/dports/biology/py-pysam/pysam-0.18.0/pysam/ |
H A D | libcfaidx.c | 2566 __Pyx_TraceDeclarations in __pyx_f_5pysam_9libcfaidx_makeFastqProxy() 2661 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libcfaidx_9FastaFile___cinit__() 2797 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libcfaidx_9FastaFile_2is_open() 2863 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libcfaidx_9FastaFile_4__len__() 3035 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libcfaidx_9FastaFile_6_open() 3821 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libcfaidx_9FastaFile_8close() 3908 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libcfaidx_9FastaFile_10__dealloc__() 3995 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libcfaidx_9FastaFile_12__enter__() 4120 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libcfaidx_9FastaFile_14__exit__() 4214 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libcfaidx_9FastaFile_6closed___get__() [all …]
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H A D | libcalignedsegment.c | 4822 __Pyx_TraceDeclarations in __pyx_gb_5pysam_18libcalignedsegment_2generator() 4979 __Pyx_TraceDeclarations in __pyx_gb_5pysam_18libcalignedsegment_5generator1() 5106 __Pyx_TraceDeclarations in __pyx_f_5pysam_18libcalignedsegment_c_mul() 5164 __Pyx_TraceDeclarations in __pyx_f_5pysam_18libcalignedsegment_tolower() 5251 __Pyx_TraceDeclarations in __pyx_f_5pysam_18libcalignedsegment_toupper() 5338 __Pyx_TraceDeclarations in __pyx_f_5pysam_18libcalignedsegment_strand_mark_char() 5479 __Pyx_TraceDeclarations in __pyx_f_5pysam_18libcalignedsegment_pileup_base_qual_skip() 5597 __Pyx_TraceDeclarations in __pyx_f_5pysam_18libcalignedsegment_map_typecode_htslib_to_python() 5683 __Pyx_TraceDeclarations in __pyx_f_5pysam_18libcalignedsegment_map_typecode_python_to_htslib() 5767 __Pyx_TraceDeclarations in __pyx_f_5pysam_18libcalignedsegment_update_bin() [all …]
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H A D | libcbcf.c | 4800 __Pyx_TraceDeclarations in __pyx_f_5pysam_7libcbcf_bcf_str_cache_get_charptr() 4989 __Pyx_TraceDeclarations in __pyx_f_5pysam_7libcbcf_comb() 5257 __Pyx_TraceDeclarations in __pyx_f_5pysam_7libcbcf_bcf_geno_combinations() 5305 __Pyx_TraceDeclarations in __pyx_f_5pysam_7libcbcf_check_header_id() 5368 __Pyx_TraceDeclarations in __pyx_f_5pysam_7libcbcf_is_gt_fmt() 5419 __Pyx_TraceDeclarations in __pyx_f_5pysam_7libcbcf_bcf_genotype_count() 5704 __Pyx_TraceDeclarations in __pyx_gb_5pysam_7libcbcf_19char_array_to_tuple_2generator28() 5782 __Pyx_TraceDeclarations in __pyx_f_5pysam_7libcbcf_char_array_to_tuple() 6053 __Pyx_TraceDeclarations in __pyx_gb_5pysam_7libcbcf_19bcf_array_to_object_2generator29() 6216 __Pyx_TraceDeclarations in __pyx_f_5pysam_7libcbcf_bcf_array_to_object() [all …]
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H A D | libchtslib.c | 2712 __Pyx_TraceDeclarations in __pyx_f_5pysam_10libchtslib_set_verbosity() 2784 __Pyx_TraceDeclarations in __pyx_pf_5pysam_10libchtslib_set_verbosity() 2822 __Pyx_TraceDeclarations in __pyx_f_5pysam_10libchtslib_get_verbosity() 2881 __Pyx_TraceDeclarations in __pyx_pf_5pysam_10libchtslib_2get_verbosity() 2999 __Pyx_TraceDeclarations in __pyx_pf_5pysam_10libchtslib_5HFile___init__() 3063 __Pyx_TraceDeclarations in __pyx_pf_5pysam_10libchtslib_5HFile_2__dealloc__() 3143 __Pyx_TraceDeclarations in __pyx_pf_5pysam_10libchtslib_5HFile_6closed___get__() 3196 __Pyx_TraceDeclarations in __pyx_f_5pysam_10libchtslib_5HFile__open() 3440 __Pyx_TraceDeclarations in __pyx_pf_5pysam_10libchtslib_5HFile_4close() 3594 __Pyx_TraceDeclarations in __pyx_pf_5pysam_10libchtslib_5HFile_6fileno() [all …]
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H A D | libctabix.c | 3491 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libctabix_6Parser___init__() 3556 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libctabix_6Parser_2set_encoding() 3622 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libctabix_6Parser_4get_encoding() 3671 __Pyx_TraceDeclarations in __pyx_f_5pysam_9libctabix_6Parser_parse() 3802 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libctabix_6Parser_6__call__() 3870 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libctabix_6Parser_8__reduce_cython__() 4106 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libctabix_6Parser_10__setstate_cython__() 4157 __Pyx_TraceDeclarations in __pyx_f_5pysam_9libctabix_7asTuple_parse() 4247 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libctabix_7asTuple___reduce_cython__() 4483 __Pyx_TraceDeclarations in __pyx_pf_5pysam_9libctabix_7asTuple_2__setstate_cython__() [all …]
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H A D | libcalignmentfile.c | 4061 __Pyx_TraceDeclarations in __pyx_pf_5pysam_17libcalignmentfile_build_header_line() 4515 __Pyx_TraceDeclarations in __pyx_f_5pysam_17libcalignmentfile_makeAlignmentHeader() 4636 __Pyx_TraceDeclarations in __pyx_pf_5pysam_17libcalignmentfile_2read_failure_reason() 4746 __Pyx_TraceDeclarations in __pyx_f_5pysam_17libcalignmentfile_fill_AlignmentHeader_from_list() 4794 __Pyx_TraceDeclarations in __pyx_pf_5pysam_17libcalignmentfile_15AlignmentHeader___cinit__() 4857 __Pyx_TraceDeclarations in __pyx_pf_5pysam_17libcalignmentfile_15AlignmentHeader_2__init__() 5023 __Pyx_TraceDeclarations in __pyx_pf_5pysam_17libcalignmentfile_15AlignmentHeader_4_from_text_and_lengths() 5738 __Pyx_TraceDeclarations in __pyx_pf_5pysam_17libcalignmentfile_15AlignmentHeader_6from_text() 6249 __Pyx_TraceDeclarations in __pyx_pf_5pysam_17libcalignmentfile_15AlignmentHeader_8from_dict() 7461 __Pyx_TraceDeclarations in __pyx_pf_5pysam_17libcalignmentfile_15AlignmentHeader_10from_references() [all …]
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H A D | libcsamfile.c | 2576 __Pyx_TraceDeclarations in __pyx_pf_5pysam_11libcsamfile_7Samfile___reduce_cython__() 2637 __Pyx_TraceDeclarations in __pyx_pf_5pysam_11libcsamfile_7Samfile_2__setstate_cython__() 2697 __Pyx_TraceDeclarations in __pyx_pf_5pysam_11libcsamfile_11AlignedRead___reduce_cython__() 2758 __Pyx_TraceDeclarations in __pyx_pf_5pysam_11libcsamfile_11AlignedRead_2__setstate_cython__() 2820 __Pyx_TraceDeclarations in __pyx_pf_7cpython_5array_5array___getbuffer__() 3066 __Pyx_TraceDeclarations in __pyx_pf_7cpython_5array_5array_2__releasebuffer__() 3111 __Pyx_TraceDeclarations in __pyx_f_7cpython_5array_clone() 3216 __Pyx_TraceDeclarations in __pyx_f_7cpython_5array_copy() 3291 __Pyx_TraceDeclarations in __pyx_f_7cpython_5array_extend_buffer() 3375 __Pyx_TraceDeclarations in __pyx_f_7cpython_5array_extend() [all …]
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/dports/science/py-pymatgen/pymatgen-2022.0.15/pymatgen/optimization/ |
H A D | neighbors.c | 2931 __Pyx_TraceDeclarations in __pyx_f_12optimization_9neighbors_safe_malloc() 3059 __Pyx_TraceDeclarations in __pyx_f_12optimization_9neighbors_safe_realloc() 3365 __Pyx_TraceDeclarations in __pyx_pf_12optimization_9neighbors_find_points_in_spheres() 6117 __Pyx_TraceDeclarations in __pyx_f_12optimization_9neighbors_distance2() 6223 __Pyx_TraceDeclarations in __pyx_f_12optimization_9neighbors_get_cube_neighbors() 6815 __Pyx_TraceDeclarations in __pyx_f_12optimization_9neighbors_get_bounds() 6987 __Pyx_TraceDeclarations in __pyx_f_12optimization_9neighbors_get_frac_coords() 7087 __Pyx_TraceDeclarations in __pyx_f_12optimization_9neighbors_matmul() 7215 __Pyx_TraceDeclarations in __pyx_f_12optimization_9neighbors_matrix_inv() 7348 __Pyx_TraceDeclarations in __pyx_f_12optimization_9neighbors_matrix_det() [all …]
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/dports/math/py-CyLP/CyLP-0.91.4/cylp/cy/ |
H A D | CyClpSimplex.cpp | 4080 __Pyx_TraceDeclarations 4303 __Pyx_TraceDeclarations 4347 __Pyx_TraceDeclarations 4420 __Pyx_TraceDeclarations 4564 __Pyx_TraceDeclarations 4704 __Pyx_TraceDeclarations 5034 __Pyx_TraceDeclarations 5373 __Pyx_TraceDeclarations 5596 __Pyx_TraceDeclarations 5660 __Pyx_TraceDeclarations [all …]
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H A D | CyClpPrimalColumnPivotBase.cpp | 2651 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_26CyClpPrimalColumnPivotBase_RunPivotColumn() 2701 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_26CyClpPrimalColumnPivotBase_RunClone() 2743 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_26CyClpPrimalColumnPivotBase_RunSaveWeights() 2800 __Pyx_TraceDeclarations in __pyx_pf_4cylp_2cy_26CyClpPrimalColumnPivotBase_26CyClpPrimalColumnPivotBase___init__() 2863 __Pyx_TraceDeclarations in __pyx_pf_4cylp_2cy_26CyClpPrimalColumnPivotBase_26CyClpPrimalColumnPivotBase_2__dealloc__() 2913 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_26CyClpPrimalColumnPivotBase_26CyClpPrimalColumnPivotBase_pivotColumn() 2962 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_26CyClpPrimalColumnPivotBase_26CyClpPrimalColumnPivotBase_clone() 3013 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_26CyClpPrimalColumnPivotBase_26CyClpPrimalColumnPivotBase_saveWeights() 3058 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_26CyClpPrimalColumnPivotBase_26CyClpPrimalColumnPivotBase_model() 3100 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_26CyClpPrimalColumnPivotBase_26CyClpPrimalColumnPivotBase_setModel() [all …]
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H A D | CyClpDualRowPivotBase.cpp | 2737 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_21CyClpDualRowPivotBase_RunPivotRow() 2787 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_21CyClpDualRowPivotBase_RunDualPivotClone() 2830 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_21CyClpDualRowPivotBase_RunUpdateWeights() 2874 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_21CyClpDualRowPivotBase_RunUpdatePrimalSolution() 2956 __Pyx_TraceDeclarations in __pyx_pf_4cylp_2cy_21CyClpDualRowPivotBase_21CyClpDualRowPivotBase___init__() 3000 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_21CyClpDualRowPivotBase_21CyClpDualRowPivotBase_pivotRow() 3049 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_21CyClpDualRowPivotBase_21CyClpDualRowPivotBase_clone() 3101 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_21CyClpDualRowPivotBase_21CyClpDualRowPivotBase_updateWeights() 3149 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_21CyClpDualRowPivotBase_21CyClpDualRowPivotBase_updatePrimalSolution() 3203 __Pyx_TraceDeclarations in __pyx_f_4cylp_2cy_21CyClpDualRowPivotBase_21CyClpDualRowPivotBase_model() [all …]
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/dports/biology/py-macs2/MACS-2.2.7.1/MACS2/IO/ |
H A D | PairedEndTrack.c | 2806 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_14PairedEndTrack_8PETrackI___init__() 3005 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_14PairedEndTrack_8PETrackI_add_loc() 3438 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_14PairedEndTrack_8PETrackI_2add_loc() 3474 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_14PairedEndTrack_8PETrackI_destroy() 3851 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_14PairedEndTrack_8PETrackI_4destroy() 3885 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_14PairedEndTrack_8PETrackI___expand__() 4013 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_14PairedEndTrack_8PETrackI_6__expand__() 4051 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_14PairedEndTrack_8PETrackI_set_rlengths() 4338 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_14PairedEndTrack_8PETrackI_8set_rlengths() 4374 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_14PairedEndTrack_8PETrackI_get_rlengths() [all …]
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H A D | Parser.c | 3116 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_6Parser_guess_parser() 3602 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6Parser_guess_parser() 3650 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_6Parser___fw_binary_parse_le() 3997 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_6Parser___fw_binary_parse_be() 4355 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_6Parser___pe_binary_parse_le() 4641 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_6Parser___pe_binary_parse_be() 4977 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6Parser_17StrandFormatError___init__() 5048 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6Parser_17StrandFormatError_2__str__() 5224 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6Parser_13GenericParser___init__() 5614 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_6Parser_13GenericParser___skip_first_commentlines() [all …]
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H A D | FixWidthTrack.c | 2890 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_13FixWidthTrack_7FWTrack___init__() 3116 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_13FixWidthTrack_7FWTrack_destroy() 3651 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_13FixWidthTrack_7FWTrack_2destroy() 3686 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_13FixWidthTrack_7FWTrack_add_loc() 4158 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_13FixWidthTrack_7FWTrack_4add_loc() 4193 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_13FixWidthTrack_7FWTrack___expand__() 4287 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_13FixWidthTrack_7FWTrack_finalize() 4664 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_13FixWidthTrack_7FWTrack_6finalize() 4702 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_13FixWidthTrack_7FWTrack_set_rlengths() 4989 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_13FixWidthTrack_7FWTrack_8set_rlengths() [all …]
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H A D | ScoreTrack.c | 3298 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_10ScoreTrack_int_max() 3331 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_10ScoreTrack_int_min() 3365 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_10ScoreTrack_get_pscore() 3642 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_10ScoreTrack_logLR_asym() 3885 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_10ScoreTrack_logLR_sym() 4127 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_10ScoreTrack_get_logFE() 4174 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_10ScoreTrack_get_subtraction() 4232 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack___init__() 4373 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_2add_chromosome() 4619 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_4add() [all …]
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H A D | PeakIO.c | 2452 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_6PeakIO_subpeak_letters() 2703 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6PeakIO_11PeakContent___init__() 2845 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6PeakIO_11PeakContent_2__getitem__() 3225 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6PeakIO_11PeakContent_4__setitem__() 3584 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6PeakIO_11PeakContent_6__str__() 3693 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6PeakIO_11PeakContent_8__reduce_cython__() 3984 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6PeakIO_11PeakContent_10__setstate_cython__() 4047 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6PeakIO_6PeakIO___init__() 4107 __Pyx_TraceDeclarations in __pyx_f_5MACS2_2IO_6PeakIO_6PeakIO_add() 4615 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_2IO_6PeakIO_6PeakIO_2add() [all …]
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/dports/biology/py-macs2/MACS-2.2.7.1/MACS2/ |
H A D | Prob.c | 2225 __Pyx_TraceDeclarations in __pyx_f_5MACS2_4Prob_pnorm() 2381 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_4Prob_pnorm() 2418 __Pyx_TraceDeclarations in __pyx_f_5MACS2_4Prob_factorial() 2550 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_4Prob_2factorial() 2588 __Pyx_TraceDeclarations in __pyx_f_5MACS2_4Prob_poz() 2835 __Pyx_TraceDeclarations in __pyx_f_5MACS2_4Prob_ex20() 2918 __Pyx_TraceDeclarations in __pyx_f_5MACS2_4Prob_chisq_pvalue_e() 3285 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_4Prob_4chisq_pvalue_e() 3327 __Pyx_TraceDeclarations in __pyx_f_5MACS2_4Prob_chisq_logp_e() 3732 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_4Prob_6chisq_logp_e() [all …]
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H A D | PeakModel.c | 2866 __Pyx_TraceDeclarations in __pyx_f_5MACS2_9PeakModel_median() 3037 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_9PeakModel_median() 3133 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_9PeakModel_23NotEnoughPairsException___init__() 3193 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_9PeakModel_23NotEnoughPairsException_2__str__() 3328 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_9PeakModel_9PeakModel___init__() 3540 __Pyx_TraceDeclarations in __pyx_f_5MACS2_9PeakModel_9PeakModel_build() 4110 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_9PeakModel_9PeakModel_2build() 4161 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_9PeakModel_9PeakModel_4__str__() 4314 __Pyx_TraceDeclarations in __pyx_f_5MACS2_9PeakModel_9PeakModel___paired_peak_model() 5645 __Pyx_TraceDeclarations in __pyx_f_5MACS2_9PeakModel_9PeakModel___model_add_line() [all …]
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H A D | Statistics.c | 1667 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_10Statistics_18P_Score_Upper_Tail___init__() 1721 __Pyx_TraceDeclarations in __pyx_f_5MACS2_10Statistics_18P_Score_Upper_Tail_get_pscore() 2093 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_10Statistics_18P_Score_Upper_Tail_2get_pscore() 2141 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_10Statistics_18P_Score_Upper_Tail_4__reduce_cython__() 2373 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_10Statistics_18P_Score_Upper_Tail_6__setstate_cython__() 2436 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_10Statistics_10LogLR_Asym___init__() 2490 __Pyx_TraceDeclarations in __pyx_f_5MACS2_10Statistics_10LogLR_Asym_get_logLR_asym() 2857 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_10Statistics_10LogLR_Asym_2get_logLR_asym() 2905 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_10Statistics_10LogLR_Asym_4__reduce_cython__() 3137 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_10Statistics_10LogLR_Asym_6__setstate_cython__() [all …]
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H A D | Pileup.c | 2486 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Pileup_clean_up_ndarray() 2635 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Pileup_pileup_and_write() 3386 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_6Pileup_pileup_and_write() 3447 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Pileup_pileup_and_write_pe() 3984 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_6Pileup_2pileup_and_write_pe() 4043 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Pileup_unified_pileup_bdg() 4595 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_6Pileup_4unified_pileup_bdg() 4667 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Pileup_pileup_bdg_se() 5286 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Pileup_pileup_w_multiple_d_bdg() 6079 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Pileup_pileup_bdg_pe() [all …]
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H A D | Signal.c | 2258 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Signal_maxima() 2690 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_6Signal_maxima() 2756 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Signal_internal_minima() 3170 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Signal_sqrt() 3263 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Signal_enforce_peakyness() 4169 __Pyx_TraceDeclarations in __pyx_pf_5MACS2_6Signal_2enforce_peakyness() 4236 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Signal_is_valid_peak() 4371 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Signal_too_flat() 4475 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Signal_hard_clip() 4719 __Pyx_TraceDeclarations in __pyx_f_5MACS2_6Signal_enforce_valleys() [all …]
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/dports/lang/cython/Cython-0.29.24/Cython/Utility/ |
H A D | Profile.c | 50 #define __Pyx_TraceDeclarations \ macro 177 #define __Pyx_TraceDeclarations macro
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/dports/lang/cython/Cython-0.29.24/build/lib.dragonfly-6.3-DEVELOPMENT-x86_64-3.8/Cython/Utility/ |
H A D | Profile.c | 50 #define __Pyx_TraceDeclarations \ macro 177 #define __Pyx_TraceDeclarations macro
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/dports/lang/cython/stage/usr/local/lib/python3.8/site-packages/Cython/Utility/ |
H A D | Profile.c | 50 #define __Pyx_TraceDeclarations \ macro 177 #define __Pyx_TraceDeclarations macro
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/dports/lang/cython-devel/cython-2b1e743/Cython/Utility/ |
H A D | Profile.c | 50 #define __Pyx_TraceDeclarations \ macro 198 #define __Pyx_TraceDeclarations macro
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