| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/api/ |
| H A D | query_data.hpp | 123 typedef list< CRef<objects::CSeq_loc> > TSeqLocs; typedef in IRemoteQueryData
125 virtual TSeqLocs GetSeqLocs() = 0;
131 TSeqLocs m_SeqLocs;
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/api/ |
| H A D | query_data.hpp | 123 typedef list< CRef<objects::CSeq_loc> > TSeqLocs; typedef in IRemoteQueryData
125 virtual TSeqLocs GetSeqLocs() = 0;
131 TSeqLocs m_SeqLocs;
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
| H A D | objmgrfree_query_data.cpp | 160 static IRemoteQueryData::TSeqLocs
166 IRemoteQueryData::TSeqLocs retval; in s_ConstBioseqSetToSeqLocs()
190 virtual TSeqLocs GetSeqLocs();
217 IRemoteQueryData::TSeqLocs
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| H A D | objmgr_query_data.cpp | 118 static IRemoteQueryData::TSeqLocs
121 IRemoteQueryData::TSeqLocs retval; in s_TSeqLocVectorToTSeqLocs()
134 static IRemoteQueryData::TSeqLocs
137 IRemoteQueryData::TSeqLocs retval; in s_QueryVectorToTSeqLocs()
276 virtual TSeqLocs GetSeqLocs();
309 IRemoteQueryData::TSeqLocs
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| H A D | remote_search.cpp | 116 IRemoteQueryData::TSeqLocs sll = m_Queries->GetSeqLocs(); in x_RemoteBlast()
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| H A D | search_strategy.cpp | 573 IRemoteQueryData::TSeqLocs seqloc_list = remote_query->GetSeqLocs(); in x_Process_Query()
609 ITERATE(IRemoteQueryData::TSeqLocs, itr, seqloc_list) in x_Process_Query()
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| H A D | remote_blast.cpp | 1311 IRemoteQueryData::TSeqLocs sll = Q->GetSeqLocs(); in x_InitQueries()
1344 ITERATE(IRemoteQueryData::TSeqLocs, itr, sll) { in x_InitQueries()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
| H A D | objmgrfree_query_data.cpp | 160 static IRemoteQueryData::TSeqLocs
166 IRemoteQueryData::TSeqLocs retval; in s_ConstBioseqSetToSeqLocs()
190 virtual TSeqLocs GetSeqLocs();
217 IRemoteQueryData::TSeqLocs
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| H A D | objmgr_query_data.cpp | 118 static IRemoteQueryData::TSeqLocs
121 IRemoteQueryData::TSeqLocs retval; in s_TSeqLocVectorToTSeqLocs()
134 static IRemoteQueryData::TSeqLocs
137 IRemoteQueryData::TSeqLocs retval; in s_QueryVectorToTSeqLocs()
276 virtual TSeqLocs GetSeqLocs();
309 IRemoteQueryData::TSeqLocs
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| H A D | remote_search.cpp | 116 IRemoteQueryData::TSeqLocs sll = m_Queries->GetSeqLocs(); in x_RemoteBlast()
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| H A D | search_strategy.cpp | 573 IRemoteQueryData::TSeqLocs seqloc_list = remote_query->GetSeqLocs(); in x_Process_Query()
609 ITERATE(IRemoteQueryData::TSeqLocs, itr, seqloc_list) in x_Process_Query()
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| H A D | remote_blast.cpp | 1311 IRemoteQueryData::TSeqLocs sll = Q->GetSeqLocs(); in x_InitQueries()
1344 ITERATE(IRemoteQueryData::TSeqLocs, itr, sll) { in x_InitQueries()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | querydata_unit_test.cpp | 77 const IRemoteQueryData::TSeqLocs& seqlocs);
88 void x_Init(const IRemoteQueryData::TSeqLocs* seqlocs = 0);
133 const IRemoteQueryData::TSeqLocs& seqlocs) in CSequenceDataTester()
141 CSequenceDataTester::x_Init(const IRemoteQueryData::TSeqLocs* seqlocs) in x_Init()
170 ITERATE(IRemoteQueryData::TSeqLocs, itr, *seqlocs) { in x_Init()
372 IRemoteQueryData::TSeqLocs seqlocs = queries->GetSeqLocs(); in x_TestSingleSequence_Remote()
373 IRemoteQueryData::TSeqLocs::const_iterator itr = seqlocs.begin(); in x_TestSingleSequence_Remote()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | querydata_unit_test.cpp | 77 const IRemoteQueryData::TSeqLocs& seqlocs);
88 void x_Init(const IRemoteQueryData::TSeqLocs* seqlocs = 0);
133 const IRemoteQueryData::TSeqLocs& seqlocs) in CSequenceDataTester()
141 CSequenceDataTester::x_Init(const IRemoteQueryData::TSeqLocs* seqlocs) in x_Init()
170 ITERATE(IRemoteQueryData::TSeqLocs, itr, *seqlocs) { in x_Init()
372 IRemoteQueryData::TSeqLocs seqlocs = queries->GetSeqLocs(); in x_TestSingleSequence_Remote()
373 IRemoteQueryData::TSeqLocs::const_iterator itr = seqlocs.begin(); in x_TestSingleSequence_Remote()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seq/unit_test/ |
| H A D | seq_loc_unit_test.cpp | 1360 typedef vector< CRef<CSeq_loc> > TSeqLocs; typedef
1367 CTotalRangeThread(const TSeqLocs& locs, CAtomicCounter& start_counter) in CTotalRangeThread()
1398 const TSeqLocs& m_Locs;
1408 TSeqLocs ll; in BOOST_AUTO_TEST_CASE()
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