| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/src/hmmer2/ |
| H A D | plan7.cpp | 475 hmm->xsc[XTN][LOOP] = Prob2Score(hmm->xt[XTN][LOOP], hmm->p1); in P7Logoddsify()
476 hmm->xsc[XTN][MOVE] = Prob2Score(hmm->xt[XTN][MOVE], 1.0); in P7Logoddsify()
611 hmm->xt[XTN][MOVE] = 1.; /* disallow N-terminal tail */ in Plan7NakedConfig()
612 hmm->xt[XTN][LOOP] = 0.; in Plan7NakedConfig()
644 hmm->xt[XTN][MOVE] = 1. - hmm->p1; /* allow N-terminal tail */ in Plan7GlobalConfig()
645 hmm->xt[XTN][LOOP] = hmm->p1; in Plan7GlobalConfig()
673 hmm->xt[XTN][MOVE] = 1.-hmm->p1; /* allow N-terminal tail */ in Plan7LSConfig()
674 hmm->xt[XTN][LOOP] = hmm->p1; in Plan7LSConfig()
723 hmm->xt[XTN][MOVE] = 1-hmm->p1; /* allow N-terminal tail */ in Plan7SWConfig()
724 hmm->xt[XTN][LOOP] = hmm->p1; in Plan7SWConfig()
[all …]
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| H A D | fast_algorithms.cpp | 86 xmx[0][XMB] = hmm->xsc[XTN][MOVE]; /* S->N->B, no N-tail */ in P7Viterbi()
148 if ((sc = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]) > -INFTY) in P7Viterbi()
167 if ((sc = xmx[i][XMN] + hmm->xsc[XTN][MOVE]) > -INFTY) in P7Viterbi()
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| H A D | core_algorithms.cpp | 509 xmx[i][XMN] = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]; in P7Forward()
518 xmx[i][XMB] = ILogsum(xmx[i][XMN] + hmm->xsc[XTN][MOVE], in P7Forward()
627 if ((sc = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]) > -INFTY) in P7Viterbi()
644 if ((sc = xmx[i][XMN] + hmm->xsc[XTN][MOVE]) > -INFTY) in P7Viterbi()
823 else if (xmx[i][XMB] == xmx[i][XMN] + hmm->xsc[XTN][MOVE]) in P7ViterbiTrace()
1223 if ((sc = xmx[prv][XMN] + hmm->xsc[XTN][LOOP]) > -INFTY) in P7ParsingViterbi()
1579 xmx[1][XMN] = xmx[0][XMN] + hmm->xsc[XTN][LOOP]; in Plan7ESTViterbi()
1580 xmx[1][XMB] = xmx[1][XMN] + hmm->xsc[XTN][MOVE]; in Plan7ESTViterbi()
1665 xmx[i][XMN] = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]; in Plan7ESTViterbi()
1676 xmx[i][XMB] = xmx[i][XMN] + hmm->xsc[XTN][MOVE]; in Plan7ESTViterbi()
[all …]
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| /dports/biology/wise/wise2.4.1/src/HMMer2/ |
| H A D | plan7.c | 488 hmm->xsc[XTN][LOOP] = Prob2Score(hmm->xt[XTN][LOOP], hmm->p1); in P7Logoddsify()
489 hmm->xsc[XTN][MOVE] = Prob2Score(hmm->xt[XTN][MOVE], 1.0); in P7Logoddsify()
569 hmm->xt[XTN][MOVE] = 1.; /* disallow N-terminal tail */ in Plan7NakedConfig()
570 hmm->xt[XTN][LOOP] = 0.; in Plan7NakedConfig()
602 hmm->xt[XTN][LOOP] = hmm->p1; in Plan7GlobalConfig()
630 hmm->xt[XTN][LOOP] = hmm->p1; in Plan7LSConfig()
679 hmm->xt[XTN][MOVE] = 1-hmm->p1; /* allow N-terminal tail */ in Plan7SWConfig()
680 hmm->xt[XTN][LOOP] = hmm->p1; in Plan7SWConfig()
739 hmm->xt[XTN][LOOP] = hmm->p1; in Plan7FSConfig()
796 hmm->xt[XTN][MOVE] = 1./351.; in Plan7ESTConfig()
[all …]
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| H A D | core_algorithms.c | 247 xmx[i][XMN] = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]; in P7Forward()
256 xmx[i][XMB] = ILogsum(xmx[i][XMN] + hmm->xsc[XTN][MOVE], in P7Forward()
355 if ((sc = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]) > -INFTY) in P7Viterbi()
372 if ((sc = xmx[i][XMN] + hmm->xsc[XTN][MOVE]) > -INFTY) in P7Viterbi()
547 if (xmx[i][XMB] == xmx[i][XMN] + hmm->xsc[XTN][MOVE]) in P7ViterbiTrace()
931 if ((sc = xmx[prv][XMN] + hmm->xsc[XTN][LOOP]) > -INFTY) in P7ParsingViterbi()
1280 xmx[1][XMN] = xmx[0][XMN] + hmm->xsc[XTN][LOOP]; in Plan7ESTViterbi()
1281 xmx[1][XMB] = xmx[1][XMN] + hmm->xsc[XTN][MOVE]; in Plan7ESTViterbi()
1366 xmx[i][XMN] = xmx[i-1][XMN] + hmm->xsc[XTN][LOOP]; in Plan7ESTViterbi()
1377 xmx[i][XMB] = xmx[i][XMN] + hmm->xsc[XTN][MOVE]; in Plan7ESTViterbi()
[all …]
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| /dports/finance/py-pycoin/pycoin-0.91.20210515/tests/ |
| H A D | key_validate_test.py | 7 from pycoin.symbols.xtn import network as XTN unknown
106 key = XTN.keys.private(secret_exponent=273)
109 pub_k = XTN.parse(address)
113 priv_k = XTN.parse.wif(wif)
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| H A D | msg_signing_test.py | 5 from pycoin.symbols.xtn import network as XTN unknown
135 m, a, s = XTN.msg.parse_signed(bearbin)
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| H A D | keyparser_test.py | 4 from pycoin.symbols.xtn import network as XTN unknown
20 key = XTN.parse("tprv8ZgxMBicQKsPdpQD2swL99YVLB6W2GDqNVcCSfAZ9zMXvh6DYj5iJMZmUVrF66"
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| /dports/finance/py-pycoin/pycoin-0.91.20210515/tests/btc/ |
| H A D | bip32_test.py | 5 from pycoin.symbols.xtn import network as XTN unknown
186 master = XTN.keys.bip32_seed(h2b("000102030405060708090a0b0c0d0e0f"))
243 key = XTN.keys.private(secret_exponent=273)
244 wallet = XTN.keys.bip32_seed(bytes(key.wif().encode('utf8')))
247 pub_k = XTN.parse.address(address)
251 priv_k = XTN.parse.secret(wif)
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| /dports/cad/magic/magic-8.3.245/scmos/cif_template/ |
| H A D | cifout-cmosn.gen | 50 templayer XTN
85 and-not XTN
|
| H A D | cifout.scgpw | 61 templayer XTN
68 and-not XTN
|
| H A D | cifout-cmos26g.soi | 76 templayer XTN
113 and-not XTN
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| H A D | cifout.pw | 92 templayer XTN
108 and-not XTN
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| H A D | cifout.scgnw | 79 templayer XTN clc
107 and-not XTN
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| H A D | cifout-cmos34.pw | 80 templayer XTN
96 and-not XTN
|
| H A D | cifout-cmosn.nw | 77 templayer XTN clc
110 and-not XTN
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| H A D | cifout-orbit.pw | 80 templayer XTN
96 and-not XTN
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| H A D | cifout.test | 77 templayer XTN clc
110 and-not XTN
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| H A D | cifout-cmos14b-sub.gen | 79 templayer XTN
116 and-not XTN
|
| H A D | cifout-cmosx.gen | 78 templayer XTN
115 and-not XTN
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| H A D | cifout-cmos14b.gen | 79 templayer XTN
116 and-not XTN
|
| H A D | cifout-cmos34.nw | 88 templayer XTN clc
124 and-not XTN
|
| H A D | cifout-ibm.gen | 78 templayer XTN
115 and-not XTN
|
| H A D | cifout-cmos26g.gen | 80 templayer XTN
117 and-not XTN
|
| /dports/biology/molden/molden5.8/plush/ |
| H A D | XTN | 1 mol="XTN" Charge="0"
|