Stage3_new()