Home
last modified time | relevance | path

Searched refs:VcfMeta (Results 1 – 3 of 3) sorted by relevance

/dports/biology/stacks/stacks-2.4/src/
H A DVcf.cc5 const VcfMeta VcfMeta::predefs::info_AD ("INFO","<ID=AD,Number=R,Type=Integer,Description=\"Total D…
6 const VcfMeta VcfMeta::predefs::info_AF ("INFO","<ID=AF,Number=A,Type=Float,Description=\"Allele Fr…
7 const VcfMeta VcfMeta::predefs::info_DP ("INFO","<ID=DP,Number=1,Type=Integer,Description=\"Total D…
10 const VcfMeta VcfMeta::predefs::format_AD ("FORMAT","<ID=AD,Number=R,Type=Integer,Description=\"All…
11 const VcfMeta VcfMeta::predefs::format_DP ("FORMAT","<ID=DP,Number=1,Type=Integer,Description=\"Rea…
15 const VcfMeta VcfMeta::predefs::format_GT ("FORMAT","<ID=GT,Number=1,Type=String,Description=\"Geno…
17 const VcfMeta VcfMeta::predefs::info_loc_strand (
31 add_meta(VcfMeta("fileDate", date)); in add_std_meta()
35 add_meta(VcfMeta::predefs::info_AD); in add_std_meta()
36 add_meta(VcfMeta::predefs::info_AF); in add_std_meta()
[all …]
H A DVcf.h33 class VcfMeta {
43 static const VcfMeta info_AD;
44 static const VcfMeta info_AF;
45 static const VcfMeta info_DP;
46 static const VcfMeta info_NS;
48 static const VcfMeta format_AD;
49 static const VcfMeta format_DP;
50 static const VcfMeta format_GL;
51 static const VcfMeta format_GQ;
67 vector<VcfMeta> meta_;
[all …]
H A Dexport_formats.cc2270 header.add_meta(VcfMeta::predefs::info_loc_strand); in open()
2365 header.add_meta(VcfMeta::predefs::info_loc_strand); in open()