1 /* Generated by Cython 0.29.14 */
2
3 #define PY_SSIZE_T_CLEAN
4 #include "Python.h"
5 #ifndef Py_PYTHON_H
6 #error Python headers needed to compile C extensions, please install development version of Python.
7 #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
8 #error Cython requires Python 2.6+ or Python 3.3+.
9 #else
10 #define CYTHON_ABI "0_29_14"
11 #define CYTHON_HEX_VERSION 0x001D0EF0
12 #define CYTHON_FUTURE_DIVISION 1
13 #include <stddef.h>
14 #ifndef offsetof
15 #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
16 #endif
17 #if !defined(WIN32) && !defined(MS_WINDOWS)
18 #ifndef __stdcall
19 #define __stdcall
20 #endif
21 #ifndef __cdecl
22 #define __cdecl
23 #endif
24 #ifndef __fastcall
25 #define __fastcall
26 #endif
27 #endif
28 #ifndef DL_IMPORT
29 #define DL_IMPORT(t) t
30 #endif
31 #ifndef DL_EXPORT
32 #define DL_EXPORT(t) t
33 #endif
34 #define __PYX_COMMA ,
35 #ifndef HAVE_LONG_LONG
36 #if PY_VERSION_HEX >= 0x02070000
37 #define HAVE_LONG_LONG
38 #endif
39 #endif
40 #ifndef PY_LONG_LONG
41 #define PY_LONG_LONG LONG_LONG
42 #endif
43 #ifndef Py_HUGE_VAL
44 #define Py_HUGE_VAL HUGE_VAL
45 #endif
46 #ifdef PYPY_VERSION
47 #define CYTHON_COMPILING_IN_PYPY 1
48 #define CYTHON_COMPILING_IN_PYSTON 0
49 #define CYTHON_COMPILING_IN_CPYTHON 0
50 #undef CYTHON_USE_TYPE_SLOTS
51 #define CYTHON_USE_TYPE_SLOTS 0
52 #undef CYTHON_USE_PYTYPE_LOOKUP
53 #define CYTHON_USE_PYTYPE_LOOKUP 0
54 #if PY_VERSION_HEX < 0x03050000
55 #undef CYTHON_USE_ASYNC_SLOTS
56 #define CYTHON_USE_ASYNC_SLOTS 0
57 #elif !defined(CYTHON_USE_ASYNC_SLOTS)
58 #define CYTHON_USE_ASYNC_SLOTS 1
59 #endif
60 #undef CYTHON_USE_PYLIST_INTERNALS
61 #define CYTHON_USE_PYLIST_INTERNALS 0
62 #undef CYTHON_USE_UNICODE_INTERNALS
63 #define CYTHON_USE_UNICODE_INTERNALS 0
64 #undef CYTHON_USE_UNICODE_WRITER
65 #define CYTHON_USE_UNICODE_WRITER 0
66 #undef CYTHON_USE_PYLONG_INTERNALS
67 #define CYTHON_USE_PYLONG_INTERNALS 0
68 #undef CYTHON_AVOID_BORROWED_REFS
69 #define CYTHON_AVOID_BORROWED_REFS 1
70 #undef CYTHON_ASSUME_SAFE_MACROS
71 #define CYTHON_ASSUME_SAFE_MACROS 0
72 #undef CYTHON_UNPACK_METHODS
73 #define CYTHON_UNPACK_METHODS 0
74 #undef CYTHON_FAST_THREAD_STATE
75 #define CYTHON_FAST_THREAD_STATE 0
76 #undef CYTHON_FAST_PYCALL
77 #define CYTHON_FAST_PYCALL 0
78 #undef CYTHON_PEP489_MULTI_PHASE_INIT
79 #define CYTHON_PEP489_MULTI_PHASE_INIT 0
80 #undef CYTHON_USE_TP_FINALIZE
81 #define CYTHON_USE_TP_FINALIZE 0
82 #undef CYTHON_USE_DICT_VERSIONS
83 #define CYTHON_USE_DICT_VERSIONS 0
84 #undef CYTHON_USE_EXC_INFO_STACK
85 #define CYTHON_USE_EXC_INFO_STACK 0
86 #elif defined(PYSTON_VERSION)
87 #define CYTHON_COMPILING_IN_PYPY 0
88 #define CYTHON_COMPILING_IN_PYSTON 1
89 #define CYTHON_COMPILING_IN_CPYTHON 0
90 #ifndef CYTHON_USE_TYPE_SLOTS
91 #define CYTHON_USE_TYPE_SLOTS 1
92 #endif
93 #undef CYTHON_USE_PYTYPE_LOOKUP
94 #define CYTHON_USE_PYTYPE_LOOKUP 0
95 #undef CYTHON_USE_ASYNC_SLOTS
96 #define CYTHON_USE_ASYNC_SLOTS 0
97 #undef CYTHON_USE_PYLIST_INTERNALS
98 #define CYTHON_USE_PYLIST_INTERNALS 0
99 #ifndef CYTHON_USE_UNICODE_INTERNALS
100 #define CYTHON_USE_UNICODE_INTERNALS 1
101 #endif
102 #undef CYTHON_USE_UNICODE_WRITER
103 #define CYTHON_USE_UNICODE_WRITER 0
104 #undef CYTHON_USE_PYLONG_INTERNALS
105 #define CYTHON_USE_PYLONG_INTERNALS 0
106 #ifndef CYTHON_AVOID_BORROWED_REFS
107 #define CYTHON_AVOID_BORROWED_REFS 0
108 #endif
109 #ifndef CYTHON_ASSUME_SAFE_MACROS
110 #define CYTHON_ASSUME_SAFE_MACROS 1
111 #endif
112 #ifndef CYTHON_UNPACK_METHODS
113 #define CYTHON_UNPACK_METHODS 1
114 #endif
115 #undef CYTHON_FAST_THREAD_STATE
116 #define CYTHON_FAST_THREAD_STATE 0
117 #undef CYTHON_FAST_PYCALL
118 #define CYTHON_FAST_PYCALL 0
119 #undef CYTHON_PEP489_MULTI_PHASE_INIT
120 #define CYTHON_PEP489_MULTI_PHASE_INIT 0
121 #undef CYTHON_USE_TP_FINALIZE
122 #define CYTHON_USE_TP_FINALIZE 0
123 #undef CYTHON_USE_DICT_VERSIONS
124 #define CYTHON_USE_DICT_VERSIONS 0
125 #undef CYTHON_USE_EXC_INFO_STACK
126 #define CYTHON_USE_EXC_INFO_STACK 0
127 #else
128 #define CYTHON_COMPILING_IN_PYPY 0
129 #define CYTHON_COMPILING_IN_PYSTON 0
130 #define CYTHON_COMPILING_IN_CPYTHON 1
131 #ifndef CYTHON_USE_TYPE_SLOTS
132 #define CYTHON_USE_TYPE_SLOTS 1
133 #endif
134 #if PY_VERSION_HEX < 0x02070000
135 #undef CYTHON_USE_PYTYPE_LOOKUP
136 #define CYTHON_USE_PYTYPE_LOOKUP 0
137 #elif !defined(CYTHON_USE_PYTYPE_LOOKUP)
138 #define CYTHON_USE_PYTYPE_LOOKUP 1
139 #endif
140 #if PY_MAJOR_VERSION < 3
141 #undef CYTHON_USE_ASYNC_SLOTS
142 #define CYTHON_USE_ASYNC_SLOTS 0
143 #elif !defined(CYTHON_USE_ASYNC_SLOTS)
144 #define CYTHON_USE_ASYNC_SLOTS 1
145 #endif
146 #if PY_VERSION_HEX < 0x02070000
147 #undef CYTHON_USE_PYLONG_INTERNALS
148 #define CYTHON_USE_PYLONG_INTERNALS 0
149 #elif !defined(CYTHON_USE_PYLONG_INTERNALS)
150 #define CYTHON_USE_PYLONG_INTERNALS 1
151 #endif
152 #ifndef CYTHON_USE_PYLIST_INTERNALS
153 #define CYTHON_USE_PYLIST_INTERNALS 1
154 #endif
155 #ifndef CYTHON_USE_UNICODE_INTERNALS
156 #define CYTHON_USE_UNICODE_INTERNALS 1
157 #endif
158 #if PY_VERSION_HEX < 0x030300F0
159 #undef CYTHON_USE_UNICODE_WRITER
160 #define CYTHON_USE_UNICODE_WRITER 0
161 #elif !defined(CYTHON_USE_UNICODE_WRITER)
162 #define CYTHON_USE_UNICODE_WRITER 1
163 #endif
164 #ifndef CYTHON_AVOID_BORROWED_REFS
165 #define CYTHON_AVOID_BORROWED_REFS 0
166 #endif
167 #ifndef CYTHON_ASSUME_SAFE_MACROS
168 #define CYTHON_ASSUME_SAFE_MACROS 1
169 #endif
170 #ifndef CYTHON_UNPACK_METHODS
171 #define CYTHON_UNPACK_METHODS 1
172 #endif
173 #ifndef CYTHON_FAST_THREAD_STATE
174 #define CYTHON_FAST_THREAD_STATE 1
175 #endif
176 #ifndef CYTHON_FAST_PYCALL
177 #define CYTHON_FAST_PYCALL 1
178 #endif
179 #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
180 #define CYTHON_PEP489_MULTI_PHASE_INIT (PY_VERSION_HEX >= 0x03050000)
181 #endif
182 #ifndef CYTHON_USE_TP_FINALIZE
183 #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1)
184 #endif
185 #ifndef CYTHON_USE_DICT_VERSIONS
186 #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX >= 0x030600B1)
187 #endif
188 #ifndef CYTHON_USE_EXC_INFO_STACK
189 #define CYTHON_USE_EXC_INFO_STACK (PY_VERSION_HEX >= 0x030700A3)
190 #endif
191 #endif
192 #if !defined(CYTHON_FAST_PYCCALL)
193 #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
194 #endif
195 #if CYTHON_USE_PYLONG_INTERNALS
196 #include "longintrepr.h"
197 #undef SHIFT
198 #undef BASE
199 #undef MASK
200 #ifdef SIZEOF_VOID_P
201 enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) };
202 #endif
203 #endif
204 #ifndef __has_attribute
205 #define __has_attribute(x) 0
206 #endif
207 #ifndef __has_cpp_attribute
208 #define __has_cpp_attribute(x) 0
209 #endif
210 #ifndef CYTHON_RESTRICT
211 #if defined(__GNUC__)
212 #define CYTHON_RESTRICT __restrict__
213 #elif defined(_MSC_VER) && _MSC_VER >= 1400
214 #define CYTHON_RESTRICT __restrict
215 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
216 #define CYTHON_RESTRICT restrict
217 #else
218 #define CYTHON_RESTRICT
219 #endif
220 #endif
221 #ifndef CYTHON_UNUSED
222 # if defined(__GNUC__)
223 # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
224 # define CYTHON_UNUSED __attribute__ ((__unused__))
225 # else
226 # define CYTHON_UNUSED
227 # endif
228 # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
229 # define CYTHON_UNUSED __attribute__ ((__unused__))
230 # else
231 # define CYTHON_UNUSED
232 # endif
233 #endif
234 #ifndef CYTHON_MAYBE_UNUSED_VAR
235 # if defined(__cplusplus)
CYTHON_MAYBE_UNUSED_VAR(const T &)236 template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { }
237 # else
238 # define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x)
239 # endif
240 #endif
241 #ifndef CYTHON_NCP_UNUSED
242 # if CYTHON_COMPILING_IN_CPYTHON
243 # define CYTHON_NCP_UNUSED
244 # else
245 # define CYTHON_NCP_UNUSED CYTHON_UNUSED
246 # endif
247 #endif
248 #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
249 #ifdef _MSC_VER
250 #ifndef _MSC_STDINT_H_
251 #if _MSC_VER < 1300
252 typedef unsigned char uint8_t;
253 typedef unsigned int uint32_t;
254 #else
255 typedef unsigned __int8 uint8_t;
256 typedef unsigned __int32 uint32_t;
257 #endif
258 #endif
259 #else
260 #include <stdint.h>
261 #endif
262 #ifndef CYTHON_FALLTHROUGH
263 #if defined(__cplusplus) && __cplusplus >= 201103L
264 #if __has_cpp_attribute(fallthrough)
265 #define CYTHON_FALLTHROUGH [[fallthrough]]
266 #elif __has_cpp_attribute(clang::fallthrough)
267 #define CYTHON_FALLTHROUGH [[clang::fallthrough]]
268 #elif __has_cpp_attribute(gnu::fallthrough)
269 #define CYTHON_FALLTHROUGH [[gnu::fallthrough]]
270 #endif
271 #endif
272 #ifndef CYTHON_FALLTHROUGH
273 #if __has_attribute(fallthrough)
274 #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
275 #else
276 #define CYTHON_FALLTHROUGH
277 #endif
278 #endif
279 #if defined(__clang__ ) && defined(__apple_build_version__)
280 #if __apple_build_version__ < 7000000
281 #undef CYTHON_FALLTHROUGH
282 #define CYTHON_FALLTHROUGH
283 #endif
284 #endif
285 #endif
286
287 #ifndef CYTHON_INLINE
288 #if defined(__clang__)
289 #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
290 #elif defined(__GNUC__)
291 #define CYTHON_INLINE __inline__
292 #elif defined(_MSC_VER)
293 #define CYTHON_INLINE __inline
294 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
295 #define CYTHON_INLINE inline
296 #else
297 #define CYTHON_INLINE
298 #endif
299 #endif
300
301 #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
302 #define Py_OptimizeFlag 0
303 #endif
304 #define __PYX_BUILD_PY_SSIZE_T "n"
305 #define CYTHON_FORMAT_SSIZE_T "z"
306 #if PY_MAJOR_VERSION < 3
307 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
308 #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
309 PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
310 #define __Pyx_DefaultClassType PyClass_Type
311 #else
312 #define __Pyx_BUILTIN_MODULE_NAME "builtins"
313 #if PY_VERSION_HEX >= 0x030800A4 && PY_VERSION_HEX < 0x030800B2
314 #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
315 PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
316 #else
317 #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
318 PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
319 #endif
320 #define __Pyx_DefaultClassType PyType_Type
321 #endif
322 #ifndef Py_TPFLAGS_CHECKTYPES
323 #define Py_TPFLAGS_CHECKTYPES 0
324 #endif
325 #ifndef Py_TPFLAGS_HAVE_INDEX
326 #define Py_TPFLAGS_HAVE_INDEX 0
327 #endif
328 #ifndef Py_TPFLAGS_HAVE_NEWBUFFER
329 #define Py_TPFLAGS_HAVE_NEWBUFFER 0
330 #endif
331 #ifndef Py_TPFLAGS_HAVE_FINALIZE
332 #define Py_TPFLAGS_HAVE_FINALIZE 0
333 #endif
334 #ifndef METH_STACKLESS
335 #define METH_STACKLESS 0
336 #endif
337 #if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL)
338 #ifndef METH_FASTCALL
339 #define METH_FASTCALL 0x80
340 #endif
341 typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs);
342 typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args,
343 Py_ssize_t nargs, PyObject *kwnames);
344 #else
345 #define __Pyx_PyCFunctionFast _PyCFunctionFast
346 #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
347 #endif
348 #if CYTHON_FAST_PYCCALL
349 #define __Pyx_PyFastCFunction_Check(func)\
350 ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)))))
351 #else
352 #define __Pyx_PyFastCFunction_Check(func) 0
353 #endif
354 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
355 #define PyObject_Malloc(s) PyMem_Malloc(s)
356 #define PyObject_Free(p) PyMem_Free(p)
357 #define PyObject_Realloc(p) PyMem_Realloc(p)
358 #endif
359 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030400A1
360 #define PyMem_RawMalloc(n) PyMem_Malloc(n)
361 #define PyMem_RawRealloc(p, n) PyMem_Realloc(p, n)
362 #define PyMem_RawFree(p) PyMem_Free(p)
363 #endif
364 #if CYTHON_COMPILING_IN_PYSTON
365 #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co)
366 #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
367 #else
368 #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0)
369 #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno)
370 #endif
371 #if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000
372 #define __Pyx_PyThreadState_Current PyThreadState_GET()
373 #elif PY_VERSION_HEX >= 0x03060000
374 #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
375 #elif PY_VERSION_HEX >= 0x03000000
376 #define __Pyx_PyThreadState_Current PyThreadState_GET()
377 #else
378 #define __Pyx_PyThreadState_Current _PyThreadState_Current
379 #endif
380 #if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT)
381 #include "pythread.h"
382 #define Py_tss_NEEDS_INIT 0
383 typedef int Py_tss_t;
PyThread_tss_create(Py_tss_t * key)384 static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) {
385 *key = PyThread_create_key();
386 return 0;
387 }
PyThread_tss_alloc(void)388 static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) {
389 Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t));
390 *key = Py_tss_NEEDS_INIT;
391 return key;
392 }
PyThread_tss_free(Py_tss_t * key)393 static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) {
394 PyObject_Free(key);
395 }
PyThread_tss_is_created(Py_tss_t * key)396 static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) {
397 return *key != Py_tss_NEEDS_INIT;
398 }
PyThread_tss_delete(Py_tss_t * key)399 static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) {
400 PyThread_delete_key(*key);
401 *key = Py_tss_NEEDS_INIT;
402 }
PyThread_tss_set(Py_tss_t * key,void * value)403 static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) {
404 return PyThread_set_key_value(*key, value);
405 }
PyThread_tss_get(Py_tss_t * key)406 static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
407 return PyThread_get_key_value(*key);
408 }
409 #endif
410 #if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized)
411 #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
412 #else
413 #define __Pyx_PyDict_NewPresized(n) PyDict_New()
414 #endif
415 #if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION
416 #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
417 #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
418 #else
419 #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
420 #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
421 #endif
422 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS
423 #define __Pyx_PyDict_GetItemStr(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
424 #else
425 #define __Pyx_PyDict_GetItemStr(dict, name) PyDict_GetItem(dict, name)
426 #endif
427 #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
428 #define CYTHON_PEP393_ENABLED 1
429 #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\
430 0 : _PyUnicode_Ready((PyObject *)(op)))
431 #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
432 #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
433 #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u)
434 #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u)
435 #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u)
436 #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i)
437 #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch)
438 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
439 #else
440 #define CYTHON_PEP393_ENABLED 0
441 #define PyUnicode_1BYTE_KIND 1
442 #define PyUnicode_2BYTE_KIND 2
443 #define PyUnicode_4BYTE_KIND 4
444 #define __Pyx_PyUnicode_READY(op) (0)
445 #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
446 #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
447 #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
448 #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE))
449 #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u))
450 #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
451 #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
452 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u))
453 #endif
454 #if CYTHON_COMPILING_IN_PYPY
455 #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b)
456 #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b)
457 #else
458 #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b)
459 #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
460 PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
461 #endif
462 #if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
463 #define PyUnicode_Contains(u, s) PySequence_Contains(u, s)
464 #endif
465 #if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
466 #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type)
467 #endif
468 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
469 #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt)
470 #endif
471 #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
472 #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
473 #if PY_MAJOR_VERSION >= 3
474 #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b)
475 #else
476 #define __Pyx_PyString_Format(a, b) PyString_Format(a, b)
477 #endif
478 #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
479 #define PyObject_ASCII(o) PyObject_Repr(o)
480 #endif
481 #if PY_MAJOR_VERSION >= 3
482 #define PyBaseString_Type PyUnicode_Type
483 #define PyStringObject PyUnicodeObject
484 #define PyString_Type PyUnicode_Type
485 #define PyString_Check PyUnicode_Check
486 #define PyString_CheckExact PyUnicode_CheckExact
487 #define PyObject_Unicode PyObject_Str
488 #endif
489 #if PY_MAJOR_VERSION >= 3
490 #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
491 #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
492 #else
493 #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
494 #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
495 #endif
496 #ifndef PySet_CheckExact
497 #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
498 #endif
499 #if CYTHON_ASSUME_SAFE_MACROS
500 #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq)
501 #else
502 #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq)
503 #endif
504 #if PY_MAJOR_VERSION >= 3
505 #define PyIntObject PyLongObject
506 #define PyInt_Type PyLong_Type
507 #define PyInt_Check(op) PyLong_Check(op)
508 #define PyInt_CheckExact(op) PyLong_CheckExact(op)
509 #define PyInt_FromString PyLong_FromString
510 #define PyInt_FromUnicode PyLong_FromUnicode
511 #define PyInt_FromLong PyLong_FromLong
512 #define PyInt_FromSize_t PyLong_FromSize_t
513 #define PyInt_FromSsize_t PyLong_FromSsize_t
514 #define PyInt_AsLong PyLong_AsLong
515 #define PyInt_AS_LONG PyLong_AS_LONG
516 #define PyInt_AsSsize_t PyLong_AsSsize_t
517 #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask
518 #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
519 #define PyNumber_Int PyNumber_Long
520 #endif
521 #if PY_MAJOR_VERSION >= 3
522 #define PyBoolObject PyLongObject
523 #endif
524 #if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
525 #ifndef PyUnicode_InternFromString
526 #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
527 #endif
528 #endif
529 #if PY_VERSION_HEX < 0x030200A4
530 typedef long Py_hash_t;
531 #define __Pyx_PyInt_FromHash_t PyInt_FromLong
532 #define __Pyx_PyInt_AsHash_t PyInt_AsLong
533 #else
534 #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
535 #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t
536 #endif
537 #if PY_MAJOR_VERSION >= 3
538 #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : (Py_INCREF(func), func))
539 #else
540 #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
541 #endif
542 #if CYTHON_USE_ASYNC_SLOTS
543 #if PY_VERSION_HEX >= 0x030500B1
544 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
545 #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
546 #else
547 #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
548 #endif
549 #else
550 #define __Pyx_PyType_AsAsync(obj) NULL
551 #endif
552 #ifndef __Pyx_PyAsyncMethodsStruct
553 typedef struct {
554 unaryfunc am_await;
555 unaryfunc am_aiter;
556 unaryfunc am_anext;
557 } __Pyx_PyAsyncMethodsStruct;
558 #endif
559
560 #if defined(WIN32) || defined(MS_WINDOWS)
561 #define _USE_MATH_DEFINES
562 #endif
563 #include <math.h>
564 #ifdef NAN
565 #define __PYX_NAN() ((float) NAN)
566 #else
__PYX_NAN()567 static CYTHON_INLINE float __PYX_NAN() {
568 float value;
569 memset(&value, 0xFF, sizeof(value));
570 return value;
571 }
572 #endif
573 #if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
574 #define __Pyx_truncl trunc
575 #else
576 #define __Pyx_truncl truncl
577 #endif
578
579
580 #define __PYX_ERR(f_index, lineno, Ln_error) \
581 { \
582 __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \
583 }
584
585 #ifndef __PYX_EXTERN_C
586 #ifdef __cplusplus
587 #define __PYX_EXTERN_C extern "C"
588 #else
589 #define __PYX_EXTERN_C extern
590 #endif
591 #endif
592
593 #define __PYX_HAVE__MACS2__IO__ScoreTrack
594 #define __PYX_HAVE_API__MACS2__IO__ScoreTrack
595 /* Early includes */
596 #include <string.h>
597 #include <stdio.h>
598 #include "numpy/arrayobject.h"
599 #include "numpy/ufuncobject.h"
600 #include "pythread.h"
601 #include <math.h>
602 #ifdef _OPENMP
603 #include <omp.h>
604 #endif /* _OPENMP */
605
606 #if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS)
607 #define CYTHON_WITHOUT_ASSERTIONS
608 #endif
609
610 typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
611 const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;
612
613 #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
614 #define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0
615 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8)
616 #define __PYX_DEFAULT_STRING_ENCODING ""
617 #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
618 #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
619 #define __Pyx_uchar_cast(c) ((unsigned char)c)
620 #define __Pyx_long_cast(x) ((long)x)
621 #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\
622 (sizeof(type) < sizeof(Py_ssize_t)) ||\
623 (sizeof(type) > sizeof(Py_ssize_t) &&\
624 likely(v < (type)PY_SSIZE_T_MAX ||\
625 v == (type)PY_SSIZE_T_MAX) &&\
626 (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
627 v == (type)PY_SSIZE_T_MIN))) ||\
628 (sizeof(type) == sizeof(Py_ssize_t) &&\
629 (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
630 v == (type)PY_SSIZE_T_MAX))) )
__Pyx_is_valid_index(Py_ssize_t i,Py_ssize_t limit)631 static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) {
632 return (size_t) i < (size_t) limit;
633 }
634 #if defined (__cplusplus) && __cplusplus >= 201103L
635 #include <cstdlib>
636 #define __Pyx_sst_abs(value) std::abs(value)
637 #elif SIZEOF_INT >= SIZEOF_SIZE_T
638 #define __Pyx_sst_abs(value) abs(value)
639 #elif SIZEOF_LONG >= SIZEOF_SIZE_T
640 #define __Pyx_sst_abs(value) labs(value)
641 #elif defined (_MSC_VER)
642 #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value))
643 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
644 #define __Pyx_sst_abs(value) llabs(value)
645 #elif defined (__GNUC__)
646 #define __Pyx_sst_abs(value) __builtin_llabs(value)
647 #else
648 #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
649 #endif
650 static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
651 static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
652 #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
653 #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
654 #define __Pyx_PyBytes_FromString PyBytes_FromString
655 #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
656 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
657 #if PY_MAJOR_VERSION < 3
658 #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString
659 #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
660 #else
661 #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString
662 #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
663 #endif
664 #define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s))
665 #define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s))
666 #define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s))
667 #define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s))
668 #define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s))
669 #define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s))
670 #define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s))
671 #define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s))
672 #define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s))
673 #define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s))
674 #define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s))
675 #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s)
676 #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s)
677 #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s)
678 #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s)
679 #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
__Pyx_Py_UNICODE_strlen(const Py_UNICODE * u)680 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) {
681 const Py_UNICODE *u_end = u;
682 while (*u_end++) ;
683 return (size_t)(u_end - u - 1);
684 }
685 #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
686 #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
687 #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
688 #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
689 #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
690 static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b);
691 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
692 static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*);
693 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
694 #define __Pyx_PySequence_Tuple(obj)\
695 (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj))
696 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
697 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
698 #if CYTHON_ASSUME_SAFE_MACROS
699 #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
700 #else
701 #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
702 #endif
703 #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
704 #if PY_MAJOR_VERSION >= 3
705 #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
706 #else
707 #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
708 #endif
709 #define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
710 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
711 static int __Pyx_sys_getdefaultencoding_not_ascii;
__Pyx_init_sys_getdefaultencoding_params(void)712 static int __Pyx_init_sys_getdefaultencoding_params(void) {
713 PyObject* sys;
714 PyObject* default_encoding = NULL;
715 PyObject* ascii_chars_u = NULL;
716 PyObject* ascii_chars_b = NULL;
717 const char* default_encoding_c;
718 sys = PyImport_ImportModule("sys");
719 if (!sys) goto bad;
720 default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
721 Py_DECREF(sys);
722 if (!default_encoding) goto bad;
723 default_encoding_c = PyBytes_AsString(default_encoding);
724 if (!default_encoding_c) goto bad;
725 if (strcmp(default_encoding_c, "ascii") == 0) {
726 __Pyx_sys_getdefaultencoding_not_ascii = 0;
727 } else {
728 char ascii_chars[128];
729 int c;
730 for (c = 0; c < 128; c++) {
731 ascii_chars[c] = c;
732 }
733 __Pyx_sys_getdefaultencoding_not_ascii = 1;
734 ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
735 if (!ascii_chars_u) goto bad;
736 ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
737 if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
738 PyErr_Format(
739 PyExc_ValueError,
740 "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
741 default_encoding_c);
742 goto bad;
743 }
744 Py_DECREF(ascii_chars_u);
745 Py_DECREF(ascii_chars_b);
746 }
747 Py_DECREF(default_encoding);
748 return 0;
749 bad:
750 Py_XDECREF(default_encoding);
751 Py_XDECREF(ascii_chars_u);
752 Py_XDECREF(ascii_chars_b);
753 return -1;
754 }
755 #endif
756 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
757 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
758 #else
759 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
760 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
761 static char* __PYX_DEFAULT_STRING_ENCODING;
__Pyx_init_sys_getdefaultencoding_params(void)762 static int __Pyx_init_sys_getdefaultencoding_params(void) {
763 PyObject* sys;
764 PyObject* default_encoding = NULL;
765 char* default_encoding_c;
766 sys = PyImport_ImportModule("sys");
767 if (!sys) goto bad;
768 default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
769 Py_DECREF(sys);
770 if (!default_encoding) goto bad;
771 default_encoding_c = PyBytes_AsString(default_encoding);
772 if (!default_encoding_c) goto bad;
773 __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1);
774 if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
775 strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
776 Py_DECREF(default_encoding);
777 return 0;
778 bad:
779 Py_XDECREF(default_encoding);
780 return -1;
781 }
782 #endif
783 #endif
784
785
786 /* Test for GCC > 2.95 */
787 #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
788 #define likely(x) __builtin_expect(!!(x), 1)
789 #define unlikely(x) __builtin_expect(!!(x), 0)
790 #else /* !__GNUC__ or GCC < 2.95 */
791 #define likely(x) (x)
792 #define unlikely(x) (x)
793 #endif /* __GNUC__ */
__Pyx_pretend_to_initialize(void * ptr)794 static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; }
795
796 static PyObject *__pyx_m = NULL;
797 static PyObject *__pyx_d;
798 static PyObject *__pyx_b;
799 static PyObject *__pyx_cython_runtime = NULL;
800 static PyObject *__pyx_empty_tuple;
801 static PyObject *__pyx_empty_bytes;
802 static PyObject *__pyx_empty_unicode;
803 static int __pyx_lineno;
804 static int __pyx_clineno = 0;
805 static const char * __pyx_cfilenm= __FILE__;
806 static const char *__pyx_filename;
807
808 /* Header.proto */
809 #if !defined(CYTHON_CCOMPLEX)
810 #if defined(__cplusplus)
811 #define CYTHON_CCOMPLEX 1
812 #elif defined(_Complex_I)
813 #define CYTHON_CCOMPLEX 1
814 #else
815 #define CYTHON_CCOMPLEX 0
816 #endif
817 #endif
818 #if CYTHON_CCOMPLEX
819 #ifdef __cplusplus
820 #include <complex>
821 #else
822 #include <complex.h>
823 #endif
824 #endif
825 #if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
826 #undef _Complex_I
827 #define _Complex_I 1.0fj
828 #endif
829
830
831 static const char *__pyx_f[] = {
832 "MACS2/IO/ScoreTrack.pyx",
833 "stringsource",
834 "__init__.pxd",
835 "type.pxd",
836 "bool.pxd",
837 "complex.pxd",
838 };
839 /* BufferFormatStructs.proto */
840 #define IS_UNSIGNED(type) (((type) -1) > 0)
841 struct __Pyx_StructField_;
842 #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0)
843 typedef struct {
844 const char* name;
845 struct __Pyx_StructField_* fields;
846 size_t size;
847 size_t arraysize[8];
848 int ndim;
849 char typegroup;
850 char is_unsigned;
851 int flags;
852 } __Pyx_TypeInfo;
853 typedef struct __Pyx_StructField_ {
854 __Pyx_TypeInfo* type;
855 const char* name;
856 size_t offset;
857 } __Pyx_StructField;
858 typedef struct {
859 __Pyx_StructField* field;
860 size_t parent_offset;
861 } __Pyx_BufFmt_StackElem;
862 typedef struct {
863 __Pyx_StructField root;
864 __Pyx_BufFmt_StackElem* head;
865 size_t fmt_offset;
866 size_t new_count, enc_count;
867 size_t struct_alignment;
868 int is_complex;
869 char enc_type;
870 char new_packmode;
871 char enc_packmode;
872 char is_valid_array;
873 } __Pyx_BufFmt_Context;
874
875
876 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":776
877 * # in Cython to enable them only on the right systems.
878 *
879 * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
880 * ctypedef npy_int16 int16_t
881 * ctypedef npy_int32 int32_t
882 */
883 typedef npy_int8 __pyx_t_5numpy_int8_t;
884
885 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":777
886 *
887 * ctypedef npy_int8 int8_t
888 * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
889 * ctypedef npy_int32 int32_t
890 * ctypedef npy_int64 int64_t
891 */
892 typedef npy_int16 __pyx_t_5numpy_int16_t;
893
894 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":778
895 * ctypedef npy_int8 int8_t
896 * ctypedef npy_int16 int16_t
897 * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
898 * ctypedef npy_int64 int64_t
899 * #ctypedef npy_int96 int96_t
900 */
901 typedef npy_int32 __pyx_t_5numpy_int32_t;
902
903 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":779
904 * ctypedef npy_int16 int16_t
905 * ctypedef npy_int32 int32_t
906 * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
907 * #ctypedef npy_int96 int96_t
908 * #ctypedef npy_int128 int128_t
909 */
910 typedef npy_int64 __pyx_t_5numpy_int64_t;
911
912 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":783
913 * #ctypedef npy_int128 int128_t
914 *
915 * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
916 * ctypedef npy_uint16 uint16_t
917 * ctypedef npy_uint32 uint32_t
918 */
919 typedef npy_uint8 __pyx_t_5numpy_uint8_t;
920
921 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":784
922 *
923 * ctypedef npy_uint8 uint8_t
924 * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
925 * ctypedef npy_uint32 uint32_t
926 * ctypedef npy_uint64 uint64_t
927 */
928 typedef npy_uint16 __pyx_t_5numpy_uint16_t;
929
930 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":785
931 * ctypedef npy_uint8 uint8_t
932 * ctypedef npy_uint16 uint16_t
933 * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
934 * ctypedef npy_uint64 uint64_t
935 * #ctypedef npy_uint96 uint96_t
936 */
937 typedef npy_uint32 __pyx_t_5numpy_uint32_t;
938
939 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":786
940 * ctypedef npy_uint16 uint16_t
941 * ctypedef npy_uint32 uint32_t
942 * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
943 * #ctypedef npy_uint96 uint96_t
944 * #ctypedef npy_uint128 uint128_t
945 */
946 typedef npy_uint64 __pyx_t_5numpy_uint64_t;
947
948 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":790
949 * #ctypedef npy_uint128 uint128_t
950 *
951 * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
952 * ctypedef npy_float64 float64_t
953 * #ctypedef npy_float80 float80_t
954 */
955 typedef npy_float32 __pyx_t_5numpy_float32_t;
956
957 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":791
958 *
959 * ctypedef npy_float32 float32_t
960 * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
961 * #ctypedef npy_float80 float80_t
962 * #ctypedef npy_float128 float128_t
963 */
964 typedef npy_float64 __pyx_t_5numpy_float64_t;
965
966 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":800
967 * # The int types are mapped a bit surprising --
968 * # numpy.int corresponds to 'l' and numpy.long to 'q'
969 * ctypedef npy_long int_t # <<<<<<<<<<<<<<
970 * ctypedef npy_longlong long_t
971 * ctypedef npy_longlong longlong_t
972 */
973 typedef npy_long __pyx_t_5numpy_int_t;
974
975 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":801
976 * # numpy.int corresponds to 'l' and numpy.long to 'q'
977 * ctypedef npy_long int_t
978 * ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
979 * ctypedef npy_longlong longlong_t
980 *
981 */
982 typedef npy_longlong __pyx_t_5numpy_long_t;
983
984 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":802
985 * ctypedef npy_long int_t
986 * ctypedef npy_longlong long_t
987 * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
988 *
989 * ctypedef npy_ulong uint_t
990 */
991 typedef npy_longlong __pyx_t_5numpy_longlong_t;
992
993 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":804
994 * ctypedef npy_longlong longlong_t
995 *
996 * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
997 * ctypedef npy_ulonglong ulong_t
998 * ctypedef npy_ulonglong ulonglong_t
999 */
1000 typedef npy_ulong __pyx_t_5numpy_uint_t;
1001
1002 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":805
1003 *
1004 * ctypedef npy_ulong uint_t
1005 * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
1006 * ctypedef npy_ulonglong ulonglong_t
1007 *
1008 */
1009 typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
1010
1011 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":806
1012 * ctypedef npy_ulong uint_t
1013 * ctypedef npy_ulonglong ulong_t
1014 * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
1015 *
1016 * ctypedef npy_intp intp_t
1017 */
1018 typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
1019
1020 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":808
1021 * ctypedef npy_ulonglong ulonglong_t
1022 *
1023 * ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
1024 * ctypedef npy_uintp uintp_t
1025 *
1026 */
1027 typedef npy_intp __pyx_t_5numpy_intp_t;
1028
1029 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":809
1030 *
1031 * ctypedef npy_intp intp_t
1032 * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
1033 *
1034 * ctypedef npy_double float_t
1035 */
1036 typedef npy_uintp __pyx_t_5numpy_uintp_t;
1037
1038 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":811
1039 * ctypedef npy_uintp uintp_t
1040 *
1041 * ctypedef npy_double float_t # <<<<<<<<<<<<<<
1042 * ctypedef npy_double double_t
1043 * ctypedef npy_longdouble longdouble_t
1044 */
1045 typedef npy_double __pyx_t_5numpy_float_t;
1046
1047 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":812
1048 *
1049 * ctypedef npy_double float_t
1050 * ctypedef npy_double double_t # <<<<<<<<<<<<<<
1051 * ctypedef npy_longdouble longdouble_t
1052 *
1053 */
1054 typedef npy_double __pyx_t_5numpy_double_t;
1055
1056 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":813
1057 * ctypedef npy_double float_t
1058 * ctypedef npy_double double_t
1059 * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
1060 *
1061 * ctypedef npy_cfloat cfloat_t
1062 */
1063 typedef npy_longdouble __pyx_t_5numpy_longdouble_t;
1064 /* Declarations.proto */
1065 #if CYTHON_CCOMPLEX
1066 #ifdef __cplusplus
1067 typedef ::std::complex< float > __pyx_t_float_complex;
1068 #else
1069 typedef float _Complex __pyx_t_float_complex;
1070 #endif
1071 #else
1072 typedef struct { float real, imag; } __pyx_t_float_complex;
1073 #endif
1074 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float);
1075
1076 /* Declarations.proto */
1077 #if CYTHON_CCOMPLEX
1078 #ifdef __cplusplus
1079 typedef ::std::complex< double > __pyx_t_double_complex;
1080 #else
1081 typedef double _Complex __pyx_t_double_complex;
1082 #endif
1083 #else
1084 typedef struct { double real, imag; } __pyx_t_double_complex;
1085 #endif
1086 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double);
1087
1088
1089 /*--- Type declarations ---*/
1090 struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII;
1091 struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores;
1092
1093 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":815
1094 * ctypedef npy_longdouble longdouble_t
1095 *
1096 * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
1097 * ctypedef npy_cdouble cdouble_t
1098 * ctypedef npy_clongdouble clongdouble_t
1099 */
1100 typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
1101
1102 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":816
1103 *
1104 * ctypedef npy_cfloat cfloat_t
1105 * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
1106 * ctypedef npy_clongdouble clongdouble_t
1107 *
1108 */
1109 typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
1110
1111 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":817
1112 * ctypedef npy_cfloat cfloat_t
1113 * ctypedef npy_cdouble cdouble_t
1114 * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
1115 *
1116 * ctypedef npy_cdouble complex_t
1117 */
1118 typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
1119
1120 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":819
1121 * ctypedef npy_clongdouble clongdouble_t
1122 *
1123 * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
1124 *
1125 * cdef inline object PyArray_MultiIterNew1(a):
1126 */
1127 typedef npy_cdouble __pyx_t_5numpy_complex_t;
1128 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_write_bedGraph;
1129 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_peaks;
1130 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak;
1131 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak2;
1132 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_broadpeaks;
1133 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_write_bedGraph;
1134 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_call_peaks;
1135
1136 /* "MACS2/IO/ScoreTrack.pyx":931
1137 * return
1138 *
1139 * cpdef write_bedGraph ( self, fhd, str name, str description, short column = 3): # <<<<<<<<<<<<<<
1140 * """Write all data to fhd in bedGraph Format.
1141 *
1142 */
1143 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_write_bedGraph {
1144 int __pyx_n;
1145 short column;
1146 };
1147
1148 /* "MACS2/IO/ScoreTrack.pyx":978
1149 * return True
1150 *
1151 * cpdef call_peaks (self, float64_t cutoff=5.0, int32_t min_length=200, int32_t max_gap=50, bool call_summits=False): # <<<<<<<<<<<<<<
1152 * """This function try to find regions within which, scores
1153 * are continuously higher than a given cutoff.
1154 */
1155 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_peaks {
1156 int __pyx_n;
1157 __pyx_t_5numpy_float64_t cutoff;
1158 __pyx_t_5numpy_int32_t min_length;
1159 __pyx_t_5numpy_int32_t max_gap;
1160 PyBoolObject *call_summits;
1161 };
1162
1163 /* "MACS2/IO/ScoreTrack.pyx":1051
1164 * return peaks
1165 *
1166 * cdef bool __close_peak (self, list peak_content, peaks, int32_t min_length, # <<<<<<<<<<<<<<
1167 * bytes chrom, int32_t smoothlen=0):
1168 * """Close the peak region, output peak boundaries, peak summit
1169 */
1170 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak {
1171 int __pyx_n;
1172 __pyx_t_5numpy_int32_t smoothlen;
1173 };
1174
1175 /* "MACS2/IO/ScoreTrack.pyx":1102
1176 * return True
1177 *
1178 * cdef bool __close_peak2 (self, list peak_content, peaks, int32_t min_length, # <<<<<<<<<<<<<<
1179 * bytes chrom, int32_t smoothlen=51,
1180 * float64_t min_valley = 0.9):
1181 */
1182 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak2 {
1183 int __pyx_n;
1184 __pyx_t_5numpy_int32_t smoothlen;
1185 __pyx_t_5numpy_float64_t min_valley;
1186 };
1187
1188 /* "MACS2/IO/ScoreTrack.pyx":1191
1189 * return t
1190 *
1191 * cpdef call_broadpeaks (self, float64_t lvl1_cutoff=5.0, float64_t lvl2_cutoff=1.0, int32_t min_length=200, int32_t lvl1_max_gap=50, int32_t lvl2_max_gap=400): # <<<<<<<<<<<<<<
1192 * """This function try to find enriched regions within which,
1193 * scores are continuously higher than a given cutoff for level
1194 */
1195 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_broadpeaks {
1196 int __pyx_n;
1197 __pyx_t_5numpy_float64_t lvl1_cutoff;
1198 __pyx_t_5numpy_float64_t lvl2_cutoff;
1199 __pyx_t_5numpy_int32_t min_length;
1200 __pyx_t_5numpy_int32_t lvl1_max_gap;
1201 __pyx_t_5numpy_int32_t lvl2_max_gap;
1202 };
1203
1204 /* "MACS2/IO/ScoreTrack.pyx":1512
1205 * return l
1206 *
1207 * cpdef write_bedGraph ( self, fhd, str name, str description, short column = 3): # <<<<<<<<<<<<<<
1208 * """Write all data to fhd in bedGraph Format.
1209 *
1210 */
1211 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_write_bedGraph {
1212 int __pyx_n;
1213 short column;
1214 };
1215
1216 /* "MACS2/IO/ScoreTrack.pyx":1592
1217 * return True
1218 *
1219 * cpdef tuple call_peaks (self, float64_t cutoff=3, int32_t min_length=200, int32_t max_gap = 100, # <<<<<<<<<<<<<<
1220 * bool call_summits=False):
1221 * """This function try to find regions within which, scores
1222 */
1223 struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_call_peaks {
1224 int __pyx_n;
1225 __pyx_t_5numpy_float64_t cutoff;
1226 __pyx_t_5numpy_int32_t min_length;
1227 __pyx_t_5numpy_int32_t max_gap;
1228 PyBoolObject *call_summits;
1229 };
1230
1231 /* "MACS2/IO/ScoreTrack.pyx":399
1232 * return ret
1233 *
1234 * cdef class scoreTrackII: # <<<<<<<<<<<<<<
1235 * """Class for scoreGraph type data. Modified from scoreTrackI. The
1236 * difference is that we store a single score data, not
1237 */
1238 struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII {
1239 PyObject_HEAD
1240 struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_vtab;
1241 PyObject *data;
1242 PyObject *data_stderr;
1243 PyObject *datalength;
1244 PyBoolObject *trackline;
1245 PyBoolObject *stderr_on;
1246 __pyx_t_5numpy_float64_t treat_edm;
1247 __pyx_t_5numpy_float64_t ctrl_edm;
1248 char scoring_method;
1249 char normalization_method;
1250 __pyx_t_5numpy_float64_t pseudocount;
1251 __pyx_t_5numpy_float64_t cutoff;
1252 PyObject *pvalue_stat;
1253 };
1254
1255
1256 /* "MACS2/IO/ScoreTrack.pyx":1297
1257 * return bpeaks
1258 *
1259 * cdef class TwoConditionScores: # <<<<<<<<<<<<<<
1260 * """Class for saving two condition comparison scores.
1261 * """
1262 */
1263 struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores {
1264 PyObject_HEAD
1265 struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_vtab;
1266 PyObject *data;
1267 PyObject *datalength;
1268 __pyx_t_5numpy_float64_t cond1_factor;
1269 __pyx_t_5numpy_float64_t cond2_factor;
1270 __pyx_t_5numpy_float64_t pseudocount;
1271 __pyx_t_5numpy_float64_t cutoff;
1272 PyObject *t1bdg;
1273 PyObject *c1bdg;
1274 PyObject *t2bdg;
1275 PyObject *c2bdg;
1276 PyObject *pvalue_stat1;
1277 PyObject *pvalue_stat2;
1278 PyObject *pvalue_stat3;
1279 };
1280
1281
1282
1283 /* "MACS2/IO/ScoreTrack.pyx":399
1284 * return ret
1285 *
1286 * cdef class scoreTrackII: # <<<<<<<<<<<<<<
1287 * """Class for scoreGraph type data. Modified from scoreTrackI. The
1288 * difference is that we store a single score data, not
1289 */
1290
1291 struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII {
1292 PyObject *(*set_pseudocount)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, __pyx_t_5numpy_float64_t, int __pyx_skip_dispatch);
1293 PyObject *(*enable_trackline)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch);
1294 PyObject *(*add_chromosome)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, __pyx_t_5numpy_int32_t, int __pyx_skip_dispatch);
1295 PyObject *(*add)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t, int __pyx_skip_dispatch);
1296 PyObject *(*finalize)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch);
1297 PyObject *(*get_data_by_chr)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, int __pyx_skip_dispatch);
1298 PyObject *(*get_chr_names)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch);
1299 PyObject *(*change_normalization_method)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, char, int __pyx_skip_dispatch);
1300 PyObject *(*normalize)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t);
1301 PyObject *(*change_score_method)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, char, int __pyx_skip_dispatch);
1302 PyObject *(*compute_pvalue)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1303 PyObject *(*compute_qvalue)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1304 PyObject *(*make_pq_table)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch);
1305 PyObject *(*compute_likelihood)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1306 PyObject *(*compute_sym_likelihood)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1307 PyObject *(*compute_logFE)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1308 PyObject *(*compute_foldenrichment)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1309 PyObject *(*compute_subtraction)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1310 PyObject *(*compute_SPMR)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1311 PyObject *(*compute_max)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1312 PyObject *(*write_bedGraph)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, PyObject *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_write_bedGraph *__pyx_optional_args);
1313 PyObject *(*call_peaks)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_peaks *__pyx_optional_args);
1314 PyBoolObject *(*__pyx___close_peak)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, PyObject *, __pyx_t_5numpy_int32_t, PyObject *, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak *__pyx_optional_args);
1315 PyBoolObject *(*__pyx___close_peak2)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, PyObject *, __pyx_t_5numpy_int32_t, PyObject *, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak2 *__pyx_optional_args);
1316 __pyx_t_5numpy_int64_t (*total)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *);
1317 PyObject *(*call_broadpeaks)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_broadpeaks *__pyx_optional_args);
1318 };
1319 static struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_vtabptr_5MACS2_2IO_10ScoreTrack_scoreTrackII;
1320
1321
1322 /* "MACS2/IO/ScoreTrack.pyx":1297
1323 * return bpeaks
1324 *
1325 * cdef class TwoConditionScores: # <<<<<<<<<<<<<<
1326 * """Class for saving two condition comparison scores.
1327 * """
1328 */
1329
1330 struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_TwoConditionScores {
1331 PyObject *(*set_pseudocount)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, __pyx_t_5numpy_float64_t, int __pyx_skip_dispatch);
1332 PyObject *(*build)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, int __pyx_skip_dispatch);
1333 PyObject *(*build_chromosome)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *);
1334 PyObject *(*add_chromosome)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, __pyx_t_5numpy_int32_t);
1335 PyObject *(*add)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t);
1336 PyObject *(*finalize)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, int __pyx_skip_dispatch);
1337 PyObject *(*get_data_by_chr)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, int __pyx_skip_dispatch);
1338 PyObject *(*get_chr_names)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, int __pyx_skip_dispatch);
1339 PyObject *(*write_bedGraph)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, PyObject *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_write_bedGraph *__pyx_optional_args);
1340 PyObject *(*write_matrix)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, PyObject *, PyObject *, int __pyx_skip_dispatch);
1341 PyObject *(*call_peaks)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_call_peaks *__pyx_optional_args);
1342 PyObject *(*__pyx___add_a_peak)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, PyObject *, PyArrayObject *, PyArrayObject *, PyArrayObject *, PyArrayObject *, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t);
1343 __pyx_t_5numpy_float64_t (*mean_from_peakcontent)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *);
1344 __pyx_t_5numpy_int64_t (*total)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *);
1345 };
1346 static struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_vtabptr_5MACS2_2IO_10ScoreTrack_TwoConditionScores;
1347
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1373 }
1374 #else
1375 #define __Pyx_RefNannySetupContext(name, acquire_gil)\
1376 __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__)
1377 #endif
1378 #define __Pyx_RefNannyFinishContext()\
1379 __Pyx_RefNanny->FinishContext(&__pyx_refnanny)
1380 #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1381 #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1382 #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1383 #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1384 #define __Pyx_XINCREF(r) do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0)
1385 #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0)
1386 #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0)
1387 #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0)
1388 #else
1389 #define __Pyx_RefNannyDeclarations
1390 #define __Pyx_RefNannySetupContext(name, acquire_gil)
1391 #define __Pyx_RefNannyFinishContext()
1392 #define __Pyx_INCREF(r) Py_INCREF(r)
1393 #define __Pyx_DECREF(r) Py_DECREF(r)
1394 #define __Pyx_GOTREF(r)
1395 #define __Pyx_GIVEREF(r)
1396 #define __Pyx_XINCREF(r) Py_XINCREF(r)
1397 #define __Pyx_XDECREF(r) Py_XDECREF(r)
1398 #define __Pyx_XGOTREF(r)
1399 #define __Pyx_XGIVEREF(r)
1400 #endif
1401 #define __Pyx_XDECREF_SET(r, v) do {\
1402 PyObject *tmp = (PyObject *) r;\
1403 r = v; __Pyx_XDECREF(tmp);\
1404 } while (0)
1405 #define __Pyx_DECREF_SET(r, v) do {\
1406 PyObject *tmp = (PyObject *) r;\
1407 r = v; __Pyx_DECREF(tmp);\
1408 } while (0)
1409 #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
1410 #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)
1411
1412 /* PyObjectGetAttrStr.proto */
1413 #if CYTHON_USE_TYPE_SLOTS
1414 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name);
1415 #else
1416 #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
1417 #endif
1418
1419 /* GetBuiltinName.proto */
1420 static PyObject *__Pyx_GetBuiltinName(PyObject *name);
1421
1422 /* PyThreadStateGet.proto */
1423 #if CYTHON_FAST_THREAD_STATE
1424 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
1425 #define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current;
1426 #define __Pyx_PyErr_Occurred() __pyx_tstate->curexc_type
1427 #else
1428 #define __Pyx_PyThreadState_declare
1429 #define __Pyx_PyThreadState_assign
1430 #define __Pyx_PyErr_Occurred() PyErr_Occurred()
1431 #endif
1432
1433 /* PyErrFetchRestore.proto */
1434 #if CYTHON_FAST_THREAD_STATE
1435 #define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL)
1436 #define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb)
1437 #define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb)
1438 #define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb)
1439 #define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb)
1440 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1441 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1442 #if CYTHON_COMPILING_IN_CPYTHON
1443 #define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL))
1444 #else
1445 #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
1446 #endif
1447 #else
1448 #define __Pyx_PyErr_Clear() PyErr_Clear()
1449 #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
1450 #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb)
1451 #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb)
1452 #define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb)
1453 #define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb)
1454 #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb)
1455 #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb)
1456 #endif
1457
1458 /* Profile.proto */
1459 #ifndef CYTHON_PROFILE
1460 #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON
1461 #define CYTHON_PROFILE 0
1462 #else
1463 #define CYTHON_PROFILE 1
1464 #endif
1465 #endif
1466 #ifndef CYTHON_TRACE_NOGIL
1467 #define CYTHON_TRACE_NOGIL 0
1468 #else
1469 #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE)
1470 #define CYTHON_TRACE 1
1471 #endif
1472 #endif
1473 #ifndef CYTHON_TRACE
1474 #define CYTHON_TRACE 0
1475 #endif
1476 #if CYTHON_TRACE
1477 #undef CYTHON_PROFILE_REUSE_FRAME
1478 #endif
1479 #ifndef CYTHON_PROFILE_REUSE_FRAME
1480 #define CYTHON_PROFILE_REUSE_FRAME 0
1481 #endif
1482 #if CYTHON_PROFILE || CYTHON_TRACE
1483 #include "compile.h"
1484 #include "frameobject.h"
1485 #include "traceback.h"
1486 #if CYTHON_PROFILE_REUSE_FRAME
1487 #define CYTHON_FRAME_MODIFIER static
1488 #define CYTHON_FRAME_DEL(frame)
1489 #else
1490 #define CYTHON_FRAME_MODIFIER
1491 #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame)
1492 #endif
1493 #define __Pyx_TraceDeclarations\
1494 static PyCodeObject *__pyx_frame_code = NULL;\
1495 CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\
1496 int __Pyx_use_tracing = 0;
1497 #define __Pyx_TraceFrameInit(codeobj)\
1498 if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj;
1499 #ifdef WITH_THREAD
1500 #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\
1501 if (nogil) {\
1502 if (CYTHON_TRACE_NOGIL) {\
1503 PyThreadState *tstate;\
1504 PyGILState_STATE state = PyGILState_Ensure();\
1505 tstate = __Pyx_PyThreadState_Current;\
1506 if (unlikely(tstate->use_tracing) && !tstate->tracing &&\
1507 (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\
1508 __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\
1509 }\
1510 PyGILState_Release(state);\
1511 if (unlikely(__Pyx_use_tracing < 0)) goto_error;\
1512 }\
1513 } else {\
1514 PyThreadState* tstate = PyThreadState_GET();\
1515 if (unlikely(tstate->use_tracing) && !tstate->tracing &&\
1516 (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\
1517 __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\
1518 if (unlikely(__Pyx_use_tracing < 0)) goto_error;\
1519 }\
1520 }
1521 #else
1522 #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\
1523 { PyThreadState* tstate = PyThreadState_GET();\
1524 if (unlikely(tstate->use_tracing) && !tstate->tracing &&\
1525 (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\
1526 __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\
1527 if (unlikely(__Pyx_use_tracing < 0)) goto_error;\
1528 }\
1529 }
1530 #endif
1531 #define __Pyx_TraceException()\
1532 if (likely(!__Pyx_use_tracing)); else {\
1533 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
1534 if (tstate->use_tracing &&\
1535 (tstate->c_profilefunc || (CYTHON_TRACE && tstate->c_tracefunc))) {\
1536 tstate->tracing++;\
1537 tstate->use_tracing = 0;\
1538 PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\
1539 if (exc_info) {\
1540 if (CYTHON_TRACE && tstate->c_tracefunc)\
1541 tstate->c_tracefunc(\
1542 tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\
1543 tstate->c_profilefunc(\
1544 tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\
1545 Py_DECREF(exc_info);\
1546 }\
1547 tstate->use_tracing = 1;\
1548 tstate->tracing--;\
1549 }\
1550 }
__Pyx_call_return_trace_func(PyThreadState * tstate,PyFrameObject * frame,PyObject * result)1551 static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) {
1552 PyObject *type, *value, *traceback;
1553 __Pyx_ErrFetchInState(tstate, &type, &value, &traceback);
1554 tstate->tracing++;
1555 tstate->use_tracing = 0;
1556 if (CYTHON_TRACE && tstate->c_tracefunc)
1557 tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result);
1558 if (tstate->c_profilefunc)
1559 tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result);
1560 CYTHON_FRAME_DEL(frame);
1561 tstate->use_tracing = 1;
1562 tstate->tracing--;
1563 __Pyx_ErrRestoreInState(tstate, type, value, traceback);
1564 }
1565 #ifdef WITH_THREAD
1566 #define __Pyx_TraceReturn(result, nogil)\
1567 if (likely(!__Pyx_use_tracing)); else {\
1568 if (nogil) {\
1569 if (CYTHON_TRACE_NOGIL) {\
1570 PyThreadState *tstate;\
1571 PyGILState_STATE state = PyGILState_Ensure();\
1572 tstate = __Pyx_PyThreadState_Current;\
1573 if (tstate->use_tracing) {\
1574 __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\
1575 }\
1576 PyGILState_Release(state);\
1577 }\
1578 } else {\
1579 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
1580 if (tstate->use_tracing) {\
1581 __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\
1582 }\
1583 }\
1584 }
1585 #else
1586 #define __Pyx_TraceReturn(result, nogil)\
1587 if (likely(!__Pyx_use_tracing)); else {\
1588 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
1589 if (tstate->use_tracing) {\
1590 __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\
1591 }\
1592 }
1593 #endif
1594 static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno);
1595 static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, PyThreadState* tstate, const char *funcname, const char *srcfile, int firstlineno);
1596 #else
1597 #define __Pyx_TraceDeclarations
1598 #define __Pyx_TraceFrameInit(codeobj)
1599 #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error;
1600 #define __Pyx_TraceException()
1601 #define __Pyx_TraceReturn(result, nogil)
1602 #endif
1603 #if CYTHON_TRACE
__Pyx_call_line_trace_func(PyThreadState * tstate,PyFrameObject * frame,int lineno)1604 static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) {
1605 int ret;
1606 PyObject *type, *value, *traceback;
1607 __Pyx_ErrFetchInState(tstate, &type, &value, &traceback);
1608 __Pyx_PyFrame_SetLineNumber(frame, lineno);
1609 tstate->tracing++;
1610 tstate->use_tracing = 0;
1611 ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL);
1612 tstate->use_tracing = 1;
1613 tstate->tracing--;
1614 if (likely(!ret)) {
1615 __Pyx_ErrRestoreInState(tstate, type, value, traceback);
1616 } else {
1617 Py_XDECREF(type);
1618 Py_XDECREF(value);
1619 Py_XDECREF(traceback);
1620 }
1621 return ret;
1622 }
1623 #ifdef WITH_THREAD
1624 #define __Pyx_TraceLine(lineno, nogil, goto_error)\
1625 if (likely(!__Pyx_use_tracing)); else {\
1626 if (nogil) {\
1627 if (CYTHON_TRACE_NOGIL) {\
1628 int ret = 0;\
1629 PyThreadState *tstate;\
1630 PyGILState_STATE state = PyGILState_Ensure();\
1631 tstate = __Pyx_PyThreadState_Current;\
1632 if (unlikely(tstate->use_tracing && tstate->c_tracefunc && __pyx_frame->f_trace)) {\
1633 ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\
1634 }\
1635 PyGILState_Release(state);\
1636 if (unlikely(ret)) goto_error;\
1637 }\
1638 } else {\
1639 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
1640 if (unlikely(tstate->use_tracing && tstate->c_tracefunc && __pyx_frame->f_trace)) {\
1641 int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\
1642 if (unlikely(ret)) goto_error;\
1643 }\
1644 }\
1645 }
1646 #else
1647 #define __Pyx_TraceLine(lineno, nogil, goto_error)\
1648 if (likely(!__Pyx_use_tracing)); else {\
1649 PyThreadState* tstate = __Pyx_PyThreadState_Current;\
1650 if (unlikely(tstate->use_tracing && tstate->c_tracefunc && __pyx_frame->f_trace)) {\
1651 int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\
1652 if (unlikely(ret)) goto_error;\
1653 }\
1654 }
1655 #endif
1656 #else
1657 #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error;
1658 #endif
1659
1660 /* WriteUnraisableException.proto */
1661 static void __Pyx_WriteUnraisable(const char *name, int clineno,
1662 int lineno, const char *filename,
1663 int full_traceback, int nogil);
1664
1665 /* PyDictVersioning.proto */
1666 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
1667 #define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1)
1668 #define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag)
1669 #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\
1670 (version_var) = __PYX_GET_DICT_VERSION(dict);\
1671 (cache_var) = (value);
1672 #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\
1673 static PY_UINT64_T __pyx_dict_version = 0;\
1674 static PyObject *__pyx_dict_cached_value = NULL;\
1675 if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\
1676 (VAR) = __pyx_dict_cached_value;\
1677 } else {\
1678 (VAR) = __pyx_dict_cached_value = (LOOKUP);\
1679 __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\
1680 }\
1681 }
1682 static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj);
1683 static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj);
1684 static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version);
1685 #else
1686 #define __PYX_GET_DICT_VERSION(dict) (0)
1687 #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)
1688 #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP);
1689 #endif
1690
1691 /* GetModuleGlobalName.proto */
1692 #if CYTHON_USE_DICT_VERSIONS
1693 #define __Pyx_GetModuleGlobalName(var, name) {\
1694 static PY_UINT64_T __pyx_dict_version = 0;\
1695 static PyObject *__pyx_dict_cached_value = NULL;\
1696 (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\
1697 (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\
1698 __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
1699 }
1700 #define __Pyx_GetModuleGlobalNameUncached(var, name) {\
1701 PY_UINT64_T __pyx_dict_version;\
1702 PyObject *__pyx_dict_cached_value;\
1703 (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
1704 }
1705 static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value);
1706 #else
1707 #define __Pyx_GetModuleGlobalName(var, name) (var) = __Pyx__GetModuleGlobalName(name)
1708 #define __Pyx_GetModuleGlobalNameUncached(var, name) (var) = __Pyx__GetModuleGlobalName(name)
1709 static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name);
1710 #endif
1711
1712 /* GetItemInt.proto */
1713 #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1714 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1715 __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\
1716 (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\
1717 __Pyx_GetItemInt_Generic(o, to_py_func(i))))
1718 #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1719 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1720 __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1721 (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
1722 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
1723 int wraparound, int boundscheck);
1724 #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1725 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1726 __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1727 (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
1728 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
1729 int wraparound, int boundscheck);
1730 static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
1731 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
1732 int is_list, int wraparound, int boundscheck);
1733
1734 /* ObjectGetItem.proto */
1735 #if CYTHON_USE_TYPE_SLOTS
1736 static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key);
1737 #else
1738 #define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key)
1739 #endif
1740
1741 /* GetTopmostException.proto */
1742 #if CYTHON_USE_EXC_INFO_STACK
1743 static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate);
1744 #endif
1745
1746 /* SaveResetException.proto */
1747 #if CYTHON_FAST_THREAD_STATE
1748 #define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
1749 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1750 #define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
1751 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1752 #else
1753 #define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb)
1754 #define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb)
1755 #endif
1756
1757 /* PyErrExceptionMatches.proto */
1758 #if CYTHON_FAST_THREAD_STATE
1759 #define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
1760 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
1761 #else
1762 #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err)
1763 #endif
1764
1765 /* GetException.proto */
1766 #if CYTHON_FAST_THREAD_STATE
1767 #define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb)
1768 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1769 #else
1770 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
1771 #endif
1772
1773 /* PyFunctionFastCall.proto */
1774 #if CYTHON_FAST_PYCALL
1775 #define __Pyx_PyFunction_FastCall(func, args, nargs)\
1776 __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL)
1777 #if 1 || PY_VERSION_HEX < 0x030600B1
1778 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs);
1779 #else
1780 #define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs)
1781 #endif
1782 #define __Pyx_BUILD_ASSERT_EXPR(cond)\
1783 (sizeof(char [1 - 2*!(cond)]) - 1)
1784 #ifndef Py_MEMBER_SIZE
1785 #define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member)
1786 #endif
1787 static size_t __pyx_pyframe_localsplus_offset = 0;
1788 #include "frameobject.h"
1789 #define __Pxy_PyFrame_Initialize_Offsets()\
1790 ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\
1791 (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus)))
1792 #define __Pyx_PyFrame_GetLocalsplus(frame)\
1793 (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset))
1794 #endif
1795
1796 /* PyCFunctionFastCall.proto */
1797 #if CYTHON_FAST_PYCCALL
1798 static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs);
1799 #else
1800 #define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL)
1801 #endif
1802
1803 /* PyObjectCall.proto */
1804 #if CYTHON_COMPILING_IN_CPYTHON
1805 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
1806 #else
1807 #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
1808 #endif
1809
1810 /* PySequenceContains.proto */
__Pyx_PySequence_ContainsTF(PyObject * item,PyObject * seq,int eq)1811 static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) {
1812 int result = PySequence_Contains(seq, item);
1813 return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
1814 }
1815
1816 /* PyObjectSetAttrStr.proto */
1817 #if CYTHON_USE_TYPE_SLOTS
1818 #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o, n, NULL)
1819 static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value);
1820 #else
1821 #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n)
1822 #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v)
1823 #endif
1824
1825 /* RaiseArgTupleInvalid.proto */
1826 static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
1827 Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);
1828
1829 /* RaiseDoubleKeywords.proto */
1830 static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);
1831
1832 /* ParseKeywords.proto */
1833 static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\
1834 PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\
1835 const char* function_name);
1836
1837 /* ArgTypeTest.proto */
1838 #define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\
1839 ((likely((Py_TYPE(obj) == type) | (none_allowed && (obj == Py_None)))) ? 1 :\
1840 __Pyx__ArgTypeTest(obj, type, name, exact))
1841 static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact);
1842
1843 /* SetItemInt.proto */
1844 #define __Pyx_SetItemInt(o, i, v, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1845 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1846 __Pyx_SetItemInt_Fast(o, (Py_ssize_t)i, v, is_list, wraparound, boundscheck) :\
1847 (is_list ? (PyErr_SetString(PyExc_IndexError, "list assignment index out of range"), -1) :\
1848 __Pyx_SetItemInt_Generic(o, to_py_func(i), v)))
1849 static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v);
1850 static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v,
1851 int is_list, int wraparound, int boundscheck);
1852
1853 /* PyIntBinop.proto */
1854 #if !CYTHON_COMPILING_IN_PYPY
1855 static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
1856 #else
1857 #define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace, zerodivision_check)\
1858 (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2))
1859 #endif
1860
1861 /* IterFinish.proto */
1862 static CYTHON_INLINE int __Pyx_IterFinish(void);
1863
1864 /* PyObjectCallMethO.proto */
1865 #if CYTHON_COMPILING_IN_CPYTHON
1866 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
1867 #endif
1868
1869 /* PyObjectCallNoArg.proto */
1870 #if CYTHON_COMPILING_IN_CPYTHON
1871 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func);
1872 #else
1873 #define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL)
1874 #endif
1875
1876 /* PyObjectCallOneArg.proto */
1877 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);
1878
1879 /* PyObjectGetMethod.proto */
1880 static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method);
1881
1882 /* PyObjectCallMethod0.proto */
1883 static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name);
1884
1885 /* RaiseNeedMoreValuesToUnpack.proto */
1886 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
1887
1888 /* RaiseTooManyValuesToUnpack.proto */
1889 static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
1890
1891 /* UnpackItemEndCheck.proto */
1892 static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected);
1893
1894 /* RaiseNoneIterError.proto */
1895 static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);
1896
1897 /* UnpackTupleError.proto */
1898 static void __Pyx_UnpackTupleError(PyObject *, Py_ssize_t index);
1899
1900 /* UnpackTuple2.proto */
1901 #define __Pyx_unpack_tuple2(tuple, value1, value2, is_tuple, has_known_size, decref_tuple)\
1902 (likely(is_tuple || PyTuple_Check(tuple)) ?\
1903 (likely(has_known_size || PyTuple_GET_SIZE(tuple) == 2) ?\
1904 __Pyx_unpack_tuple2_exact(tuple, value1, value2, decref_tuple) :\
1905 (__Pyx_UnpackTupleError(tuple, 2), -1)) :\
1906 __Pyx_unpack_tuple2_generic(tuple, value1, value2, has_known_size, decref_tuple))
1907 static CYTHON_INLINE int __Pyx_unpack_tuple2_exact(
1908 PyObject* tuple, PyObject** value1, PyObject** value2, int decref_tuple);
1909 static int __Pyx_unpack_tuple2_generic(
1910 PyObject* tuple, PyObject** value1, PyObject** value2, int has_known_size, int decref_tuple);
1911
1912 /* dict_iter.proto */
1913 static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, PyObject* method_name,
1914 Py_ssize_t* p_orig_length, int* p_is_dict);
1915 static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos,
1916 PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict);
1917
1918 /* IncludeStringH.proto */
1919 #include <string.h>
1920
1921 /* BytesEquals.proto */
1922 static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals);
1923
1924 /* UnicodeEquals.proto */
1925 static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals);
1926
1927 /* RaiseException.proto */
1928 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);
1929
1930 /* set_iter.proto */
1931 static CYTHON_INLINE PyObject* __Pyx_set_iterator(PyObject* iterable, int is_set,
1932 Py_ssize_t* p_orig_length, int* p_source_is_set);
1933 static CYTHON_INLINE int __Pyx_set_iter_next(
1934 PyObject* iter_obj, Py_ssize_t orig_length,
1935 Py_ssize_t* ppos, PyObject **value,
1936 int source_is_set);
1937
1938 /* DictGetItem.proto */
1939 #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
1940 static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key);
1941 #define __Pyx_PyObject_Dict_GetItem(obj, name)\
1942 (likely(PyDict_CheckExact(obj)) ?\
1943 __Pyx_PyDict_GetItem(obj, name) : PyObject_GetItem(obj, name))
1944 #else
1945 #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key)
1946 #define __Pyx_PyObject_Dict_GetItem(obj, name) PyObject_GetItem(obj, name)
1947 #endif
1948
1949 /* ExtTypeTest.proto */
1950 static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);
1951
1952 /* IsLittleEndian.proto */
1953 static CYTHON_INLINE int __Pyx_Is_Little_Endian(void);
1954
1955 /* BufferFormatCheck.proto */
1956 static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts);
1957 static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
1958 __Pyx_BufFmt_StackElem* stack,
1959 __Pyx_TypeInfo* type);
1960
1961 /* BufferGetAndValidate.proto */
1962 #define __Pyx_GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack)\
1963 ((obj == Py_None || obj == NULL) ?\
1964 (__Pyx_ZeroBuffer(buf), 0) :\
1965 __Pyx__GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack))
1966 static int __Pyx__GetBufferAndValidate(Py_buffer* buf, PyObject* obj,
1967 __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack);
1968 static void __Pyx_ZeroBuffer(Py_buffer* buf);
1969 static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info);
1970 static Py_ssize_t __Pyx_minusones[] = { -1, -1, -1, -1, -1, -1, -1, -1 };
1971 static Py_ssize_t __Pyx_zeros[] = { 0, 0, 0, 0, 0, 0, 0, 0 };
1972
1973 /* BufferFallbackError.proto */
1974 static void __Pyx_RaiseBufferFallbackError(void);
1975
1976 /* decode_c_string_utf16.proto */
__Pyx_PyUnicode_DecodeUTF16(const char * s,Py_ssize_t size,const char * errors)1977 static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16(const char *s, Py_ssize_t size, const char *errors) {
1978 int byteorder = 0;
1979 return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
1980 }
__Pyx_PyUnicode_DecodeUTF16LE(const char * s,Py_ssize_t size,const char * errors)1981 static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16LE(const char *s, Py_ssize_t size, const char *errors) {
1982 int byteorder = -1;
1983 return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
1984 }
__Pyx_PyUnicode_DecodeUTF16BE(const char * s,Py_ssize_t size,const char * errors)1985 static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16BE(const char *s, Py_ssize_t size, const char *errors) {
1986 int byteorder = 1;
1987 return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
1988 }
1989
1990 /* decode_c_bytes.proto */
1991 static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes(
1992 const char* cstring, Py_ssize_t length, Py_ssize_t start, Py_ssize_t stop,
1993 const char* encoding, const char* errors,
1994 PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors));
1995
1996 /* decode_bytes.proto */
__Pyx_decode_bytes(PyObject * string,Py_ssize_t start,Py_ssize_t stop,const char * encoding,const char * errors,PyObject * (* decode_func)(const char * s,Py_ssize_t size,const char * errors))1997 static CYTHON_INLINE PyObject* __Pyx_decode_bytes(
1998 PyObject* string, Py_ssize_t start, Py_ssize_t stop,
1999 const char* encoding, const char* errors,
2000 PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) {
2001 return __Pyx_decode_c_bytes(
2002 PyBytes_AS_STRING(string), PyBytes_GET_SIZE(string),
2003 start, stop, encoding, errors, decode_func);
2004 }
2005
2006 /* PyObjectFormat.proto */
2007 #if CYTHON_USE_UNICODE_WRITER
2008 static PyObject* __Pyx_PyObject_Format(PyObject* s, PyObject* f);
2009 #else
2010 #define __Pyx_PyObject_Format(s, f) PyObject_Format(s, f)
2011 #endif
2012
2013 /* BufferIndexError.proto */
2014 static void __Pyx_RaiseBufferIndexError(int axis);
2015
2016 #define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0)
2017 /* JoinPyUnicode.proto */
2018 static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength,
2019 Py_UCS4 max_char);
2020
2021 /* PyObjectCall2Args.proto */
2022 static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2);
2023
2024 /* UnpackUnboundCMethod.proto */
2025 typedef struct {
2026 PyObject *type;
2027 PyObject **method_name;
2028 PyCFunction func;
2029 PyObject *method;
2030 int flag;
2031 } __Pyx_CachedCFunction;
2032
2033 /* CallUnboundCMethod1.proto */
2034 static PyObject* __Pyx__CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg);
2035 #if CYTHON_COMPILING_IN_CPYTHON
2036 static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg);
2037 #else
2038 #define __Pyx_CallUnboundCMethod1(cfunc, self, arg) __Pyx__CallUnboundCMethod1(cfunc, self, arg)
2039 #endif
2040
2041 /* PyDictContains.proto */
__Pyx_PyDict_ContainsTF(PyObject * item,PyObject * dict,int eq)2042 static CYTHON_INLINE int __Pyx_PyDict_ContainsTF(PyObject* item, PyObject* dict, int eq) {
2043 int result = PyDict_Contains(dict, item);
2044 return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
2045 }
2046
2047 /* py_dict_keys.proto */
2048 static CYTHON_INLINE PyObject* __Pyx_PyDict_Keys(PyObject* d);
2049
2050 /* CallUnboundCMethod0.proto */
2051 static PyObject* __Pyx__CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self);
2052 #if CYTHON_COMPILING_IN_CPYTHON
2053 #define __Pyx_CallUnboundCMethod0(cfunc, self)\
2054 (likely((cfunc)->func) ?\
2055 (likely((cfunc)->flag == METH_NOARGS) ? (*((cfunc)->func))(self, NULL) :\
2056 (PY_VERSION_HEX >= 0x030600B1 && likely((cfunc)->flag == METH_FASTCALL) ?\
2057 (PY_VERSION_HEX >= 0x030700A0 ?\
2058 (*(__Pyx_PyCFunctionFast)(void*)(PyCFunction)(cfunc)->func)(self, &__pyx_empty_tuple, 0) :\
2059 (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)(cfunc)->func)(self, &__pyx_empty_tuple, 0, NULL)) :\
2060 (PY_VERSION_HEX >= 0x030700A0 && (cfunc)->flag == (METH_FASTCALL | METH_KEYWORDS) ?\
2061 (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)(cfunc)->func)(self, &__pyx_empty_tuple, 0, NULL) :\
2062 (likely((cfunc)->flag == (METH_VARARGS | METH_KEYWORDS)) ? ((*(PyCFunctionWithKeywords)(void*)(PyCFunction)(cfunc)->func)(self, __pyx_empty_tuple, NULL)) :\
2063 ((cfunc)->flag == METH_VARARGS ? (*((cfunc)->func))(self, __pyx_empty_tuple) :\
2064 __Pyx__CallUnboundCMethod0(cfunc, self)))))) :\
2065 __Pyx__CallUnboundCMethod0(cfunc, self))
2066 #else
2067 #define __Pyx_CallUnboundCMethod0(cfunc, self) __Pyx__CallUnboundCMethod0(cfunc, self)
2068 #endif
2069
2070 /* py_dict_values.proto */
2071 static CYTHON_INLINE PyObject* __Pyx_PyDict_Values(PyObject* d);
2072
2073 /* PyObjectFormatAndDecref.proto */
2074 static CYTHON_INLINE PyObject* __Pyx_PyObject_FormatSimpleAndDecref(PyObject* s, PyObject* f);
2075 static CYTHON_INLINE PyObject* __Pyx_PyObject_FormatAndDecref(PyObject* s, PyObject* f);
2076
2077 /* PyUnicode_Unicode.proto */
2078 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Unicode(PyObject *obj);
2079
2080 /* PyIntCompare.proto */
2081 static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, long inplace);
2082
2083 /* ListAppend.proto */
2084 #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
__Pyx_PyList_Append(PyObject * list,PyObject * x)2085 static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
2086 PyListObject* L = (PyListObject*) list;
2087 Py_ssize_t len = Py_SIZE(list);
2088 if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) {
2089 Py_INCREF(x);
2090 PyList_SET_ITEM(list, len, x);
2091 Py_SIZE(list) = len+1;
2092 return 0;
2093 }
2094 return PyList_Append(list, x);
2095 }
2096 #else
2097 #define __Pyx_PyList_Append(L,x) PyList_Append(L,x)
2098 #endif
2099
2100 /* None.proto */
2101 static CYTHON_INLINE long __Pyx_div_long(long, long);
2102
2103 /* PyIntFromDouble.proto */
2104 #if PY_MAJOR_VERSION < 3
2105 static CYTHON_INLINE PyObject* __Pyx_PyInt_FromDouble(double value);
2106 #else
2107 #define __Pyx_PyInt_FromDouble(value) PyLong_FromDouble(value)
2108 #endif
2109
2110 /* None.proto */
2111 static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname);
2112
2113 /* PyIntBinop.proto */
2114 #if !CYTHON_COMPILING_IN_PYPY
2115 static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
2116 #else
2117 #define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace, zerodivision_check)\
2118 (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2))
2119 #endif
2120
2121 /* StringJoin.proto */
2122 #if PY_MAJOR_VERSION < 3
2123 #define __Pyx_PyString_Join __Pyx_PyBytes_Join
2124 #define __Pyx_PyBaseString_Join(s, v) (PyUnicode_CheckExact(s) ? PyUnicode_Join(s, v) : __Pyx_PyBytes_Join(s, v))
2125 #else
2126 #define __Pyx_PyString_Join PyUnicode_Join
2127 #define __Pyx_PyBaseString_Join PyUnicode_Join
2128 #endif
2129 #if CYTHON_COMPILING_IN_CPYTHON
2130 #if PY_MAJOR_VERSION < 3
2131 #define __Pyx_PyBytes_Join _PyString_Join
2132 #else
2133 #define __Pyx_PyBytes_Join _PyBytes_Join
2134 #endif
2135 #else
2136 static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values);
2137 #endif
2138
2139 /* ListCompAppend.proto */
2140 #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
__Pyx_ListComp_Append(PyObject * list,PyObject * x)2141 static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) {
2142 PyListObject* L = (PyListObject*) list;
2143 Py_ssize_t len = Py_SIZE(list);
2144 if (likely(L->allocated > len)) {
2145 Py_INCREF(x);
2146 PyList_SET_ITEM(list, len, x);
2147 Py_SIZE(list) = len+1;
2148 return 0;
2149 }
2150 return PyList_Append(list, x);
2151 }
2152 #else
2153 #define __Pyx_ListComp_Append(L,x) PyList_Append(L,x)
2154 #endif
2155
2156 /* GetAttr.proto */
2157 static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *);
2158
2159 /* GetAttr3.proto */
2160 static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *);
2161
2162 /* FetchCommonType.proto */
2163 static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type);
2164
2165 /* CythonFunction.proto */
2166 #define __Pyx_CyFunction_USED 1
2167 #define __Pyx_CYFUNCTION_STATICMETHOD 0x01
2168 #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02
2169 #define __Pyx_CYFUNCTION_CCLASS 0x04
2170 #define __Pyx_CyFunction_GetClosure(f)\
2171 (((__pyx_CyFunctionObject *) (f))->func_closure)
2172 #define __Pyx_CyFunction_GetClassObj(f)\
2173 (((__pyx_CyFunctionObject *) (f))->func_classobj)
2174 #define __Pyx_CyFunction_Defaults(type, f)\
2175 ((type *)(((__pyx_CyFunctionObject *) (f))->defaults))
2176 #define __Pyx_CyFunction_SetDefaultsGetter(f, g)\
2177 ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g)
2178 typedef struct {
2179 PyCFunctionObject func;
2180 #if PY_VERSION_HEX < 0x030500A0
2181 PyObject *func_weakreflist;
2182 #endif
2183 PyObject *func_dict;
2184 PyObject *func_name;
2185 PyObject *func_qualname;
2186 PyObject *func_doc;
2187 PyObject *func_globals;
2188 PyObject *func_code;
2189 PyObject *func_closure;
2190 PyObject *func_classobj;
2191 void *defaults;
2192 int defaults_pyobjects;
2193 int flags;
2194 PyObject *defaults_tuple;
2195 PyObject *defaults_kwdict;
2196 PyObject *(*defaults_getter)(PyObject *);
2197 PyObject *func_annotations;
2198 } __pyx_CyFunctionObject;
2199 static PyTypeObject *__pyx_CyFunctionType = 0;
2200 #define __Pyx_CyFunction_Check(obj) (__Pyx_TypeCheck(obj, __pyx_CyFunctionType))
2201 #define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code)\
2202 __Pyx_CyFunction_New(__pyx_CyFunctionType, ml, flags, qualname, self, module, globals, code)
2203 static PyObject *__Pyx_CyFunction_New(PyTypeObject *, PyMethodDef *ml,
2204 int flags, PyObject* qualname,
2205 PyObject *self,
2206 PyObject *module, PyObject *globals,
2207 PyObject* code);
2208 static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m,
2209 size_t size,
2210 int pyobjects);
2211 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m,
2212 PyObject *tuple);
2213 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m,
2214 PyObject *dict);
2215 static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m,
2216 PyObject *dict);
2217 static int __pyx_CyFunction_init(void);
2218
2219 /* py_abs.proto */
2220 #if CYTHON_USE_PYLONG_INTERNALS
2221 static PyObject *__Pyx_PyLong_AbsNeg(PyObject *num);
2222 #define __Pyx_PyNumber_Absolute(x)\
2223 ((likely(PyLong_CheckExact(x))) ?\
2224 (likely(Py_SIZE(x) >= 0) ? (Py_INCREF(x), (x)) : __Pyx_PyLong_AbsNeg(x)) :\
2225 PyNumber_Absolute(x))
2226 #else
2227 #define __Pyx_PyNumber_Absolute(x) PyNumber_Absolute(x)
2228 #endif
2229
2230 /* Import.proto */
2231 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);
2232
2233 /* ImportFrom.proto */
2234 static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name);
2235
2236 /* HasAttr.proto */
2237 static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *);
2238
2239 /* PyObject_GenericGetAttrNoDict.proto */
2240 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
2241 static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name);
2242 #else
2243 #define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr
2244 #endif
2245
2246 /* PyObject_GenericGetAttr.proto */
2247 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
2248 static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name);
2249 #else
2250 #define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr
2251 #endif
2252
2253 /* SetVTable.proto */
2254 static int __Pyx_SetVtable(PyObject *dict, void *vtable);
2255
2256 /* SetupReduce.proto */
2257 static int __Pyx_setup_reduce(PyObject* type_obj);
2258
2259 /* TypeImport.proto */
2260 #ifndef __PYX_HAVE_RT_ImportType_proto
2261 #define __PYX_HAVE_RT_ImportType_proto
2262 enum __Pyx_ImportType_CheckSize {
2263 __Pyx_ImportType_CheckSize_Error = 0,
2264 __Pyx_ImportType_CheckSize_Warn = 1,
2265 __Pyx_ImportType_CheckSize_Ignore = 2
2266 };
2267 static PyTypeObject *__Pyx_ImportType(PyObject* module, const char *module_name, const char *class_name, size_t size, enum __Pyx_ImportType_CheckSize check_size);
2268 #endif
2269
2270 /* SetNameInClass.proto */
2271 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
2272 #define __Pyx_SetNameInClass(ns, name, value)\
2273 (likely(PyDict_CheckExact(ns)) ? _PyDict_SetItem_KnownHash(ns, name, value, ((PyASCIIObject *) name)->hash) : PyObject_SetItem(ns, name, value))
2274 #elif CYTHON_COMPILING_IN_CPYTHON
2275 #define __Pyx_SetNameInClass(ns, name, value)\
2276 (likely(PyDict_CheckExact(ns)) ? PyDict_SetItem(ns, name, value) : PyObject_SetItem(ns, name, value))
2277 #else
2278 #define __Pyx_SetNameInClass(ns, name, value) PyObject_SetItem(ns, name, value)
2279 #endif
2280
2281 /* CalculateMetaclass.proto */
2282 static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases);
2283
2284 /* Py3ClassCreate.proto */
2285 static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, PyObject *qualname,
2286 PyObject *mkw, PyObject *modname, PyObject *doc);
2287 static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases, PyObject *dict,
2288 PyObject *mkw, int calculate_metaclass, int allow_py2_metaclass);
2289
2290 /* CLineInTraceback.proto */
2291 #ifdef CYTHON_CLINE_IN_TRACEBACK
2292 #define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0)
2293 #else
2294 static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line);
2295 #endif
2296
2297 /* CodeObjectCache.proto */
2298 typedef struct {
2299 PyCodeObject* code_object;
2300 int code_line;
2301 } __Pyx_CodeObjectCacheEntry;
2302 struct __Pyx_CodeObjectCache {
2303 int count;
2304 int max_count;
2305 __Pyx_CodeObjectCacheEntry* entries;
2306 };
2307 static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
2308 static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
2309 static PyCodeObject *__pyx_find_code_object(int code_line);
2310 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);
2311
2312 /* AddTraceback.proto */
2313 static void __Pyx_AddTraceback(const char *funcname, int c_line,
2314 int py_line, const char *filename);
2315
2316 /* CIntToPy.proto */
2317 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_char(char value);
2318
2319 /* BufferStructDeclare.proto */
2320 typedef struct {
2321 Py_ssize_t shape, strides, suboffsets;
2322 } __Pyx_Buf_DimInfo;
2323 typedef struct {
2324 size_t refcount;
2325 Py_buffer pybuffer;
2326 } __Pyx_Buffer;
2327 typedef struct {
2328 __Pyx_Buffer *rcbuffer;
2329 char *data;
2330 __Pyx_Buf_DimInfo diminfo[8];
2331 } __Pyx_LocalBuf_ND;
2332
2333 #if PY_MAJOR_VERSION < 3
2334 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags);
2335 static void __Pyx_ReleaseBuffer(Py_buffer *view);
2336 #else
2337 #define __Pyx_GetBuffer PyObject_GetBuffer
2338 #define __Pyx_ReleaseBuffer PyBuffer_Release
2339 #endif
2340
2341
2342 /* CIntToPy.proto */
2343 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_npy_int32(npy_int32 value);
2344
2345 /* CIntToPy.proto */
2346 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_npy_int64(npy_int64 value);
2347
2348 /* CIntToPy.proto */
2349 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
2350
2351 /* CIntToPy.proto */
2352 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_short(short value);
2353
2354 /* RealImag.proto */
2355 #if CYTHON_CCOMPLEX
2356 #ifdef __cplusplus
2357 #define __Pyx_CREAL(z) ((z).real())
2358 #define __Pyx_CIMAG(z) ((z).imag())
2359 #else
2360 #define __Pyx_CREAL(z) (__real__(z))
2361 #define __Pyx_CIMAG(z) (__imag__(z))
2362 #endif
2363 #else
2364 #define __Pyx_CREAL(z) ((z).real)
2365 #define __Pyx_CIMAG(z) ((z).imag)
2366 #endif
2367 #if defined(__cplusplus) && CYTHON_CCOMPLEX\
2368 && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103)
2369 #define __Pyx_SET_CREAL(z,x) ((z).real(x))
2370 #define __Pyx_SET_CIMAG(z,y) ((z).imag(y))
2371 #else
2372 #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x)
2373 #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y)
2374 #endif
2375
2376 /* Arithmetic.proto */
2377 #if CYTHON_CCOMPLEX
2378 #define __Pyx_c_eq_float(a, b) ((a)==(b))
2379 #define __Pyx_c_sum_float(a, b) ((a)+(b))
2380 #define __Pyx_c_diff_float(a, b) ((a)-(b))
2381 #define __Pyx_c_prod_float(a, b) ((a)*(b))
2382 #define __Pyx_c_quot_float(a, b) ((a)/(b))
2383 #define __Pyx_c_neg_float(a) (-(a))
2384 #ifdef __cplusplus
2385 #define __Pyx_c_is_zero_float(z) ((z)==(float)0)
2386 #define __Pyx_c_conj_float(z) (::std::conj(z))
2387 #if 1
2388 #define __Pyx_c_abs_float(z) (::std::abs(z))
2389 #define __Pyx_c_pow_float(a, b) (::std::pow(a, b))
2390 #endif
2391 #else
2392 #define __Pyx_c_is_zero_float(z) ((z)==0)
2393 #define __Pyx_c_conj_float(z) (conjf(z))
2394 #if 1
2395 #define __Pyx_c_abs_float(z) (cabsf(z))
2396 #define __Pyx_c_pow_float(a, b) (cpowf(a, b))
2397 #endif
2398 #endif
2399 #else
2400 static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex);
2401 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex);
2402 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex);
2403 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex);
2404 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex);
2405 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex);
2406 static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex);
2407 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex);
2408 #if 1
2409 static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex);
2410 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex);
2411 #endif
2412 #endif
2413
2414 /* Arithmetic.proto */
2415 #if CYTHON_CCOMPLEX
2416 #define __Pyx_c_eq_double(a, b) ((a)==(b))
2417 #define __Pyx_c_sum_double(a, b) ((a)+(b))
2418 #define __Pyx_c_diff_double(a, b) ((a)-(b))
2419 #define __Pyx_c_prod_double(a, b) ((a)*(b))
2420 #define __Pyx_c_quot_double(a, b) ((a)/(b))
2421 #define __Pyx_c_neg_double(a) (-(a))
2422 #ifdef __cplusplus
2423 #define __Pyx_c_is_zero_double(z) ((z)==(double)0)
2424 #define __Pyx_c_conj_double(z) (::std::conj(z))
2425 #if 1
2426 #define __Pyx_c_abs_double(z) (::std::abs(z))
2427 #define __Pyx_c_pow_double(a, b) (::std::pow(a, b))
2428 #endif
2429 #else
2430 #define __Pyx_c_is_zero_double(z) ((z)==0)
2431 #define __Pyx_c_conj_double(z) (conj(z))
2432 #if 1
2433 #define __Pyx_c_abs_double(z) (cabs(z))
2434 #define __Pyx_c_pow_double(a, b) (cpow(a, b))
2435 #endif
2436 #endif
2437 #else
2438 static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex);
2439 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex);
2440 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex);
2441 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex);
2442 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex);
2443 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex);
2444 static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex);
2445 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex);
2446 #if 1
2447 static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex);
2448 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex);
2449 #endif
2450 #endif
2451
2452 /* CIntToPy.proto */
2453 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
2454
2455 /* CIntToPy.proto */
2456 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value);
2457
2458 /* CIntFromPy.proto */
2459 static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *);
2460
2461 /* CIntFromPy.proto */
2462 static CYTHON_INLINE npy_int32 __Pyx_PyInt_As_npy_int32(PyObject *);
2463
2464 /* CIntFromPy.proto */
2465 static CYTHON_INLINE short __Pyx_PyInt_As_short(PyObject *);
2466
2467 /* CIntFromPy.proto */
2468 static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
2469
2470 /* CIntFromPy.proto */
2471 static CYTHON_INLINE npy_int64 __Pyx_PyInt_As_npy_int64(PyObject *);
2472
2473 /* CIntFromPy.proto */
2474 static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
2475
2476 /* FastTypeChecks.proto */
2477 #if CYTHON_COMPILING_IN_CPYTHON
2478 #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type)
2479 static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b);
2480 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type);
2481 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2);
2482 #else
2483 #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
2484 #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type)
2485 #define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2))
2486 #endif
2487 #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception)
2488
2489 /* CheckBinaryVersion.proto */
2490 static int __Pyx_check_binary_version(void);
2491
2492 /* InitStrings.proto */
2493 static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
2494
2495 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_set_pseudocount(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, __pyx_t_5numpy_float64_t __pyx_v_pseudocount, int __pyx_skip_dispatch); /* proto*/
2496 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_enable_trackline(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
2497 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_add_chromosome(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_5numpy_int32_t __pyx_v_chrom_max_len, int __pyx_skip_dispatch); /* proto*/
2498 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_add(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_chromosome, __pyx_t_5numpy_int32_t __pyx_v_endpos, __pyx_t_5numpy_float64_t __pyx_v_chip, __pyx_t_5numpy_float64_t __pyx_v_control, int __pyx_skip_dispatch); /* proto*/
2499 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_finalize(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
2500 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_get_data_by_chr(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_chromosome, int __pyx_skip_dispatch); /* proto*/
2501 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_get_chr_names(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
2502 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_change_normalization_method(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, char __pyx_v_normalization_method, int __pyx_skip_dispatch); /* proto*/
2503 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_normalize(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, __pyx_t_5numpy_float64_t __pyx_v_treat_scale, __pyx_t_5numpy_float64_t __pyx_v_control_scale); /* proto*/
2504 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_change_score_method(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, char __pyx_v_scoring_method, int __pyx_skip_dispatch); /* proto*/
2505 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_pvalue(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2506 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_qvalue(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2507 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_make_pq_table(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
2508 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_likelihood(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2509 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_sym_likelihood(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2510 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_logFE(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2511 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_foldenrichment(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2512 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_subtraction(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2513 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_SPMR(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2514 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_max(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2515 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_write_bedGraph(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_fhd, PyObject *__pyx_v_name, PyObject *__pyx_v_description, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_write_bedGraph *__pyx_optional_args); /* proto*/
2516 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_peaks(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_peaks *__pyx_optional_args); /* proto*/
2517 static PyBoolObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_peak_content, PyObject *__pyx_v_peaks, __pyx_t_5numpy_int32_t __pyx_v_min_length, PyObject *__pyx_v_chrom, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak *__pyx_optional_args); /* proto*/
2518 static PyBoolObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak2(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_peak_content, PyObject *__pyx_v_peaks, __pyx_t_5numpy_int32_t __pyx_v_min_length, PyObject *__pyx_v_chrom, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak2 *__pyx_optional_args); /* proto*/
2519 static __pyx_t_5numpy_int64_t __pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_total(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto*/
2520 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_broadpeaks(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_broadpeaks *__pyx_optional_args); /* proto*/
2521 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_set_pseudocount(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, __pyx_t_5numpy_float64_t __pyx_v_pseudocount, int __pyx_skip_dispatch); /* proto*/
2522 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_build(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
2523 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_build_chromosome(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_chrname, PyObject *__pyx_v_cond1_treat_ps, PyObject *__pyx_v_cond1_control_ps, PyObject *__pyx_v_cond2_treat_ps, PyObject *__pyx_v_cond2_control_ps, PyObject *__pyx_v_cond1_treat_vs, PyObject *__pyx_v_cond1_control_vs, PyObject *__pyx_v_cond2_treat_vs, PyObject *__pyx_v_cond2_control_vs); /* proto*/
2524 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_add_chromosome(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_5numpy_int32_t __pyx_v_chrom_max_len); /* proto*/
2525 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_add(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_chromosome, __pyx_t_5numpy_int32_t __pyx_v_endpos, __pyx_t_5numpy_float64_t __pyx_v_t1, __pyx_t_5numpy_float64_t __pyx_v_c1, __pyx_t_5numpy_float64_t __pyx_v_t2, __pyx_t_5numpy_float64_t __pyx_v_c2); /* proto*/
2526 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_finalize(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
2527 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_get_data_by_chr(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_chromosome, int __pyx_skip_dispatch); /* proto*/
2528 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_get_chr_names(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, int __pyx_skip_dispatch); /* proto*/
2529 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_write_bedGraph(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_fhd, CYTHON_UNUSED PyObject *__pyx_v_name, CYTHON_UNUSED PyObject *__pyx_v_description, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_write_bedGraph *__pyx_optional_args); /* proto*/
2530 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_write_matrix(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_fhd, CYTHON_UNUSED PyObject *__pyx_v_name, CYTHON_UNUSED PyObject *__pyx_v_description, int __pyx_skip_dispatch); /* proto*/
2531 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_call_peaks(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_call_peaks *__pyx_optional_args); /* proto*/
2532 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores___add_a_peak(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_peaks, PyObject *__pyx_v_chrom, PyArrayObject *__pyx_v_indices, PyArrayObject *__pyx_v_startpos, PyArrayObject *__pyx_v_endpos, PyArrayObject *__pyx_v_score, __pyx_t_5numpy_int32_t __pyx_v_max_gap, __pyx_t_5numpy_int32_t __pyx_v_min_length); /* proto*/
2533 static __pyx_t_5numpy_float64_t __pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_mean_from_peakcontent(CYTHON_UNUSED struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_peakcontent); /* proto*/
2534 static __pyx_t_5numpy_int64_t __pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_total(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self); /* proto*/
2535
2536 /* Module declarations from 'cpython.buffer' */
2537
2538 /* Module declarations from 'libc.string' */
2539
2540 /* Module declarations from 'libc.stdio' */
2541
2542 /* Module declarations from '__builtin__' */
2543
2544 /* Module declarations from 'cpython.type' */
2545 static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0;
2546
2547 /* Module declarations from 'cpython.version' */
2548
2549 /* Module declarations from 'cpython.exc' */
2550
2551 /* Module declarations from 'cpython.module' */
2552
2553 /* Module declarations from 'cpython.mem' */
2554
2555 /* Module declarations from 'cpython.tuple' */
2556
2557 /* Module declarations from 'cpython.list' */
2558
2559 /* Module declarations from 'cpython.sequence' */
2560
2561 /* Module declarations from 'cpython.mapping' */
2562
2563 /* Module declarations from 'cpython.iterator' */
2564
2565 /* Module declarations from 'cpython.number' */
2566
2567 /* Module declarations from 'cpython.int' */
2568
2569 /* Module declarations from '__builtin__' */
2570
2571 /* Module declarations from 'cpython.bool' */
2572 static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0;
2573
2574 /* Module declarations from 'cpython.long' */
2575
2576 /* Module declarations from 'cpython.float' */
2577
2578 /* Module declarations from '__builtin__' */
2579
2580 /* Module declarations from 'cpython.complex' */
2581 static PyTypeObject *__pyx_ptype_7cpython_7complex_complex = 0;
2582
2583 /* Module declarations from 'cpython.string' */
2584
2585 /* Module declarations from 'cpython.unicode' */
2586
2587 /* Module declarations from 'cpython.dict' */
2588
2589 /* Module declarations from 'cpython.instance' */
2590
2591 /* Module declarations from 'cpython.function' */
2592
2593 /* Module declarations from 'cpython.method' */
2594
2595 /* Module declarations from 'cpython.weakref' */
2596
2597 /* Module declarations from 'cpython.getargs' */
2598
2599 /* Module declarations from 'cpython.pythread' */
2600
2601 /* Module declarations from 'cpython.pystate' */
2602
2603 /* Module declarations from 'cpython.cobject' */
2604
2605 /* Module declarations from 'cpython.oldbuffer' */
2606
2607 /* Module declarations from 'cpython.set' */
2608
2609 /* Module declarations from 'cpython.bytes' */
2610
2611 /* Module declarations from 'cpython.pycapsule' */
2612
2613 /* Module declarations from 'cpython' */
2614
2615 /* Module declarations from 'cpython.object' */
2616
2617 /* Module declarations from 'cpython.ref' */
2618
2619 /* Module declarations from 'numpy' */
2620
2621 /* Module declarations from 'numpy' */
2622 static PyTypeObject *__pyx_ptype_5numpy_dtype = 0;
2623 static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0;
2624 static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0;
2625 static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0;
2626 static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0;
2627 static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/
2628
2629 /* Module declarations from 'cython' */
2630
2631 /* Module declarations from 'libc.math' */
2632
2633 /* Module declarations from 'MACS2.IO.ScoreTrack' */
2634 static PyTypeObject *__pyx_ptype_5MACS2_2IO_10ScoreTrack_scoreTrackII = 0;
2635 static PyTypeObject *__pyx_ptype_5MACS2_2IO_10ScoreTrack_TwoConditionScores = 0;
2636 static __pyx_t_5numpy_float64_t __pyx_f_5MACS2_2IO_10ScoreTrack_get_pscore(__pyx_t_5numpy_int32_t, __pyx_t_5numpy_float64_t); /*proto*/
2637 static __pyx_t_5numpy_float64_t __pyx_f_5MACS2_2IO_10ScoreTrack_logLR_asym(__pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t); /*proto*/
2638 static __pyx_t_5numpy_float64_t __pyx_f_5MACS2_2IO_10ScoreTrack_logLR_sym(__pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t); /*proto*/
2639 static __pyx_t_5numpy_float64_t __pyx_f_5MACS2_2IO_10ScoreTrack_get_logFE(__pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t); /*proto*/
2640 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack___pyx_unpickle_scoreTrackII__set_state(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *); /*proto*/
2641 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack___pyx_unpickle_TwoConditionScores__set_state(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *); /*proto*/
2642 static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_int32_t = { "int32_t", NULL, sizeof(__pyx_t_5numpy_int32_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_5numpy_int32_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_5numpy_int32_t), 0 };
2643 static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_float32_t = { "float32_t", NULL, sizeof(__pyx_t_5numpy_float32_t), { 0 }, 0, 'R', 0, 0 };
2644 #define __Pyx_MODULE_NAME "MACS2.IO.ScoreTrack"
2645 extern int __pyx_module_is_main_MACS2__IO__ScoreTrack;
2646 int __pyx_module_is_main_MACS2__IO__ScoreTrack = 0;
2647
2648 /* Implementation of 'MACS2.IO.ScoreTrack' */
2649 static PyObject *__pyx_builtin_KeyError;
2650 static PyObject *__pyx_builtin_range;
2651 static PyObject *__pyx_builtin_StopIteration;
2652 static PyObject *__pyx_builtin_NotImplemented;
2653 static PyObject *__pyx_builtin_sum;
2654 static PyObject *__pyx_builtin_sorted;
2655 static PyObject *__pyx_builtin_zip;
2656 static PyObject *__pyx_builtin_ValueError;
2657 static PyObject *__pyx_builtin_RuntimeError;
2658 static PyObject *__pyx_builtin_ImportError;
2659 static const char __pyx_k_0[] = "0,";
2660 static const char __pyx_k_1[] = "1,";
2661 static const char __pyx_k_c[] = "c";
2662 static const char __pyx_k_d[] = "d";
2663 static const char __pyx_k_i[] = "i";
2664 static const char __pyx_k_l[] = "l";
2665 static const char __pyx_k_t[] = "t";
2666 static const char __pyx_k_x[] = "x";
2667 static const char __pyx_k_y[] = "y";
2668 static const char __pyx_k_5f[] = ".5f";
2669 static const char __pyx_k_V1[] = "V1";
2670 static const char __pyx_k_V2[] = "V2";
2671 static const char __pyx_k_fc[] = "fc";
2672 static const char __pyx_k_np[] = "np";
2673 static const char __pyx_k_p1[] = "p1";
2674 static const char __pyx_k_p2[] = "p2";
2675 static const char __pyx_k_v2[] = "v2";
2676 static const char __pyx_k_0_d[] = "0,%d";
2677 static const char __pyx_k_1_1[] = "1,1";
2678 static const char __pyx_k_1_2[] = ",1";
2679 static const char __pyx_k__11[] = "\t";
2680 static const char __pyx_k__12[] = "\n";
2681 static const char __pyx_k__16[] = ".";
2682 static const char __pyx_k__19[] = "\"\n";
2683 static const char __pyx_k__20[] = ",";
2684 static const char __pyx_k__21[] = ":";
2685 static const char __pyx_k__22[] = "_";
2686 static const char __pyx_k_add[] = "add";
2687 static const char __pyx_k_all[] = "all";
2688 static const char __pyx_k_d_2[] = "%d";
2689 static const char __pyx_k_doc[] = "__doc__";
2690 static const char __pyx_k_end[] = "end";
2691 static const char __pyx_k_fhd[] = "fhd";
2692 static const char __pyx_k_new[] = "__new__";
2693 static const char __pyx_k_p1n[] = "p1n";
2694 static const char __pyx_k_p2n[] = "p2n";
2695 static const char __pyx_k_p2s[] = "p2s";
2696 static const char __pyx_k_pos[] = "pos";
2697 static const char __pyx_k_pre[] = "pre";
2698 static const char __pyx_k_ret[] = "ret";
2699 static const char __pyx_k_sum[] = "sum";
2700 static const char __pyx_k_v11[] = "v11";
2701 static const char __pyx_k_v21[] = "v21";
2702 static const char __pyx_k_v2n[] = "v2n";
2703 static const char __pyx_k_v2s[] = "v2s";
2704 static const char __pyx_k_zip[] = "zip";
2705 static const char __pyx_k_None[] = "None";
2706 static const char __pyx_k_chip[] = "chip";
2707 static const char __pyx_k_chr1[] = "chr1";
2708 static const char __pyx_k_chr2[] = "chr2";
2709 static const char __pyx_k_chrs[] = "chrs";
2710 static const char __pyx_k_copy[] = "copy";
2711 static const char __pyx_k_data[] = "data";
2712 static const char __pyx_k_dict[] = "__dict__";
2713 static const char __pyx_k_flat[] = "flat";
2714 static const char __pyx_k_init[] = "__init__";
2715 static const char __pyx_k_join[] = "join";
2716 static const char __pyx_k_keys[] = "keys";
2717 static const char __pyx_k_ladd[] = "ladd";
2718 static const char __pyx_k_main[] = "__main__";
2719 static const char __pyx_k_name[] = "name";
2720 static const char __pyx_k_next[] = "__next__";
2721 static const char __pyx_k_radd[] = "radd";
2722 static const char __pyx_k_self[] = "self";
2723 static const char __pyx_k_size[] = "size";
2724 static const char __pyx_k_test[] = "__test__";
2725 static const char __pyx_k_v11n[] = "v11n";
2726 static const char __pyx_k_v21n[] = "v21n";
2727 static const char __pyx_k_BYTE4[] = "BYTE4";
2728 static const char __pyx_k_array[] = "array";
2729 static const char __pyx_k_build[] = "build";
2730 static const char __pyx_k_c1bdg[] = "c1bdg";
2731 static const char __pyx_k_c2bdg[] = "c2bdg";
2732 static const char __pyx_k_chrom[] = "chrom";
2733 static const char __pyx_k_dtype[] = "dtype";
2734 static const char __pyx_k_int32[] = "int32";
2735 static const char __pyx_k_numpy[] = "numpy";
2736 static const char __pyx_k_peaks[] = "peaks";
2737 static const char __pyx_k_pre_p[] = "pre_p";
2738 static const char __pyx_k_range[] = "range";
2739 static const char __pyx_k_right[] = "right";
2740 static const char __pyx_k_s_d_d[] = "%s\\.%d\\.%d";
2741 static const char __pyx_k_score[] = "score";
2742 static const char __pyx_k_split[] = "split";
2743 static const char __pyx_k_start[] = "start";
2744 static const char __pyx_k_t1bdg[] = "t1bdg";
2745 static const char __pyx_k_t2bdg[] = "t2bdg";
2746 static const char __pyx_k_total[] = "total";
2747 static const char __pyx_k_v1add[] = "v1add";
2748 static const char __pyx_k_v2add[] = "v2add";
2749 static const char __pyx_k_value[] = "value";
2750 static const char __pyx_k_where[] = "where";
2751 static const char __pyx_k_write[] = "write";
2752 static const char __pyx_k_zeros[] = "zeros";
2753 static const char __pyx_k_FBYTE4[] = "FBYTE4";
2754 static const char __pyx_k_PeakIO[] = "PeakIO";
2755 static const char __pyx_k_append[] = "append";
2756 static const char __pyx_k_author[] = "__author__";
2757 static const char __pyx_k_bpeaks[] = "bpeaks";
2758 static const char __pyx_k_column[] = "column";
2759 static const char __pyx_k_cutoff[] = "cutoff";
2760 static const char __pyx_k_decode[] = "decode";
2761 static const char __pyx_k_endpos[] = "endpos";
2762 static const char __pyx_k_import[] = "__import__";
2763 static const char __pyx_k_larray[] = "larray";
2764 static const char __pyx_k_length[] = "length";
2765 static const char __pyx_k_maxima[] = "maxima";
2766 static const char __pyx_k_module[] = "__module__";
2767 static const char __pyx_k_name_2[] = "__name__";
2768 static const char __pyx_k_pickle[] = "pickle";
2769 static const char __pyx_k_pileup[] = "pileup";
2770 static const char __pyx_k_pscore[] = "pscore";
2771 static const char __pyx_k_qscore[] = "qscore";
2772 static const char __pyx_k_rarray[] = "rarray";
2773 static const char __pyx_k_reduce[] = "reduce";
2774 static const char __pyx_k_resize[] = "resize";
2775 static const char __pyx_k_sorted[] = "sorted";
2776 static const char __pyx_k_summit[] = "summit";
2777 static const char __pyx_k_update[] = "update";
2778 static const char __pyx_k_values[] = "values";
2779 static const char __pyx_k_LOG10_E[] = "LOG10_E";
2780 static const char __pyx_k_colname[] = "colname";
2781 static const char __pyx_k_control[] = "control";
2782 static const char __pyx_k_float32[] = "float32";
2783 static const char __pyx_k_logging[] = "logging";
2784 static const char __pyx_k_max_gap[] = "max_gap";
2785 static const char __pyx_k_nonzero[] = "nonzero";
2786 static const char __pyx_k_pointer[] = "pointer";
2787 static const char __pyx_k_prepare[] = "__prepare__";
2788 static const char __pyx_k_reverse[] = "reverse";
2789 static const char __pyx_k_v1array[] = "v1array";
2790 static const char __pyx_k_v2array[] = "v2array";
2791 static const char __pyx_k_version[] = "__version__";
2792 static const char __pyx_k_KeyError[] = "KeyError";
2793 static const char __pyx_k_blockNum[] = "blockNum";
2794 static const char __pyx_k_finalize[] = "finalize";
2795 static const char __pyx_k_getstate[] = "__getstate__";
2796 static const char __pyx_k_lvl2peak[] = "lvl2peak";
2797 static const char __pyx_k_pyx_type[] = "__pyx_type";
2798 static const char __pyx_k_qualname[] = "__qualname__";
2799 static const char __pyx_k_reduce_2[] = "__reduce__";
2800 static const char __pyx_k_refcheck[] = "refcheck";
2801 static const char __pyx_k_setstate[] = "__setstate__";
2802 static const char __pyx_k_thickEnd[] = "thickEnd";
2803 static const char __pyx_k_bdgTrack2[] = "bdgTrack2";
2804 static const char __pyx_k_functools[] = "functools";
2805 static const char __pyx_k_metaclass[] = "__metaclass__";
2806 static const char __pyx_k_pyx_state[] = "__pyx_state";
2807 static const char __pyx_k_reduce_ex[] = "__reduce_ex__";
2808 static const char __pyx_k_stderr_on[] = "stderr_on";
2809 static const char __pyx_k_MACS2_Prob[] = "MACS2.Prob";
2810 static const char __pyx_k_ValueError[] = "ValueError";
2811 static const char __pyx_k_blockSizes[] = "blockSizes";
2812 static const char __pyx_k_call_peaks[] = "call_peaks";
2813 static const char __pyx_k_chrom_data[] = "chrom_data";
2814 static const char __pyx_k_chromosome[] = "chromosome";
2815 static const char __pyx_k_common_chr[] = "common_chr";
2816 static const char __pyx_k_ctrl_depth[] = "ctrl_depth";
2817 static const char __pyx_k_cur_region[] = "cur_region";
2818 static const char __pyx_k_min_length[] = "min_length";
2819 static const char __pyx_k_peak_score[] = "peak_score";
2820 static const char __pyx_k_pyx_result[] = "__pyx_result";
2821 static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__";
2822 static const char __pyx_k_thickStart[] = "thickStart";
2823 static const char __pyx_k_BroadPeakIO[] = "BroadPeakIO";
2824 static const char __pyx_k_ImportError[] = "ImportError";
2825 static const char __pyx_k_PickleError[] = "PickleError";
2826 static const char __pyx_k_blockStarts[] = "blockStarts";
2827 static const char __pyx_k_description[] = "description";
2828 static const char __pyx_k_extract_sum[] = "extract_sum";
2829 static const char __pyx_k_fold_change[] = "fold_change";
2830 static const char __pyx_k_logical_and[] = "logical_and";
2831 static const char __pyx_k_lvl1_cutoff[] = "lvl1_cutoff";
2832 static const char __pyx_k_lvl1peakset[] = "lvl1peakset";
2833 static const char __pyx_k_lvl2_cutoff[] = "lvl2_cutoff";
2834 static const char __pyx_k_poisson_cdf[] = "poisson_cdf";
2835 static const char __pyx_k_pscore_dict[] = "pscore_dict";
2836 static const char __pyx_k_pseudocount[] = "pseudocount";
2837 static const char __pyx_k_treat_depth[] = "treat_depth";
2838 static const char __pyx_k_MACS2_Signal[] = "MACS2.Signal";
2839 static const char __pyx_k_RuntimeError[] = "RuntimeError";
2840 static const char __pyx_k_call_summits[] = "call_summits";
2841 static const char __pyx_k_cond1_factor[] = "cond1_factor";
2842 static const char __pyx_k_cond2_factor[] = "cond2_factor";
2843 static const char __pyx_k_intersection[] = "intersection";
2844 static const char __pyx_k_lvl1_max_gap[] = "lvl1_max_gap";
2845 static const char __pyx_k_lvl2_max_gap[] = "lvl2_max_gap";
2846 static const char __pyx_k_pyx_checksum[] = "__pyx_checksum";
2847 static const char __pyx_k_scoreTrackII[] = "scoreTrackII";
2848 static const char __pyx_k_searchsorted[] = "searchsorted";
2849 static const char __pyx_k_stringsource[] = "stringsource";
2850 static const char __pyx_k_write_matrix[] = "write_matrix";
2851 static const char __pyx_k_StopIteration[] = "StopIteration";
2852 static const char __pyx_k_add_broadpeak[] = "__add_broadpeak";
2853 static const char __pyx_k_chrom_max_len[] = "chrom_max_len";
2854 static const char __pyx_k_description_2[] = "\" description=\"";
2855 static const char __pyx_k_extract_value[] = "extract_value";
2856 static const char __pyx_k_get_chr_names[] = "get_chr_names";
2857 static const char __pyx_k_make_pq_table[] = "make_pq_table";
2858 static const char __pyx_k_reduce_cython[] = "__reduce_cython__";
2859 static const char __pyx_k_NotImplemented[] = "NotImplemented";
2860 static const char __pyx_k_add_chromosome[] = "add_chromosome";
2861 static const char __pyx_k_parse_peakname[] = "parse_peakname";
2862 static const char __pyx_k_sym_logLR_dict[] = "sym_logLR_dict";
2863 static const char __pyx_k_write_bedGraph[] = "write_bedGraph";
2864 static const char __pyx_k_MACS2_Constants[] = "MACS2.Constants";
2865 static const char __pyx_k_MACS2_IO_PeakIO[] = "MACS2.IO.PeakIO";
2866 static const char __pyx_k_asym_logLR_dict[] = "asym_logLR_dict";
2867 static const char __pyx_k_call_broadpeaks[] = "call_broadpeaks";
2868 static const char __pyx_k_enforce_valleys[] = "enforce_valleys";
2869 static const char __pyx_k_extract_average[] = "extract_average";
2870 static const char __pyx_k_get_common_chrs[] = "get_common_chrs";
2871 static const char __pyx_k_get_data_by_chr[] = "get_data_by_chr";
2872 static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError";
2873 static const char __pyx_k_s_not_supported[] = "%s not supported!";
2874 static const char __pyx_k_set_pseudocount[] = "set_pseudocount";
2875 static const char __pyx_k_setstate_cython[] = "__setstate_cython__";
2876 static const char __pyx_k_CombinedTwoTrack[] = "CombinedTwoTrack";
2877 static const char __pyx_k_enable_trackline[] = "enable_trackline";
2878 static const char __pyx_k_enforce_peakyness[] = "enforce_peakyness";
2879 static const char __pyx_k_TwoConditionScores[] = "TwoConditionScores";
2880 static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback";
2881 static const char __pyx_k_scoreTrack_classes[] = "scoreTrack classes";
2882 static const char __pyx_k_MACS2_IO_ScoreTrack[] = "MACS2.IO.ScoreTrack";
2883 static const char __pyx_k_change_score_method[] = "change_score_method";
2884 static const char __pyx_k_CombinedTwoTrack_add[] = "CombinedTwoTrack.add";
2885 static const char __pyx_k_scoreTrackI_Revision[] = "scoreTrackI $Revision$";
2886 static const char __pyx_k_CombinedTwoTrack_total[] = "CombinedTwoTrack.total";
2887 static const char __pyx_k_CombinedTwoTrack___init[] = "CombinedTwoTrack.__init__";
2888 static const char __pyx_k_MACS2_IO_ScoreTrack_pyx[] = "MACS2/IO/ScoreTrack.pyx";
2889 static const char __pyx_k_track_type_bedGraph_name[] = "track type=bedGraph name=\"";
2890 static const char __pyx_k_CombinedTwoTrack_finalize[] = "CombinedTwoTrack.finalize";
2891 static const char __pyx_k_pyx_unpickle_scoreTrackII[] = "__pyx_unpickle_scoreTrackII";
2892 static const char __pyx_k_change_normalization_method[] = "change_normalization_method";
2893 static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous";
2894 static const char __pyx_k_CombinedTwoTrack_extract_sum[] = "CombinedTwoTrack.extract_sum";
2895 static const char __pyx_k_For_differential_peak_calling[] = " For differential peak calling.\n \n ";
2896 static const char __pyx_k_get_common_chrs_locals_lambda[] = "get_common_chrs.<locals>.<lambda>";
2897 static const char __pyx_k_CombinedTwoTrack_extract_value[] = "CombinedTwoTrack.extract_value";
2898 static const char __pyx_k_CombinedTwoTrack_get_chr_names[] = "CombinedTwoTrack.get_chr_names";
2899 static const char __pyx_k_Tao_Liu_vladimir_liu_gmail_com[] = "Tao Liu <vladimir.liu@gmail.com>";
2900 static const char __pyx_k_pyx_unpickle_TwoConditionScore[] = "__pyx_unpickle_TwoConditionScores";
2901 static const char __pyx_k_CombinedTwoTrack_add_chromosome[] = "CombinedTwoTrack.add_chromosome";
2902 static const char __pyx_k_CombinedTwoTrack_write_bedGraph[] = "CombinedTwoTrack.write_bedGraph";
2903 static const char __pyx_k_column_should_be_between_1_2_or[] = "column should be between 1, 2 or 3.";
2904 static const char __pyx_k_level_1_cutoff_should_be_larger[] = "level 1 cutoff should be larger than level 2.";
2905 static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import";
2906 static const char __pyx_k_proportion_background_empirical[] = "proportion_background_empirical_distribution";
2907 static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)";
2908 static const char __pyx_k_CombinedTwoTrack_extract_average[] = "CombinedTwoTrack.extract_average";
2909 static const char __pyx_k_CombinedTwoTrack_get_data_by_chr[] = "CombinedTwoTrack.get_data_by_chr";
2910 static const char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd";
2911 static const char __pyx_k_Incompatible_checksums_s_vs_0x77[] = "Incompatible checksums (%s vs 0x77c358c = (ctrl_edm, cutoff, data, data_stderr, datalength, normalization_method, pseudocount, pvalue_stat, scoring_method, stderr_on, trackline, treat_edm))";
2912 static const char __pyx_k_Incompatible_checksums_s_vs_0x84[] = "Incompatible checksums (%s vs 0x846cc7b = (c1bdg, c2bdg, cond1_factor, cond2_factor, cutoff, data, datalength, pseudocount, pvalue_stat1, pvalue_stat2, pvalue_stat3, t1bdg, t2bdg))";
2913 static const char __pyx_k_Module_for_Feature_IO_classes_Th[] = "Module for Feature IO classes.\n\nThis code is free software; you can redistribute it and/or modify it\nunder the terms of the BSD License (see the file LICENSE included with\nthe distribution).\n";
2914 static const char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported";
2915 static const char __pyx_k_level_2_maximum_gap_should_be_la[] = "level 2 maximum gap should be larger than level 1.";
2916 static const char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous";
2917 static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import";
2918 static const char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short.";
2919 static PyObject *__pyx_kp_b_0;
2920 static PyObject *__pyx_kp_b_0_d;
2921 static PyObject *__pyx_kp_b_1;
2922 static PyObject *__pyx_kp_b_1_1;
2923 static PyObject *__pyx_kp_b_1_2;
2924 static PyObject *__pyx_kp_u_5f;
2925 static PyObject *__pyx_n_s_BYTE4;
2926 static PyObject *__pyx_n_s_BroadPeakIO;
2927 static PyObject *__pyx_n_s_CombinedTwoTrack;
2928 static PyObject *__pyx_n_s_CombinedTwoTrack___init;
2929 static PyObject *__pyx_n_s_CombinedTwoTrack_add;
2930 static PyObject *__pyx_n_s_CombinedTwoTrack_add_chromosome;
2931 static PyObject *__pyx_n_s_CombinedTwoTrack_extract_average;
2932 static PyObject *__pyx_n_s_CombinedTwoTrack_extract_sum;
2933 static PyObject *__pyx_n_s_CombinedTwoTrack_extract_value;
2934 static PyObject *__pyx_n_s_CombinedTwoTrack_finalize;
2935 static PyObject *__pyx_n_s_CombinedTwoTrack_get_chr_names;
2936 static PyObject *__pyx_n_s_CombinedTwoTrack_get_data_by_chr;
2937 static PyObject *__pyx_n_s_CombinedTwoTrack_total;
2938 static PyObject *__pyx_n_s_CombinedTwoTrack_write_bedGraph;
2939 static PyObject *__pyx_n_s_FBYTE4;
2940 static PyObject *__pyx_kp_s_For_differential_peak_calling;
2941 static PyObject *__pyx_kp_u_Format_string_allocated_too_shor;
2942 static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2;
2943 static PyObject *__pyx_n_s_ImportError;
2944 static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x77;
2945 static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x84;
2946 static PyObject *__pyx_n_s_KeyError;
2947 static PyObject *__pyx_n_s_LOG10_E;
2948 static PyObject *__pyx_n_s_MACS2_Constants;
2949 static PyObject *__pyx_n_s_MACS2_IO_PeakIO;
2950 static PyObject *__pyx_n_s_MACS2_IO_ScoreTrack;
2951 static PyObject *__pyx_kp_s_MACS2_IO_ScoreTrack_pyx;
2952 static PyObject *__pyx_n_s_MACS2_Prob;
2953 static PyObject *__pyx_n_s_MACS2_Signal;
2954 static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor;
2955 static PyObject *__pyx_kp_u_None;
2956 static PyObject *__pyx_n_s_NotImplemented;
2957 static PyObject *__pyx_n_s_PeakIO;
2958 static PyObject *__pyx_n_s_PickleError;
2959 static PyObject *__pyx_n_s_RuntimeError;
2960 static PyObject *__pyx_n_s_StopIteration;
2961 static PyObject *__pyx_kp_u_Tao_Liu_vladimir_liu_gmail_com;
2962 static PyObject *__pyx_n_s_TwoConditionScores;
2963 static PyObject *__pyx_n_s_V1;
2964 static PyObject *__pyx_n_u_V1;
2965 static PyObject *__pyx_n_s_V2;
2966 static PyObject *__pyx_n_u_V2;
2967 static PyObject *__pyx_n_s_ValueError;
2968 static PyObject *__pyx_kp_u__11;
2969 static PyObject *__pyx_kp_u__12;
2970 static PyObject *__pyx_kp_b__16;
2971 static PyObject *__pyx_kp_u__19;
2972 static PyObject *__pyx_kp_b__20;
2973 static PyObject *__pyx_kp_u__21;
2974 static PyObject *__pyx_n_u__22;
2975 static PyObject *__pyx_n_s_add;
2976 static PyObject *__pyx_n_s_add_broadpeak;
2977 static PyObject *__pyx_n_s_add_chromosome;
2978 static PyObject *__pyx_n_s_all;
2979 static PyObject *__pyx_n_s_append;
2980 static PyObject *__pyx_n_s_array;
2981 static PyObject *__pyx_n_s_asym_logLR_dict;
2982 static PyObject *__pyx_n_s_author;
2983 static PyObject *__pyx_n_s_bdgTrack2;
2984 static PyObject *__pyx_n_s_blockNum;
2985 static PyObject *__pyx_n_s_blockSizes;
2986 static PyObject *__pyx_n_s_blockStarts;
2987 static PyObject *__pyx_n_s_bpeaks;
2988 static PyObject *__pyx_n_s_build;
2989 static PyObject *__pyx_n_s_c;
2990 static PyObject *__pyx_n_s_c1bdg;
2991 static PyObject *__pyx_n_s_c2bdg;
2992 static PyObject *__pyx_n_s_call_broadpeaks;
2993 static PyObject *__pyx_n_s_call_peaks;
2994 static PyObject *__pyx_n_s_call_summits;
2995 static PyObject *__pyx_n_s_change_normalization_method;
2996 static PyObject *__pyx_n_s_change_score_method;
2997 static PyObject *__pyx_n_s_chip;
2998 static PyObject *__pyx_n_s_chr1;
2999 static PyObject *__pyx_n_s_chr2;
3000 static PyObject *__pyx_n_s_chrom;
3001 static PyObject *__pyx_n_s_chrom_data;
3002 static PyObject *__pyx_n_s_chrom_max_len;
3003 static PyObject *__pyx_n_s_chromosome;
3004 static PyObject *__pyx_n_s_chrs;
3005 static PyObject *__pyx_n_s_cline_in_traceback;
3006 static PyObject *__pyx_n_s_colname;
3007 static PyObject *__pyx_n_s_column;
3008 static PyObject *__pyx_kp_u_column_should_be_between_1_2_or;
3009 static PyObject *__pyx_n_s_common_chr;
3010 static PyObject *__pyx_n_s_cond1_factor;
3011 static PyObject *__pyx_n_s_cond2_factor;
3012 static PyObject *__pyx_n_s_control;
3013 static PyObject *__pyx_n_s_copy;
3014 static PyObject *__pyx_n_s_ctrl_depth;
3015 static PyObject *__pyx_n_s_cur_region;
3016 static PyObject *__pyx_n_s_cutoff;
3017 static PyObject *__pyx_n_s_d;
3018 static PyObject *__pyx_n_u_d;
3019 static PyObject *__pyx_kp_b_d_2;
3020 static PyObject *__pyx_n_s_data;
3021 static PyObject *__pyx_n_s_decode;
3022 static PyObject *__pyx_n_s_description;
3023 static PyObject *__pyx_kp_u_description_2;
3024 static PyObject *__pyx_n_s_dict;
3025 static PyObject *__pyx_n_s_doc;
3026 static PyObject *__pyx_n_s_dtype;
3027 static PyObject *__pyx_n_s_enable_trackline;
3028 static PyObject *__pyx_n_s_end;
3029 static PyObject *__pyx_n_u_end;
3030 static PyObject *__pyx_n_s_endpos;
3031 static PyObject *__pyx_n_s_enforce_peakyness;
3032 static PyObject *__pyx_n_s_enforce_valleys;
3033 static PyObject *__pyx_n_s_extract_average;
3034 static PyObject *__pyx_n_s_extract_sum;
3035 static PyObject *__pyx_n_s_extract_value;
3036 static PyObject *__pyx_n_u_fc;
3037 static PyObject *__pyx_n_s_fhd;
3038 static PyObject *__pyx_n_s_finalize;
3039 static PyObject *__pyx_n_s_flat;
3040 static PyObject *__pyx_n_u_float32;
3041 static PyObject *__pyx_n_s_fold_change;
3042 static PyObject *__pyx_n_s_functools;
3043 static PyObject *__pyx_n_s_get_chr_names;
3044 static PyObject *__pyx_n_s_get_common_chrs;
3045 static PyObject *__pyx_n_s_get_common_chrs_locals_lambda;
3046 static PyObject *__pyx_n_s_get_data_by_chr;
3047 static PyObject *__pyx_n_s_getstate;
3048 static PyObject *__pyx_n_s_i;
3049 static PyObject *__pyx_n_s_import;
3050 static PyObject *__pyx_n_s_init;
3051 static PyObject *__pyx_n_u_int32;
3052 static PyObject *__pyx_n_s_intersection;
3053 static PyObject *__pyx_n_s_join;
3054 static PyObject *__pyx_n_s_keys;
3055 static PyObject *__pyx_n_s_l;
3056 static PyObject *__pyx_n_s_ladd;
3057 static PyObject *__pyx_n_s_larray;
3058 static PyObject *__pyx_n_u_length;
3059 static PyObject *__pyx_kp_u_level_1_cutoff_should_be_larger;
3060 static PyObject *__pyx_kp_u_level_2_maximum_gap_should_be_la;
3061 static PyObject *__pyx_n_s_logging;
3062 static PyObject *__pyx_n_s_logical_and;
3063 static PyObject *__pyx_n_s_lvl1_cutoff;
3064 static PyObject *__pyx_n_s_lvl1_max_gap;
3065 static PyObject *__pyx_n_s_lvl1peakset;
3066 static PyObject *__pyx_n_s_lvl2_cutoff;
3067 static PyObject *__pyx_n_s_lvl2_max_gap;
3068 static PyObject *__pyx_n_s_lvl2peak;
3069 static PyObject *__pyx_n_s_main;
3070 static PyObject *__pyx_n_s_make_pq_table;
3071 static PyObject *__pyx_n_s_max_gap;
3072 static PyObject *__pyx_n_s_maxima;
3073 static PyObject *__pyx_n_s_metaclass;
3074 static PyObject *__pyx_n_s_min_length;
3075 static PyObject *__pyx_n_s_module;
3076 static PyObject *__pyx_n_s_name;
3077 static PyObject *__pyx_n_s_name_2;
3078 static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous;
3079 static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou;
3080 static PyObject *__pyx_n_s_new;
3081 static PyObject *__pyx_n_s_next;
3082 static PyObject *__pyx_n_s_nonzero;
3083 static PyObject *__pyx_n_s_np;
3084 static PyObject *__pyx_n_s_numpy;
3085 static PyObject *__pyx_kp_u_numpy_core_multiarray_failed_to;
3086 static PyObject *__pyx_kp_u_numpy_core_umath_failed_to_impor;
3087 static PyObject *__pyx_n_s_p1;
3088 static PyObject *__pyx_n_s_p1n;
3089 static PyObject *__pyx_n_s_p2;
3090 static PyObject *__pyx_n_s_p2n;
3091 static PyObject *__pyx_n_s_p2s;
3092 static PyObject *__pyx_n_s_parse_peakname;
3093 static PyObject *__pyx_n_s_peak_score;
3094 static PyObject *__pyx_n_s_peaks;
3095 static PyObject *__pyx_n_s_pickle;
3096 static PyObject *__pyx_n_s_pileup;
3097 static PyObject *__pyx_n_u_pileup;
3098 static PyObject *__pyx_n_s_pointer;
3099 static PyObject *__pyx_n_s_poisson_cdf;
3100 static PyObject *__pyx_n_s_pos;
3101 static PyObject *__pyx_n_u_pos;
3102 static PyObject *__pyx_n_s_pre;
3103 static PyObject *__pyx_n_s_pre_p;
3104 static PyObject *__pyx_n_s_prepare;
3105 static PyObject *__pyx_n_s_proportion_background_empirical;
3106 static PyObject *__pyx_n_s_pscore;
3107 static PyObject *__pyx_n_u_pscore;
3108 static PyObject *__pyx_n_s_pscore_dict;
3109 static PyObject *__pyx_n_s_pseudocount;
3110 static PyObject *__pyx_n_s_pyx_PickleError;
3111 static PyObject *__pyx_n_s_pyx_checksum;
3112 static PyObject *__pyx_n_s_pyx_result;
3113 static PyObject *__pyx_n_s_pyx_state;
3114 static PyObject *__pyx_n_s_pyx_type;
3115 static PyObject *__pyx_n_s_pyx_unpickle_TwoConditionScore;
3116 static PyObject *__pyx_n_s_pyx_unpickle_scoreTrackII;
3117 static PyObject *__pyx_n_s_pyx_vtable;
3118 static PyObject *__pyx_n_s_qscore;
3119 static PyObject *__pyx_n_u_qscore;
3120 static PyObject *__pyx_n_s_qualname;
3121 static PyObject *__pyx_n_s_radd;
3122 static PyObject *__pyx_n_s_range;
3123 static PyObject *__pyx_n_s_rarray;
3124 static PyObject *__pyx_n_s_reduce;
3125 static PyObject *__pyx_n_s_reduce_2;
3126 static PyObject *__pyx_n_s_reduce_cython;
3127 static PyObject *__pyx_n_s_reduce_ex;
3128 static PyObject *__pyx_n_s_refcheck;
3129 static PyObject *__pyx_n_s_resize;
3130 static PyObject *__pyx_n_s_ret;
3131 static PyObject *__pyx_n_s_reverse;
3132 static PyObject *__pyx_n_u_right;
3133 static PyObject *__pyx_kp_b_s_d_d;
3134 static PyObject *__pyx_kp_u_s_not_supported;
3135 static PyObject *__pyx_n_s_score;
3136 static PyObject *__pyx_n_u_score;
3137 static PyObject *__pyx_n_s_scoreTrackII;
3138 static PyObject *__pyx_kp_u_scoreTrackI_Revision;
3139 static PyObject *__pyx_kp_u_scoreTrack_classes;
3140 static PyObject *__pyx_n_s_searchsorted;
3141 static PyObject *__pyx_n_s_self;
3142 static PyObject *__pyx_n_s_set_pseudocount;
3143 static PyObject *__pyx_n_s_setstate;
3144 static PyObject *__pyx_n_s_setstate_cython;
3145 static PyObject *__pyx_n_s_size;
3146 static PyObject *__pyx_n_s_sorted;
3147 static PyObject *__pyx_n_s_split;
3148 static PyObject *__pyx_n_s_start;
3149 static PyObject *__pyx_n_u_start;
3150 static PyObject *__pyx_n_s_stderr_on;
3151 static PyObject *__pyx_kp_s_stringsource;
3152 static PyObject *__pyx_n_s_sum;
3153 static PyObject *__pyx_n_s_summit;
3154 static PyObject *__pyx_n_s_sym_logLR_dict;
3155 static PyObject *__pyx_n_s_t;
3156 static PyObject *__pyx_n_s_t1bdg;
3157 static PyObject *__pyx_n_s_t2bdg;
3158 static PyObject *__pyx_n_s_test;
3159 static PyObject *__pyx_n_s_thickEnd;
3160 static PyObject *__pyx_n_s_thickStart;
3161 static PyObject *__pyx_n_s_total;
3162 static PyObject *__pyx_kp_u_track_type_bedGraph_name;
3163 static PyObject *__pyx_n_s_treat_depth;
3164 static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd;
3165 static PyObject *__pyx_n_s_update;
3166 static PyObject *__pyx_n_s_v11;
3167 static PyObject *__pyx_n_s_v11n;
3168 static PyObject *__pyx_n_s_v1add;
3169 static PyObject *__pyx_n_s_v1array;
3170 static PyObject *__pyx_n_s_v2;
3171 static PyObject *__pyx_n_s_v21;
3172 static PyObject *__pyx_n_s_v21n;
3173 static PyObject *__pyx_n_s_v2add;
3174 static PyObject *__pyx_n_s_v2array;
3175 static PyObject *__pyx_n_s_v2n;
3176 static PyObject *__pyx_n_s_v2s;
3177 static PyObject *__pyx_n_s_value;
3178 static PyObject *__pyx_n_s_values;
3179 static PyObject *__pyx_n_s_version;
3180 static PyObject *__pyx_n_s_where;
3181 static PyObject *__pyx_n_s_write;
3182 static PyObject *__pyx_n_s_write_bedGraph;
3183 static PyObject *__pyx_n_s_write_matrix;
3184 static PyObject *__pyx_n_s_x;
3185 static PyObject *__pyx_n_s_y;
3186 static PyObject *__pyx_n_s_zeros;
3187 static PyObject *__pyx_n_s_zip;
3188 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
3189 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_2add_chromosome(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_5numpy_int32_t __pyx_v_chrom_max_len); /* proto */
3190 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_4add(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_chromosome, __pyx_t_5numpy_int32_t __pyx_v_endpos, __pyx_t_5numpy_float64_t __pyx_v_V1, __pyx_t_5numpy_float64_t __pyx_v_V2); /* proto */
3191 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_6finalize(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
3192 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_8get_data_by_chr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_chromosome); /* proto */
3193 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_10get_chr_names(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
3194 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_12write_bedGraph(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_fhd, CYTHON_UNUSED PyObject *__pyx_v_name, CYTHON_UNUSED PyObject *__pyx_v_description, PyObject *__pyx_v_colname); /* proto */
3195 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_14total(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
3196 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_16extract_value(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_bdgTrack2); /* proto */
3197 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_18extract_average(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_bdgTrack2); /* proto */
3198 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_16CombinedTwoTrack_20extract_sum(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_bdgTrack2); /* proto */
3199 static int __pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII___init__(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, __pyx_t_5numpy_float64_t __pyx_v_treat_depth, __pyx_t_5numpy_float64_t __pyx_v_ctrl_depth, CYTHON_UNUSED PyBoolObject *__pyx_v_stderr_on, __pyx_t_5numpy_float64_t __pyx_v_pseudocount); /* proto */
3200 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_2set_pseudocount(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, __pyx_t_5numpy_float64_t __pyx_v_pseudocount); /* proto */
3201 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_4enable_trackline(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto */
3202 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_6add_chromosome(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_5numpy_int32_t __pyx_v_chrom_max_len); /* proto */
3203 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_8add(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_chromosome, __pyx_t_5numpy_int32_t __pyx_v_endpos, __pyx_t_5numpy_float64_t __pyx_v_chip, __pyx_t_5numpy_float64_t __pyx_v_control); /* proto */
3204 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_10finalize(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto */
3205 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_12get_data_by_chr(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_chromosome); /* proto */
3206 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_14get_chr_names(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto */
3207 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_16change_normalization_method(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, char __pyx_v_normalization_method); /* proto */
3208 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_18change_score_method(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, char __pyx_v_scoring_method); /* proto */
3209 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_20make_pq_table(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto */
3210 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_22write_bedGraph(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_fhd, PyObject *__pyx_v_name, PyObject *__pyx_v_description, short __pyx_v_column); /* proto */
3211 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_24call_peaks(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, __pyx_t_5numpy_float64_t __pyx_v_cutoff, __pyx_t_5numpy_int32_t __pyx_v_min_length, __pyx_t_5numpy_int32_t __pyx_v_max_gap, PyBoolObject *__pyx_v_call_summits); /* proto */
3212 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_26call_broadpeaks(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, __pyx_t_5numpy_float64_t __pyx_v_lvl1_cutoff, __pyx_t_5numpy_float64_t __pyx_v_lvl2_cutoff, __pyx_t_5numpy_int32_t __pyx_v_min_length, __pyx_t_5numpy_int32_t __pyx_v_lvl1_max_gap, __pyx_t_5numpy_int32_t __pyx_v_lvl2_max_gap); /* proto */
3213 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_28__add_broadpeak(CYTHON_UNUSED struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v_bpeaks, PyObject *__pyx_v_chrom, PyObject *__pyx_v_lvl2peak, PyObject *__pyx_v_lvl1peakset); /* proto */
3214 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_30__reduce_cython__(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self); /* proto */
3215 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_32__setstate_cython__(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
3216 static int __pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores___init__(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_t1bdg, PyObject *__pyx_v_c1bdg, PyObject *__pyx_v_t2bdg, PyObject *__pyx_v_c2bdg, __pyx_t_5numpy_float64_t __pyx_v_cond1_factor, __pyx_t_5numpy_float64_t __pyx_v_cond2_factor, __pyx_t_5numpy_float64_t __pyx_v_pseudocount, CYTHON_UNUSED PyObject *__pyx_v_proportion_background_empirical_distribution); /* proto */
3217 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_2set_pseudocount(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, __pyx_t_5numpy_float64_t __pyx_v_pseudocount); /* proto */
3218 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_4build(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self); /* proto */
3219 static PyObject *__pyx_lambda_funcdef_lambda(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_x, PyObject *__pyx_v_y); /* proto */
3220 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_6get_common_chrs(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self); /* proto */
3221 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_8finalize(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self); /* proto */
3222 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_10get_data_by_chr(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_chromosome); /* proto */
3223 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_12get_chr_names(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self); /* proto */
3224 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_14write_bedGraph(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_fhd, PyObject *__pyx_v_name, PyObject *__pyx_v_description, short __pyx_v_column); /* proto */
3225 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_16write_matrix(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v_fhd, PyObject *__pyx_v_name, PyObject *__pyx_v_description); /* proto */
3226 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_18call_peaks(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, __pyx_t_5numpy_float64_t __pyx_v_cutoff, __pyx_t_5numpy_int32_t __pyx_v_min_length, __pyx_t_5numpy_int32_t __pyx_v_max_gap, PyBoolObject *__pyx_v_call_summits); /* proto */
3227 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_20__reduce_cython__(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self); /* proto */
3228 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_22__setstate_cython__(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
3229 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack___pyx_unpickle_scoreTrackII(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
3230 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_2__pyx_unpickle_TwoConditionScores(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
3231 static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
3232 static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */
3233 static PyObject *__pyx_tp_new_5MACS2_2IO_10ScoreTrack_scoreTrackII(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
3234 static PyObject *__pyx_tp_new_5MACS2_2IO_10ScoreTrack_TwoConditionScores(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
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11634 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, (__pyx_v_self->treat_edm / __pyx_v_self->ctrl_edm), (__pyx_v_self->treat_edm / __pyx_v_self->ctrl_edm)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 582, __pyx_L1_error)
11635 __Pyx_GOTREF(__pyx_t_1);
11636 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11637
11638 /* "MACS2/IO/ScoreTrack.pyx":581
11639 * if self.normalization_method == ord('T'): # do nothing
11640 * pass
11641 * elif self.normalization_method == ord('C'): # <<<<<<<<<<<<<<
11642 * self.normalize( self.treat_edm/self.ctrl_edm, self.treat_edm/self.ctrl_edm )
11643 * elif self.normalization_method == ord('M'):
11644 */
11645 break;
11646 case 77:
11647
11648 /* "MACS2/IO/ScoreTrack.pyx":584
11649 * self.normalize( self.treat_edm/self.ctrl_edm, self.treat_edm/self.ctrl_edm )
11650 * elif self.normalization_method == ord('M'):
11651 * self.normalize( self.treat_edm, self.treat_edm ) # <<<<<<<<<<<<<<
11652 * elif self.normalization_method == ord('N'):
11653 * self.normalize( 1, self.treat_edm/self.ctrl_edm )
11654 */
11655 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, __pyx_v_self->treat_edm, __pyx_v_self->treat_edm); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 584, __pyx_L1_error)
11656 __Pyx_GOTREF(__pyx_t_1);
11657 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11658
11659 /* "MACS2/IO/ScoreTrack.pyx":583
11660 * elif self.normalization_method == ord('C'):
11661 * self.normalize( self.treat_edm/self.ctrl_edm, self.treat_edm/self.ctrl_edm )
11662 * elif self.normalization_method == ord('M'): # <<<<<<<<<<<<<<
11663 * self.normalize( self.treat_edm, self.treat_edm )
11664 * elif self.normalization_method == ord('N'):
11665 */
11666 break;
11667 case 78:
11668
11669 /* "MACS2/IO/ScoreTrack.pyx":586
11670 * self.normalize( self.treat_edm, self.treat_edm )
11671 * elif self.normalization_method == ord('N'):
11672 * self.normalize( 1, self.treat_edm/self.ctrl_edm ) # <<<<<<<<<<<<<<
11673 * else:
11674 * raise NotImplemented
11675 */
11676 if (unlikely(__pyx_v_self->ctrl_edm == 0)) {
11677 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11678 __PYX_ERR(0, 586, __pyx_L1_error)
11679 }
11680 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, 1.0, (__pyx_v_self->treat_edm / __pyx_v_self->ctrl_edm)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 586, __pyx_L1_error)
11681 __Pyx_GOTREF(__pyx_t_1);
11682 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11683
11684 /* "MACS2/IO/ScoreTrack.pyx":585
11685 * elif self.normalization_method == ord('M'):
11686 * self.normalize( self.treat_edm, self.treat_edm )
11687 * elif self.normalization_method == ord('N'): # <<<<<<<<<<<<<<
11688 * self.normalize( 1, self.treat_edm/self.ctrl_edm )
11689 * else:
11690 */
11691 break;
11692 default:
11693
11694 /* "MACS2/IO/ScoreTrack.pyx":588
11695 * self.normalize( 1, self.treat_edm/self.ctrl_edm )
11696 * else:
11697 * raise NotImplemented # <<<<<<<<<<<<<<
11698 * self.normalization_method = ord('T')
11699 * elif normalization_method == ord('C'):
11700 */
11701 __Pyx_Raise(__pyx_builtin_NotImplemented, 0, 0, 0);
11702 __PYX_ERR(0, 588, __pyx_L1_error)
11703 break;
11704 }
11705
11706 /* "MACS2/IO/ScoreTrack.pyx":589
11707 * else:
11708 * raise NotImplemented
11709 * self.normalization_method = ord('T') # <<<<<<<<<<<<<<
11710 * elif normalization_method == ord('C'):
11711 * if self.normalization_method == ord('T'):
11712 */
11713 __pyx_v_self->normalization_method = 84;
11714
11715 /* "MACS2/IO/ScoreTrack.pyx":578
11716 * N: not set/ raw pileup
11717 * """
11718 * if normalization_method == ord('T'): # <<<<<<<<<<<<<<
11719 * if self.normalization_method == ord('T'): # do nothing
11720 * pass
11721 */
11722 break;
11723 case 67:
11724
11725 /* "MACS2/IO/ScoreTrack.pyx":591
11726 * self.normalization_method = ord('T')
11727 * elif normalization_method == ord('C'):
11728 * if self.normalization_method == ord('T'): # <<<<<<<<<<<<<<
11729 * self.normalize( self.ctrl_edm/self.treat_edm, self.ctrl_edm/self.treat_edm )
11730 * elif self.normalization_method == ord('C'): # do nothing
11731 */
11732 switch (__pyx_v_self->normalization_method) {
11733 case 84:
11734
11735 /* "MACS2/IO/ScoreTrack.pyx":592
11736 * elif normalization_method == ord('C'):
11737 * if self.normalization_method == ord('T'):
11738 * self.normalize( self.ctrl_edm/self.treat_edm, self.ctrl_edm/self.treat_edm ) # <<<<<<<<<<<<<<
11739 * elif self.normalization_method == ord('C'): # do nothing
11740 * pass
11741 */
11742 if (unlikely(__pyx_v_self->treat_edm == 0)) {
11743 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11744 __PYX_ERR(0, 592, __pyx_L1_error)
11745 }
11746 if (unlikely(__pyx_v_self->treat_edm == 0)) {
11747 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11748 __PYX_ERR(0, 592, __pyx_L1_error)
11749 }
11750 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, (__pyx_v_self->ctrl_edm / __pyx_v_self->treat_edm), (__pyx_v_self->ctrl_edm / __pyx_v_self->treat_edm)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 592, __pyx_L1_error)
11751 __Pyx_GOTREF(__pyx_t_1);
11752 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11753
11754 /* "MACS2/IO/ScoreTrack.pyx":591
11755 * self.normalization_method = ord('T')
11756 * elif normalization_method == ord('C'):
11757 * if self.normalization_method == ord('T'): # <<<<<<<<<<<<<<
11758 * self.normalize( self.ctrl_edm/self.treat_edm, self.ctrl_edm/self.treat_edm )
11759 * elif self.normalization_method == ord('C'): # do nothing
11760 */
11761 break;
11762 case 67:
11763
11764 /* "MACS2/IO/ScoreTrack.pyx":593
11765 * if self.normalization_method == ord('T'):
11766 * self.normalize( self.ctrl_edm/self.treat_edm, self.ctrl_edm/self.treat_edm )
11767 * elif self.normalization_method == ord('C'): # do nothing # <<<<<<<<<<<<<<
11768 * pass
11769 * elif self.normalization_method == ord('M'):
11770 */
11771 break;
11772 case 77:
11773
11774 /* "MACS2/IO/ScoreTrack.pyx":596
11775 * pass
11776 * elif self.normalization_method == ord('M'):
11777 * self.normalize( self.ctrl_edm, self.ctrl_edm ) # <<<<<<<<<<<<<<
11778 * elif self.normalization_method == ord('N'):
11779 * self.normalize( self.ctrl_edm/self.treat_edm, 1 )
11780 */
11781 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, __pyx_v_self->ctrl_edm, __pyx_v_self->ctrl_edm); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 596, __pyx_L1_error)
11782 __Pyx_GOTREF(__pyx_t_1);
11783 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11784
11785 /* "MACS2/IO/ScoreTrack.pyx":595
11786 * elif self.normalization_method == ord('C'): # do nothing
11787 * pass
11788 * elif self.normalization_method == ord('M'): # <<<<<<<<<<<<<<
11789 * self.normalize( self.ctrl_edm, self.ctrl_edm )
11790 * elif self.normalization_method == ord('N'):
11791 */
11792 break;
11793 case 78:
11794
11795 /* "MACS2/IO/ScoreTrack.pyx":598
11796 * self.normalize( self.ctrl_edm, self.ctrl_edm )
11797 * elif self.normalization_method == ord('N'):
11798 * self.normalize( self.ctrl_edm/self.treat_edm, 1 ) # <<<<<<<<<<<<<<
11799 * else:
11800 * raise NotImplemented
11801 */
11802 if (unlikely(__pyx_v_self->treat_edm == 0)) {
11803 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11804 __PYX_ERR(0, 598, __pyx_L1_error)
11805 }
11806 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, (__pyx_v_self->ctrl_edm / __pyx_v_self->treat_edm), 1.0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 598, __pyx_L1_error)
11807 __Pyx_GOTREF(__pyx_t_1);
11808 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11809
11810 /* "MACS2/IO/ScoreTrack.pyx":597
11811 * elif self.normalization_method == ord('M'):
11812 * self.normalize( self.ctrl_edm, self.ctrl_edm )
11813 * elif self.normalization_method == ord('N'): # <<<<<<<<<<<<<<
11814 * self.normalize( self.ctrl_edm/self.treat_edm, 1 )
11815 * else:
11816 */
11817 break;
11818 default:
11819
11820 /* "MACS2/IO/ScoreTrack.pyx":600
11821 * self.normalize( self.ctrl_edm/self.treat_edm, 1 )
11822 * else:
11823 * raise NotImplemented # <<<<<<<<<<<<<<
11824 * self.normalization_method = ord('C')
11825 * elif normalization_method == ord('M'):
11826 */
11827 __Pyx_Raise(__pyx_builtin_NotImplemented, 0, 0, 0);
11828 __PYX_ERR(0, 600, __pyx_L1_error)
11829 break;
11830 }
11831
11832 /* "MACS2/IO/ScoreTrack.pyx":601
11833 * else:
11834 * raise NotImplemented
11835 * self.normalization_method = ord('C') # <<<<<<<<<<<<<<
11836 * elif normalization_method == ord('M'):
11837 * if self.normalization_method == ord('T'):
11838 */
11839 __pyx_v_self->normalization_method = 67;
11840
11841 /* "MACS2/IO/ScoreTrack.pyx":590
11842 * raise NotImplemented
11843 * self.normalization_method = ord('T')
11844 * elif normalization_method == ord('C'): # <<<<<<<<<<<<<<
11845 * if self.normalization_method == ord('T'):
11846 * self.normalize( self.ctrl_edm/self.treat_edm, self.ctrl_edm/self.treat_edm )
11847 */
11848 break;
11849 case 77:
11850
11851 /* "MACS2/IO/ScoreTrack.pyx":603
11852 * self.normalization_method = ord('C')
11853 * elif normalization_method == ord('M'):
11854 * if self.normalization_method == ord('T'): # <<<<<<<<<<<<<<
11855 * self.normalize( 1/self.treat_edm, 1/self.treat_edm )
11856 * elif self.normalization_method == ord('C'):
11857 */
11858 switch (__pyx_v_self->normalization_method) {
11859 case 84:
11860
11861 /* "MACS2/IO/ScoreTrack.pyx":604
11862 * elif normalization_method == ord('M'):
11863 * if self.normalization_method == ord('T'):
11864 * self.normalize( 1/self.treat_edm, 1/self.treat_edm ) # <<<<<<<<<<<<<<
11865 * elif self.normalization_method == ord('C'):
11866 * self.normalize( 1/self.ctrl_edm, 1/self.ctrl_edm )
11867 */
11868 if (unlikely(__pyx_v_self->treat_edm == 0)) {
11869 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11870 __PYX_ERR(0, 604, __pyx_L1_error)
11871 }
11872 if (unlikely(__pyx_v_self->treat_edm == 0)) {
11873 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11874 __PYX_ERR(0, 604, __pyx_L1_error)
11875 }
11876 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, (1.0 / __pyx_v_self->treat_edm), (1.0 / __pyx_v_self->treat_edm)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 604, __pyx_L1_error)
11877 __Pyx_GOTREF(__pyx_t_1);
11878 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11879
11880 /* "MACS2/IO/ScoreTrack.pyx":603
11881 * self.normalization_method = ord('C')
11882 * elif normalization_method == ord('M'):
11883 * if self.normalization_method == ord('T'): # <<<<<<<<<<<<<<
11884 * self.normalize( 1/self.treat_edm, 1/self.treat_edm )
11885 * elif self.normalization_method == ord('C'):
11886 */
11887 break;
11888 case 67:
11889
11890 /* "MACS2/IO/ScoreTrack.pyx":606
11891 * self.normalize( 1/self.treat_edm, 1/self.treat_edm )
11892 * elif self.normalization_method == ord('C'):
11893 * self.normalize( 1/self.ctrl_edm, 1/self.ctrl_edm ) # <<<<<<<<<<<<<<
11894 * elif self.normalization_method == ord('M'): # do nothing
11895 * pass
11896 */
11897 if (unlikely(__pyx_v_self->ctrl_edm == 0)) {
11898 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11899 __PYX_ERR(0, 606, __pyx_L1_error)
11900 }
11901 if (unlikely(__pyx_v_self->ctrl_edm == 0)) {
11902 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11903 __PYX_ERR(0, 606, __pyx_L1_error)
11904 }
11905 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, (1.0 / __pyx_v_self->ctrl_edm), (1.0 / __pyx_v_self->ctrl_edm)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 606, __pyx_L1_error)
11906 __Pyx_GOTREF(__pyx_t_1);
11907 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11908
11909 /* "MACS2/IO/ScoreTrack.pyx":605
11910 * if self.normalization_method == ord('T'):
11911 * self.normalize( 1/self.treat_edm, 1/self.treat_edm )
11912 * elif self.normalization_method == ord('C'): # <<<<<<<<<<<<<<
11913 * self.normalize( 1/self.ctrl_edm, 1/self.ctrl_edm )
11914 * elif self.normalization_method == ord('M'): # do nothing
11915 */
11916 break;
11917 case 77:
11918
11919 /* "MACS2/IO/ScoreTrack.pyx":607
11920 * elif self.normalization_method == ord('C'):
11921 * self.normalize( 1/self.ctrl_edm, 1/self.ctrl_edm )
11922 * elif self.normalization_method == ord('M'): # do nothing # <<<<<<<<<<<<<<
11923 * pass
11924 * elif self.normalization_method == ord('N'):
11925 */
11926 break;
11927 case 78:
11928
11929 /* "MACS2/IO/ScoreTrack.pyx":610
11930 * pass
11931 * elif self.normalization_method == ord('N'):
11932 * self.normalize( 1/self.treat_edm, 1/self.ctrl_edm ) # <<<<<<<<<<<<<<
11933 * else:
11934 * raise NotImplemented
11935 */
11936 if (unlikely(__pyx_v_self->treat_edm == 0)) {
11937 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11938 __PYX_ERR(0, 610, __pyx_L1_error)
11939 }
11940 if (unlikely(__pyx_v_self->ctrl_edm == 0)) {
11941 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
11942 __PYX_ERR(0, 610, __pyx_L1_error)
11943 }
11944 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, (1.0 / __pyx_v_self->treat_edm), (1.0 / __pyx_v_self->ctrl_edm)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 610, __pyx_L1_error)
11945 __Pyx_GOTREF(__pyx_t_1);
11946 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11947
11948 /* "MACS2/IO/ScoreTrack.pyx":609
11949 * elif self.normalization_method == ord('M'): # do nothing
11950 * pass
11951 * elif self.normalization_method == ord('N'): # <<<<<<<<<<<<<<
11952 * self.normalize( 1/self.treat_edm, 1/self.ctrl_edm )
11953 * else:
11954 */
11955 break;
11956 default:
11957
11958 /* "MACS2/IO/ScoreTrack.pyx":612
11959 * self.normalize( 1/self.treat_edm, 1/self.ctrl_edm )
11960 * else:
11961 * raise NotImplemented # <<<<<<<<<<<<<<
11962 * self.normalization_method = ord('M')
11963 * elif normalization_method == ord('N'):
11964 */
11965 __Pyx_Raise(__pyx_builtin_NotImplemented, 0, 0, 0);
11966 __PYX_ERR(0, 612, __pyx_L1_error)
11967 break;
11968 }
11969
11970 /* "MACS2/IO/ScoreTrack.pyx":613
11971 * else:
11972 * raise NotImplemented
11973 * self.normalization_method = ord('M') # <<<<<<<<<<<<<<
11974 * elif normalization_method == ord('N'):
11975 * if self.normalization_method == ord('T'):
11976 */
11977 __pyx_v_self->normalization_method = 77;
11978
11979 /* "MACS2/IO/ScoreTrack.pyx":602
11980 * raise NotImplemented
11981 * self.normalization_method = ord('C')
11982 * elif normalization_method == ord('M'): # <<<<<<<<<<<<<<
11983 * if self.normalization_method == ord('T'):
11984 * self.normalize( 1/self.treat_edm, 1/self.treat_edm )
11985 */
11986 break;
11987 case 78:
11988
11989 /* "MACS2/IO/ScoreTrack.pyx":615
11990 * self.normalization_method = ord('M')
11991 * elif normalization_method == ord('N'):
11992 * if self.normalization_method == ord('T'): # <<<<<<<<<<<<<<
11993 * self.normalize( self.treat_edm, self.treat_edm )
11994 * elif self.normalization_method == ord('C'):
11995 */
11996 switch (__pyx_v_self->normalization_method) {
11997 case 84:
11998
11999 /* "MACS2/IO/ScoreTrack.pyx":616
12000 * elif normalization_method == ord('N'):
12001 * if self.normalization_method == ord('T'):
12002 * self.normalize( self.treat_edm, self.treat_edm ) # <<<<<<<<<<<<<<
12003 * elif self.normalization_method == ord('C'):
12004 * self.normalize( self.ctrl_edm, self.ctrl_edm )
12005 */
12006 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, __pyx_v_self->treat_edm, __pyx_v_self->treat_edm); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 616, __pyx_L1_error)
12007 __Pyx_GOTREF(__pyx_t_1);
12008 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
12009
12010 /* "MACS2/IO/ScoreTrack.pyx":615
12011 * self.normalization_method = ord('M')
12012 * elif normalization_method == ord('N'):
12013 * if self.normalization_method == ord('T'): # <<<<<<<<<<<<<<
12014 * self.normalize( self.treat_edm, self.treat_edm )
12015 * elif self.normalization_method == ord('C'):
12016 */
12017 break;
12018 case 67:
12019
12020 /* "MACS2/IO/ScoreTrack.pyx":618
12021 * self.normalize( self.treat_edm, self.treat_edm )
12022 * elif self.normalization_method == ord('C'):
12023 * self.normalize( self.ctrl_edm, self.ctrl_edm ) # <<<<<<<<<<<<<<
12024 * elif self.normalization_method == ord('M'):
12025 * self.normalize( self.treat_edm, self.ctrl_edm )
12026 */
12027 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, __pyx_v_self->ctrl_edm, __pyx_v_self->ctrl_edm); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 618, __pyx_L1_error)
12028 __Pyx_GOTREF(__pyx_t_1);
12029 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
12030
12031 /* "MACS2/IO/ScoreTrack.pyx":617
12032 * if self.normalization_method == ord('T'):
12033 * self.normalize( self.treat_edm, self.treat_edm )
12034 * elif self.normalization_method == ord('C'): # <<<<<<<<<<<<<<
12035 * self.normalize( self.ctrl_edm, self.ctrl_edm )
12036 * elif self.normalization_method == ord('M'):
12037 */
12038 break;
12039 case 77:
12040
12041 /* "MACS2/IO/ScoreTrack.pyx":620
12042 * self.normalize( self.ctrl_edm, self.ctrl_edm )
12043 * elif self.normalization_method == ord('M'):
12044 * self.normalize( self.treat_edm, self.ctrl_edm ) # <<<<<<<<<<<<<<
12045 * elif self.normalization_method == ord('N'): # do nothing
12046 * pass
12047 */
12048 __pyx_t_1 = ((struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_scoreTrackII *)__pyx_v_self->__pyx_vtab)->normalize(__pyx_v_self, __pyx_v_self->treat_edm, __pyx_v_self->ctrl_edm); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 620, __pyx_L1_error)
12049 __Pyx_GOTREF(__pyx_t_1);
12050 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
12051
12052 /* "MACS2/IO/ScoreTrack.pyx":619
12053 * elif self.normalization_method == ord('C'):
12054 * self.normalize( self.ctrl_edm, self.ctrl_edm )
12055 * elif self.normalization_method == ord('M'): # <<<<<<<<<<<<<<
12056 * self.normalize( self.treat_edm, self.ctrl_edm )
12057 * elif self.normalization_method == ord('N'): # do nothing
12058 */
12059 break;
12060 case 78:
12061
12062 /* "MACS2/IO/ScoreTrack.pyx":621
12063 * elif self.normalization_method == ord('M'):
12064 * self.normalize( self.treat_edm, self.ctrl_edm )
12065 * elif self.normalization_method == ord('N'): # do nothing # <<<<<<<<<<<<<<
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20281 * # use lvl2_peaks as linking regions between lvl1_peaks
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__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_33__setstate_cython__(PyObject * __pyx_v_self,PyObject * __pyx_v___pyx_state)22161 static PyObject *__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_33__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
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22167 /* function exit code */
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22171
__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_32__setstate_cython__(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII * __pyx_v_self,PyObject * __pyx_v___pyx_state)22172 static PyObject *__pyx_pf_5MACS2_2IO_10ScoreTrack_12scoreTrackII_32__setstate_cython__(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
22173 PyObject *__pyx_r = NULL;
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22175 __Pyx_RefNannyDeclarations
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22180 /* "(tree fragment)":17
22181 * return __pyx_unpickle_scoreTrackII, (type(self), 0x77c358c, state)
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22185 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(1, 17, __pyx_L1_error)
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22211 /* "MACS2/IO/ScoreTrack.pyx":1310
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22213 *
22214 * def __init__ (self, t1bdg, c1bdg, t2bdg, c2bdg, float64_t cond1_factor = 1.0, float64_t cond2_factor = 1.0, float64_t pseudocount = 0.01, proportion_background_empirical_distribution = 0.99999 ): # <<<<<<<<<<<<<<
22215 * """
22216 * t1bdg: a bedGraphTrackI object for treat 1
22217 */
22218
22219 /* Python wrapper */
22220 static int __pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
22221 static char __pyx_doc_5MACS2_2IO_10ScoreTrack_18TwoConditionScores___init__[] = "\n t1bdg: a bedGraphTrackI object for treat 1\n c1bdg: a bedGraphTrackI object for control 1\n t2bdg: a bedGraphTrackI object for treat 2\n c2bdg: a bedGraphTrackI object for control 2\n\n cond1_factor: this will be multiplied to values in t1bdg and c1bdg\n cond2_factor: this will be multiplied to values in t2bdg and c2bdg\n\n pseudocount: pseudocount, by default 0.01.\n\n proportion_background_empirical_distribution: proportion of genome as the background to build empirical distribution\n\n ";
22222 #if CYTHON_COMPILING_IN_CPYTHON
22223 struct wrapperbase __pyx_wrapperbase_5MACS2_2IO_10ScoreTrack_18TwoConditionScores___init__;
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__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_1__init__(PyObject * __pyx_v_self,PyObject * __pyx_args,PyObject * __pyx_kwds)22225 static int __pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
22226 PyObject *__pyx_v_t1bdg = 0;
22227 PyObject *__pyx_v_c1bdg = 0;
22228 PyObject *__pyx_v_t2bdg = 0;
22229 PyObject *__pyx_v_c2bdg = 0;
22230 __pyx_t_5numpy_float64_t __pyx_v_cond1_factor;
22231 __pyx_t_5numpy_float64_t __pyx_v_cond2_factor;
22232 __pyx_t_5numpy_float64_t __pyx_v_pseudocount;
22233 CYTHON_UNUSED PyObject *__pyx_v_proportion_background_empirical_distribution = 0;
22234 int __pyx_r;
22235 __Pyx_RefNannyDeclarations
22236 __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
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22239 PyObject* values[8] = {0,0,0,0,0,0,0,0};
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22246 CYTHON_FALLTHROUGH;
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22248 CYTHON_FALLTHROUGH;
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22250 CYTHON_FALLTHROUGH;
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22252 CYTHON_FALLTHROUGH;
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22254 CYTHON_FALLTHROUGH;
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22256 CYTHON_FALLTHROUGH;
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22258 CYTHON_FALLTHROUGH;
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22260 CYTHON_FALLTHROUGH;
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22262 default: goto __pyx_L5_argtuple_error;
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22264 kw_args = PyDict_Size(__pyx_kwds);
22265 switch (pos_args) {
22266 case 0:
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22270 case 1:
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22275 CYTHON_FALLTHROUGH;
22276 case 2:
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22279 __Pyx_RaiseArgtupleInvalid("__init__", 0, 4, 8, 2); __PYX_ERR(0, 1310, __pyx_L3_error)
22280 }
22281 CYTHON_FALLTHROUGH;
22282 case 3:
22283 if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_c2bdg)) != 0)) kw_args--;
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22285 __Pyx_RaiseArgtupleInvalid("__init__", 0, 4, 8, 3); __PYX_ERR(0, 1310, __pyx_L3_error)
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22299 CYTHON_FALLTHROUGH;
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22302 PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pseudocount);
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22305 CYTHON_FALLTHROUGH;
22306 case 7:
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22318 CYTHON_FALLTHROUGH;
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22320 CYTHON_FALLTHROUGH;
22321 case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
22322 CYTHON_FALLTHROUGH;
22323 case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
22324 CYTHON_FALLTHROUGH;
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22326 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
22327 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
22328 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
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22331 }
22332 }
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22377 /* "MACS2/IO/ScoreTrack.pyx":1326
22378 * """
22379 *
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22382 * # of a region; Second: treatment
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22392 /* "MACS2/IO/ScoreTrack.pyx":1334
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22395 * self.datalength = {} # <<<<<<<<<<<<<<
22396 * self.cond1_factor = cond1_factor
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22407 /* "MACS2/IO/ScoreTrack.pyx":1335
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22409 * self.datalength = {}
22410 * self.cond1_factor = cond1_factor # <<<<<<<<<<<<<<
22411 * self.cond2_factor = cond2_factor
22412 * self.pseudocount = pseudocount
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22416 /* "MACS2/IO/ScoreTrack.pyx":1336
22417 * self.datalength = {}
22418 * self.cond1_factor = cond1_factor
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22420 * self.pseudocount = pseudocount
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22425 /* "MACS2/IO/ScoreTrack.pyx":1337
22426 * self.cond1_factor = cond1_factor
22427 * self.cond2_factor = cond2_factor
22428 * self.pseudocount = pseudocount # <<<<<<<<<<<<<<
22429 * self.pvalue_stat1 = {}
22430 * self.pvalue_stat2 = {}
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22433
22434 /* "MACS2/IO/ScoreTrack.pyx":1338
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22436 * self.pseudocount = pseudocount
22437 * self.pvalue_stat1 = {} # <<<<<<<<<<<<<<
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22449 /* "MACS2/IO/ScoreTrack.pyx":1339
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22451 * self.pvalue_stat1 = {}
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22477 /* "MACS2/IO/ScoreTrack.pyx":1341
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22498 __Pyx_GIVEREF(__pyx_v_t2bdg);
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22505 * self.t2bdg = t2bdg
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30314 /* "(tree fragment)":9
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__pyx_f_5MACS2_2IO_10ScoreTrack___pyx_unpickle_TwoConditionScores__set_state(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores * __pyx_v___pyx_result,PyObject * __pyx_v___pyx_state)30378 static PyObject *__pyx_f_5MACS2_2IO_10ScoreTrack___pyx_unpickle_TwoConditionScores__set_state(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *__pyx_v___pyx_result, PyObject *__pyx_v___pyx_state) {
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30542 /* "(tree fragment)":13
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30909 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":289
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30911 * else:
30912 * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) # <<<<<<<<<<<<<<
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30915 */
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30918
30919 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":290
30920 * else:
30921 * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
30922 * info.shape = <Py_ssize_t*>PyArray_DIMS(self) # <<<<<<<<<<<<<<
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30927 }
30928 __pyx_L9:;
30929
30930 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":291
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30932 * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
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30939 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":292
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30948 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":293
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30959 * cdef int t
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30968 * cdef char* f = NULL
30969 * cdef dtype descr = <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
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30977 __pyx_t_3 = 0;
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30979 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":300
30980 * cdef int offset
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30990 __pyx_v_info->obj = ((PyObject *)__pyx_v_self);
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30992 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":302
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31000 if (__pyx_t_1) {
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31002 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":303
31003 *
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31010 __pyx_v_t = __pyx_t_4;
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31012 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":304
31013 * if not PyDataType_HASFIELDS(descr):
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31020 if (!__pyx_t_2) {
31021 goto __pyx_L15_next_or;
31022 } else {
31023 }
31024 __pyx_t_2 = (__pyx_v_little_endian != 0);
31025 if (!__pyx_t_2) {
31026 } else {
31027 __pyx_t_1 = __pyx_t_2;
31028 goto __pyx_L14_bool_binop_done;
31029 }
31030 __pyx_L15_next_or:;
31031
31032 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":305
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31043 goto __pyx_L14_bool_binop_done;
31044 }
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31046 __pyx_t_1 = __pyx_t_2;
31047 __pyx_L14_bool_binop_done:;
31048
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31074 * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
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31080 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":307
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31082 * raise ValueError(u"Non-native byte order not supported")
31083 * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<<
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31089 __pyx_v_f = ((char *)"b");
31090 break;
31091 case NPY_UBYTE:
31092
31093 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":308
31094 * raise ValueError(u"Non-native byte order not supported")
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31096 * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<<
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31101 break;
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31103
31104 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":309
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31107 * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<<
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31111 __pyx_v_f = ((char *)"h");
31112 break;
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31114
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31123 break;
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31158
31159 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":314
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31285 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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31288 }
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31299 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":327
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31308
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32884 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":1042
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33065 __pyx_L5_except_error:;
33066
33067 /* "../../../Codes/TLPython3/lib/python3.8/site-packages/Cython/Includes/numpy/__init__.pxd":1047
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33076 __Pyx_XGIVEREF(__pyx_t_3);
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33095 __Pyx_XDECREF(__pyx_t_6);
33096 __Pyx_XDECREF(__pyx_t_7);
33097 __Pyx_XDECREF(__pyx_t_8);
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33108 struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *p;
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33126
__pyx_tp_dealloc_5MACS2_2IO_10ScoreTrack_scoreTrackII(PyObject * o)33127 static void __pyx_tp_dealloc_5MACS2_2IO_10ScoreTrack_scoreTrackII(PyObject *o) {
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33136 Py_CLEAR(p->data_stderr);
33137 Py_CLEAR(p->datalength);
33138 Py_CLEAR(p->trackline);
33139 Py_CLEAR(p->stderr_on);
33140 Py_CLEAR(p->pvalue_stat);
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33142 }
33143
__pyx_tp_traverse_5MACS2_2IO_10ScoreTrack_scoreTrackII(PyObject * o,visitproc v,void * a)33144 static int __pyx_tp_traverse_5MACS2_2IO_10ScoreTrack_scoreTrackII(PyObject *o, visitproc v, void *a) {
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33164 }
33165 return 0;
33166 }
33167
__pyx_tp_clear_5MACS2_2IO_10ScoreTrack_scoreTrackII(PyObject * o)33168 static int __pyx_tp_clear_5MACS2_2IO_10ScoreTrack_scoreTrackII(PyObject *o) {
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33190 }
33191
33192 static PyMethodDef __pyx_methods_5MACS2_2IO_10ScoreTrack_scoreTrackII[] = {
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33194 {"enable_trackline", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_5enable_trackline, METH_NOARGS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_4enable_trackline},
33195 {"add_chromosome", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_7add_chromosome, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_6add_chromosome},
33196 {"add", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_9add, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_8add},
33197 {"finalize", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_11finalize, METH_NOARGS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_10finalize},
33198 {"get_data_by_chr", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_13get_data_by_chr, METH_O, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_12get_data_by_chr},
33199 {"get_chr_names", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_15get_chr_names, METH_NOARGS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_14get_chr_names},
33200 {"change_normalization_method", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_17change_normalization_method, METH_O, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_16change_normalization_method},
33201 {"change_score_method", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_19change_score_method, METH_O, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_18change_score_method},
33202 {"make_pq_table", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_21make_pq_table, METH_NOARGS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_20make_pq_table},
33203 {"write_bedGraph", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_23write_bedGraph, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_22write_bedGraph},
33204 {"call_peaks", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_25call_peaks, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_24call_peaks},
33205 {"call_broadpeaks", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_27call_broadpeaks, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_26call_broadpeaks},
33206 {"__add_broadpeak", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_29__add_broadpeak, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII_28__add_broadpeak},
33207 {"__reduce_cython__", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_31__reduce_cython__, METH_NOARGS, 0},
33208 {"__setstate_cython__", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_33__setstate_cython__, METH_O, 0},
33209 {0, 0, 0, 0}
33210 };
33211
33212 static PyTypeObject __pyx_type_5MACS2_2IO_10ScoreTrack_scoreTrackII = {
33213 PyVarObject_HEAD_INIT(0, 0)
33214 "MACS2.IO.ScoreTrack.scoreTrackII", /*tp_name*/
33215 sizeof(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII), /*tp_basicsize*/
33216 0, /*tp_itemsize*/
33217 __pyx_tp_dealloc_5MACS2_2IO_10ScoreTrack_scoreTrackII, /*tp_dealloc*/
33218 #if PY_VERSION_HEX < 0x030800b4
33219 0, /*tp_print*/
33220 #endif
33221 #if PY_VERSION_HEX >= 0x030800b4
33222 0, /*tp_vectorcall_offset*/
33223 #endif
33224 0, /*tp_getattr*/
33225 0, /*tp_setattr*/
33226 #if PY_MAJOR_VERSION < 3
33227 0, /*tp_compare*/
33228 #endif
33229 #if PY_MAJOR_VERSION >= 3
33230 0, /*tp_as_async*/
33231 #endif
33232 0, /*tp_repr*/
33233 0, /*tp_as_number*/
33234 0, /*tp_as_sequence*/
33235 0, /*tp_as_mapping*/
33236 0, /*tp_hash*/
33237 0, /*tp_call*/
33238 0, /*tp_str*/
33239 0, /*tp_getattro*/
33240 0, /*tp_setattro*/
33241 0, /*tp_as_buffer*/
33242 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
33243 "Class for scoreGraph type data. Modified from scoreTrackI. The\n difference is that we store a single score data, not\n p/q/loglikelihood altogether. Score (the 4th) column is calculated\n through calling change_method() function. Individual scores for\n filling PeakIO object are calculated by prepare_peakIO_scores()\n function.\n\n I want to save mem and simplify calculation in this new class.\n\n ", /*tp_doc*/
33244 __pyx_tp_traverse_5MACS2_2IO_10ScoreTrack_scoreTrackII, /*tp_traverse*/
33245 __pyx_tp_clear_5MACS2_2IO_10ScoreTrack_scoreTrackII, /*tp_clear*/
33246 0, /*tp_richcompare*/
33247 0, /*tp_weaklistoffset*/
33248 0, /*tp_iter*/
33249 0, /*tp_iternext*/
33250 __pyx_methods_5MACS2_2IO_10ScoreTrack_scoreTrackII, /*tp_methods*/
33251 0, /*tp_members*/
33252 0, /*tp_getset*/
33253 0, /*tp_base*/
33254 0, /*tp_dict*/
33255 0, /*tp_descr_get*/
33256 0, /*tp_descr_set*/
33257 0, /*tp_dictoffset*/
33258 __pyx_pw_5MACS2_2IO_10ScoreTrack_12scoreTrackII_1__init__, /*tp_init*/
33259 0, /*tp_alloc*/
33260 __pyx_tp_new_5MACS2_2IO_10ScoreTrack_scoreTrackII, /*tp_new*/
33261 0, /*tp_free*/
33262 0, /*tp_is_gc*/
33263 0, /*tp_bases*/
33264 0, /*tp_mro*/
33265 0, /*tp_cache*/
33266 0, /*tp_subclasses*/
33267 0, /*tp_weaklist*/
33268 0, /*tp_del*/
33269 0, /*tp_version_tag*/
33270 #if PY_VERSION_HEX >= 0x030400a1
33271 0, /*tp_finalize*/
33272 #endif
33273 #if PY_VERSION_HEX >= 0x030800b1
33274 0, /*tp_vectorcall*/
33275 #endif
33276 #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
33277 0, /*tp_print*/
33278 #endif
33279 };
33280 static struct __pyx_vtabstruct_5MACS2_2IO_10ScoreTrack_TwoConditionScores __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores;
33281
__pyx_tp_new_5MACS2_2IO_10ScoreTrack_TwoConditionScores(PyTypeObject * t,CYTHON_UNUSED PyObject * a,CYTHON_UNUSED PyObject * k)33282 static PyObject *__pyx_tp_new_5MACS2_2IO_10ScoreTrack_TwoConditionScores(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
33283 struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *p;
33284 PyObject *o;
33285 if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
33286 o = (*t->tp_alloc)(t, 0);
33287 } else {
33288 o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
33289 }
33290 if (unlikely(!o)) return 0;
33291 p = ((struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *)o);
33292 p->__pyx_vtab = __pyx_vtabptr_5MACS2_2IO_10ScoreTrack_TwoConditionScores;
33293 p->data = ((PyObject*)Py_None); Py_INCREF(Py_None);
33294 p->datalength = ((PyObject*)Py_None); Py_INCREF(Py_None);
33295 p->t1bdg = Py_None; Py_INCREF(Py_None);
33296 p->c1bdg = Py_None; Py_INCREF(Py_None);
33297 p->t2bdg = Py_None; Py_INCREF(Py_None);
33298 p->c2bdg = Py_None; Py_INCREF(Py_None);
33299 p->pvalue_stat1 = ((PyObject*)Py_None); Py_INCREF(Py_None);
33300 p->pvalue_stat2 = ((PyObject*)Py_None); Py_INCREF(Py_None);
33301 p->pvalue_stat3 = ((PyObject*)Py_None); Py_INCREF(Py_None);
33302 return o;
33303 }
33304
__pyx_tp_dealloc_5MACS2_2IO_10ScoreTrack_TwoConditionScores(PyObject * o)33305 static void __pyx_tp_dealloc_5MACS2_2IO_10ScoreTrack_TwoConditionScores(PyObject *o) {
33306 struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *p = (struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *)o;
33307 #if CYTHON_USE_TP_FINALIZE
33308 if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
33309 if (PyObject_CallFinalizerFromDealloc(o)) return;
33310 }
33311 #endif
33312 PyObject_GC_UnTrack(o);
33313 Py_CLEAR(p->data);
33314 Py_CLEAR(p->datalength);
33315 Py_CLEAR(p->t1bdg);
33316 Py_CLEAR(p->c1bdg);
33317 Py_CLEAR(p->t2bdg);
33318 Py_CLEAR(p->c2bdg);
33319 Py_CLEAR(p->pvalue_stat1);
33320 Py_CLEAR(p->pvalue_stat2);
33321 Py_CLEAR(p->pvalue_stat3);
33322 (*Py_TYPE(o)->tp_free)(o);
33323 }
33324
__pyx_tp_traverse_5MACS2_2IO_10ScoreTrack_TwoConditionScores(PyObject * o,visitproc v,void * a)33325 static int __pyx_tp_traverse_5MACS2_2IO_10ScoreTrack_TwoConditionScores(PyObject *o, visitproc v, void *a) {
33326 int e;
33327 struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *p = (struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *)o;
33328 if (p->data) {
33329 e = (*v)(p->data, a); if (e) return e;
33330 }
33331 if (p->datalength) {
33332 e = (*v)(p->datalength, a); if (e) return e;
33333 }
33334 if (p->t1bdg) {
33335 e = (*v)(p->t1bdg, a); if (e) return e;
33336 }
33337 if (p->c1bdg) {
33338 e = (*v)(p->c1bdg, a); if (e) return e;
33339 }
33340 if (p->t2bdg) {
33341 e = (*v)(p->t2bdg, a); if (e) return e;
33342 }
33343 if (p->c2bdg) {
33344 e = (*v)(p->c2bdg, a); if (e) return e;
33345 }
33346 if (p->pvalue_stat1) {
33347 e = (*v)(p->pvalue_stat1, a); if (e) return e;
33348 }
33349 if (p->pvalue_stat2) {
33350 e = (*v)(p->pvalue_stat2, a); if (e) return e;
33351 }
33352 if (p->pvalue_stat3) {
33353 e = (*v)(p->pvalue_stat3, a); if (e) return e;
33354 }
33355 return 0;
33356 }
33357
__pyx_tp_clear_5MACS2_2IO_10ScoreTrack_TwoConditionScores(PyObject * o)33358 static int __pyx_tp_clear_5MACS2_2IO_10ScoreTrack_TwoConditionScores(PyObject *o) {
33359 PyObject* tmp;
33360 struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *p = (struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *)o;
33361 tmp = ((PyObject*)p->data);
33362 p->data = ((PyObject*)Py_None); Py_INCREF(Py_None);
33363 Py_XDECREF(tmp);
33364 tmp = ((PyObject*)p->datalength);
33365 p->datalength = ((PyObject*)Py_None); Py_INCREF(Py_None);
33366 Py_XDECREF(tmp);
33367 tmp = ((PyObject*)p->t1bdg);
33368 p->t1bdg = Py_None; Py_INCREF(Py_None);
33369 Py_XDECREF(tmp);
33370 tmp = ((PyObject*)p->c1bdg);
33371 p->c1bdg = Py_None; Py_INCREF(Py_None);
33372 Py_XDECREF(tmp);
33373 tmp = ((PyObject*)p->t2bdg);
33374 p->t2bdg = Py_None; Py_INCREF(Py_None);
33375 Py_XDECREF(tmp);
33376 tmp = ((PyObject*)p->c2bdg);
33377 p->c2bdg = Py_None; Py_INCREF(Py_None);
33378 Py_XDECREF(tmp);
33379 tmp = ((PyObject*)p->pvalue_stat1);
33380 p->pvalue_stat1 = ((PyObject*)Py_None); Py_INCREF(Py_None);
33381 Py_XDECREF(tmp);
33382 tmp = ((PyObject*)p->pvalue_stat2);
33383 p->pvalue_stat2 = ((PyObject*)Py_None); Py_INCREF(Py_None);
33384 Py_XDECREF(tmp);
33385 tmp = ((PyObject*)p->pvalue_stat3);
33386 p->pvalue_stat3 = ((PyObject*)Py_None); Py_INCREF(Py_None);
33387 Py_XDECREF(tmp);
33388 return 0;
33389 }
33390
33391 static PyMethodDef __pyx_methods_5MACS2_2IO_10ScoreTrack_TwoConditionScores[] = {
33392 {"set_pseudocount", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_3set_pseudocount, METH_O, 0},
33393 {"build", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_5build, METH_NOARGS, __pyx_doc_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_4build},
33394 {"get_common_chrs", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_7get_common_chrs, METH_NOARGS, 0},
33395 {"finalize", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_9finalize, METH_NOARGS, __pyx_doc_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_8finalize},
33396 {"get_data_by_chr", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_11get_data_by_chr, METH_O, __pyx_doc_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_10get_data_by_chr},
33397 {"get_chr_names", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_13get_chr_names, METH_NOARGS, __pyx_doc_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_12get_chr_names},
33398 {"write_bedGraph", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_15write_bedGraph, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_14write_bedGraph},
33399 {"write_matrix", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_17write_matrix, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_16write_matrix},
33400 {"call_peaks", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_19call_peaks, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_18call_peaks},
33401 {"__reduce_cython__", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_21__reduce_cython__, METH_NOARGS, 0},
33402 {"__setstate_cython__", (PyCFunction)__pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_23__setstate_cython__, METH_O, 0},
33403 {0, 0, 0, 0}
33404 };
33405
33406 static PyTypeObject __pyx_type_5MACS2_2IO_10ScoreTrack_TwoConditionScores = {
33407 PyVarObject_HEAD_INIT(0, 0)
33408 "MACS2.IO.ScoreTrack.TwoConditionScores", /*tp_name*/
33409 sizeof(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores), /*tp_basicsize*/
33410 0, /*tp_itemsize*/
33411 __pyx_tp_dealloc_5MACS2_2IO_10ScoreTrack_TwoConditionScores, /*tp_dealloc*/
33412 #if PY_VERSION_HEX < 0x030800b4
33413 0, /*tp_print*/
33414 #endif
33415 #if PY_VERSION_HEX >= 0x030800b4
33416 0, /*tp_vectorcall_offset*/
33417 #endif
33418 0, /*tp_getattr*/
33419 0, /*tp_setattr*/
33420 #if PY_MAJOR_VERSION < 3
33421 0, /*tp_compare*/
33422 #endif
33423 #if PY_MAJOR_VERSION >= 3
33424 0, /*tp_as_async*/
33425 #endif
33426 0, /*tp_repr*/
33427 0, /*tp_as_number*/
33428 0, /*tp_as_sequence*/
33429 0, /*tp_as_mapping*/
33430 0, /*tp_hash*/
33431 0, /*tp_call*/
33432 0, /*tp_str*/
33433 0, /*tp_getattro*/
33434 0, /*tp_setattro*/
33435 0, /*tp_as_buffer*/
33436 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
33437 "Class for saving two condition comparison scores.\n ", /*tp_doc*/
33438 __pyx_tp_traverse_5MACS2_2IO_10ScoreTrack_TwoConditionScores, /*tp_traverse*/
33439 __pyx_tp_clear_5MACS2_2IO_10ScoreTrack_TwoConditionScores, /*tp_clear*/
33440 0, /*tp_richcompare*/
33441 0, /*tp_weaklistoffset*/
33442 0, /*tp_iter*/
33443 0, /*tp_iternext*/
33444 __pyx_methods_5MACS2_2IO_10ScoreTrack_TwoConditionScores, /*tp_methods*/
33445 0, /*tp_members*/
33446 0, /*tp_getset*/
33447 0, /*tp_base*/
33448 0, /*tp_dict*/
33449 0, /*tp_descr_get*/
33450 0, /*tp_descr_set*/
33451 0, /*tp_dictoffset*/
33452 __pyx_pw_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_1__init__, /*tp_init*/
33453 0, /*tp_alloc*/
33454 __pyx_tp_new_5MACS2_2IO_10ScoreTrack_TwoConditionScores, /*tp_new*/
33455 0, /*tp_free*/
33456 0, /*tp_is_gc*/
33457 0, /*tp_bases*/
33458 0, /*tp_mro*/
33459 0, /*tp_cache*/
33460 0, /*tp_subclasses*/
33461 0, /*tp_weaklist*/
33462 0, /*tp_del*/
33463 0, /*tp_version_tag*/
33464 #if PY_VERSION_HEX >= 0x030400a1
33465 0, /*tp_finalize*/
33466 #endif
33467 #if PY_VERSION_HEX >= 0x030800b1
33468 0, /*tp_vectorcall*/
33469 #endif
33470 #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
33471 0, /*tp_print*/
33472 #endif
33473 };
33474
33475 static PyMethodDef __pyx_methods[] = {
33476 {0, 0, 0, 0}
33477 };
33478
33479 #if PY_MAJOR_VERSION >= 3
33480 #if CYTHON_PEP489_MULTI_PHASE_INIT
33481 static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/
33482 static int __pyx_pymod_exec_ScoreTrack(PyObject* module); /*proto*/
33483 static PyModuleDef_Slot __pyx_moduledef_slots[] = {
33484 {Py_mod_create, (void*)__pyx_pymod_create},
33485 {Py_mod_exec, (void*)__pyx_pymod_exec_ScoreTrack},
33486 {0, NULL}
33487 };
33488 #endif
33489
33490 static struct PyModuleDef __pyx_moduledef = {
33491 PyModuleDef_HEAD_INIT,
33492 "ScoreTrack",
33493 __pyx_k_Module_for_Feature_IO_classes_Th, /* m_doc */
33494 #if CYTHON_PEP489_MULTI_PHASE_INIT
33495 0, /* m_size */
33496 #else
33497 -1, /* m_size */
33498 #endif
33499 __pyx_methods /* m_methods */,
33500 #if CYTHON_PEP489_MULTI_PHASE_INIT
33501 __pyx_moduledef_slots, /* m_slots */
33502 #else
33503 NULL, /* m_reload */
33504 #endif
33505 NULL, /* m_traverse */
33506 NULL, /* m_clear */
33507 NULL /* m_free */
33508 };
33509 #endif
33510 #ifndef CYTHON_SMALL_CODE
33511 #if defined(__clang__)
33512 #define CYTHON_SMALL_CODE
33513 #elif defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3))
33514 #define CYTHON_SMALL_CODE __attribute__((cold))
33515 #else
33516 #define CYTHON_SMALL_CODE
33517 #endif
33518 #endif
33519
33520 static __Pyx_StringTabEntry __pyx_string_tab[] = {
33521 {&__pyx_kp_b_0, __pyx_k_0, sizeof(__pyx_k_0), 0, 0, 0, 0},
33522 {&__pyx_kp_b_0_d, __pyx_k_0_d, sizeof(__pyx_k_0_d), 0, 0, 0, 0},
33523 {&__pyx_kp_b_1, __pyx_k_1, sizeof(__pyx_k_1), 0, 0, 0, 0},
33524 {&__pyx_kp_b_1_1, __pyx_k_1_1, sizeof(__pyx_k_1_1), 0, 0, 0, 0},
33525 {&__pyx_kp_b_1_2, __pyx_k_1_2, sizeof(__pyx_k_1_2), 0, 0, 0, 0},
33526 {&__pyx_kp_u_5f, __pyx_k_5f, sizeof(__pyx_k_5f), 0, 1, 0, 0},
33527 {&__pyx_n_s_BYTE4, __pyx_k_BYTE4, sizeof(__pyx_k_BYTE4), 0, 0, 1, 1},
33528 {&__pyx_n_s_BroadPeakIO, __pyx_k_BroadPeakIO, sizeof(__pyx_k_BroadPeakIO), 0, 0, 1, 1},
33529 {&__pyx_n_s_CombinedTwoTrack, __pyx_k_CombinedTwoTrack, sizeof(__pyx_k_CombinedTwoTrack), 0, 0, 1, 1},
33530 {&__pyx_n_s_CombinedTwoTrack___init, __pyx_k_CombinedTwoTrack___init, sizeof(__pyx_k_CombinedTwoTrack___init), 0, 0, 1, 1},
33531 {&__pyx_n_s_CombinedTwoTrack_add, __pyx_k_CombinedTwoTrack_add, sizeof(__pyx_k_CombinedTwoTrack_add), 0, 0, 1, 1},
33532 {&__pyx_n_s_CombinedTwoTrack_add_chromosome, __pyx_k_CombinedTwoTrack_add_chromosome, sizeof(__pyx_k_CombinedTwoTrack_add_chromosome), 0, 0, 1, 1},
33533 {&__pyx_n_s_CombinedTwoTrack_extract_average, __pyx_k_CombinedTwoTrack_extract_average, sizeof(__pyx_k_CombinedTwoTrack_extract_average), 0, 0, 1, 1},
33534 {&__pyx_n_s_CombinedTwoTrack_extract_sum, __pyx_k_CombinedTwoTrack_extract_sum, sizeof(__pyx_k_CombinedTwoTrack_extract_sum), 0, 0, 1, 1},
33535 {&__pyx_n_s_CombinedTwoTrack_extract_value, __pyx_k_CombinedTwoTrack_extract_value, sizeof(__pyx_k_CombinedTwoTrack_extract_value), 0, 0, 1, 1},
33536 {&__pyx_n_s_CombinedTwoTrack_finalize, __pyx_k_CombinedTwoTrack_finalize, sizeof(__pyx_k_CombinedTwoTrack_finalize), 0, 0, 1, 1},
33537 {&__pyx_n_s_CombinedTwoTrack_get_chr_names, __pyx_k_CombinedTwoTrack_get_chr_names, sizeof(__pyx_k_CombinedTwoTrack_get_chr_names), 0, 0, 1, 1},
33538 {&__pyx_n_s_CombinedTwoTrack_get_data_by_chr, __pyx_k_CombinedTwoTrack_get_data_by_chr, sizeof(__pyx_k_CombinedTwoTrack_get_data_by_chr), 0, 0, 1, 1},
33539 {&__pyx_n_s_CombinedTwoTrack_total, __pyx_k_CombinedTwoTrack_total, sizeof(__pyx_k_CombinedTwoTrack_total), 0, 0, 1, 1},
33540 {&__pyx_n_s_CombinedTwoTrack_write_bedGraph, __pyx_k_CombinedTwoTrack_write_bedGraph, sizeof(__pyx_k_CombinedTwoTrack_write_bedGraph), 0, 0, 1, 1},
33541 {&__pyx_n_s_FBYTE4, __pyx_k_FBYTE4, sizeof(__pyx_k_FBYTE4), 0, 0, 1, 1},
33542 {&__pyx_kp_s_For_differential_peak_calling, __pyx_k_For_differential_peak_calling, sizeof(__pyx_k_For_differential_peak_calling), 0, 0, 1, 0},
33543 {&__pyx_kp_u_Format_string_allocated_too_shor, __pyx_k_Format_string_allocated_too_shor, sizeof(__pyx_k_Format_string_allocated_too_shor), 0, 1, 0, 0},
33544 {&__pyx_kp_u_Format_string_allocated_too_shor_2, __pyx_k_Format_string_allocated_too_shor_2, sizeof(__pyx_k_Format_string_allocated_too_shor_2), 0, 1, 0, 0},
33545 {&__pyx_n_s_ImportError, __pyx_k_ImportError, sizeof(__pyx_k_ImportError), 0, 0, 1, 1},
33546 {&__pyx_kp_s_Incompatible_checksums_s_vs_0x77, __pyx_k_Incompatible_checksums_s_vs_0x77, sizeof(__pyx_k_Incompatible_checksums_s_vs_0x77), 0, 0, 1, 0},
33547 {&__pyx_kp_s_Incompatible_checksums_s_vs_0x84, __pyx_k_Incompatible_checksums_s_vs_0x84, sizeof(__pyx_k_Incompatible_checksums_s_vs_0x84), 0, 0, 1, 0},
33548 {&__pyx_n_s_KeyError, __pyx_k_KeyError, sizeof(__pyx_k_KeyError), 0, 0, 1, 1},
33549 {&__pyx_n_s_LOG10_E, __pyx_k_LOG10_E, sizeof(__pyx_k_LOG10_E), 0, 0, 1, 1},
33550 {&__pyx_n_s_MACS2_Constants, __pyx_k_MACS2_Constants, sizeof(__pyx_k_MACS2_Constants), 0, 0, 1, 1},
33551 {&__pyx_n_s_MACS2_IO_PeakIO, __pyx_k_MACS2_IO_PeakIO, sizeof(__pyx_k_MACS2_IO_PeakIO), 0, 0, 1, 1},
33552 {&__pyx_n_s_MACS2_IO_ScoreTrack, __pyx_k_MACS2_IO_ScoreTrack, sizeof(__pyx_k_MACS2_IO_ScoreTrack), 0, 0, 1, 1},
33553 {&__pyx_kp_s_MACS2_IO_ScoreTrack_pyx, __pyx_k_MACS2_IO_ScoreTrack_pyx, sizeof(__pyx_k_MACS2_IO_ScoreTrack_pyx), 0, 0, 1, 0},
33554 {&__pyx_n_s_MACS2_Prob, __pyx_k_MACS2_Prob, sizeof(__pyx_k_MACS2_Prob), 0, 0, 1, 1},
33555 {&__pyx_n_s_MACS2_Signal, __pyx_k_MACS2_Signal, sizeof(__pyx_k_MACS2_Signal), 0, 0, 1, 1},
33556 {&__pyx_kp_u_Non_native_byte_order_not_suppor, __pyx_k_Non_native_byte_order_not_suppor, sizeof(__pyx_k_Non_native_byte_order_not_suppor), 0, 1, 0, 0},
33557 {&__pyx_kp_u_None, __pyx_k_None, sizeof(__pyx_k_None), 0, 1, 0, 0},
33558 {&__pyx_n_s_NotImplemented, __pyx_k_NotImplemented, sizeof(__pyx_k_NotImplemented), 0, 0, 1, 1},
33559 {&__pyx_n_s_PeakIO, __pyx_k_PeakIO, sizeof(__pyx_k_PeakIO), 0, 0, 1, 1},
33560 {&__pyx_n_s_PickleError, __pyx_k_PickleError, sizeof(__pyx_k_PickleError), 0, 0, 1, 1},
33561 {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1},
33562 {&__pyx_n_s_StopIteration, __pyx_k_StopIteration, sizeof(__pyx_k_StopIteration), 0, 0, 1, 1},
33563 {&__pyx_kp_u_Tao_Liu_vladimir_liu_gmail_com, __pyx_k_Tao_Liu_vladimir_liu_gmail_com, sizeof(__pyx_k_Tao_Liu_vladimir_liu_gmail_com), 0, 1, 0, 0},
33564 {&__pyx_n_s_TwoConditionScores, __pyx_k_TwoConditionScores, sizeof(__pyx_k_TwoConditionScores), 0, 0, 1, 1},
33565 {&__pyx_n_s_V1, __pyx_k_V1, sizeof(__pyx_k_V1), 0, 0, 1, 1},
33566 {&__pyx_n_u_V1, __pyx_k_V1, sizeof(__pyx_k_V1), 0, 1, 0, 1},
33567 {&__pyx_n_s_V2, __pyx_k_V2, sizeof(__pyx_k_V2), 0, 0, 1, 1},
33568 {&__pyx_n_u_V2, __pyx_k_V2, sizeof(__pyx_k_V2), 0, 1, 0, 1},
33569 {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1},
33570 {&__pyx_kp_u__11, __pyx_k__11, sizeof(__pyx_k__11), 0, 1, 0, 0},
33571 {&__pyx_kp_u__12, __pyx_k__12, sizeof(__pyx_k__12), 0, 1, 0, 0},
33572 {&__pyx_kp_b__16, __pyx_k__16, sizeof(__pyx_k__16), 0, 0, 0, 0},
33573 {&__pyx_kp_u__19, __pyx_k__19, sizeof(__pyx_k__19), 0, 1, 0, 0},
33574 {&__pyx_kp_b__20, __pyx_k__20, sizeof(__pyx_k__20), 0, 0, 0, 0},
33575 {&__pyx_kp_u__21, __pyx_k__21, sizeof(__pyx_k__21), 0, 1, 0, 0},
33576 {&__pyx_n_u__22, __pyx_k__22, sizeof(__pyx_k__22), 0, 1, 0, 1},
33577 {&__pyx_n_s_add, __pyx_k_add, sizeof(__pyx_k_add), 0, 0, 1, 1},
33578 {&__pyx_n_s_add_broadpeak, __pyx_k_add_broadpeak, sizeof(__pyx_k_add_broadpeak), 0, 0, 1, 1},
33579 {&__pyx_n_s_add_chromosome, __pyx_k_add_chromosome, sizeof(__pyx_k_add_chromosome), 0, 0, 1, 1},
33580 {&__pyx_n_s_all, __pyx_k_all, sizeof(__pyx_k_all), 0, 0, 1, 1},
33581 {&__pyx_n_s_append, __pyx_k_append, sizeof(__pyx_k_append), 0, 0, 1, 1},
33582 {&__pyx_n_s_array, __pyx_k_array, sizeof(__pyx_k_array), 0, 0, 1, 1},
33583 {&__pyx_n_s_asym_logLR_dict, __pyx_k_asym_logLR_dict, sizeof(__pyx_k_asym_logLR_dict), 0, 0, 1, 1},
33584 {&__pyx_n_s_author, __pyx_k_author, sizeof(__pyx_k_author), 0, 0, 1, 1},
33585 {&__pyx_n_s_bdgTrack2, __pyx_k_bdgTrack2, sizeof(__pyx_k_bdgTrack2), 0, 0, 1, 1},
33586 {&__pyx_n_s_blockNum, __pyx_k_blockNum, sizeof(__pyx_k_blockNum), 0, 0, 1, 1},
33587 {&__pyx_n_s_blockSizes, __pyx_k_blockSizes, sizeof(__pyx_k_blockSizes), 0, 0, 1, 1},
33588 {&__pyx_n_s_blockStarts, __pyx_k_blockStarts, sizeof(__pyx_k_blockStarts), 0, 0, 1, 1},
33589 {&__pyx_n_s_bpeaks, __pyx_k_bpeaks, sizeof(__pyx_k_bpeaks), 0, 0, 1, 1},
33590 {&__pyx_n_s_build, __pyx_k_build, sizeof(__pyx_k_build), 0, 0, 1, 1},
33591 {&__pyx_n_s_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 0, 1, 1},
33592 {&__pyx_n_s_c1bdg, __pyx_k_c1bdg, sizeof(__pyx_k_c1bdg), 0, 0, 1, 1},
33593 {&__pyx_n_s_c2bdg, __pyx_k_c2bdg, sizeof(__pyx_k_c2bdg), 0, 0, 1, 1},
33594 {&__pyx_n_s_call_broadpeaks, __pyx_k_call_broadpeaks, sizeof(__pyx_k_call_broadpeaks), 0, 0, 1, 1},
33595 {&__pyx_n_s_call_peaks, __pyx_k_call_peaks, sizeof(__pyx_k_call_peaks), 0, 0, 1, 1},
33596 {&__pyx_n_s_call_summits, __pyx_k_call_summits, sizeof(__pyx_k_call_summits), 0, 0, 1, 1},
33597 {&__pyx_n_s_change_normalization_method, __pyx_k_change_normalization_method, sizeof(__pyx_k_change_normalization_method), 0, 0, 1, 1},
33598 {&__pyx_n_s_change_score_method, __pyx_k_change_score_method, sizeof(__pyx_k_change_score_method), 0, 0, 1, 1},
33599 {&__pyx_n_s_chip, __pyx_k_chip, sizeof(__pyx_k_chip), 0, 0, 1, 1},
33600 {&__pyx_n_s_chr1, __pyx_k_chr1, sizeof(__pyx_k_chr1), 0, 0, 1, 1},
33601 {&__pyx_n_s_chr2, __pyx_k_chr2, sizeof(__pyx_k_chr2), 0, 0, 1, 1},
33602 {&__pyx_n_s_chrom, __pyx_k_chrom, sizeof(__pyx_k_chrom), 0, 0, 1, 1},
33603 {&__pyx_n_s_chrom_data, __pyx_k_chrom_data, sizeof(__pyx_k_chrom_data), 0, 0, 1, 1},
33604 {&__pyx_n_s_chrom_max_len, __pyx_k_chrom_max_len, sizeof(__pyx_k_chrom_max_len), 0, 0, 1, 1},
33605 {&__pyx_n_s_chromosome, __pyx_k_chromosome, sizeof(__pyx_k_chromosome), 0, 0, 1, 1},
33606 {&__pyx_n_s_chrs, __pyx_k_chrs, sizeof(__pyx_k_chrs), 0, 0, 1, 1},
33607 {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1},
33608 {&__pyx_n_s_colname, __pyx_k_colname, sizeof(__pyx_k_colname), 0, 0, 1, 1},
33609 {&__pyx_n_s_column, __pyx_k_column, sizeof(__pyx_k_column), 0, 0, 1, 1},
33610 {&__pyx_kp_u_column_should_be_between_1_2_or, __pyx_k_column_should_be_between_1_2_or, sizeof(__pyx_k_column_should_be_between_1_2_or), 0, 1, 0, 0},
33611 {&__pyx_n_s_common_chr, __pyx_k_common_chr, sizeof(__pyx_k_common_chr), 0, 0, 1, 1},
33612 {&__pyx_n_s_cond1_factor, __pyx_k_cond1_factor, sizeof(__pyx_k_cond1_factor), 0, 0, 1, 1},
33613 {&__pyx_n_s_cond2_factor, __pyx_k_cond2_factor, sizeof(__pyx_k_cond2_factor), 0, 0, 1, 1},
33614 {&__pyx_n_s_control, __pyx_k_control, sizeof(__pyx_k_control), 0, 0, 1, 1},
33615 {&__pyx_n_s_copy, __pyx_k_copy, sizeof(__pyx_k_copy), 0, 0, 1, 1},
33616 {&__pyx_n_s_ctrl_depth, __pyx_k_ctrl_depth, sizeof(__pyx_k_ctrl_depth), 0, 0, 1, 1},
33617 {&__pyx_n_s_cur_region, __pyx_k_cur_region, sizeof(__pyx_k_cur_region), 0, 0, 1, 1},
33618 {&__pyx_n_s_cutoff, __pyx_k_cutoff, sizeof(__pyx_k_cutoff), 0, 0, 1, 1},
33619 {&__pyx_n_s_d, __pyx_k_d, sizeof(__pyx_k_d), 0, 0, 1, 1},
33620 {&__pyx_n_u_d, __pyx_k_d, sizeof(__pyx_k_d), 0, 1, 0, 1},
33621 {&__pyx_kp_b_d_2, __pyx_k_d_2, sizeof(__pyx_k_d_2), 0, 0, 0, 0},
33622 {&__pyx_n_s_data, __pyx_k_data, sizeof(__pyx_k_data), 0, 0, 1, 1},
33623 {&__pyx_n_s_decode, __pyx_k_decode, sizeof(__pyx_k_decode), 0, 0, 1, 1},
33624 {&__pyx_n_s_description, __pyx_k_description, sizeof(__pyx_k_description), 0, 0, 1, 1},
33625 {&__pyx_kp_u_description_2, __pyx_k_description_2, sizeof(__pyx_k_description_2), 0, 1, 0, 0},
33626 {&__pyx_n_s_dict, __pyx_k_dict, sizeof(__pyx_k_dict), 0, 0, 1, 1},
33627 {&__pyx_n_s_doc, __pyx_k_doc, sizeof(__pyx_k_doc), 0, 0, 1, 1},
33628 {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1},
33629 {&__pyx_n_s_enable_trackline, __pyx_k_enable_trackline, sizeof(__pyx_k_enable_trackline), 0, 0, 1, 1},
33630 {&__pyx_n_s_end, __pyx_k_end, sizeof(__pyx_k_end), 0, 0, 1, 1},
33631 {&__pyx_n_u_end, __pyx_k_end, sizeof(__pyx_k_end), 0, 1, 0, 1},
33632 {&__pyx_n_s_endpos, __pyx_k_endpos, sizeof(__pyx_k_endpos), 0, 0, 1, 1},
33633 {&__pyx_n_s_enforce_peakyness, __pyx_k_enforce_peakyness, sizeof(__pyx_k_enforce_peakyness), 0, 0, 1, 1},
33634 {&__pyx_n_s_enforce_valleys, __pyx_k_enforce_valleys, sizeof(__pyx_k_enforce_valleys), 0, 0, 1, 1},
33635 {&__pyx_n_s_extract_average, __pyx_k_extract_average, sizeof(__pyx_k_extract_average), 0, 0, 1, 1},
33636 {&__pyx_n_s_extract_sum, __pyx_k_extract_sum, sizeof(__pyx_k_extract_sum), 0, 0, 1, 1},
33637 {&__pyx_n_s_extract_value, __pyx_k_extract_value, sizeof(__pyx_k_extract_value), 0, 0, 1, 1},
33638 {&__pyx_n_u_fc, __pyx_k_fc, sizeof(__pyx_k_fc), 0, 1, 0, 1},
33639 {&__pyx_n_s_fhd, __pyx_k_fhd, sizeof(__pyx_k_fhd), 0, 0, 1, 1},
33640 {&__pyx_n_s_finalize, __pyx_k_finalize, sizeof(__pyx_k_finalize), 0, 0, 1, 1},
33641 {&__pyx_n_s_flat, __pyx_k_flat, sizeof(__pyx_k_flat), 0, 0, 1, 1},
33642 {&__pyx_n_u_float32, __pyx_k_float32, sizeof(__pyx_k_float32), 0, 1, 0, 1},
33643 {&__pyx_n_s_fold_change, __pyx_k_fold_change, sizeof(__pyx_k_fold_change), 0, 0, 1, 1},
33644 {&__pyx_n_s_functools, __pyx_k_functools, sizeof(__pyx_k_functools), 0, 0, 1, 1},
33645 {&__pyx_n_s_get_chr_names, __pyx_k_get_chr_names, sizeof(__pyx_k_get_chr_names), 0, 0, 1, 1},
33646 {&__pyx_n_s_get_common_chrs, __pyx_k_get_common_chrs, sizeof(__pyx_k_get_common_chrs), 0, 0, 1, 1},
33647 {&__pyx_n_s_get_common_chrs_locals_lambda, __pyx_k_get_common_chrs_locals_lambda, sizeof(__pyx_k_get_common_chrs_locals_lambda), 0, 0, 1, 1},
33648 {&__pyx_n_s_get_data_by_chr, __pyx_k_get_data_by_chr, sizeof(__pyx_k_get_data_by_chr), 0, 0, 1, 1},
33649 {&__pyx_n_s_getstate, __pyx_k_getstate, sizeof(__pyx_k_getstate), 0, 0, 1, 1},
33650 {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1},
33651 {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1},
33652 {&__pyx_n_s_init, __pyx_k_init, sizeof(__pyx_k_init), 0, 0, 1, 1},
33653 {&__pyx_n_u_int32, __pyx_k_int32, sizeof(__pyx_k_int32), 0, 1, 0, 1},
33654 {&__pyx_n_s_intersection, __pyx_k_intersection, sizeof(__pyx_k_intersection), 0, 0, 1, 1},
33655 {&__pyx_n_s_join, __pyx_k_join, sizeof(__pyx_k_join), 0, 0, 1, 1},
33656 {&__pyx_n_s_keys, __pyx_k_keys, sizeof(__pyx_k_keys), 0, 0, 1, 1},
33657 {&__pyx_n_s_l, __pyx_k_l, sizeof(__pyx_k_l), 0, 0, 1, 1},
33658 {&__pyx_n_s_ladd, __pyx_k_ladd, sizeof(__pyx_k_ladd), 0, 0, 1, 1},
33659 {&__pyx_n_s_larray, __pyx_k_larray, sizeof(__pyx_k_larray), 0, 0, 1, 1},
33660 {&__pyx_n_u_length, __pyx_k_length, sizeof(__pyx_k_length), 0, 1, 0, 1},
33661 {&__pyx_kp_u_level_1_cutoff_should_be_larger, __pyx_k_level_1_cutoff_should_be_larger, sizeof(__pyx_k_level_1_cutoff_should_be_larger), 0, 1, 0, 0},
33662 {&__pyx_kp_u_level_2_maximum_gap_should_be_la, __pyx_k_level_2_maximum_gap_should_be_la, sizeof(__pyx_k_level_2_maximum_gap_should_be_la), 0, 1, 0, 0},
33663 {&__pyx_n_s_logging, __pyx_k_logging, sizeof(__pyx_k_logging), 0, 0, 1, 1},
33664 {&__pyx_n_s_logical_and, __pyx_k_logical_and, sizeof(__pyx_k_logical_and), 0, 0, 1, 1},
33665 {&__pyx_n_s_lvl1_cutoff, __pyx_k_lvl1_cutoff, sizeof(__pyx_k_lvl1_cutoff), 0, 0, 1, 1},
33666 {&__pyx_n_s_lvl1_max_gap, __pyx_k_lvl1_max_gap, sizeof(__pyx_k_lvl1_max_gap), 0, 0, 1, 1},
33667 {&__pyx_n_s_lvl1peakset, __pyx_k_lvl1peakset, sizeof(__pyx_k_lvl1peakset), 0, 0, 1, 1},
33668 {&__pyx_n_s_lvl2_cutoff, __pyx_k_lvl2_cutoff, sizeof(__pyx_k_lvl2_cutoff), 0, 0, 1, 1},
33669 {&__pyx_n_s_lvl2_max_gap, __pyx_k_lvl2_max_gap, sizeof(__pyx_k_lvl2_max_gap), 0, 0, 1, 1},
33670 {&__pyx_n_s_lvl2peak, __pyx_k_lvl2peak, sizeof(__pyx_k_lvl2peak), 0, 0, 1, 1},
33671 {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1},
33672 {&__pyx_n_s_make_pq_table, __pyx_k_make_pq_table, sizeof(__pyx_k_make_pq_table), 0, 0, 1, 1},
33673 {&__pyx_n_s_max_gap, __pyx_k_max_gap, sizeof(__pyx_k_max_gap), 0, 0, 1, 1},
33674 {&__pyx_n_s_maxima, __pyx_k_maxima, sizeof(__pyx_k_maxima), 0, 0, 1, 1},
33675 {&__pyx_n_s_metaclass, __pyx_k_metaclass, sizeof(__pyx_k_metaclass), 0, 0, 1, 1},
33676 {&__pyx_n_s_min_length, __pyx_k_min_length, sizeof(__pyx_k_min_length), 0, 0, 1, 1},
33677 {&__pyx_n_s_module, __pyx_k_module, sizeof(__pyx_k_module), 0, 0, 1, 1},
33678 {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1},
33679 {&__pyx_n_s_name_2, __pyx_k_name_2, sizeof(__pyx_k_name_2), 0, 0, 1, 1},
33680 {&__pyx_kp_u_ndarray_is_not_C_contiguous, __pyx_k_ndarray_is_not_C_contiguous, sizeof(__pyx_k_ndarray_is_not_C_contiguous), 0, 1, 0, 0},
33681 {&__pyx_kp_u_ndarray_is_not_Fortran_contiguou, __pyx_k_ndarray_is_not_Fortran_contiguou, sizeof(__pyx_k_ndarray_is_not_Fortran_contiguou), 0, 1, 0, 0},
33682 {&__pyx_n_s_new, __pyx_k_new, sizeof(__pyx_k_new), 0, 0, 1, 1},
33683 {&__pyx_n_s_next, __pyx_k_next, sizeof(__pyx_k_next), 0, 0, 1, 1},
33684 {&__pyx_n_s_nonzero, __pyx_k_nonzero, sizeof(__pyx_k_nonzero), 0, 0, 1, 1},
33685 {&__pyx_n_s_np, __pyx_k_np, sizeof(__pyx_k_np), 0, 0, 1, 1},
33686 {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1},
33687 {&__pyx_kp_u_numpy_core_multiarray_failed_to, __pyx_k_numpy_core_multiarray_failed_to, sizeof(__pyx_k_numpy_core_multiarray_failed_to), 0, 1, 0, 0},
33688 {&__pyx_kp_u_numpy_core_umath_failed_to_impor, __pyx_k_numpy_core_umath_failed_to_impor, sizeof(__pyx_k_numpy_core_umath_failed_to_impor), 0, 1, 0, 0},
33689 {&__pyx_n_s_p1, __pyx_k_p1, sizeof(__pyx_k_p1), 0, 0, 1, 1},
33690 {&__pyx_n_s_p1n, __pyx_k_p1n, sizeof(__pyx_k_p1n), 0, 0, 1, 1},
33691 {&__pyx_n_s_p2, __pyx_k_p2, sizeof(__pyx_k_p2), 0, 0, 1, 1},
33692 {&__pyx_n_s_p2n, __pyx_k_p2n, sizeof(__pyx_k_p2n), 0, 0, 1, 1},
33693 {&__pyx_n_s_p2s, __pyx_k_p2s, sizeof(__pyx_k_p2s), 0, 0, 1, 1},
33694 {&__pyx_n_s_parse_peakname, __pyx_k_parse_peakname, sizeof(__pyx_k_parse_peakname), 0, 0, 1, 1},
33695 {&__pyx_n_s_peak_score, __pyx_k_peak_score, sizeof(__pyx_k_peak_score), 0, 0, 1, 1},
33696 {&__pyx_n_s_peaks, __pyx_k_peaks, sizeof(__pyx_k_peaks), 0, 0, 1, 1},
33697 {&__pyx_n_s_pickle, __pyx_k_pickle, sizeof(__pyx_k_pickle), 0, 0, 1, 1},
33698 {&__pyx_n_s_pileup, __pyx_k_pileup, sizeof(__pyx_k_pileup), 0, 0, 1, 1},
33699 {&__pyx_n_u_pileup, __pyx_k_pileup, sizeof(__pyx_k_pileup), 0, 1, 0, 1},
33700 {&__pyx_n_s_pointer, __pyx_k_pointer, sizeof(__pyx_k_pointer), 0, 0, 1, 1},
33701 {&__pyx_n_s_poisson_cdf, __pyx_k_poisson_cdf, sizeof(__pyx_k_poisson_cdf), 0, 0, 1, 1},
33702 {&__pyx_n_s_pos, __pyx_k_pos, sizeof(__pyx_k_pos), 0, 0, 1, 1},
33703 {&__pyx_n_u_pos, __pyx_k_pos, sizeof(__pyx_k_pos), 0, 1, 0, 1},
33704 {&__pyx_n_s_pre, __pyx_k_pre, sizeof(__pyx_k_pre), 0, 0, 1, 1},
33705 {&__pyx_n_s_pre_p, __pyx_k_pre_p, sizeof(__pyx_k_pre_p), 0, 0, 1, 1},
33706 {&__pyx_n_s_prepare, __pyx_k_prepare, sizeof(__pyx_k_prepare), 0, 0, 1, 1},
33707 {&__pyx_n_s_proportion_background_empirical, __pyx_k_proportion_background_empirical, sizeof(__pyx_k_proportion_background_empirical), 0, 0, 1, 1},
33708 {&__pyx_n_s_pscore, __pyx_k_pscore, sizeof(__pyx_k_pscore), 0, 0, 1, 1},
33709 {&__pyx_n_u_pscore, __pyx_k_pscore, sizeof(__pyx_k_pscore), 0, 1, 0, 1},
33710 {&__pyx_n_s_pscore_dict, __pyx_k_pscore_dict, sizeof(__pyx_k_pscore_dict), 0, 0, 1, 1},
33711 {&__pyx_n_s_pseudocount, __pyx_k_pseudocount, sizeof(__pyx_k_pseudocount), 0, 0, 1, 1},
33712 {&__pyx_n_s_pyx_PickleError, __pyx_k_pyx_PickleError, sizeof(__pyx_k_pyx_PickleError), 0, 0, 1, 1},
33713 {&__pyx_n_s_pyx_checksum, __pyx_k_pyx_checksum, sizeof(__pyx_k_pyx_checksum), 0, 0, 1, 1},
33714 {&__pyx_n_s_pyx_result, __pyx_k_pyx_result, sizeof(__pyx_k_pyx_result), 0, 0, 1, 1},
33715 {&__pyx_n_s_pyx_state, __pyx_k_pyx_state, sizeof(__pyx_k_pyx_state), 0, 0, 1, 1},
33716 {&__pyx_n_s_pyx_type, __pyx_k_pyx_type, sizeof(__pyx_k_pyx_type), 0, 0, 1, 1},
33717 {&__pyx_n_s_pyx_unpickle_TwoConditionScore, __pyx_k_pyx_unpickle_TwoConditionScore, sizeof(__pyx_k_pyx_unpickle_TwoConditionScore), 0, 0, 1, 1},
33718 {&__pyx_n_s_pyx_unpickle_scoreTrackII, __pyx_k_pyx_unpickle_scoreTrackII, sizeof(__pyx_k_pyx_unpickle_scoreTrackII), 0, 0, 1, 1},
33719 {&__pyx_n_s_pyx_vtable, __pyx_k_pyx_vtable, sizeof(__pyx_k_pyx_vtable), 0, 0, 1, 1},
33720 {&__pyx_n_s_qscore, __pyx_k_qscore, sizeof(__pyx_k_qscore), 0, 0, 1, 1},
33721 {&__pyx_n_u_qscore, __pyx_k_qscore, sizeof(__pyx_k_qscore), 0, 1, 0, 1},
33722 {&__pyx_n_s_qualname, __pyx_k_qualname, sizeof(__pyx_k_qualname), 0, 0, 1, 1},
33723 {&__pyx_n_s_radd, __pyx_k_radd, sizeof(__pyx_k_radd), 0, 0, 1, 1},
33724 {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1},
33725 {&__pyx_n_s_rarray, __pyx_k_rarray, sizeof(__pyx_k_rarray), 0, 0, 1, 1},
33726 {&__pyx_n_s_reduce, __pyx_k_reduce, sizeof(__pyx_k_reduce), 0, 0, 1, 1},
33727 {&__pyx_n_s_reduce_2, __pyx_k_reduce_2, sizeof(__pyx_k_reduce_2), 0, 0, 1, 1},
33728 {&__pyx_n_s_reduce_cython, __pyx_k_reduce_cython, sizeof(__pyx_k_reduce_cython), 0, 0, 1, 1},
33729 {&__pyx_n_s_reduce_ex, __pyx_k_reduce_ex, sizeof(__pyx_k_reduce_ex), 0, 0, 1, 1},
33730 {&__pyx_n_s_refcheck, __pyx_k_refcheck, sizeof(__pyx_k_refcheck), 0, 0, 1, 1},
33731 {&__pyx_n_s_resize, __pyx_k_resize, sizeof(__pyx_k_resize), 0, 0, 1, 1},
33732 {&__pyx_n_s_ret, __pyx_k_ret, sizeof(__pyx_k_ret), 0, 0, 1, 1},
33733 {&__pyx_n_s_reverse, __pyx_k_reverse, sizeof(__pyx_k_reverse), 0, 0, 1, 1},
33734 {&__pyx_n_u_right, __pyx_k_right, sizeof(__pyx_k_right), 0, 1, 0, 1},
33735 {&__pyx_kp_b_s_d_d, __pyx_k_s_d_d, sizeof(__pyx_k_s_d_d), 0, 0, 0, 0},
33736 {&__pyx_kp_u_s_not_supported, __pyx_k_s_not_supported, sizeof(__pyx_k_s_not_supported), 0, 1, 0, 0},
33737 {&__pyx_n_s_score, __pyx_k_score, sizeof(__pyx_k_score), 0, 0, 1, 1},
33738 {&__pyx_n_u_score, __pyx_k_score, sizeof(__pyx_k_score), 0, 1, 0, 1},
33739 {&__pyx_n_s_scoreTrackII, __pyx_k_scoreTrackII, sizeof(__pyx_k_scoreTrackII), 0, 0, 1, 1},
33740 {&__pyx_kp_u_scoreTrackI_Revision, __pyx_k_scoreTrackI_Revision, sizeof(__pyx_k_scoreTrackI_Revision), 0, 1, 0, 0},
33741 {&__pyx_kp_u_scoreTrack_classes, __pyx_k_scoreTrack_classes, sizeof(__pyx_k_scoreTrack_classes), 0, 1, 0, 0},
33742 {&__pyx_n_s_searchsorted, __pyx_k_searchsorted, sizeof(__pyx_k_searchsorted), 0, 0, 1, 1},
33743 {&__pyx_n_s_self, __pyx_k_self, sizeof(__pyx_k_self), 0, 0, 1, 1},
33744 {&__pyx_n_s_set_pseudocount, __pyx_k_set_pseudocount, sizeof(__pyx_k_set_pseudocount), 0, 0, 1, 1},
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34016
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34036 __pyx_tuple__40 = PyTuple_Pack(25, __pyx_n_s_self, __pyx_n_s_bdgTrack2, __pyx_n_s_chr1, __pyx_n_s_chr2, __pyx_n_s_common_chr, __pyx_n_s_chrom, __pyx_n_s_pre_p, __pyx_n_s_p1, __pyx_n_s_p2, __pyx_n_s_v11, __pyx_n_s_v21, __pyx_n_s_v2, __pyx_n_s_ret, __pyx_n_s_radd, __pyx_n_s_v1add, __pyx_n_s_v2add, __pyx_n_s_ladd, __pyx_n_s_chrom_data, __pyx_n_s_p1n, __pyx_n_s_v11n, __pyx_n_s_v21n, __pyx_n_s_p2s, __pyx_n_s_v2s, __pyx_n_s_p2n, __pyx_n_s_v2n); if (unlikely(!__pyx_tuple__40)) __PYX_ERR(0, 246, __pyx_L1_error)
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34042 * return ret
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34048 __pyx_tuple__41 = PyTuple_Pack(16, __pyx_n_s_self, __pyx_n_s_bdgTrack2, __pyx_n_s_i, __pyx_n_s_l, __pyx_n_s_chrom, __pyx_n_s_start, __pyx_n_s_end, __pyx_n_s_rarray, __pyx_n_s_v1array, __pyx_n_s_v2array, __pyx_n_s_larray, __pyx_n_s_ret, __pyx_n_s_radd, __pyx_n_s_v1add, __pyx_n_s_v2add, __pyx_n_s_cur_region); if (unlikely(!__pyx_tuple__41)) __PYX_ERR(0, 337, __pyx_L1_error)
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34087 __pyx_umethod_PyDict_Type_values.type = (PyObject*)&PyDict_Type;
34088 __pyx_umethod_PySet_Type_intersection.type = (PyObject*)&PySet_Type;
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34112 static CYTHON_SMALL_CODE int __Pyx_modinit_function_import_code(void); /*proto*/
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34142 __pyx_vtabptr_5MACS2_2IO_10ScoreTrack_scoreTrackII = &__pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII;
34143 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.set_pseudocount = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, __pyx_t_5numpy_float64_t, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_set_pseudocount;
34144 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.enable_trackline = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_enable_trackline;
34145 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.add_chromosome = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, __pyx_t_5numpy_int32_t, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_add_chromosome;
34146 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.add = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_add;
34147 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.finalize = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_finalize;
34148 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.get_data_by_chr = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_get_data_by_chr;
34149 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.get_chr_names = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_get_chr_names;
34150 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.change_normalization_method = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, char, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_change_normalization_method;
34151 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.normalize = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_normalize;
34152 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.change_score_method = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, char, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_change_score_method;
34153 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.compute_pvalue = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_pvalue;
34154 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.compute_qvalue = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_qvalue;
34155 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.make_pq_table = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_make_pq_table;
34156 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.compute_likelihood = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_likelihood;
34157 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.compute_sym_likelihood = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_sym_likelihood;
34158 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.compute_logFE = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_logFE;
34159 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.compute_foldenrichment = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_foldenrichment;
34160 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.compute_subtraction = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_subtraction;
34161 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.compute_SPMR = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_SPMR;
34162 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.compute_max = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_compute_max;
34163 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.write_bedGraph = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, PyObject *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_write_bedGraph *__pyx_optional_args))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_write_bedGraph;
34164 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.call_peaks = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_peaks *__pyx_optional_args))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_peaks;
34165 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.__pyx___close_peak = (PyBoolObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, PyObject *, __pyx_t_5numpy_int32_t, PyObject *, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak *__pyx_optional_args))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak;
34166 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.__pyx___close_peak2 = (PyBoolObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, PyObject *, PyObject *, __pyx_t_5numpy_int32_t, PyObject *, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak2 *__pyx_optional_args))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII___close_peak2;
34167 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.total = (__pyx_t_5numpy_int64_t (*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_total;
34168 __pyx_vtable_5MACS2_2IO_10ScoreTrack_scoreTrackII.call_broadpeaks = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_scoreTrackII *, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_broadpeaks *__pyx_optional_args))__pyx_f_5MACS2_2IO_10ScoreTrack_12scoreTrackII_call_broadpeaks;
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34172 #endif
34173 if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_5MACS2_2IO_10ScoreTrack_scoreTrackII.tp_dictoffset && __pyx_type_5MACS2_2IO_10ScoreTrack_scoreTrackII.tp_getattro == PyObject_GenericGetAttr)) {
34174 __pyx_type_5MACS2_2IO_10ScoreTrack_scoreTrackII.tp_getattro = __Pyx_PyObject_GenericGetAttr;
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34176 #if CYTHON_COMPILING_IN_CPYTHON
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34179 if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) {
34180 __pyx_wrapperbase_5MACS2_2IO_10ScoreTrack_12scoreTrackII___init__ = *((PyWrapperDescrObject *)wrapper)->d_base;
34181 __pyx_wrapperbase_5MACS2_2IO_10ScoreTrack_12scoreTrackII___init__.doc = __pyx_doc_5MACS2_2IO_10ScoreTrack_12scoreTrackII___init__;
34182 ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_5MACS2_2IO_10ScoreTrack_12scoreTrackII___init__;
34183 }
34184 }
34185 #endif
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34190 __pyx_vtabptr_5MACS2_2IO_10ScoreTrack_TwoConditionScores = &__pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores;
34191 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.set_pseudocount = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, __pyx_t_5numpy_float64_t, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_set_pseudocount;
34192 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.build = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_build;
34193 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.build_chromosome = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_build_chromosome;
34194 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.add_chromosome = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, __pyx_t_5numpy_int32_t))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_add_chromosome;
34195 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.add = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t, __pyx_t_5numpy_float64_t))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_add;
34196 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.finalize = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_finalize;
34197 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.get_data_by_chr = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_get_data_by_chr;
34198 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.get_chr_names = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, int __pyx_skip_dispatch))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_get_chr_names;
34199 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.write_bedGraph = (PyObject *(*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *, PyObject *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_write_bedGraph *__pyx_optional_args))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_write_bedGraph;
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34203 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.mean_from_peakcontent = (__pyx_t_5numpy_float64_t (*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *, PyObject *))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_mean_from_peakcontent;
34204 __pyx_vtable_5MACS2_2IO_10ScoreTrack_TwoConditionScores.total = (__pyx_t_5numpy_int64_t (*)(struct __pyx_obj_5MACS2_2IO_10ScoreTrack_TwoConditionScores *))__pyx_f_5MACS2_2IO_10ScoreTrack_18TwoConditionScores_total;
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34207 __pyx_type_5MACS2_2IO_10ScoreTrack_TwoConditionScores.tp_print = 0;
34208 #endif
34209 if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_5MACS2_2IO_10ScoreTrack_TwoConditionScores.tp_dictoffset && __pyx_type_5MACS2_2IO_10ScoreTrack_TwoConditionScores.tp_getattro == PyObject_GenericGetAttr)) {
34210 __pyx_type_5MACS2_2IO_10ScoreTrack_TwoConditionScores.tp_getattro = __Pyx_PyObject_GenericGetAttr;
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34217 __pyx_wrapperbase_5MACS2_2IO_10ScoreTrack_18TwoConditionScores___init__.doc = __pyx_doc_5MACS2_2IO_10ScoreTrack_18TwoConditionScores___init__;
34218 ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_5MACS2_2IO_10ScoreTrack_18TwoConditionScores___init__;
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34222 if (__Pyx_SetVtable(__pyx_type_5MACS2_2IO_10ScoreTrack_TwoConditionScores.tp_dict, __pyx_vtabptr_5MACS2_2IO_10ScoreTrack_TwoConditionScores) < 0) __PYX_ERR(0, 1297, __pyx_L1_error)
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34226 __Pyx_RefNannyFinishContext();
34227 return 0;
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34229 __Pyx_RefNannyFinishContext();
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__Pyx_modinit_type_import_code(void)34233 static int __Pyx_modinit_type_import_code(void) {
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34240 __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "type",
34241 #if defined(PYPY_VERSION_NUM) && PYPY_VERSION_NUM < 0x050B0000
34242 sizeof(PyTypeObject),
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34246 __Pyx_ImportType_CheckSize_Warn);
34247 if (!__pyx_ptype_7cpython_4type_type) __PYX_ERR(3, 9, __pyx_L1_error)
34248 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
34249 __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(4, 8, __pyx_L1_error)
34250 __Pyx_GOTREF(__pyx_t_1);
34251 __pyx_ptype_7cpython_4bool_bool = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "bool", sizeof(PyBoolObject), __Pyx_ImportType_CheckSize_Warn);
34252 if (!__pyx_ptype_7cpython_4bool_bool) __PYX_ERR(4, 8, __pyx_L1_error)
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34254 __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(5, 15, __pyx_L1_error)
34255 __Pyx_GOTREF(__pyx_t_1);
34256 __pyx_ptype_7cpython_7complex_complex = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "complex", sizeof(PyComplexObject), __Pyx_ImportType_CheckSize_Warn);
34257 if (!__pyx_ptype_7cpython_7complex_complex) __PYX_ERR(5, 15, __pyx_L1_error)
34258 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
34259 __pyx_t_1 = PyImport_ImportModule("numpy"); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 206, __pyx_L1_error)
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34261 __pyx_ptype_5numpy_dtype = __Pyx_ImportType(__pyx_t_1, "numpy", "dtype", sizeof(PyArray_Descr), __Pyx_ImportType_CheckSize_Ignore);
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34264 if (!__pyx_ptype_5numpy_flatiter) __PYX_ERR(2, 229, __pyx_L1_error)
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34267 __pyx_ptype_5numpy_ndarray = __Pyx_ImportType(__pyx_t_1, "numpy", "ndarray", sizeof(PyArrayObject), __Pyx_ImportType_CheckSize_Ignore);
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34269 __pyx_ptype_5numpy_ufunc = __Pyx_ImportType(__pyx_t_1, "numpy", "ufunc", sizeof(PyUFuncObject), __Pyx_ImportType_CheckSize_Warn);
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34271 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
34272 __Pyx_RefNannyFinishContext();
34273 return 0;
34274 __pyx_L1_error:;
34275 __Pyx_XDECREF(__pyx_t_1);
34276 __Pyx_RefNannyFinishContext();
34277 return -1;
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34279
__Pyx_modinit_variable_import_code(void)34280 static int __Pyx_modinit_variable_import_code(void) {
34281 __Pyx_RefNannyDeclarations
34282 __Pyx_RefNannySetupContext("__Pyx_modinit_variable_import_code", 0);
34283 /*--- Variable import code ---*/
34284 __Pyx_RefNannyFinishContext();
34285 return 0;
34286 }
34287
__Pyx_modinit_function_import_code(void)34288 static int __Pyx_modinit_function_import_code(void) {
34289 __Pyx_RefNannyDeclarations
34290 __Pyx_RefNannySetupContext("__Pyx_modinit_function_import_code", 0);
34291 /*--- Function import code ---*/
34292 __Pyx_RefNannyFinishContext();
34293 return 0;
34294 }
34295
34296
34297 #if PY_MAJOR_VERSION < 3
34298 #ifdef CYTHON_NO_PYINIT_EXPORT
34299 #define __Pyx_PyMODINIT_FUNC void
34300 #else
34301 #define __Pyx_PyMODINIT_FUNC PyMODINIT_FUNC
34302 #endif
34303 #else
34304 #ifdef CYTHON_NO_PYINIT_EXPORT
34305 #define __Pyx_PyMODINIT_FUNC PyObject *
34306 #else
34307 #define __Pyx_PyMODINIT_FUNC PyMODINIT_FUNC
34308 #endif
34309 #endif
34310
34311
34312 #if PY_MAJOR_VERSION < 3
34313 __Pyx_PyMODINIT_FUNC initScoreTrack(void) CYTHON_SMALL_CODE; /*proto*/
initScoreTrack(void)34314 __Pyx_PyMODINIT_FUNC initScoreTrack(void)
34315 #else
34316 __Pyx_PyMODINIT_FUNC PyInit_ScoreTrack(void) CYTHON_SMALL_CODE; /*proto*/
34317 __Pyx_PyMODINIT_FUNC PyInit_ScoreTrack(void)
34318 #if CYTHON_PEP489_MULTI_PHASE_INIT
34319 {
34320 return PyModuleDef_Init(&__pyx_moduledef);
34321 }
34322 static CYTHON_SMALL_CODE int __Pyx_check_single_interpreter(void) {
34323 #if PY_VERSION_HEX >= 0x030700A1
34324 static PY_INT64_T main_interpreter_id = -1;
34325 PY_INT64_T current_id = PyInterpreterState_GetID(PyThreadState_Get()->interp);
34326 if (main_interpreter_id == -1) {
34327 main_interpreter_id = current_id;
34328 return (unlikely(current_id == -1)) ? -1 : 0;
34329 } else if (unlikely(main_interpreter_id != current_id))
34330 #else
34331 static PyInterpreterState *main_interpreter = NULL;
34332 PyInterpreterState *current_interpreter = PyThreadState_Get()->interp;
34333 if (!main_interpreter) {
34334 main_interpreter = current_interpreter;
34335 } else if (unlikely(main_interpreter != current_interpreter))
34336 #endif
34337 {
34338 PyErr_SetString(
34339 PyExc_ImportError,
34340 "Interpreter change detected - this module can only be loaded into one interpreter per process.");
34341 return -1;
34342 }
34343 return 0;
34344 }
34345 static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *moddict, const char* from_name, const char* to_name, int allow_none) {
34346 PyObject *value = PyObject_GetAttrString(spec, from_name);
34347 int result = 0;
34348 if (likely(value)) {
34349 if (allow_none || value != Py_None) {
34350 result = PyDict_SetItemString(moddict, to_name, value);
34351 }
34352 Py_DECREF(value);
34353 } else if (PyErr_ExceptionMatches(PyExc_AttributeError)) {
34354 PyErr_Clear();
34355 } else {
34356 result = -1;
34357 }
34358 return result;
34359 }
34360 static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, CYTHON_UNUSED PyModuleDef *def) {
34361 PyObject *module = NULL, *moddict, *modname;
34362 if (__Pyx_check_single_interpreter())
34363 return NULL;
34364 if (__pyx_m)
34365 return __Pyx_NewRef(__pyx_m);
34366 modname = PyObject_GetAttrString(spec, "name");
34367 if (unlikely(!modname)) goto bad;
34368 module = PyModule_NewObject(modname);
34369 Py_DECREF(modname);
34370 if (unlikely(!module)) goto bad;
34371 moddict = PyModule_GetDict(module);
34372 if (unlikely(!moddict)) goto bad;
34373 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "loader", "__loader__", 1) < 0)) goto bad;
34374 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "origin", "__file__", 1) < 0)) goto bad;
34375 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "parent", "__package__", 1) < 0)) goto bad;
34376 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "submodule_search_locations", "__path__", 0) < 0)) goto bad;
34377 return module;
34378 bad:
34379 Py_XDECREF(module);
34380 return NULL;
34381 }
34382
34383
34384 static CYTHON_SMALL_CODE int __pyx_pymod_exec_ScoreTrack(PyObject *__pyx_pyinit_module)
34385 #endif
34386 #endif
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34390 PyObject *__pyx_t_2 = NULL;
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34395 PyErr_SetString(PyExc_RuntimeError, "Module 'ScoreTrack' has already been imported. Re-initialisation is not supported.");
34396 return -1;
34397 }
34398 #elif PY_MAJOR_VERSION >= 3
34399 if (__pyx_m) return __Pyx_NewRef(__pyx_m);
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34401 #if CYTHON_REFNANNY
34402 __Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny");
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34404 PyErr_Clear();
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34416 __pyx_empty_bytes = PyBytes_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_bytes)) __PYX_ERR(0, 1, __pyx_L1_error)
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34425 if (__pyx_Coroutine_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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34435 #endif
34436 /*--- Library function declarations ---*/
34437 /*--- Threads initialization code ---*/
34438 #if defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS
34439 #ifdef WITH_THREAD /* Python build with threading support? */
34440 PyEval_InitThreads();
34441 #endif
34442 #endif
34443 /*--- Module creation code ---*/
34444 #if CYTHON_PEP489_MULTI_PHASE_INIT
34445 __pyx_m = __pyx_pyinit_module;
34446 Py_INCREF(__pyx_m);
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34449 __pyx_m = Py_InitModule4("ScoreTrack", __pyx_methods, __pyx_k_Module_for_Feature_IO_classes_Th, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m);
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34454 #endif
34455 __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(0, 1, __pyx_L1_error)
34456 Py_INCREF(__pyx_d);
34457 __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(0, 1, __pyx_L1_error)
34458 Py_INCREF(__pyx_b);
34459 __pyx_cython_runtime = PyImport_AddModule((char *) "cython_runtime"); if (unlikely(!__pyx_cython_runtime)) __PYX_ERR(0, 1, __pyx_L1_error)
34460 Py_INCREF(__pyx_cython_runtime);
34461 if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) __PYX_ERR(0, 1, __pyx_L1_error);
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34463 if (__Pyx_InitGlobals() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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34468 if (PyObject_SetAttr(__pyx_m, __pyx_n_s_name_2, __pyx_n_s_main) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
34469 }
34470 #if PY_MAJOR_VERSION >= 3
34471 {
34472 PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) __PYX_ERR(0, 1, __pyx_L1_error)
34473 if (!PyDict_GetItemString(modules, "MACS2.IO.ScoreTrack")) {
34474 if (unlikely(PyDict_SetItemString(modules, "MACS2.IO.ScoreTrack", __pyx_m) < 0)) __PYX_ERR(0, 1, __pyx_L1_error)
34475 }
34476 }
34477 #endif
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34484 (void)__Pyx_modinit_variable_export_code();
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34496 /* "MACS2/IO/ScoreTrack.pyx":15
34497 * # python modules
34498 * # ------------------------------------
34499 * import numpy as np # <<<<<<<<<<<<<<
34500 * cimport numpy as np
34501 * from numpy cimport uint8_t, uint16_t, uint32_t, uint64_t, int8_t, int16_t, int32_t, int64_t, float32_t, float64_t
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34508 /* "MACS2/IO/ScoreTrack.pyx":26
34509 * #ctypedef np.uint32_t uint32_t
34510 *
34511 * from copy import copy # <<<<<<<<<<<<<<
34512 * from functools import reduce
34513 *
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34530 *
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34550 /* "MACS2/IO/ScoreTrack.pyx":31
34551 * from cpython cimport bool
34552 *
34553 * from MACS2.Signal import maxima, enforce_valleys, enforce_peakyness # <<<<<<<<<<<<<<
34554 *
34555 * cimport cython
34556 */
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34584
34585 /* "MACS2/IO/ScoreTrack.pyx":37
34586 * from libc.math cimport log10,log, floor, ceil
34587 *
34588 * from MACS2.Constants import BYTE4, FBYTE4, array # <<<<<<<<<<<<<<
34589 * from MACS2.Prob import poisson_cdf
34590 * from MACS2.IO.PeakIO import PeakIO, BroadPeakIO, parse_peakname
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34619
34620 /* "MACS2/IO/ScoreTrack.pyx":38
34621 *
34622 * from MACS2.Constants import BYTE4, FBYTE4, array
34623 * from MACS2.Prob import poisson_cdf # <<<<<<<<<<<<<<
34624 * from MACS2.IO.PeakIO import PeakIO, BroadPeakIO, parse_peakname
34625 *
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34641 /* "MACS2/IO/ScoreTrack.pyx":39
34642 * from MACS2.Constants import BYTE4, FBYTE4, array
34643 * from MACS2.Prob import poisson_cdf
34644 * from MACS2.IO.PeakIO import PeakIO, BroadPeakIO, parse_peakname # <<<<<<<<<<<<<<
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34646 * import logging
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34676 /* "MACS2/IO/ScoreTrack.pyx":41
34677 * from MACS2.IO.PeakIO import PeakIO, BroadPeakIO, parse_peakname
34678 *
34679 * import logging # <<<<<<<<<<<<<<
34680 *
34681 * # ------------------------------------
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34689 * # constants
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34706 /* "MACS2/IO/ScoreTrack.pyx":48
34707 * __version__ = "scoreTrackI $Revision$"
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34716 * cdef inline int32_t int_min(int32_t a, int32_t b): return a if a <= b else b
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35163 Py_XINCREF(old_val);
35164 Py_XINCREF(old_tb);
35165 __Pyx_ErrRestore(old_exc, old_val, old_tb);
35166 PyErr_PrintEx(1);
35167 }
35168 #if PY_MAJOR_VERSION < 3
35169 ctx = PyString_FromString(name);
35170 #else
35171 ctx = PyUnicode_FromString(name);
35172 #endif
35173 __Pyx_ErrRestore(old_exc, old_val, old_tb);
35174 if (!ctx) {
35175 PyErr_WriteUnraisable(Py_None);
35176 } else {
35177 PyErr_WriteUnraisable(ctx);
35178 Py_DECREF(ctx);
35179 }
35180 #ifdef WITH_THREAD
35181 if (nogil)
35182 PyGILState_Release(state);
35183 #endif
35184 }
35185
35186 /* PyDictVersioning */
35187 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
__Pyx_get_tp_dict_version(PyObject * obj)35188 static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) {
35189 PyObject *dict = Py_TYPE(obj)->tp_dict;
35190 return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0;
35191 }
__Pyx_get_object_dict_version(PyObject * obj)35192 static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) {
35193 PyObject **dictptr = NULL;
35194 Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset;
35195 if (offset) {
35196 #if CYTHON_COMPILING_IN_CPYTHON
35197 dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj);
35198 #else
35199 dictptr = _PyObject_GetDictPtr(obj);
35200 #endif
35201 }
35202 return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0;
35203 }
__Pyx_object_dict_version_matches(PyObject * obj,PY_UINT64_T tp_dict_version,PY_UINT64_T obj_dict_version)35204 static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) {
35205 PyObject *dict = Py_TYPE(obj)->tp_dict;
35206 if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict)))
35207 return 0;
35208 return obj_dict_version == __Pyx_get_object_dict_version(obj);
35209 }
35210 #endif
35211
35212 /* GetModuleGlobalName */
35213 #if CYTHON_USE_DICT_VERSIONS
__Pyx__GetModuleGlobalName(PyObject * name,PY_UINT64_T * dict_version,PyObject ** dict_cached_value)35214 static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value)
35215 #else
35216 static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name)
35217 #endif
35218 {
35219 PyObject *result;
35220 #if !CYTHON_AVOID_BORROWED_REFS
35221 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
35222 result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash);
35223 __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
35224 if (likely(result)) {
35225 return __Pyx_NewRef(result);
35226 } else if (unlikely(PyErr_Occurred())) {
35227 return NULL;
35228 }
35229 #else
35230 result = PyDict_GetItem(__pyx_d, name);
35231 __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
35232 if (likely(result)) {
35233 return __Pyx_NewRef(result);
35234 }
35235 #endif
35236 #else
35237 result = PyObject_GetItem(__pyx_d, name);
35238 __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
35239 if (likely(result)) {
35240 return __Pyx_NewRef(result);
35241 }
35242 PyErr_Clear();
35243 #endif
35244 return __Pyx_GetBuiltinName(name);
35245 }
35246
35247 /* GetItemInt */
__Pyx_GetItemInt_Generic(PyObject * o,PyObject * j)35248 static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
35249 PyObject *r;
35250 if (!j) return NULL;
35251 r = PyObject_GetItem(o, j);
35252 Py_DECREF(j);
35253 return r;
35254 }
__Pyx_GetItemInt_List_Fast(PyObject * o,Py_ssize_t i,CYTHON_NCP_UNUSED int wraparound,CYTHON_NCP_UNUSED int boundscheck)35255 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
35256 CYTHON_NCP_UNUSED int wraparound,
35257 CYTHON_NCP_UNUSED int boundscheck) {
35258 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
35259 Py_ssize_t wrapped_i = i;
35260 if (wraparound & unlikely(i < 0)) {
35261 wrapped_i += PyList_GET_SIZE(o);
35262 }
35263 if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) {
35264 PyObject *r = PyList_GET_ITEM(o, wrapped_i);
35265 Py_INCREF(r);
35266 return r;
35267 }
35268 return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
35269 #else
35270 return PySequence_GetItem(o, i);
35271 #endif
35272 }
__Pyx_GetItemInt_Tuple_Fast(PyObject * o,Py_ssize_t i,CYTHON_NCP_UNUSED int wraparound,CYTHON_NCP_UNUSED int boundscheck)35273 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
35274 CYTHON_NCP_UNUSED int wraparound,
35275 CYTHON_NCP_UNUSED int boundscheck) {
35276 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
35277 Py_ssize_t wrapped_i = i;
35278 if (wraparound & unlikely(i < 0)) {
35279 wrapped_i += PyTuple_GET_SIZE(o);
35280 }
35281 if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) {
35282 PyObject *r = PyTuple_GET_ITEM(o, wrapped_i);
35283 Py_INCREF(r);
35284 return r;
35285 }
35286 return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
35287 #else
35288 return PySequence_GetItem(o, i);
35289 #endif
35290 }
__Pyx_GetItemInt_Fast(PyObject * o,Py_ssize_t i,int is_list,CYTHON_NCP_UNUSED int wraparound,CYTHON_NCP_UNUSED int boundscheck)35291 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list,
35292 CYTHON_NCP_UNUSED int wraparound,
35293 CYTHON_NCP_UNUSED int boundscheck) {
35294 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
35295 if (is_list || PyList_CheckExact(o)) {
35296 Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
35297 if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) {
35298 PyObject *r = PyList_GET_ITEM(o, n);
35299 Py_INCREF(r);
35300 return r;
35301 }
35302 }
35303 else if (PyTuple_CheckExact(o)) {
35304 Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
35305 if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) {
35306 PyObject *r = PyTuple_GET_ITEM(o, n);
35307 Py_INCREF(r);
35308 return r;
35309 }
35310 } else {
35311 PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
35312 if (likely(m && m->sq_item)) {
35313 if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
35314 Py_ssize_t l = m->sq_length(o);
35315 if (likely(l >= 0)) {
35316 i += l;
35317 } else {
35318 if (!PyErr_ExceptionMatches(PyExc_OverflowError))
35319 return NULL;
35320 PyErr_Clear();
35321 }
35322 }
35323 return m->sq_item(o, i);
35324 }
35325 }
35326 #else
35327 if (is_list || PySequence_Check(o)) {
35328 return PySequence_GetItem(o, i);
35329 }
35330 #endif
35331 return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
35332 }
35333
35334 /* ObjectGetItem */
35335 #if CYTHON_USE_TYPE_SLOTS
__Pyx_PyObject_GetIndex(PyObject * obj,PyObject * index)35336 static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject* index) {
35337 PyObject *runerr;
35338 Py_ssize_t key_value;
35339 PySequenceMethods *m = Py_TYPE(obj)->tp_as_sequence;
35340 if (unlikely(!(m && m->sq_item))) {
35341 PyErr_Format(PyExc_TypeError, "'%.200s' object is not subscriptable", Py_TYPE(obj)->tp_name);
35342 return NULL;
35343 }
35344 key_value = __Pyx_PyIndex_AsSsize_t(index);
35345 if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) {
35346 return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1);
35347 }
35348 if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) {
35349 PyErr_Clear();
35350 PyErr_Format(PyExc_IndexError, "cannot fit '%.200s' into an index-sized integer", Py_TYPE(index)->tp_name);
35351 }
35352 return NULL;
35353 }
__Pyx_PyObject_GetItem(PyObject * obj,PyObject * key)35354 static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key) {
35355 PyMappingMethods *m = Py_TYPE(obj)->tp_as_mapping;
35356 if (likely(m && m->mp_subscript)) {
35357 return m->mp_subscript(obj, key);
35358 }
35359 return __Pyx_PyObject_GetIndex(obj, key);
35360 }
35361 #endif
35362
35363 /* GetTopmostException */
35364 #if CYTHON_USE_EXC_INFO_STACK
35365 static _PyErr_StackItem *
__Pyx_PyErr_GetTopmostException(PyThreadState * tstate)35366 __Pyx_PyErr_GetTopmostException(PyThreadState *tstate)
35367 {
35368 _PyErr_StackItem *exc_info = tstate->exc_info;
35369 while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) &&
35370 exc_info->previous_item != NULL)
35371 {
35372 exc_info = exc_info->previous_item;
35373 }
35374 return exc_info;
35375 }
35376 #endif
35377
35378 /* SaveResetException */
35379 #if CYTHON_FAST_THREAD_STATE
__Pyx__ExceptionSave(PyThreadState * tstate,PyObject ** type,PyObject ** value,PyObject ** tb)35380 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
35381 #if CYTHON_USE_EXC_INFO_STACK
35382 _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate);
35383 *type = exc_info->exc_type;
35384 *value = exc_info->exc_value;
35385 *tb = exc_info->exc_traceback;
35386 #else
35387 *type = tstate->exc_type;
35388 *value = tstate->exc_value;
35389 *tb = tstate->exc_traceback;
35390 #endif
35391 Py_XINCREF(*type);
35392 Py_XINCREF(*value);
35393 Py_XINCREF(*tb);
35394 }
__Pyx__ExceptionReset(PyThreadState * tstate,PyObject * type,PyObject * value,PyObject * tb)35395 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
35396 PyObject *tmp_type, *tmp_value, *tmp_tb;
35397 #if CYTHON_USE_EXC_INFO_STACK
35398 _PyErr_StackItem *exc_info = tstate->exc_info;
35399 tmp_type = exc_info->exc_type;
35400 tmp_value = exc_info->exc_value;
35401 tmp_tb = exc_info->exc_traceback;
35402 exc_info->exc_type = type;
35403 exc_info->exc_value = value;
35404 exc_info->exc_traceback = tb;
35405 #else
35406 tmp_type = tstate->exc_type;
35407 tmp_value = tstate->exc_value;
35408 tmp_tb = tstate->exc_traceback;
35409 tstate->exc_type = type;
35410 tstate->exc_value = value;
35411 tstate->exc_traceback = tb;
35412 #endif
35413 Py_XDECREF(tmp_type);
35414 Py_XDECREF(tmp_value);
35415 Py_XDECREF(tmp_tb);
35416 }
35417 #endif
35418
35419 /* PyErrExceptionMatches */
35420 #if CYTHON_FAST_THREAD_STATE
__Pyx_PyErr_ExceptionMatchesTuple(PyObject * exc_type,PyObject * tuple)35421 static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
35422 Py_ssize_t i, n;
35423 n = PyTuple_GET_SIZE(tuple);
35424 #if PY_MAJOR_VERSION >= 3
35425 for (i=0; i<n; i++) {
35426 if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
35427 }
35428 #endif
35429 for (i=0; i<n; i++) {
35430 if (__Pyx_PyErr_GivenExceptionMatches(exc_type, PyTuple_GET_ITEM(tuple, i))) return 1;
35431 }
35432 return 0;
35433 }
__Pyx_PyErr_ExceptionMatchesInState(PyThreadState * tstate,PyObject * err)35434 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
35435 PyObject *exc_type = tstate->curexc_type;
35436 if (exc_type == err) return 1;
35437 if (unlikely(!exc_type)) return 0;
35438 if (unlikely(PyTuple_Check(err)))
35439 return __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err);
35440 return __Pyx_PyErr_GivenExceptionMatches(exc_type, err);
35441 }
35442 #endif
35443
35444 /* GetException */
35445 #if CYTHON_FAST_THREAD_STATE
__Pyx__GetException(PyThreadState * tstate,PyObject ** type,PyObject ** value,PyObject ** tb)35446 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb)
35447 #else
35448 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb)
35449 #endif
35450 {
35451 PyObject *local_type, *local_value, *local_tb;
35452 #if CYTHON_FAST_THREAD_STATE
35453 PyObject *tmp_type, *tmp_value, *tmp_tb;
35454 local_type = tstate->curexc_type;
35455 local_value = tstate->curexc_value;
35456 local_tb = tstate->curexc_traceback;
35457 tstate->curexc_type = 0;
35458 tstate->curexc_value = 0;
35459 tstate->curexc_traceback = 0;
35460 #else
35461 PyErr_Fetch(&local_type, &local_value, &local_tb);
35462 #endif
35463 PyErr_NormalizeException(&local_type, &local_value, &local_tb);
35464 #if CYTHON_FAST_THREAD_STATE
35465 if (unlikely(tstate->curexc_type))
35466 #else
35467 if (unlikely(PyErr_Occurred()))
35468 #endif
35469 goto bad;
35470 #if PY_MAJOR_VERSION >= 3
35471 if (local_tb) {
35472 if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
35473 goto bad;
35474 }
35475 #endif
35476 Py_XINCREF(local_tb);
35477 Py_XINCREF(local_type);
35478 Py_XINCREF(local_value);
35479 *type = local_type;
35480 *value = local_value;
35481 *tb = local_tb;
35482 #if CYTHON_FAST_THREAD_STATE
35483 #if CYTHON_USE_EXC_INFO_STACK
35484 {
35485 _PyErr_StackItem *exc_info = tstate->exc_info;
35486 tmp_type = exc_info->exc_type;
35487 tmp_value = exc_info->exc_value;
35488 tmp_tb = exc_info->exc_traceback;
35489 exc_info->exc_type = local_type;
35490 exc_info->exc_value = local_value;
35491 exc_info->exc_traceback = local_tb;
35492 }
35493 #else
35494 tmp_type = tstate->exc_type;
35495 tmp_value = tstate->exc_value;
35496 tmp_tb = tstate->exc_traceback;
35497 tstate->exc_type = local_type;
35498 tstate->exc_value = local_value;
35499 tstate->exc_traceback = local_tb;
35500 #endif
35501 Py_XDECREF(tmp_type);
35502 Py_XDECREF(tmp_value);
35503 Py_XDECREF(tmp_tb);
35504 #else
35505 PyErr_SetExcInfo(local_type, local_value, local_tb);
35506 #endif
35507 return 0;
35508 bad:
35509 *type = 0;
35510 *value = 0;
35511 *tb = 0;
35512 Py_XDECREF(local_type);
35513 Py_XDECREF(local_value);
35514 Py_XDECREF(local_tb);
35515 return -1;
35516 }
35517
35518 /* PyFunctionFastCall */
35519 #if CYTHON_FAST_PYCALL
__Pyx_PyFunction_FastCallNoKw(PyCodeObject * co,PyObject ** args,Py_ssize_t na,PyObject * globals)35520 static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na,
35521 PyObject *globals) {
35522 PyFrameObject *f;
35523 PyThreadState *tstate = __Pyx_PyThreadState_Current;
35524 PyObject **fastlocals;
35525 Py_ssize_t i;
35526 PyObject *result;
35527 assert(globals != NULL);
35528 /* XXX Perhaps we should create a specialized
35529 PyFrame_New() that doesn't take locals, but does
35530 take builtins without sanity checking them.
35531 */
35532 assert(tstate != NULL);
35533 f = PyFrame_New(tstate, co, globals, NULL);
35534 if (f == NULL) {
35535 return NULL;
35536 }
35537 fastlocals = __Pyx_PyFrame_GetLocalsplus(f);
35538 for (i = 0; i < na; i++) {
35539 Py_INCREF(*args);
35540 fastlocals[i] = *args++;
35541 }
35542 result = PyEval_EvalFrameEx(f,0);
35543 ++tstate->recursion_depth;
35544 Py_DECREF(f);
35545 --tstate->recursion_depth;
35546 return result;
35547 }
35548 #if 1 || PY_VERSION_HEX < 0x030600B1
__Pyx_PyFunction_FastCallDict(PyObject * func,PyObject ** args,Py_ssize_t nargs,PyObject * kwargs)35549 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) {
35550 PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func);
35551 PyObject *globals = PyFunction_GET_GLOBALS(func);
35552 PyObject *argdefs = PyFunction_GET_DEFAULTS(func);
35553 PyObject *closure;
35554 #if PY_MAJOR_VERSION >= 3
35555 PyObject *kwdefs;
35556 #endif
35557 PyObject *kwtuple, **k;
35558 PyObject **d;
35559 Py_ssize_t nd;
35560 Py_ssize_t nk;
35561 PyObject *result;
35562 assert(kwargs == NULL || PyDict_Check(kwargs));
35563 nk = kwargs ? PyDict_Size(kwargs) : 0;
35564 if (Py_EnterRecursiveCall((char*)" while calling a Python object")) {
35565 return NULL;
35566 }
35567 if (
35568 #if PY_MAJOR_VERSION >= 3
35569 co->co_kwonlyargcount == 0 &&
35570 #endif
35571 likely(kwargs == NULL || nk == 0) &&
35572 co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) {
35573 if (argdefs == NULL && co->co_argcount == nargs) {
35574 result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals);
35575 goto done;
35576 }
35577 else if (nargs == 0 && argdefs != NULL
35578 && co->co_argcount == Py_SIZE(argdefs)) {
35579 /* function called with no arguments, but all parameters have
35580 a default value: use default values as arguments .*/
35581 args = &PyTuple_GET_ITEM(argdefs, 0);
35582 result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals);
35583 goto done;
35584 }
35585 }
35586 if (kwargs != NULL) {
35587 Py_ssize_t pos, i;
35588 kwtuple = PyTuple_New(2 * nk);
35589 if (kwtuple == NULL) {
35590 result = NULL;
35591 goto done;
35592 }
35593 k = &PyTuple_GET_ITEM(kwtuple, 0);
35594 pos = i = 0;
35595 while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) {
35596 Py_INCREF(k[i]);
35597 Py_INCREF(k[i+1]);
35598 i += 2;
35599 }
35600 nk = i / 2;
35601 }
35602 else {
35603 kwtuple = NULL;
35604 k = NULL;
35605 }
35606 closure = PyFunction_GET_CLOSURE(func);
35607 #if PY_MAJOR_VERSION >= 3
35608 kwdefs = PyFunction_GET_KW_DEFAULTS(func);
35609 #endif
35610 if (argdefs != NULL) {
35611 d = &PyTuple_GET_ITEM(argdefs, 0);
35612 nd = Py_SIZE(argdefs);
35613 }
35614 else {
35615 d = NULL;
35616 nd = 0;
35617 }
35618 #if PY_MAJOR_VERSION >= 3
35619 result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL,
35620 args, (int)nargs,
35621 k, (int)nk,
35622 d, (int)nd, kwdefs, closure);
35623 #else
35624 result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL,
35625 args, (int)nargs,
35626 k, (int)nk,
35627 d, (int)nd, closure);
35628 #endif
35629 Py_XDECREF(kwtuple);
35630 done:
35631 Py_LeaveRecursiveCall();
35632 return result;
35633 }
35634 #endif
35635 #endif
35636
35637 /* PyCFunctionFastCall */
35638 #if CYTHON_FAST_PYCCALL
__Pyx_PyCFunction_FastCall(PyObject * func_obj,PyObject ** args,Py_ssize_t nargs)35639 static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) {
35640 PyCFunctionObject *func = (PyCFunctionObject*)func_obj;
35641 PyCFunction meth = PyCFunction_GET_FUNCTION(func);
35642 PyObject *self = PyCFunction_GET_SELF(func);
35643 int flags = PyCFunction_GET_FLAGS(func);
35644 assert(PyCFunction_Check(func));
35645 assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)));
35646 assert(nargs >= 0);
35647 assert(nargs == 0 || args != NULL);
35648 /* _PyCFunction_FastCallDict() must not be called with an exception set,
35649 because it may clear it (directly or indirectly) and so the
35650 caller loses its exception */
35651 assert(!PyErr_Occurred());
35652 if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) {
35653 return (*((__Pyx_PyCFunctionFastWithKeywords)(void*)meth)) (self, args, nargs, NULL);
35654 } else {
35655 return (*((__Pyx_PyCFunctionFast)(void*)meth)) (self, args, nargs);
35656 }
35657 }
35658 #endif
35659
35660 /* PyObjectCall */
35661 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx_PyObject_Call(PyObject * func,PyObject * arg,PyObject * kw)35662 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
35663 PyObject *result;
35664 ternaryfunc call = func->ob_type->tp_call;
35665 if (unlikely(!call))
35666 return PyObject_Call(func, arg, kw);
35667 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
35668 return NULL;
35669 result = (*call)(func, arg, kw);
35670 Py_LeaveRecursiveCall();
35671 if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
35672 PyErr_SetString(
35673 PyExc_SystemError,
35674 "NULL result without error in PyObject_Call");
35675 }
35676 return result;
35677 }
35678 #endif
35679
35680 /* PyObjectSetAttrStr */
35681 #if CYTHON_USE_TYPE_SLOTS
__Pyx_PyObject_SetAttrStr(PyObject * obj,PyObject * attr_name,PyObject * value)35682 static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) {
35683 PyTypeObject* tp = Py_TYPE(obj);
35684 if (likely(tp->tp_setattro))
35685 return tp->tp_setattro(obj, attr_name, value);
35686 #if PY_MAJOR_VERSION < 3
35687 if (likely(tp->tp_setattr))
35688 return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value);
35689 #endif
35690 return PyObject_SetAttr(obj, attr_name, value);
35691 }
35692 #endif
35693
35694 /* RaiseArgTupleInvalid */
__Pyx_RaiseArgtupleInvalid(const char * func_name,int exact,Py_ssize_t num_min,Py_ssize_t num_max,Py_ssize_t num_found)35695 static void __Pyx_RaiseArgtupleInvalid(
35696 const char* func_name,
35697 int exact,
35698 Py_ssize_t num_min,
35699 Py_ssize_t num_max,
35700 Py_ssize_t num_found)
35701 {
35702 Py_ssize_t num_expected;
35703 const char *more_or_less;
35704 if (num_found < num_min) {
35705 num_expected = num_min;
35706 more_or_less = "at least";
35707 } else {
35708 num_expected = num_max;
35709 more_or_less = "at most";
35710 }
35711 if (exact) {
35712 more_or_less = "exactly";
35713 }
35714 PyErr_Format(PyExc_TypeError,
35715 "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)",
35716 func_name, more_or_less, num_expected,
35717 (num_expected == 1) ? "" : "s", num_found);
35718 }
35719
35720 /* RaiseDoubleKeywords */
__Pyx_RaiseDoubleKeywordsError(const char * func_name,PyObject * kw_name)35721 static void __Pyx_RaiseDoubleKeywordsError(
35722 const char* func_name,
35723 PyObject* kw_name)
35724 {
35725 PyErr_Format(PyExc_TypeError,
35726 #if PY_MAJOR_VERSION >= 3
35727 "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
35728 #else
35729 "%s() got multiple values for keyword argument '%s'", func_name,
35730 PyString_AsString(kw_name));
35731 #endif
35732 }
35733
35734 /* ParseKeywords */
__Pyx_ParseOptionalKeywords(PyObject * kwds,PyObject ** argnames[],PyObject * kwds2,PyObject * values[],Py_ssize_t num_pos_args,const char * function_name)35735 static int __Pyx_ParseOptionalKeywords(
35736 PyObject *kwds,
35737 PyObject **argnames[],
35738 PyObject *kwds2,
35739 PyObject *values[],
35740 Py_ssize_t num_pos_args,
35741 const char* function_name)
35742 {
35743 PyObject *key = 0, *value = 0;
35744 Py_ssize_t pos = 0;
35745 PyObject*** name;
35746 PyObject*** first_kw_arg = argnames + num_pos_args;
35747 while (PyDict_Next(kwds, &pos, &key, &value)) {
35748 name = first_kw_arg;
35749 while (*name && (**name != key)) name++;
35750 if (*name) {
35751 values[name-argnames] = value;
35752 continue;
35753 }
35754 name = first_kw_arg;
35755 #if PY_MAJOR_VERSION < 3
35756 if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) {
35757 while (*name) {
35758 if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
35759 && _PyString_Eq(**name, key)) {
35760 values[name-argnames] = value;
35761 break;
35762 }
35763 name++;
35764 }
35765 if (*name) continue;
35766 else {
35767 PyObject*** argname = argnames;
35768 while (argname != first_kw_arg) {
35769 if ((**argname == key) || (
35770 (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
35771 && _PyString_Eq(**argname, key))) {
35772 goto arg_passed_twice;
35773 }
35774 argname++;
35775 }
35776 }
35777 } else
35778 #endif
35779 if (likely(PyUnicode_Check(key))) {
35780 while (*name) {
35781 int cmp = (**name == key) ? 0 :
35782 #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
35783 (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
35784 #endif
35785 PyUnicode_Compare(**name, key);
35786 if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
35787 if (cmp == 0) {
35788 values[name-argnames] = value;
35789 break;
35790 }
35791 name++;
35792 }
35793 if (*name) continue;
35794 else {
35795 PyObject*** argname = argnames;
35796 while (argname != first_kw_arg) {
35797 int cmp = (**argname == key) ? 0 :
35798 #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
35799 (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
35800 #endif
35801 PyUnicode_Compare(**argname, key);
35802 if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
35803 if (cmp == 0) goto arg_passed_twice;
35804 argname++;
35805 }
35806 }
35807 } else
35808 goto invalid_keyword_type;
35809 if (kwds2) {
35810 if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
35811 } else {
35812 goto invalid_keyword;
35813 }
35814 }
35815 return 0;
35816 arg_passed_twice:
35817 __Pyx_RaiseDoubleKeywordsError(function_name, key);
35818 goto bad;
35819 invalid_keyword_type:
35820 PyErr_Format(PyExc_TypeError,
35821 "%.200s() keywords must be strings", function_name);
35822 goto bad;
35823 invalid_keyword:
35824 PyErr_Format(PyExc_TypeError,
35825 #if PY_MAJOR_VERSION < 3
35826 "%.200s() got an unexpected keyword argument '%.200s'",
35827 function_name, PyString_AsString(key));
35828 #else
35829 "%s() got an unexpected keyword argument '%U'",
35830 function_name, key);
35831 #endif
35832 bad:
35833 return -1;
35834 }
35835
35836 /* ArgTypeTest */
__Pyx__ArgTypeTest(PyObject * obj,PyTypeObject * type,const char * name,int exact)35837 static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact)
35838 {
35839 if (unlikely(!type)) {
35840 PyErr_SetString(PyExc_SystemError, "Missing type object");
35841 return 0;
35842 }
35843 else if (exact) {
35844 #if PY_MAJOR_VERSION == 2
35845 if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1;
35846 #endif
35847 }
35848 else {
35849 if (likely(__Pyx_TypeCheck(obj, type))) return 1;
35850 }
35851 PyErr_Format(PyExc_TypeError,
35852 "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)",
35853 name, type->tp_name, Py_TYPE(obj)->tp_name);
35854 return 0;
35855 }
35856
35857 /* SetItemInt */
__Pyx_SetItemInt_Generic(PyObject * o,PyObject * j,PyObject * v)35858 static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v) {
35859 int r;
35860 if (!j) return -1;
35861 r = PyObject_SetItem(o, j, v);
35862 Py_DECREF(j);
35863 return r;
35864 }
__Pyx_SetItemInt_Fast(PyObject * o,Py_ssize_t i,PyObject * v,int is_list,CYTHON_NCP_UNUSED int wraparound,CYTHON_NCP_UNUSED int boundscheck)35865 static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v, int is_list,
35866 CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) {
35867 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
35868 if (is_list || PyList_CheckExact(o)) {
35869 Py_ssize_t n = (!wraparound) ? i : ((likely(i >= 0)) ? i : i + PyList_GET_SIZE(o));
35870 if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o)))) {
35871 PyObject* old = PyList_GET_ITEM(o, n);
35872 Py_INCREF(v);
35873 PyList_SET_ITEM(o, n, v);
35874 Py_DECREF(old);
35875 return 1;
35876 }
35877 } else {
35878 PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
35879 if (likely(m && m->sq_ass_item)) {
35880 if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
35881 Py_ssize_t l = m->sq_length(o);
35882 if (likely(l >= 0)) {
35883 i += l;
35884 } else {
35885 if (!PyErr_ExceptionMatches(PyExc_OverflowError))
35886 return -1;
35887 PyErr_Clear();
35888 }
35889 }
35890 return m->sq_ass_item(o, i, v);
35891 }
35892 }
35893 #else
35894 #if CYTHON_COMPILING_IN_PYPY
35895 if (is_list || (PySequence_Check(o) && !PyDict_Check(o)))
35896 #else
35897 if (is_list || PySequence_Check(o))
35898 #endif
35899 {
35900 return PySequence_SetItem(o, i, v);
35901 }
35902 #endif
35903 return __Pyx_SetItemInt_Generic(o, PyInt_FromSsize_t(i), v);
35904 }
35905
35906 /* PyIntBinop */
35907 #if !CYTHON_COMPILING_IN_PYPY
__Pyx_PyInt_AddObjC(PyObject * op1,PyObject * op2,CYTHON_UNUSED long intval,int inplace,int zerodivision_check)35908 static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
35909 (void)inplace;
35910 (void)zerodivision_check;
35911 #if PY_MAJOR_VERSION < 3
35912 if (likely(PyInt_CheckExact(op1))) {
35913 const long b = intval;
35914 long x;
35915 long a = PyInt_AS_LONG(op1);
35916 x = (long)((unsigned long)a + b);
35917 if (likely((x^a) >= 0 || (x^b) >= 0))
35918 return PyInt_FromLong(x);
35919 return PyLong_Type.tp_as_number->nb_add(op1, op2);
35920 }
35921 #endif
35922 #if CYTHON_USE_PYLONG_INTERNALS
35923 if (likely(PyLong_CheckExact(op1))) {
35924 const long b = intval;
35925 long a, x;
35926 #ifdef HAVE_LONG_LONG
35927 const PY_LONG_LONG llb = intval;
35928 PY_LONG_LONG lla, llx;
35929 #endif
35930 const digit* digits = ((PyLongObject*)op1)->ob_digit;
35931 const Py_ssize_t size = Py_SIZE(op1);
35932 if (likely(__Pyx_sst_abs(size) <= 1)) {
35933 a = likely(size) ? digits[0] : 0;
35934 if (size == -1) a = -a;
35935 } else {
35936 switch (size) {
35937 case -2:
35938 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
35939 a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
35940 break;
35941 #ifdef HAVE_LONG_LONG
35942 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
35943 lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
35944 goto long_long;
35945 #endif
35946 }
35947 CYTHON_FALLTHROUGH;
35948 case 2:
35949 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
35950 a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
35951 break;
35952 #ifdef HAVE_LONG_LONG
35953 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
35954 lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
35955 goto long_long;
35956 #endif
35957 }
35958 CYTHON_FALLTHROUGH;
35959 case -3:
35960 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
35961 a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
35962 break;
35963 #ifdef HAVE_LONG_LONG
35964 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
35965 lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
35966 goto long_long;
35967 #endif
35968 }
35969 CYTHON_FALLTHROUGH;
35970 case 3:
35971 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
35972 a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
35973 break;
35974 #ifdef HAVE_LONG_LONG
35975 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
35976 lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
35977 goto long_long;
35978 #endif
35979 }
35980 CYTHON_FALLTHROUGH;
35981 case -4:
35982 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
35983 a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
35984 break;
35985 #ifdef HAVE_LONG_LONG
35986 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
35987 lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
35988 goto long_long;
35989 #endif
35990 }
35991 CYTHON_FALLTHROUGH;
35992 case 4:
35993 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
35994 a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
35995 break;
35996 #ifdef HAVE_LONG_LONG
35997 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
35998 lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
35999 goto long_long;
36000 #endif
36001 }
36002 CYTHON_FALLTHROUGH;
36003 default: return PyLong_Type.tp_as_number->nb_add(op1, op2);
36004 }
36005 }
36006 x = a + b;
36007 return PyLong_FromLong(x);
36008 #ifdef HAVE_LONG_LONG
36009 long_long:
36010 llx = lla + llb;
36011 return PyLong_FromLongLong(llx);
36012 #endif
36013
36014
36015 }
36016 #endif
36017 if (PyFloat_CheckExact(op1)) {
36018 const long b = intval;
36019 double a = PyFloat_AS_DOUBLE(op1);
36020 double result;
36021 PyFPE_START_PROTECT("add", return NULL)
36022 result = ((double)a) + (double)b;
36023 PyFPE_END_PROTECT(result)
36024 return PyFloat_FromDouble(result);
36025 }
36026 return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2);
36027 }
36028 #endif
36029
36030 /* IterFinish */
__Pyx_IterFinish(void)36031 static CYTHON_INLINE int __Pyx_IterFinish(void) {
36032 #if CYTHON_FAST_THREAD_STATE
36033 PyThreadState *tstate = __Pyx_PyThreadState_Current;
36034 PyObject* exc_type = tstate->curexc_type;
36035 if (unlikely(exc_type)) {
36036 if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) {
36037 PyObject *exc_value, *exc_tb;
36038 exc_value = tstate->curexc_value;
36039 exc_tb = tstate->curexc_traceback;
36040 tstate->curexc_type = 0;
36041 tstate->curexc_value = 0;
36042 tstate->curexc_traceback = 0;
36043 Py_DECREF(exc_type);
36044 Py_XDECREF(exc_value);
36045 Py_XDECREF(exc_tb);
36046 return 0;
36047 } else {
36048 return -1;
36049 }
36050 }
36051 return 0;
36052 #else
36053 if (unlikely(PyErr_Occurred())) {
36054 if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
36055 PyErr_Clear();
36056 return 0;
36057 } else {
36058 return -1;
36059 }
36060 }
36061 return 0;
36062 #endif
36063 }
36064
36065 /* PyObjectCallMethO */
36066 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx_PyObject_CallMethO(PyObject * func,PyObject * arg)36067 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
36068 PyObject *self, *result;
36069 PyCFunction cfunc;
36070 cfunc = PyCFunction_GET_FUNCTION(func);
36071 self = PyCFunction_GET_SELF(func);
36072 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
36073 return NULL;
36074 result = cfunc(self, arg);
36075 Py_LeaveRecursiveCall();
36076 if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
36077 PyErr_SetString(
36078 PyExc_SystemError,
36079 "NULL result without error in PyObject_Call");
36080 }
36081 return result;
36082 }
36083 #endif
36084
36085 /* PyObjectCallNoArg */
36086 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx_PyObject_CallNoArg(PyObject * func)36087 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) {
36088 #if CYTHON_FAST_PYCALL
36089 if (PyFunction_Check(func)) {
36090 return __Pyx_PyFunction_FastCall(func, NULL, 0);
36091 }
36092 #endif
36093 #ifdef __Pyx_CyFunction_USED
36094 if (likely(PyCFunction_Check(func) || __Pyx_CyFunction_Check(func)))
36095 #else
36096 if (likely(PyCFunction_Check(func)))
36097 #endif
36098 {
36099 if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) {
36100 return __Pyx_PyObject_CallMethO(func, NULL);
36101 }
36102 }
36103 return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL);
36104 }
36105 #endif
36106
36107 /* PyObjectCallOneArg */
36108 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx__PyObject_CallOneArg(PyObject * func,PyObject * arg)36109 static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
36110 PyObject *result;
36111 PyObject *args = PyTuple_New(1);
36112 if (unlikely(!args)) return NULL;
36113 Py_INCREF(arg);
36114 PyTuple_SET_ITEM(args, 0, arg);
36115 result = __Pyx_PyObject_Call(func, args, NULL);
36116 Py_DECREF(args);
36117 return result;
36118 }
__Pyx_PyObject_CallOneArg(PyObject * func,PyObject * arg)36119 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
36120 #if CYTHON_FAST_PYCALL
36121 if (PyFunction_Check(func)) {
36122 return __Pyx_PyFunction_FastCall(func, &arg, 1);
36123 }
36124 #endif
36125 if (likely(PyCFunction_Check(func))) {
36126 if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
36127 return __Pyx_PyObject_CallMethO(func, arg);
36128 #if CYTHON_FAST_PYCCALL
36129 } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) {
36130 return __Pyx_PyCFunction_FastCall(func, &arg, 1);
36131 #endif
36132 }
36133 }
36134 return __Pyx__PyObject_CallOneArg(func, arg);
36135 }
36136 #else
__Pyx_PyObject_CallOneArg(PyObject * func,PyObject * arg)36137 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
36138 PyObject *result;
36139 PyObject *args = PyTuple_Pack(1, arg);
36140 if (unlikely(!args)) return NULL;
36141 result = __Pyx_PyObject_Call(func, args, NULL);
36142 Py_DECREF(args);
36143 return result;
36144 }
36145 #endif
36146
36147 /* PyObjectGetMethod */
__Pyx_PyObject_GetMethod(PyObject * obj,PyObject * name,PyObject ** method)36148 static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) {
36149 PyObject *attr;
36150 #if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP
36151 PyTypeObject *tp = Py_TYPE(obj);
36152 PyObject *descr;
36153 descrgetfunc f = NULL;
36154 PyObject **dictptr, *dict;
36155 int meth_found = 0;
36156 assert (*method == NULL);
36157 if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) {
36158 attr = __Pyx_PyObject_GetAttrStr(obj, name);
36159 goto try_unpack;
36160 }
36161 if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) {
36162 return 0;
36163 }
36164 descr = _PyType_Lookup(tp, name);
36165 if (likely(descr != NULL)) {
36166 Py_INCREF(descr);
36167 #if PY_MAJOR_VERSION >= 3
36168 #ifdef __Pyx_CyFunction_USED
36169 if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr)))
36170 #else
36171 if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type)))
36172 #endif
36173 #else
36174 #ifdef __Pyx_CyFunction_USED
36175 if (likely(PyFunction_Check(descr) || __Pyx_CyFunction_Check(descr)))
36176 #else
36177 if (likely(PyFunction_Check(descr)))
36178 #endif
36179 #endif
36180 {
36181 meth_found = 1;
36182 } else {
36183 f = Py_TYPE(descr)->tp_descr_get;
36184 if (f != NULL && PyDescr_IsData(descr)) {
36185 attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
36186 Py_DECREF(descr);
36187 goto try_unpack;
36188 }
36189 }
36190 }
36191 dictptr = _PyObject_GetDictPtr(obj);
36192 if (dictptr != NULL && (dict = *dictptr) != NULL) {
36193 Py_INCREF(dict);
36194 attr = __Pyx_PyDict_GetItemStr(dict, name);
36195 if (attr != NULL) {
36196 Py_INCREF(attr);
36197 Py_DECREF(dict);
36198 Py_XDECREF(descr);
36199 goto try_unpack;
36200 }
36201 Py_DECREF(dict);
36202 }
36203 if (meth_found) {
36204 *method = descr;
36205 return 1;
36206 }
36207 if (f != NULL) {
36208 attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
36209 Py_DECREF(descr);
36210 goto try_unpack;
36211 }
36212 if (descr != NULL) {
36213 *method = descr;
36214 return 0;
36215 }
36216 PyErr_Format(PyExc_AttributeError,
36217 #if PY_MAJOR_VERSION >= 3
36218 "'%.50s' object has no attribute '%U'",
36219 tp->tp_name, name);
36220 #else
36221 "'%.50s' object has no attribute '%.400s'",
36222 tp->tp_name, PyString_AS_STRING(name));
36223 #endif
36224 return 0;
36225 #else
36226 attr = __Pyx_PyObject_GetAttrStr(obj, name);
36227 goto try_unpack;
36228 #endif
36229 try_unpack:
36230 #if CYTHON_UNPACK_METHODS
36231 if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) {
36232 PyObject *function = PyMethod_GET_FUNCTION(attr);
36233 Py_INCREF(function);
36234 Py_DECREF(attr);
36235 *method = function;
36236 return 1;
36237 }
36238 #endif
36239 *method = attr;
36240 return 0;
36241 }
36242
36243 /* PyObjectCallMethod0 */
__Pyx_PyObject_CallMethod0(PyObject * obj,PyObject * method_name)36244 static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) {
36245 PyObject *method = NULL, *result = NULL;
36246 int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
36247 if (likely(is_method)) {
36248 result = __Pyx_PyObject_CallOneArg(method, obj);
36249 Py_DECREF(method);
36250 return result;
36251 }
36252 if (unlikely(!method)) goto bad;
36253 result = __Pyx_PyObject_CallNoArg(method);
36254 Py_DECREF(method);
36255 bad:
36256 return result;
36257 }
36258
36259 /* RaiseNeedMoreValuesToUnpack */
__Pyx_RaiseNeedMoreValuesError(Py_ssize_t index)36260 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
36261 PyErr_Format(PyExc_ValueError,
36262 "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
36263 index, (index == 1) ? "" : "s");
36264 }
36265
36266 /* RaiseTooManyValuesToUnpack */
__Pyx_RaiseTooManyValuesError(Py_ssize_t expected)36267 static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
36268 PyErr_Format(PyExc_ValueError,
36269 "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
36270 }
36271
36272 /* UnpackItemEndCheck */
__Pyx_IternextUnpackEndCheck(PyObject * retval,Py_ssize_t expected)36273 static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
36274 if (unlikely(retval)) {
36275 Py_DECREF(retval);
36276 __Pyx_RaiseTooManyValuesError(expected);
36277 return -1;
36278 } else {
36279 return __Pyx_IterFinish();
36280 }
36281 return 0;
36282 }
36283
36284 /* RaiseNoneIterError */
__Pyx_RaiseNoneNotIterableError(void)36285 static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
36286 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
36287 }
36288
36289 /* UnpackTupleError */
__Pyx_UnpackTupleError(PyObject * t,Py_ssize_t index)36290 static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) {
36291 if (t == Py_None) {
36292 __Pyx_RaiseNoneNotIterableError();
36293 } else if (PyTuple_GET_SIZE(t) < index) {
36294 __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(t));
36295 } else {
36296 __Pyx_RaiseTooManyValuesError(index);
36297 }
36298 }
36299
36300 /* UnpackTuple2 */
__Pyx_unpack_tuple2_exact(PyObject * tuple,PyObject ** pvalue1,PyObject ** pvalue2,int decref_tuple)36301 static CYTHON_INLINE int __Pyx_unpack_tuple2_exact(
36302 PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2, int decref_tuple) {
36303 PyObject *value1 = NULL, *value2 = NULL;
36304 #if CYTHON_COMPILING_IN_PYPY
36305 value1 = PySequence_ITEM(tuple, 0); if (unlikely(!value1)) goto bad;
36306 value2 = PySequence_ITEM(tuple, 1); if (unlikely(!value2)) goto bad;
36307 #else
36308 value1 = PyTuple_GET_ITEM(tuple, 0); Py_INCREF(value1);
36309 value2 = PyTuple_GET_ITEM(tuple, 1); Py_INCREF(value2);
36310 #endif
36311 if (decref_tuple) {
36312 Py_DECREF(tuple);
36313 }
36314 *pvalue1 = value1;
36315 *pvalue2 = value2;
36316 return 0;
36317 #if CYTHON_COMPILING_IN_PYPY
36318 bad:
36319 Py_XDECREF(value1);
36320 Py_XDECREF(value2);
36321 if (decref_tuple) { Py_XDECREF(tuple); }
36322 return -1;
36323 #endif
36324 }
__Pyx_unpack_tuple2_generic(PyObject * tuple,PyObject ** pvalue1,PyObject ** pvalue2,int has_known_size,int decref_tuple)36325 static int __Pyx_unpack_tuple2_generic(PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2,
36326 int has_known_size, int decref_tuple) {
36327 Py_ssize_t index;
36328 PyObject *value1 = NULL, *value2 = NULL, *iter = NULL;
36329 iternextfunc iternext;
36330 iter = PyObject_GetIter(tuple);
36331 if (unlikely(!iter)) goto bad;
36332 if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; }
36333 iternext = Py_TYPE(iter)->tp_iternext;
36334 value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; }
36335 value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; }
36336 if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad;
36337 Py_DECREF(iter);
36338 *pvalue1 = value1;
36339 *pvalue2 = value2;
36340 return 0;
36341 unpacking_failed:
36342 if (!has_known_size && __Pyx_IterFinish() == 0)
36343 __Pyx_RaiseNeedMoreValuesError(index);
36344 bad:
36345 Py_XDECREF(iter);
36346 Py_XDECREF(value1);
36347 Py_XDECREF(value2);
36348 if (decref_tuple) { Py_XDECREF(tuple); }
36349 return -1;
36350 }
36351
36352 /* dict_iter */
__Pyx_dict_iterator(PyObject * iterable,int is_dict,PyObject * method_name,Py_ssize_t * p_orig_length,int * p_source_is_dict)36353 static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name,
36354 Py_ssize_t* p_orig_length, int* p_source_is_dict) {
36355 is_dict = is_dict || likely(PyDict_CheckExact(iterable));
36356 *p_source_is_dict = is_dict;
36357 if (is_dict) {
36358 #if !CYTHON_COMPILING_IN_PYPY
36359 *p_orig_length = PyDict_Size(iterable);
36360 Py_INCREF(iterable);
36361 return iterable;
36362 #elif PY_MAJOR_VERSION >= 3
36363 static PyObject *py_items = NULL, *py_keys = NULL, *py_values = NULL;
36364 PyObject **pp = NULL;
36365 if (method_name) {
36366 const char *name = PyUnicode_AsUTF8(method_name);
36367 if (strcmp(name, "iteritems") == 0) pp = &py_items;
36368 else if (strcmp(name, "iterkeys") == 0) pp = &py_keys;
36369 else if (strcmp(name, "itervalues") == 0) pp = &py_values;
36370 if (pp) {
36371 if (!*pp) {
36372 *pp = PyUnicode_FromString(name + 4);
36373 if (!*pp)
36374 return NULL;
36375 }
36376 method_name = *pp;
36377 }
36378 }
36379 #endif
36380 }
36381 *p_orig_length = 0;
36382 if (method_name) {
36383 PyObject* iter;
36384 iterable = __Pyx_PyObject_CallMethod0(iterable, method_name);
36385 if (!iterable)
36386 return NULL;
36387 #if !CYTHON_COMPILING_IN_PYPY
36388 if (PyTuple_CheckExact(iterable) || PyList_CheckExact(iterable))
36389 return iterable;
36390 #endif
36391 iter = PyObject_GetIter(iterable);
36392 Py_DECREF(iterable);
36393 return iter;
36394 }
36395 return PyObject_GetIter(iterable);
36396 }
__Pyx_dict_iter_next(PyObject * iter_obj,CYTHON_NCP_UNUSED Py_ssize_t orig_length,CYTHON_NCP_UNUSED Py_ssize_t * ppos,PyObject ** pkey,PyObject ** pvalue,PyObject ** pitem,int source_is_dict)36397 static CYTHON_INLINE int __Pyx_dict_iter_next(
36398 PyObject* iter_obj, CYTHON_NCP_UNUSED Py_ssize_t orig_length, CYTHON_NCP_UNUSED Py_ssize_t* ppos,
36399 PyObject** pkey, PyObject** pvalue, PyObject** pitem, int source_is_dict) {
36400 PyObject* next_item;
36401 #if !CYTHON_COMPILING_IN_PYPY
36402 if (source_is_dict) {
36403 PyObject *key, *value;
36404 if (unlikely(orig_length != PyDict_Size(iter_obj))) {
36405 PyErr_SetString(PyExc_RuntimeError, "dictionary changed size during iteration");
36406 return -1;
36407 }
36408 if (unlikely(!PyDict_Next(iter_obj, ppos, &key, &value))) {
36409 return 0;
36410 }
36411 if (pitem) {
36412 PyObject* tuple = PyTuple_New(2);
36413 if (unlikely(!tuple)) {
36414 return -1;
36415 }
36416 Py_INCREF(key);
36417 Py_INCREF(value);
36418 PyTuple_SET_ITEM(tuple, 0, key);
36419 PyTuple_SET_ITEM(tuple, 1, value);
36420 *pitem = tuple;
36421 } else {
36422 if (pkey) {
36423 Py_INCREF(key);
36424 *pkey = key;
36425 }
36426 if (pvalue) {
36427 Py_INCREF(value);
36428 *pvalue = value;
36429 }
36430 }
36431 return 1;
36432 } else if (PyTuple_CheckExact(iter_obj)) {
36433 Py_ssize_t pos = *ppos;
36434 if (unlikely(pos >= PyTuple_GET_SIZE(iter_obj))) return 0;
36435 *ppos = pos + 1;
36436 next_item = PyTuple_GET_ITEM(iter_obj, pos);
36437 Py_INCREF(next_item);
36438 } else if (PyList_CheckExact(iter_obj)) {
36439 Py_ssize_t pos = *ppos;
36440 if (unlikely(pos >= PyList_GET_SIZE(iter_obj))) return 0;
36441 *ppos = pos + 1;
36442 next_item = PyList_GET_ITEM(iter_obj, pos);
36443 Py_INCREF(next_item);
36444 } else
36445 #endif
36446 {
36447 next_item = PyIter_Next(iter_obj);
36448 if (unlikely(!next_item)) {
36449 return __Pyx_IterFinish();
36450 }
36451 }
36452 if (pitem) {
36453 *pitem = next_item;
36454 } else if (pkey && pvalue) {
36455 if (__Pyx_unpack_tuple2(next_item, pkey, pvalue, source_is_dict, source_is_dict, 1))
36456 return -1;
36457 } else if (pkey) {
36458 *pkey = next_item;
36459 } else {
36460 *pvalue = next_item;
36461 }
36462 return 1;
36463 }
36464
36465 /* BytesEquals */
__Pyx_PyBytes_Equals(PyObject * s1,PyObject * s2,int equals)36466 static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
36467 #if CYTHON_COMPILING_IN_PYPY
36468 return PyObject_RichCompareBool(s1, s2, equals);
36469 #else
36470 if (s1 == s2) {
36471 return (equals == Py_EQ);
36472 } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
36473 const char *ps1, *ps2;
36474 Py_ssize_t length = PyBytes_GET_SIZE(s1);
36475 if (length != PyBytes_GET_SIZE(s2))
36476 return (equals == Py_NE);
36477 ps1 = PyBytes_AS_STRING(s1);
36478 ps2 = PyBytes_AS_STRING(s2);
36479 if (ps1[0] != ps2[0]) {
36480 return (equals == Py_NE);
36481 } else if (length == 1) {
36482 return (equals == Py_EQ);
36483 } else {
36484 int result;
36485 #if CYTHON_USE_UNICODE_INTERNALS
36486 Py_hash_t hash1, hash2;
36487 hash1 = ((PyBytesObject*)s1)->ob_shash;
36488 hash2 = ((PyBytesObject*)s2)->ob_shash;
36489 if (hash1 != hash2 && hash1 != -1 && hash2 != -1) {
36490 return (equals == Py_NE);
36491 }
36492 #endif
36493 result = memcmp(ps1, ps2, (size_t)length);
36494 return (equals == Py_EQ) ? (result == 0) : (result != 0);
36495 }
36496 } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
36497 return (equals == Py_NE);
36498 } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
36499 return (equals == Py_NE);
36500 } else {
36501 int result;
36502 PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
36503 if (!py_result)
36504 return -1;
36505 result = __Pyx_PyObject_IsTrue(py_result);
36506 Py_DECREF(py_result);
36507 return result;
36508 }
36509 #endif
36510 }
36511
36512 /* UnicodeEquals */
__Pyx_PyUnicode_Equals(PyObject * s1,PyObject * s2,int equals)36513 static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
36514 #if CYTHON_COMPILING_IN_PYPY
36515 return PyObject_RichCompareBool(s1, s2, equals);
36516 #else
36517 #if PY_MAJOR_VERSION < 3
36518 PyObject* owned_ref = NULL;
36519 #endif
36520 int s1_is_unicode, s2_is_unicode;
36521 if (s1 == s2) {
36522 goto return_eq;
36523 }
36524 s1_is_unicode = PyUnicode_CheckExact(s1);
36525 s2_is_unicode = PyUnicode_CheckExact(s2);
36526 #if PY_MAJOR_VERSION < 3
36527 if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) {
36528 owned_ref = PyUnicode_FromObject(s2);
36529 if (unlikely(!owned_ref))
36530 return -1;
36531 s2 = owned_ref;
36532 s2_is_unicode = 1;
36533 } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) {
36534 owned_ref = PyUnicode_FromObject(s1);
36535 if (unlikely(!owned_ref))
36536 return -1;
36537 s1 = owned_ref;
36538 s1_is_unicode = 1;
36539 } else if (((!s2_is_unicode) & (!s1_is_unicode))) {
36540 return __Pyx_PyBytes_Equals(s1, s2, equals);
36541 }
36542 #endif
36543 if (s1_is_unicode & s2_is_unicode) {
36544 Py_ssize_t length;
36545 int kind;
36546 void *data1, *data2;
36547 if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0))
36548 return -1;
36549 length = __Pyx_PyUnicode_GET_LENGTH(s1);
36550 if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) {
36551 goto return_ne;
36552 }
36553 #if CYTHON_USE_UNICODE_INTERNALS
36554 {
36555 Py_hash_t hash1, hash2;
36556 #if CYTHON_PEP393_ENABLED
36557 hash1 = ((PyASCIIObject*)s1)->hash;
36558 hash2 = ((PyASCIIObject*)s2)->hash;
36559 #else
36560 hash1 = ((PyUnicodeObject*)s1)->hash;
36561 hash2 = ((PyUnicodeObject*)s2)->hash;
36562 #endif
36563 if (hash1 != hash2 && hash1 != -1 && hash2 != -1) {
36564 goto return_ne;
36565 }
36566 }
36567 #endif
36568 kind = __Pyx_PyUnicode_KIND(s1);
36569 if (kind != __Pyx_PyUnicode_KIND(s2)) {
36570 goto return_ne;
36571 }
36572 data1 = __Pyx_PyUnicode_DATA(s1);
36573 data2 = __Pyx_PyUnicode_DATA(s2);
36574 if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) {
36575 goto return_ne;
36576 } else if (length == 1) {
36577 goto return_eq;
36578 } else {
36579 int result = memcmp(data1, data2, (size_t)(length * kind));
36580 #if PY_MAJOR_VERSION < 3
36581 Py_XDECREF(owned_ref);
36582 #endif
36583 return (equals == Py_EQ) ? (result == 0) : (result != 0);
36584 }
36585 } else if ((s1 == Py_None) & s2_is_unicode) {
36586 goto return_ne;
36587 } else if ((s2 == Py_None) & s1_is_unicode) {
36588 goto return_ne;
36589 } else {
36590 int result;
36591 PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
36592 #if PY_MAJOR_VERSION < 3
36593 Py_XDECREF(owned_ref);
36594 #endif
36595 if (!py_result)
36596 return -1;
36597 result = __Pyx_PyObject_IsTrue(py_result);
36598 Py_DECREF(py_result);
36599 return result;
36600 }
36601 return_eq:
36602 #if PY_MAJOR_VERSION < 3
36603 Py_XDECREF(owned_ref);
36604 #endif
36605 return (equals == Py_EQ);
36606 return_ne:
36607 #if PY_MAJOR_VERSION < 3
36608 Py_XDECREF(owned_ref);
36609 #endif
36610 return (equals == Py_NE);
36611 #endif
36612 }
36613
36614 /* RaiseException */
36615 #if PY_MAJOR_VERSION < 3
__Pyx_Raise(PyObject * type,PyObject * value,PyObject * tb,CYTHON_UNUSED PyObject * cause)36616 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
36617 CYTHON_UNUSED PyObject *cause) {
36618 __Pyx_PyThreadState_declare
36619 Py_XINCREF(type);
36620 if (!value || value == Py_None)
36621 value = NULL;
36622 else
36623 Py_INCREF(value);
36624 if (!tb || tb == Py_None)
36625 tb = NULL;
36626 else {
36627 Py_INCREF(tb);
36628 if (!PyTraceBack_Check(tb)) {
36629 PyErr_SetString(PyExc_TypeError,
36630 "raise: arg 3 must be a traceback or None");
36631 goto raise_error;
36632 }
36633 }
36634 if (PyType_Check(type)) {
36635 #if CYTHON_COMPILING_IN_PYPY
36636 if (!value) {
36637 Py_INCREF(Py_None);
36638 value = Py_None;
36639 }
36640 #endif
36641 PyErr_NormalizeException(&type, &value, &tb);
36642 } else {
36643 if (value) {
36644 PyErr_SetString(PyExc_TypeError,
36645 "instance exception may not have a separate value");
36646 goto raise_error;
36647 }
36648 value = type;
36649 type = (PyObject*) Py_TYPE(type);
36650 Py_INCREF(type);
36651 if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
36652 PyErr_SetString(PyExc_TypeError,
36653 "raise: exception class must be a subclass of BaseException");
36654 goto raise_error;
36655 }
36656 }
36657 __Pyx_PyThreadState_assign
36658 __Pyx_ErrRestore(type, value, tb);
36659 return;
36660 raise_error:
36661 Py_XDECREF(value);
36662 Py_XDECREF(type);
36663 Py_XDECREF(tb);
36664 return;
36665 }
36666 #else
__Pyx_Raise(PyObject * type,PyObject * value,PyObject * tb,PyObject * cause)36667 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
36668 PyObject* owned_instance = NULL;
36669 if (tb == Py_None) {
36670 tb = 0;
36671 } else if (tb && !PyTraceBack_Check(tb)) {
36672 PyErr_SetString(PyExc_TypeError,
36673 "raise: arg 3 must be a traceback or None");
36674 goto bad;
36675 }
36676 if (value == Py_None)
36677 value = 0;
36678 if (PyExceptionInstance_Check(type)) {
36679 if (value) {
36680 PyErr_SetString(PyExc_TypeError,
36681 "instance exception may not have a separate value");
36682 goto bad;
36683 }
36684 value = type;
36685 type = (PyObject*) Py_TYPE(value);
36686 } else if (PyExceptionClass_Check(type)) {
36687 PyObject *instance_class = NULL;
36688 if (value && PyExceptionInstance_Check(value)) {
36689 instance_class = (PyObject*) Py_TYPE(value);
36690 if (instance_class != type) {
36691 int is_subclass = PyObject_IsSubclass(instance_class, type);
36692 if (!is_subclass) {
36693 instance_class = NULL;
36694 } else if (unlikely(is_subclass == -1)) {
36695 goto bad;
36696 } else {
36697 type = instance_class;
36698 }
36699 }
36700 }
36701 if (!instance_class) {
36702 PyObject *args;
36703 if (!value)
36704 args = PyTuple_New(0);
36705 else if (PyTuple_Check(value)) {
36706 Py_INCREF(value);
36707 args = value;
36708 } else
36709 args = PyTuple_Pack(1, value);
36710 if (!args)
36711 goto bad;
36712 owned_instance = PyObject_Call(type, args, NULL);
36713 Py_DECREF(args);
36714 if (!owned_instance)
36715 goto bad;
36716 value = owned_instance;
36717 if (!PyExceptionInstance_Check(value)) {
36718 PyErr_Format(PyExc_TypeError,
36719 "calling %R should have returned an instance of "
36720 "BaseException, not %R",
36721 type, Py_TYPE(value));
36722 goto bad;
36723 }
36724 }
36725 } else {
36726 PyErr_SetString(PyExc_TypeError,
36727 "raise: exception class must be a subclass of BaseException");
36728 goto bad;
36729 }
36730 if (cause) {
36731 PyObject *fixed_cause;
36732 if (cause == Py_None) {
36733 fixed_cause = NULL;
36734 } else if (PyExceptionClass_Check(cause)) {
36735 fixed_cause = PyObject_CallObject(cause, NULL);
36736 if (fixed_cause == NULL)
36737 goto bad;
36738 } else if (PyExceptionInstance_Check(cause)) {
36739 fixed_cause = cause;
36740 Py_INCREF(fixed_cause);
36741 } else {
36742 PyErr_SetString(PyExc_TypeError,
36743 "exception causes must derive from "
36744 "BaseException");
36745 goto bad;
36746 }
36747 PyException_SetCause(value, fixed_cause);
36748 }
36749 PyErr_SetObject(type, value);
36750 if (tb) {
36751 #if CYTHON_COMPILING_IN_PYPY
36752 PyObject *tmp_type, *tmp_value, *tmp_tb;
36753 PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb);
36754 Py_INCREF(tb);
36755 PyErr_Restore(tmp_type, tmp_value, tb);
36756 Py_XDECREF(tmp_tb);
36757 #else
36758 PyThreadState *tstate = __Pyx_PyThreadState_Current;
36759 PyObject* tmp_tb = tstate->curexc_traceback;
36760 if (tb != tmp_tb) {
36761 Py_INCREF(tb);
36762 tstate->curexc_traceback = tb;
36763 Py_XDECREF(tmp_tb);
36764 }
36765 #endif
36766 }
36767 bad:
36768 Py_XDECREF(owned_instance);
36769 return;
36770 }
36771 #endif
36772
36773 /* set_iter */
__Pyx_set_iterator(PyObject * iterable,int is_set,Py_ssize_t * p_orig_length,int * p_source_is_set)36774 static CYTHON_INLINE PyObject* __Pyx_set_iterator(PyObject* iterable, int is_set,
36775 Py_ssize_t* p_orig_length, int* p_source_is_set) {
36776 #if CYTHON_COMPILING_IN_CPYTHON
36777 is_set = is_set || likely(PySet_CheckExact(iterable) || PyFrozenSet_CheckExact(iterable));
36778 *p_source_is_set = is_set;
36779 if (likely(is_set)) {
36780 *p_orig_length = PySet_Size(iterable);
36781 Py_INCREF(iterable);
36782 return iterable;
36783 }
36784 #else
36785 (void)is_set;
36786 *p_source_is_set = 0;
36787 #endif
36788 *p_orig_length = 0;
36789 return PyObject_GetIter(iterable);
36790 }
__Pyx_set_iter_next(PyObject * iter_obj,Py_ssize_t orig_length,Py_ssize_t * ppos,PyObject ** value,int source_is_set)36791 static CYTHON_INLINE int __Pyx_set_iter_next(
36792 PyObject* iter_obj, Py_ssize_t orig_length,
36793 Py_ssize_t* ppos, PyObject **value,
36794 int source_is_set) {
36795 if (!CYTHON_COMPILING_IN_CPYTHON || unlikely(!source_is_set)) {
36796 *value = PyIter_Next(iter_obj);
36797 if (unlikely(!*value)) {
36798 return __Pyx_IterFinish();
36799 }
36800 (void)orig_length;
36801 (void)ppos;
36802 return 1;
36803 }
36804 #if CYTHON_COMPILING_IN_CPYTHON
36805 if (unlikely(PySet_GET_SIZE(iter_obj) != orig_length)) {
36806 PyErr_SetString(
36807 PyExc_RuntimeError,
36808 "set changed size during iteration");
36809 return -1;
36810 }
36811 {
36812 Py_hash_t hash;
36813 int ret = _PySet_NextEntry(iter_obj, ppos, value, &hash);
36814 assert (ret != -1);
36815 if (likely(ret)) {
36816 Py_INCREF(*value);
36817 return 1;
36818 }
36819 }
36820 #endif
36821 return 0;
36822 }
36823
36824 /* DictGetItem */
36825 #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
__Pyx_PyDict_GetItem(PyObject * d,PyObject * key)36826 static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) {
36827 PyObject *value;
36828 value = PyDict_GetItemWithError(d, key);
36829 if (unlikely(!value)) {
36830 if (!PyErr_Occurred()) {
36831 if (unlikely(PyTuple_Check(key))) {
36832 PyObject* args = PyTuple_Pack(1, key);
36833 if (likely(args)) {
36834 PyErr_SetObject(PyExc_KeyError, args);
36835 Py_DECREF(args);
36836 }
36837 } else {
36838 PyErr_SetObject(PyExc_KeyError, key);
36839 }
36840 }
36841 return NULL;
36842 }
36843 Py_INCREF(value);
36844 return value;
36845 }
36846 #endif
36847
36848 /* ExtTypeTest */
__Pyx_TypeTest(PyObject * obj,PyTypeObject * type)36849 static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
36850 if (unlikely(!type)) {
36851 PyErr_SetString(PyExc_SystemError, "Missing type object");
36852 return 0;
36853 }
36854 if (likely(__Pyx_TypeCheck(obj, type)))
36855 return 1;
36856 PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
36857 Py_TYPE(obj)->tp_name, type->tp_name);
36858 return 0;
36859 }
36860
36861 /* IsLittleEndian */
__Pyx_Is_Little_Endian(void)36862 static CYTHON_INLINE int __Pyx_Is_Little_Endian(void)
36863 {
36864 union {
36865 uint32_t u32;
36866 uint8_t u8[4];
36867 } S;
36868 S.u32 = 0x01020304;
36869 return S.u8[0] == 4;
36870 }
36871
36872 /* BufferFormatCheck */
__Pyx_BufFmt_Init(__Pyx_BufFmt_Context * ctx,__Pyx_BufFmt_StackElem * stack,__Pyx_TypeInfo * type)36873 static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
36874 __Pyx_BufFmt_StackElem* stack,
36875 __Pyx_TypeInfo* type) {
36876 stack[0].field = &ctx->root;
36877 stack[0].parent_offset = 0;
36878 ctx->root.type = type;
36879 ctx->root.name = "buffer dtype";
36880 ctx->root.offset = 0;
36881 ctx->head = stack;
36882 ctx->head->field = &ctx->root;
36883 ctx->fmt_offset = 0;
36884 ctx->head->parent_offset = 0;
36885 ctx->new_packmode = '@';
36886 ctx->enc_packmode = '@';
36887 ctx->new_count = 1;
36888 ctx->enc_count = 0;
36889 ctx->enc_type = 0;
36890 ctx->is_complex = 0;
36891 ctx->is_valid_array = 0;
36892 ctx->struct_alignment = 0;
36893 while (type->typegroup == 'S') {
36894 ++ctx->head;
36895 ctx->head->field = type->fields;
36896 ctx->head->parent_offset = 0;
36897 type = type->fields->type;
36898 }
36899 }
__Pyx_BufFmt_ParseNumber(const char ** ts)36900 static int __Pyx_BufFmt_ParseNumber(const char** ts) {
36901 int count;
36902 const char* t = *ts;
36903 if (*t < '0' || *t > '9') {
36904 return -1;
36905 } else {
36906 count = *t++ - '0';
36907 while (*t >= '0' && *t <= '9') {
36908 count *= 10;
36909 count += *t++ - '0';
36910 }
36911 }
36912 *ts = t;
36913 return count;
36914 }
__Pyx_BufFmt_ExpectNumber(const char ** ts)36915 static int __Pyx_BufFmt_ExpectNumber(const char **ts) {
36916 int number = __Pyx_BufFmt_ParseNumber(ts);
36917 if (number == -1)
36918 PyErr_Format(PyExc_ValueError,\
36919 "Does not understand character buffer dtype format string ('%c')", **ts);
36920 return number;
36921 }
__Pyx_BufFmt_RaiseUnexpectedChar(char ch)36922 static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) {
36923 PyErr_Format(PyExc_ValueError,
36924 "Unexpected format string character: '%c'", ch);
36925 }
__Pyx_BufFmt_DescribeTypeChar(char ch,int is_complex)36926 static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) {
36927 switch (ch) {
36928 case '?': return "'bool'";
36929 case 'c': return "'char'";
36930 case 'b': return "'signed char'";
36931 case 'B': return "'unsigned char'";
36932 case 'h': return "'short'";
36933 case 'H': return "'unsigned short'";
36934 case 'i': return "'int'";
36935 case 'I': return "'unsigned int'";
36936 case 'l': return "'long'";
36937 case 'L': return "'unsigned long'";
36938 case 'q': return "'long long'";
36939 case 'Q': return "'unsigned long long'";
36940 case 'f': return (is_complex ? "'complex float'" : "'float'");
36941 case 'd': return (is_complex ? "'complex double'" : "'double'");
36942 case 'g': return (is_complex ? "'complex long double'" : "'long double'");
36943 case 'T': return "a struct";
36944 case 'O': return "Python object";
36945 case 'P': return "a pointer";
36946 case 's': case 'p': return "a string";
36947 case 0: return "end";
36948 default: return "unparseable format string";
36949 }
36950 }
__Pyx_BufFmt_TypeCharToStandardSize(char ch,int is_complex)36951 static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) {
36952 switch (ch) {
36953 case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
36954 case 'h': case 'H': return 2;
36955 case 'i': case 'I': case 'l': case 'L': return 4;
36956 case 'q': case 'Q': return 8;
36957 case 'f': return (is_complex ? 8 : 4);
36958 case 'd': return (is_complex ? 16 : 8);
36959 case 'g': {
36960 PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g')..");
36961 return 0;
36962 }
36963 case 'O': case 'P': return sizeof(void*);
36964 default:
36965 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
36966 return 0;
36967 }
36968 }
__Pyx_BufFmt_TypeCharToNativeSize(char ch,int is_complex)36969 static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) {
36970 switch (ch) {
36971 case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
36972 case 'h': case 'H': return sizeof(short);
36973 case 'i': case 'I': return sizeof(int);
36974 case 'l': case 'L': return sizeof(long);
36975 #ifdef HAVE_LONG_LONG
36976 case 'q': case 'Q': return sizeof(PY_LONG_LONG);
36977 #endif
36978 case 'f': return sizeof(float) * (is_complex ? 2 : 1);
36979 case 'd': return sizeof(double) * (is_complex ? 2 : 1);
36980 case 'g': return sizeof(long double) * (is_complex ? 2 : 1);
36981 case 'O': case 'P': return sizeof(void*);
36982 default: {
36983 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
36984 return 0;
36985 }
36986 }
36987 }
36988 typedef struct { char c; short x; } __Pyx_st_short;
36989 typedef struct { char c; int x; } __Pyx_st_int;
36990 typedef struct { char c; long x; } __Pyx_st_long;
36991 typedef struct { char c; float x; } __Pyx_st_float;
36992 typedef struct { char c; double x; } __Pyx_st_double;
36993 typedef struct { char c; long double x; } __Pyx_st_longdouble;
36994 typedef struct { char c; void *x; } __Pyx_st_void_p;
36995 #ifdef HAVE_LONG_LONG
36996 typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong;
36997 #endif
__Pyx_BufFmt_TypeCharToAlignment(char ch,CYTHON_UNUSED int is_complex)36998 static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) {
36999 switch (ch) {
37000 case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
37001 case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short);
37002 case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int);
37003 case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long);
37004 #ifdef HAVE_LONG_LONG
37005 case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG);
37006 #endif
37007 case 'f': return sizeof(__Pyx_st_float) - sizeof(float);
37008 case 'd': return sizeof(__Pyx_st_double) - sizeof(double);
37009 case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double);
37010 case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*);
37011 default:
37012 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
37013 return 0;
37014 }
37015 }
37016 /* These are for computing the padding at the end of the struct to align
37017 on the first member of the struct. This will probably the same as above,
37018 but we don't have any guarantees.
37019 */
37020 typedef struct { short x; char c; } __Pyx_pad_short;
37021 typedef struct { int x; char c; } __Pyx_pad_int;
37022 typedef struct { long x; char c; } __Pyx_pad_long;
37023 typedef struct { float x; char c; } __Pyx_pad_float;
37024 typedef struct { double x; char c; } __Pyx_pad_double;
37025 typedef struct { long double x; char c; } __Pyx_pad_longdouble;
37026 typedef struct { void *x; char c; } __Pyx_pad_void_p;
37027 #ifdef HAVE_LONG_LONG
37028 typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong;
37029 #endif
__Pyx_BufFmt_TypeCharToPadding(char ch,CYTHON_UNUSED int is_complex)37030 static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) {
37031 switch (ch) {
37032 case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
37033 case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short);
37034 case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int);
37035 case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long);
37036 #ifdef HAVE_LONG_LONG
37037 case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG);
37038 #endif
37039 case 'f': return sizeof(__Pyx_pad_float) - sizeof(float);
37040 case 'd': return sizeof(__Pyx_pad_double) - sizeof(double);
37041 case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double);
37042 case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*);
37043 default:
37044 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
37045 return 0;
37046 }
37047 }
__Pyx_BufFmt_TypeCharToGroup(char ch,int is_complex)37048 static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) {
37049 switch (ch) {
37050 case 'c':
37051 return 'H';
37052 case 'b': case 'h': case 'i':
37053 case 'l': case 'q': case 's': case 'p':
37054 return 'I';
37055 case '?': case 'B': case 'H': case 'I': case 'L': case 'Q':
37056 return 'U';
37057 case 'f': case 'd': case 'g':
37058 return (is_complex ? 'C' : 'R');
37059 case 'O':
37060 return 'O';
37061 case 'P':
37062 return 'P';
37063 default: {
37064 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
37065 return 0;
37066 }
37067 }
37068 }
__Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context * ctx)37069 static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) {
37070 if (ctx->head == NULL || ctx->head->field == &ctx->root) {
37071 const char* expected;
37072 const char* quote;
37073 if (ctx->head == NULL) {
37074 expected = "end";
37075 quote = "";
37076 } else {
37077 expected = ctx->head->field->type->name;
37078 quote = "'";
37079 }
37080 PyErr_Format(PyExc_ValueError,
37081 "Buffer dtype mismatch, expected %s%s%s but got %s",
37082 quote, expected, quote,
37083 __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex));
37084 } else {
37085 __Pyx_StructField* field = ctx->head->field;
37086 __Pyx_StructField* parent = (ctx->head - 1)->field;
37087 PyErr_Format(PyExc_ValueError,
37088 "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'",
37089 field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex),
37090 parent->type->name, field->name);
37091 }
37092 }
__Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context * ctx)37093 static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) {
37094 char group;
37095 size_t size, offset, arraysize = 1;
37096 if (ctx->enc_type == 0) return 0;
37097 if (ctx->head->field->type->arraysize[0]) {
37098 int i, ndim = 0;
37099 if (ctx->enc_type == 's' || ctx->enc_type == 'p') {
37100 ctx->is_valid_array = ctx->head->field->type->ndim == 1;
37101 ndim = 1;
37102 if (ctx->enc_count != ctx->head->field->type->arraysize[0]) {
37103 PyErr_Format(PyExc_ValueError,
37104 "Expected a dimension of size %zu, got %zu",
37105 ctx->head->field->type->arraysize[0], ctx->enc_count);
37106 return -1;
37107 }
37108 }
37109 if (!ctx->is_valid_array) {
37110 PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d",
37111 ctx->head->field->type->ndim, ndim);
37112 return -1;
37113 }
37114 for (i = 0; i < ctx->head->field->type->ndim; i++) {
37115 arraysize *= ctx->head->field->type->arraysize[i];
37116 }
37117 ctx->is_valid_array = 0;
37118 ctx->enc_count = 1;
37119 }
37120 group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex);
37121 do {
37122 __Pyx_StructField* field = ctx->head->field;
37123 __Pyx_TypeInfo* type = field->type;
37124 if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') {
37125 size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex);
37126 } else {
37127 size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex);
37128 }
37129 if (ctx->enc_packmode == '@') {
37130 size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex);
37131 size_t align_mod_offset;
37132 if (align_at == 0) return -1;
37133 align_mod_offset = ctx->fmt_offset % align_at;
37134 if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset;
37135 if (ctx->struct_alignment == 0)
37136 ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type,
37137 ctx->is_complex);
37138 }
37139 if (type->size != size || type->typegroup != group) {
37140 if (type->typegroup == 'C' && type->fields != NULL) {
37141 size_t parent_offset = ctx->head->parent_offset + field->offset;
37142 ++ctx->head;
37143 ctx->head->field = type->fields;
37144 ctx->head->parent_offset = parent_offset;
37145 continue;
37146 }
37147 if ((type->typegroup == 'H' || group == 'H') && type->size == size) {
37148 } else {
37149 __Pyx_BufFmt_RaiseExpected(ctx);
37150 return -1;
37151 }
37152 }
37153 offset = ctx->head->parent_offset + field->offset;
37154 if (ctx->fmt_offset != offset) {
37155 PyErr_Format(PyExc_ValueError,
37156 "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected",
37157 (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset);
37158 return -1;
37159 }
37160 ctx->fmt_offset += size;
37161 if (arraysize)
37162 ctx->fmt_offset += (arraysize - 1) * size;
37163 --ctx->enc_count;
37164 while (1) {
37165 if (field == &ctx->root) {
37166 ctx->head = NULL;
37167 if (ctx->enc_count != 0) {
37168 __Pyx_BufFmt_RaiseExpected(ctx);
37169 return -1;
37170 }
37171 break;
37172 }
37173 ctx->head->field = ++field;
37174 if (field->type == NULL) {
37175 --ctx->head;
37176 field = ctx->head->field;
37177 continue;
37178 } else if (field->type->typegroup == 'S') {
37179 size_t parent_offset = ctx->head->parent_offset + field->offset;
37180 if (field->type->fields->type == NULL) continue;
37181 field = field->type->fields;
37182 ++ctx->head;
37183 ctx->head->field = field;
37184 ctx->head->parent_offset = parent_offset;
37185 break;
37186 } else {
37187 break;
37188 }
37189 }
37190 } while (ctx->enc_count);
37191 ctx->enc_type = 0;
37192 ctx->is_complex = 0;
37193 return 0;
37194 }
37195 static PyObject *
__pyx_buffmt_parse_array(__Pyx_BufFmt_Context * ctx,const char ** tsp)37196 __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp)
37197 {
37198 const char *ts = *tsp;
37199 int i = 0, number;
37200 int ndim = ctx->head->field->type->ndim;
37201 ;
37202 ++ts;
37203 if (ctx->new_count != 1) {
37204 PyErr_SetString(PyExc_ValueError,
37205 "Cannot handle repeated arrays in format string");
37206 return NULL;
37207 }
37208 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
37209 while (*ts && *ts != ')') {
37210 switch (*ts) {
37211 case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue;
37212 default: break;
37213 }
37214 number = __Pyx_BufFmt_ExpectNumber(&ts);
37215 if (number == -1) return NULL;
37216 if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i])
37217 return PyErr_Format(PyExc_ValueError,
37218 "Expected a dimension of size %zu, got %d",
37219 ctx->head->field->type->arraysize[i], number);
37220 if (*ts != ',' && *ts != ')')
37221 return PyErr_Format(PyExc_ValueError,
37222 "Expected a comma in format string, got '%c'", *ts);
37223 if (*ts == ',') ts++;
37224 i++;
37225 }
37226 if (i != ndim)
37227 return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d",
37228 ctx->head->field->type->ndim, i);
37229 if (!*ts) {
37230 PyErr_SetString(PyExc_ValueError,
37231 "Unexpected end of format string, expected ')'");
37232 return NULL;
37233 }
37234 ctx->is_valid_array = 1;
37235 ctx->new_count = 1;
37236 *tsp = ++ts;
37237 return Py_None;
37238 }
__Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context * ctx,const char * ts)37239 static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) {
37240 int got_Z = 0;
37241 while (1) {
37242 switch(*ts) {
37243 case 0:
37244 if (ctx->enc_type != 0 && ctx->head == NULL) {
37245 __Pyx_BufFmt_RaiseExpected(ctx);
37246 return NULL;
37247 }
37248 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
37249 if (ctx->head != NULL) {
37250 __Pyx_BufFmt_RaiseExpected(ctx);
37251 return NULL;
37252 }
37253 return ts;
37254 case ' ':
37255 case '\r':
37256 case '\n':
37257 ++ts;
37258 break;
37259 case '<':
37260 if (!__Pyx_Is_Little_Endian()) {
37261 PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler");
37262 return NULL;
37263 }
37264 ctx->new_packmode = '=';
37265 ++ts;
37266 break;
37267 case '>':
37268 case '!':
37269 if (__Pyx_Is_Little_Endian()) {
37270 PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler");
37271 return NULL;
37272 }
37273 ctx->new_packmode = '=';
37274 ++ts;
37275 break;
37276 case '=':
37277 case '@':
37278 case '^':
37279 ctx->new_packmode = *ts++;
37280 break;
37281 case 'T':
37282 {
37283 const char* ts_after_sub;
37284 size_t i, struct_count = ctx->new_count;
37285 size_t struct_alignment = ctx->struct_alignment;
37286 ctx->new_count = 1;
37287 ++ts;
37288 if (*ts != '{') {
37289 PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'");
37290 return NULL;
37291 }
37292 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
37293 ctx->enc_type = 0;
37294 ctx->enc_count = 0;
37295 ctx->struct_alignment = 0;
37296 ++ts;
37297 ts_after_sub = ts;
37298 for (i = 0; i != struct_count; ++i) {
37299 ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts);
37300 if (!ts_after_sub) return NULL;
37301 }
37302 ts = ts_after_sub;
37303 if (struct_alignment) ctx->struct_alignment = struct_alignment;
37304 }
37305 break;
37306 case '}':
37307 {
37308 size_t alignment = ctx->struct_alignment;
37309 ++ts;
37310 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
37311 ctx->enc_type = 0;
37312 if (alignment && ctx->fmt_offset % alignment) {
37313 ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment);
37314 }
37315 }
37316 return ts;
37317 case 'x':
37318 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
37319 ctx->fmt_offset += ctx->new_count;
37320 ctx->new_count = 1;
37321 ctx->enc_count = 0;
37322 ctx->enc_type = 0;
37323 ctx->enc_packmode = ctx->new_packmode;
37324 ++ts;
37325 break;
37326 case 'Z':
37327 got_Z = 1;
37328 ++ts;
37329 if (*ts != 'f' && *ts != 'd' && *ts != 'g') {
37330 __Pyx_BufFmt_RaiseUnexpectedChar('Z');
37331 return NULL;
37332 }
37333 CYTHON_FALLTHROUGH;
37334 case '?': case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I':
37335 case 'l': case 'L': case 'q': case 'Q':
37336 case 'f': case 'd': case 'g':
37337 case 'O': case 'p':
37338 if (ctx->enc_type == *ts && got_Z == ctx->is_complex &&
37339 ctx->enc_packmode == ctx->new_packmode) {
37340 ctx->enc_count += ctx->new_count;
37341 ctx->new_count = 1;
37342 got_Z = 0;
37343 ++ts;
37344 break;
37345 }
37346 CYTHON_FALLTHROUGH;
37347 case 's':
37348 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
37349 ctx->enc_count = ctx->new_count;
37350 ctx->enc_packmode = ctx->new_packmode;
37351 ctx->enc_type = *ts;
37352 ctx->is_complex = got_Z;
37353 ++ts;
37354 ctx->new_count = 1;
37355 got_Z = 0;
37356 break;
37357 case ':':
37358 ++ts;
37359 while(*ts != ':') ++ts;
37360 ++ts;
37361 break;
37362 case '(':
37363 if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL;
37364 break;
37365 default:
37366 {
37367 int number = __Pyx_BufFmt_ExpectNumber(&ts);
37368 if (number == -1) return NULL;
37369 ctx->new_count = (size_t)number;
37370 }
37371 }
37372 }
37373 }
37374
37375 /* BufferGetAndValidate */
__Pyx_SafeReleaseBuffer(Py_buffer * info)37376 static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) {
37377 if (unlikely(info->buf == NULL)) return;
37378 if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL;
37379 __Pyx_ReleaseBuffer(info);
37380 }
__Pyx_ZeroBuffer(Py_buffer * buf)37381 static void __Pyx_ZeroBuffer(Py_buffer* buf) {
37382 buf->buf = NULL;
37383 buf->obj = NULL;
37384 buf->strides = __Pyx_zeros;
37385 buf->shape = __Pyx_zeros;
37386 buf->suboffsets = __Pyx_minusones;
37387 }
__Pyx__GetBufferAndValidate(Py_buffer * buf,PyObject * obj,__Pyx_TypeInfo * dtype,int flags,int nd,int cast,__Pyx_BufFmt_StackElem * stack)37388 static int __Pyx__GetBufferAndValidate(
37389 Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags,
37390 int nd, int cast, __Pyx_BufFmt_StackElem* stack)
37391 {
37392 buf->buf = NULL;
37393 if (unlikely(__Pyx_GetBuffer(obj, buf, flags) == -1)) {
37394 __Pyx_ZeroBuffer(buf);
37395 return -1;
37396 }
37397 if (unlikely(buf->ndim != nd)) {
37398 PyErr_Format(PyExc_ValueError,
37399 "Buffer has wrong number of dimensions (expected %d, got %d)",
37400 nd, buf->ndim);
37401 goto fail;
37402 }
37403 if (!cast) {
37404 __Pyx_BufFmt_Context ctx;
37405 __Pyx_BufFmt_Init(&ctx, stack, dtype);
37406 if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
37407 }
37408 if (unlikely((size_t)buf->itemsize != dtype->size)) {
37409 PyErr_Format(PyExc_ValueError,
37410 "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)",
37411 buf->itemsize, (buf->itemsize > 1) ? "s" : "",
37412 dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : "");
37413 goto fail;
37414 }
37415 if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones;
37416 return 0;
37417 fail:;
37418 __Pyx_SafeReleaseBuffer(buf);
37419 return -1;
37420 }
37421
37422 /* BufferFallbackError */
__Pyx_RaiseBufferFallbackError(void)37423 static void __Pyx_RaiseBufferFallbackError(void) {
37424 PyErr_SetString(PyExc_ValueError,
37425 "Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!");
37426 }
37427
37428 /* decode_c_bytes */
__Pyx_decode_c_bytes(const char * cstring,Py_ssize_t length,Py_ssize_t start,Py_ssize_t stop,const char * encoding,const char * errors,PyObject * (* decode_func)(const char * s,Py_ssize_t size,const char * errors))37429 static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes(
37430 const char* cstring, Py_ssize_t length, Py_ssize_t start, Py_ssize_t stop,
37431 const char* encoding, const char* errors,
37432 PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) {
37433 if (unlikely((start < 0) | (stop < 0))) {
37434 if (start < 0) {
37435 start += length;
37436 if (start < 0)
37437 start = 0;
37438 }
37439 if (stop < 0)
37440 stop += length;
37441 }
37442 if (stop > length)
37443 stop = length;
37444 length = stop - start;
37445 if (unlikely(length <= 0))
37446 return PyUnicode_FromUnicode(NULL, 0);
37447 cstring += start;
37448 if (decode_func) {
37449 return decode_func(cstring, length, errors);
37450 } else {
37451 return PyUnicode_Decode(cstring, length, encoding, errors);
37452 }
37453 }
37454
37455 /* PyObjectFormat */
37456 #if CYTHON_USE_UNICODE_WRITER
__Pyx_PyObject_Format(PyObject * obj,PyObject * format_spec)37457 static PyObject* __Pyx_PyObject_Format(PyObject* obj, PyObject* format_spec) {
37458 int ret;
37459 _PyUnicodeWriter writer;
37460 if (likely(PyFloat_CheckExact(obj))) {
37461 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x03040000
37462 _PyUnicodeWriter_Init(&writer, 0);
37463 #else
37464 _PyUnicodeWriter_Init(&writer);
37465 #endif
37466 ret = _PyFloat_FormatAdvancedWriter(
37467 &writer,
37468 obj,
37469 format_spec, 0, PyUnicode_GET_LENGTH(format_spec));
37470 } else if (likely(PyLong_CheckExact(obj))) {
37471 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x03040000
37472 _PyUnicodeWriter_Init(&writer, 0);
37473 #else
37474 _PyUnicodeWriter_Init(&writer);
37475 #endif
37476 ret = _PyLong_FormatAdvancedWriter(
37477 &writer,
37478 obj,
37479 format_spec, 0, PyUnicode_GET_LENGTH(format_spec));
37480 } else {
37481 return PyObject_Format(obj, format_spec);
37482 }
37483 if (unlikely(ret == -1)) {
37484 _PyUnicodeWriter_Dealloc(&writer);
37485 return NULL;
37486 }
37487 return _PyUnicodeWriter_Finish(&writer);
37488 }
37489 #endif
37490
37491 /* BufferIndexError */
__Pyx_RaiseBufferIndexError(int axis)37492 static void __Pyx_RaiseBufferIndexError(int axis) {
37493 PyErr_Format(PyExc_IndexError,
37494 "Out of bounds on buffer access (axis %d)", axis);
37495 }
37496
37497 /* JoinPyUnicode */
__Pyx_PyUnicode_Join(PyObject * value_tuple,Py_ssize_t value_count,Py_ssize_t result_ulength,CYTHON_UNUSED Py_UCS4 max_char)37498 static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength,
37499 CYTHON_UNUSED Py_UCS4 max_char) {
37500 #if CYTHON_USE_UNICODE_INTERNALS && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
37501 PyObject *result_uval;
37502 int result_ukind;
37503 Py_ssize_t i, char_pos;
37504 void *result_udata;
37505 #if CYTHON_PEP393_ENABLED
37506 result_uval = PyUnicode_New(result_ulength, max_char);
37507 if (unlikely(!result_uval)) return NULL;
37508 result_ukind = (max_char <= 255) ? PyUnicode_1BYTE_KIND : (max_char <= 65535) ? PyUnicode_2BYTE_KIND : PyUnicode_4BYTE_KIND;
37509 result_udata = PyUnicode_DATA(result_uval);
37510 #else
37511 result_uval = PyUnicode_FromUnicode(NULL, result_ulength);
37512 if (unlikely(!result_uval)) return NULL;
37513 result_ukind = sizeof(Py_UNICODE);
37514 result_udata = PyUnicode_AS_UNICODE(result_uval);
37515 #endif
37516 char_pos = 0;
37517 for (i=0; i < value_count; i++) {
37518 int ukind;
37519 Py_ssize_t ulength;
37520 void *udata;
37521 PyObject *uval = PyTuple_GET_ITEM(value_tuple, i);
37522 if (unlikely(__Pyx_PyUnicode_READY(uval)))
37523 goto bad;
37524 ulength = __Pyx_PyUnicode_GET_LENGTH(uval);
37525 if (unlikely(!ulength))
37526 continue;
37527 if (unlikely(char_pos + ulength < 0))
37528 goto overflow;
37529 ukind = __Pyx_PyUnicode_KIND(uval);
37530 udata = __Pyx_PyUnicode_DATA(uval);
37531 if (!CYTHON_PEP393_ENABLED || ukind == result_ukind) {
37532 memcpy((char *)result_udata + char_pos * result_ukind, udata, (size_t) (ulength * result_ukind));
37533 } else {
37534 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030300F0 || defined(_PyUnicode_FastCopyCharacters)
37535 _PyUnicode_FastCopyCharacters(result_uval, char_pos, uval, 0, ulength);
37536 #else
37537 Py_ssize_t j;
37538 for (j=0; j < ulength; j++) {
37539 Py_UCS4 uchar = __Pyx_PyUnicode_READ(ukind, udata, j);
37540 __Pyx_PyUnicode_WRITE(result_ukind, result_udata, char_pos+j, uchar);
37541 }
37542 #endif
37543 }
37544 char_pos += ulength;
37545 }
37546 return result_uval;
37547 overflow:
37548 PyErr_SetString(PyExc_OverflowError, "join() result is too long for a Python string");
37549 bad:
37550 Py_DECREF(result_uval);
37551 return NULL;
37552 #else
37553 result_ulength++;
37554 value_count++;
37555 return PyUnicode_Join(__pyx_empty_unicode, value_tuple);
37556 #endif
37557 }
37558
37559 /* PyObjectCall2Args */
__Pyx_PyObject_Call2Args(PyObject * function,PyObject * arg1,PyObject * arg2)37560 static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) {
37561 PyObject *args, *result = NULL;
37562 #if CYTHON_FAST_PYCALL
37563 if (PyFunction_Check(function)) {
37564 PyObject *args[2] = {arg1, arg2};
37565 return __Pyx_PyFunction_FastCall(function, args, 2);
37566 }
37567 #endif
37568 #if CYTHON_FAST_PYCCALL
37569 if (__Pyx_PyFastCFunction_Check(function)) {
37570 PyObject *args[2] = {arg1, arg2};
37571 return __Pyx_PyCFunction_FastCall(function, args, 2);
37572 }
37573 #endif
37574 args = PyTuple_New(2);
37575 if (unlikely(!args)) goto done;
37576 Py_INCREF(arg1);
37577 PyTuple_SET_ITEM(args, 0, arg1);
37578 Py_INCREF(arg2);
37579 PyTuple_SET_ITEM(args, 1, arg2);
37580 Py_INCREF(function);
37581 result = __Pyx_PyObject_Call(function, args, NULL);
37582 Py_DECREF(args);
37583 Py_DECREF(function);
37584 done:
37585 return result;
37586 }
37587
37588 /* UnpackUnboundCMethod */
__Pyx_TryUnpackUnboundCMethod(__Pyx_CachedCFunction * target)37589 static int __Pyx_TryUnpackUnboundCMethod(__Pyx_CachedCFunction* target) {
37590 PyObject *method;
37591 method = __Pyx_PyObject_GetAttrStr(target->type, *target->method_name);
37592 if (unlikely(!method))
37593 return -1;
37594 target->method = method;
37595 #if CYTHON_COMPILING_IN_CPYTHON
37596 #if PY_MAJOR_VERSION >= 3
37597 if (likely(__Pyx_TypeCheck(method, &PyMethodDescr_Type)))
37598 #endif
37599 {
37600 PyMethodDescrObject *descr = (PyMethodDescrObject*) method;
37601 target->func = descr->d_method->ml_meth;
37602 target->flag = descr->d_method->ml_flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_STACKLESS);
37603 }
37604 #endif
37605 return 0;
37606 }
37607
37608 /* CallUnboundCMethod1 */
37609 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx_CallUnboundCMethod1(__Pyx_CachedCFunction * cfunc,PyObject * self,PyObject * arg)37610 static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg) {
37611 if (likely(cfunc->func)) {
37612 int flag = cfunc->flag;
37613 if (flag == METH_O) {
37614 return (*(cfunc->func))(self, arg);
37615 } else if (PY_VERSION_HEX >= 0x030600B1 && flag == METH_FASTCALL) {
37616 if (PY_VERSION_HEX >= 0x030700A0) {
37617 return (*(__Pyx_PyCFunctionFast)(void*)(PyCFunction)cfunc->func)(self, &arg, 1);
37618 } else {
37619 return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, &arg, 1, NULL);
37620 }
37621 } else if (PY_VERSION_HEX >= 0x030700A0 && flag == (METH_FASTCALL | METH_KEYWORDS)) {
37622 return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, &arg, 1, NULL);
37623 }
37624 }
37625 return __Pyx__CallUnboundCMethod1(cfunc, self, arg);
37626 }
37627 #endif
__Pyx__CallUnboundCMethod1(__Pyx_CachedCFunction * cfunc,PyObject * self,PyObject * arg)37628 static PyObject* __Pyx__CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg){
37629 PyObject *args, *result = NULL;
37630 if (unlikely(!cfunc->func && !cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL;
37631 #if CYTHON_COMPILING_IN_CPYTHON
37632 if (cfunc->func && (cfunc->flag & METH_VARARGS)) {
37633 args = PyTuple_New(1);
37634 if (unlikely(!args)) goto bad;
37635 Py_INCREF(arg);
37636 PyTuple_SET_ITEM(args, 0, arg);
37637 if (cfunc->flag & METH_KEYWORDS)
37638 result = (*(PyCFunctionWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, NULL);
37639 else
37640 result = (*cfunc->func)(self, args);
37641 } else {
37642 args = PyTuple_New(2);
37643 if (unlikely(!args)) goto bad;
37644 Py_INCREF(self);
37645 PyTuple_SET_ITEM(args, 0, self);
37646 Py_INCREF(arg);
37647 PyTuple_SET_ITEM(args, 1, arg);
37648 result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
37649 }
37650 #else
37651 args = PyTuple_Pack(2, self, arg);
37652 if (unlikely(!args)) goto bad;
37653 result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
37654 #endif
37655 bad:
37656 Py_XDECREF(args);
37657 return result;
37658 }
37659
37660 /* CallUnboundCMethod0 */
__Pyx__CallUnboundCMethod0(__Pyx_CachedCFunction * cfunc,PyObject * self)37661 static PyObject* __Pyx__CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self) {
37662 PyObject *args, *result = NULL;
37663 if (unlikely(!cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL;
37664 #if CYTHON_ASSUME_SAFE_MACROS
37665 args = PyTuple_New(1);
37666 if (unlikely(!args)) goto bad;
37667 Py_INCREF(self);
37668 PyTuple_SET_ITEM(args, 0, self);
37669 #else
37670 args = PyTuple_Pack(1, self);
37671 if (unlikely(!args)) goto bad;
37672 #endif
37673 result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
37674 Py_DECREF(args);
37675 bad:
37676 return result;
37677 }
37678
37679 /* py_dict_keys */
__Pyx_PyDict_Keys(PyObject * d)37680 static CYTHON_INLINE PyObject* __Pyx_PyDict_Keys(PyObject* d) {
37681 if (PY_MAJOR_VERSION >= 3)
37682 return __Pyx_CallUnboundCMethod0(&__pyx_umethod_PyDict_Type_keys, d);
37683 else
37684 return PyDict_Keys(d);
37685 }
37686
37687 /* py_dict_values */
__Pyx_PyDict_Values(PyObject * d)37688 static CYTHON_INLINE PyObject* __Pyx_PyDict_Values(PyObject* d) {
37689 if (PY_MAJOR_VERSION >= 3)
37690 return __Pyx_CallUnboundCMethod0(&__pyx_umethod_PyDict_Type_values, d);
37691 else
37692 return PyDict_Values(d);
37693 }
37694
37695 /* PyObjectFormatAndDecref */
__Pyx_PyObject_FormatSimpleAndDecref(PyObject * s,PyObject * f)37696 static CYTHON_INLINE PyObject* __Pyx_PyObject_FormatSimpleAndDecref(PyObject* s, PyObject* f) {
37697 if (unlikely(!s)) return NULL;
37698 if (likely(PyUnicode_CheckExact(s))) return s;
37699 #if PY_MAJOR_VERSION < 3
37700 if (likely(PyString_CheckExact(s))) {
37701 PyObject *result = PyUnicode_FromEncodedObject(s, NULL, "strict");
37702 Py_DECREF(s);
37703 return result;
37704 }
37705 #endif
37706 return __Pyx_PyObject_FormatAndDecref(s, f);
37707 }
__Pyx_PyObject_FormatAndDecref(PyObject * s,PyObject * f)37708 static CYTHON_INLINE PyObject* __Pyx_PyObject_FormatAndDecref(PyObject* s, PyObject* f) {
37709 PyObject *result = PyObject_Format(s, f);
37710 Py_DECREF(s);
37711 return result;
37712 }
37713
37714 /* PyUnicode_Unicode */
__Pyx_PyUnicode_Unicode(PyObject * obj)37715 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Unicode(PyObject *obj) {
37716 if (unlikely(obj == Py_None))
37717 obj = __pyx_kp_u_None;
37718 return __Pyx_NewRef(obj);
37719 }
37720
37721 /* PyIntCompare */
__Pyx_PyInt_EqObjC(PyObject * op1,PyObject * op2,CYTHON_UNUSED long intval,CYTHON_UNUSED long inplace)37722 static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED long inplace) {
37723 if (op1 == op2) {
37724 Py_RETURN_TRUE;
37725 }
37726 #if PY_MAJOR_VERSION < 3
37727 if (likely(PyInt_CheckExact(op1))) {
37728 const long b = intval;
37729 long a = PyInt_AS_LONG(op1);
37730 if (a == b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
37731 }
37732 #endif
37733 #if CYTHON_USE_PYLONG_INTERNALS
37734 if (likely(PyLong_CheckExact(op1))) {
37735 int unequal;
37736 unsigned long uintval;
37737 Py_ssize_t size = Py_SIZE(op1);
37738 const digit* digits = ((PyLongObject*)op1)->ob_digit;
37739 if (intval == 0) {
37740 if (size == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
37741 } else if (intval < 0) {
37742 if (size >= 0)
37743 Py_RETURN_FALSE;
37744 intval = -intval;
37745 size = -size;
37746 } else {
37747 if (size <= 0)
37748 Py_RETURN_FALSE;
37749 }
37750 uintval = (unsigned long) intval;
37751 #if PyLong_SHIFT * 4 < SIZEOF_LONG*8
37752 if (uintval >> (PyLong_SHIFT * 4)) {
37753 unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
37754 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
37755 } else
37756 #endif
37757 #if PyLong_SHIFT * 3 < SIZEOF_LONG*8
37758 if (uintval >> (PyLong_SHIFT * 3)) {
37759 unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
37760 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
37761 } else
37762 #endif
37763 #if PyLong_SHIFT * 2 < SIZEOF_LONG*8
37764 if (uintval >> (PyLong_SHIFT * 2)) {
37765 unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
37766 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
37767 } else
37768 #endif
37769 #if PyLong_SHIFT * 1 < SIZEOF_LONG*8
37770 if (uintval >> (PyLong_SHIFT * 1)) {
37771 unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
37772 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
37773 } else
37774 #endif
37775 unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK));
37776 if (unequal == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
37777 }
37778 #endif
37779 if (PyFloat_CheckExact(op1)) {
37780 const long b = intval;
37781 double a = PyFloat_AS_DOUBLE(op1);
37782 if ((double)a == (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
37783 }
37784 return (
37785 PyObject_RichCompare(op1, op2, Py_EQ));
37786 }
37787
37788 /* None */
__Pyx_div_long(long a,long b)37789 static CYTHON_INLINE long __Pyx_div_long(long a, long b) {
37790 long q = a / b;
37791 long r = a - q*b;
37792 q -= ((r != 0) & ((r ^ b) < 0));
37793 return q;
37794 }
37795
37796 /* PyIntFromDouble */
37797 #if PY_MAJOR_VERSION < 3
__Pyx_PyInt_FromDouble(double value)37798 static CYTHON_INLINE PyObject* __Pyx_PyInt_FromDouble(double value) {
37799 if (value >= (double)LONG_MIN && value <= (double)LONG_MAX) {
37800 return PyInt_FromLong((long)value);
37801 }
37802 return PyLong_FromDouble(value);
37803 }
37804 #endif
37805
37806 /* None */
__Pyx_RaiseUnboundLocalError(const char * varname)37807 static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) {
37808 PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname);
37809 }
37810
37811 /* PyIntBinop */
37812 #if !CYTHON_COMPILING_IN_PYPY
__Pyx_PyInt_SubtractObjC(PyObject * op1,PyObject * op2,CYTHON_UNUSED long intval,int inplace,int zerodivision_check)37813 static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
37814 (void)inplace;
37815 (void)zerodivision_check;
37816 #if PY_MAJOR_VERSION < 3
37817 if (likely(PyInt_CheckExact(op1))) {
37818 const long b = intval;
37819 long x;
37820 long a = PyInt_AS_LONG(op1);
37821 x = (long)((unsigned long)a - b);
37822 if (likely((x^a) >= 0 || (x^~b) >= 0))
37823 return PyInt_FromLong(x);
37824 return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
37825 }
37826 #endif
37827 #if CYTHON_USE_PYLONG_INTERNALS
37828 if (likely(PyLong_CheckExact(op1))) {
37829 const long b = intval;
37830 long a, x;
37831 #ifdef HAVE_LONG_LONG
37832 const PY_LONG_LONG llb = intval;
37833 PY_LONG_LONG lla, llx;
37834 #endif
37835 const digit* digits = ((PyLongObject*)op1)->ob_digit;
37836 const Py_ssize_t size = Py_SIZE(op1);
37837 if (likely(__Pyx_sst_abs(size) <= 1)) {
37838 a = likely(size) ? digits[0] : 0;
37839 if (size == -1) a = -a;
37840 } else {
37841 switch (size) {
37842 case -2:
37843 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
37844 a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
37845 break;
37846 #ifdef HAVE_LONG_LONG
37847 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
37848 lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
37849 goto long_long;
37850 #endif
37851 }
37852 CYTHON_FALLTHROUGH;
37853 case 2:
37854 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
37855 a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
37856 break;
37857 #ifdef HAVE_LONG_LONG
37858 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
37859 lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
37860 goto long_long;
37861 #endif
37862 }
37863 CYTHON_FALLTHROUGH;
37864 case -3:
37865 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
37866 a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
37867 break;
37868 #ifdef HAVE_LONG_LONG
37869 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
37870 lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
37871 goto long_long;
37872 #endif
37873 }
37874 CYTHON_FALLTHROUGH;
37875 case 3:
37876 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
37877 a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
37878 break;
37879 #ifdef HAVE_LONG_LONG
37880 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
37881 lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
37882 goto long_long;
37883 #endif
37884 }
37885 CYTHON_FALLTHROUGH;
37886 case -4:
37887 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
37888 a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
37889 break;
37890 #ifdef HAVE_LONG_LONG
37891 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
37892 lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
37893 goto long_long;
37894 #endif
37895 }
37896 CYTHON_FALLTHROUGH;
37897 case 4:
37898 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
37899 a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
37900 break;
37901 #ifdef HAVE_LONG_LONG
37902 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
37903 lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
37904 goto long_long;
37905 #endif
37906 }
37907 CYTHON_FALLTHROUGH;
37908 default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
37909 }
37910 }
37911 x = a - b;
37912 return PyLong_FromLong(x);
37913 #ifdef HAVE_LONG_LONG
37914 long_long:
37915 llx = lla - llb;
37916 return PyLong_FromLongLong(llx);
37917 #endif
37918
37919
37920 }
37921 #endif
37922 if (PyFloat_CheckExact(op1)) {
37923 const long b = intval;
37924 double a = PyFloat_AS_DOUBLE(op1);
37925 double result;
37926 PyFPE_START_PROTECT("subtract", return NULL)
37927 result = ((double)a) - (double)b;
37928 PyFPE_END_PROTECT(result)
37929 return PyFloat_FromDouble(result);
37930 }
37931 return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2);
37932 }
37933 #endif
37934
37935 /* StringJoin */
37936 #if !CYTHON_COMPILING_IN_CPYTHON
__Pyx_PyBytes_Join(PyObject * sep,PyObject * values)37937 static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values) {
37938 return PyObject_CallMethodObjArgs(sep, __pyx_n_s_join, values, NULL);
37939 }
37940 #endif
37941
37942 /* GetAttr */
__Pyx_GetAttr(PyObject * o,PyObject * n)37943 static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) {
37944 #if CYTHON_USE_TYPE_SLOTS
37945 #if PY_MAJOR_VERSION >= 3
37946 if (likely(PyUnicode_Check(n)))
37947 #else
37948 if (likely(PyString_Check(n)))
37949 #endif
37950 return __Pyx_PyObject_GetAttrStr(o, n);
37951 #endif
37952 return PyObject_GetAttr(o, n);
37953 }
37954
37955 /* GetAttr3 */
__Pyx_GetAttr3Default(PyObject * d)37956 static PyObject *__Pyx_GetAttr3Default(PyObject *d) {
37957 __Pyx_PyThreadState_declare
37958 __Pyx_PyThreadState_assign
37959 if (unlikely(!__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
37960 return NULL;
37961 __Pyx_PyErr_Clear();
37962 Py_INCREF(d);
37963 return d;
37964 }
__Pyx_GetAttr3(PyObject * o,PyObject * n,PyObject * d)37965 static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *o, PyObject *n, PyObject *d) {
37966 PyObject *r = __Pyx_GetAttr(o, n);
37967 return (likely(r)) ? r : __Pyx_GetAttr3Default(d);
37968 }
37969
37970 /* FetchCommonType */
__Pyx_FetchCommonType(PyTypeObject * type)37971 static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) {
37972 PyObject* fake_module;
37973 PyTypeObject* cached_type = NULL;
37974 fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI);
37975 if (!fake_module) return NULL;
37976 Py_INCREF(fake_module);
37977 cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name);
37978 if (cached_type) {
37979 if (!PyType_Check((PyObject*)cached_type)) {
37980 PyErr_Format(PyExc_TypeError,
37981 "Shared Cython type %.200s is not a type object",
37982 type->tp_name);
37983 goto bad;
37984 }
37985 if (cached_type->tp_basicsize != type->tp_basicsize) {
37986 PyErr_Format(PyExc_TypeError,
37987 "Shared Cython type %.200s has the wrong size, try recompiling",
37988 type->tp_name);
37989 goto bad;
37990 }
37991 } else {
37992 if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad;
37993 PyErr_Clear();
37994 if (PyType_Ready(type) < 0) goto bad;
37995 if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0)
37996 goto bad;
37997 Py_INCREF(type);
37998 cached_type = type;
37999 }
38000 done:
38001 Py_DECREF(fake_module);
38002 return cached_type;
38003 bad:
38004 Py_XDECREF(cached_type);
38005 cached_type = NULL;
38006 goto done;
38007 }
38008
38009 /* CythonFunction */
38010 #include <structmember.h>
38011 static PyObject *
__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject * op,CYTHON_UNUSED void * closure)38012 __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure)
38013 {
38014 if (unlikely(op->func_doc == NULL)) {
38015 if (op->func.m_ml->ml_doc) {
38016 #if PY_MAJOR_VERSION >= 3
38017 op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc);
38018 #else
38019 op->func_doc = PyString_FromString(op->func.m_ml->ml_doc);
38020 #endif
38021 if (unlikely(op->func_doc == NULL))
38022 return NULL;
38023 } else {
38024 Py_INCREF(Py_None);
38025 return Py_None;
38026 }
38027 }
38028 Py_INCREF(op->func_doc);
38029 return op->func_doc;
38030 }
38031 static int
__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject * op,PyObject * value,CYTHON_UNUSED void * context)38032 __Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context)
38033 {
38034 PyObject *tmp = op->func_doc;
38035 if (value == NULL) {
38036 value = Py_None;
38037 }
38038 Py_INCREF(value);
38039 op->func_doc = value;
38040 Py_XDECREF(tmp);
38041 return 0;
38042 }
38043 static PyObject *
__Pyx_CyFunction_get_name(__pyx_CyFunctionObject * op,CYTHON_UNUSED void * context)38044 __Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
38045 {
38046 if (unlikely(op->func_name == NULL)) {
38047 #if PY_MAJOR_VERSION >= 3
38048 op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name);
38049 #else
38050 op->func_name = PyString_InternFromString(op->func.m_ml->ml_name);
38051 #endif
38052 if (unlikely(op->func_name == NULL))
38053 return NULL;
38054 }
38055 Py_INCREF(op->func_name);
38056 return op->func_name;
38057 }
38058 static int
__Pyx_CyFunction_set_name(__pyx_CyFunctionObject * op,PyObject * value,CYTHON_UNUSED void * context)38059 __Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context)
38060 {
38061 PyObject *tmp;
38062 #if PY_MAJOR_VERSION >= 3
38063 if (unlikely(value == NULL || !PyUnicode_Check(value)))
38064 #else
38065 if (unlikely(value == NULL || !PyString_Check(value)))
38066 #endif
38067 {
38068 PyErr_SetString(PyExc_TypeError,
38069 "__name__ must be set to a string object");
38070 return -1;
38071 }
38072 tmp = op->func_name;
38073 Py_INCREF(value);
38074 op->func_name = value;
38075 Py_XDECREF(tmp);
38076 return 0;
38077 }
38078 static PyObject *
__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject * op,CYTHON_UNUSED void * context)38079 __Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
38080 {
38081 Py_INCREF(op->func_qualname);
38082 return op->func_qualname;
38083 }
38084 static int
__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject * op,PyObject * value,CYTHON_UNUSED void * context)38085 __Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context)
38086 {
38087 PyObject *tmp;
38088 #if PY_MAJOR_VERSION >= 3
38089 if (unlikely(value == NULL || !PyUnicode_Check(value)))
38090 #else
38091 if (unlikely(value == NULL || !PyString_Check(value)))
38092 #endif
38093 {
38094 PyErr_SetString(PyExc_TypeError,
38095 "__qualname__ must be set to a string object");
38096 return -1;
38097 }
38098 tmp = op->func_qualname;
38099 Py_INCREF(value);
38100 op->func_qualname = value;
38101 Py_XDECREF(tmp);
38102 return 0;
38103 }
38104 static PyObject *
__Pyx_CyFunction_get_self(__pyx_CyFunctionObject * m,CYTHON_UNUSED void * closure)38105 __Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure)
38106 {
38107 PyObject *self;
38108 self = m->func_closure;
38109 if (self == NULL)
38110 self = Py_None;
38111 Py_INCREF(self);
38112 return self;
38113 }
38114 static PyObject *
__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject * op,CYTHON_UNUSED void * context)38115 __Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
38116 {
38117 if (unlikely(op->func_dict == NULL)) {
38118 op->func_dict = PyDict_New();
38119 if (unlikely(op->func_dict == NULL))
38120 return NULL;
38121 }
38122 Py_INCREF(op->func_dict);
38123 return op->func_dict;
38124 }
38125 static int
__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject * op,PyObject * value,CYTHON_UNUSED void * context)38126 __Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context)
38127 {
38128 PyObject *tmp;
38129 if (unlikely(value == NULL)) {
38130 PyErr_SetString(PyExc_TypeError,
38131 "function's dictionary may not be deleted");
38132 return -1;
38133 }
38134 if (unlikely(!PyDict_Check(value))) {
38135 PyErr_SetString(PyExc_TypeError,
38136 "setting function's dictionary to a non-dict");
38137 return -1;
38138 }
38139 tmp = op->func_dict;
38140 Py_INCREF(value);
38141 op->func_dict = value;
38142 Py_XDECREF(tmp);
38143 return 0;
38144 }
38145 static PyObject *
__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject * op,CYTHON_UNUSED void * context)38146 __Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
38147 {
38148 Py_INCREF(op->func_globals);
38149 return op->func_globals;
38150 }
38151 static PyObject *
__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject * op,CYTHON_UNUSED void * context)38152 __Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
38153 {
38154 Py_INCREF(Py_None);
38155 return Py_None;
38156 }
38157 static PyObject *
__Pyx_CyFunction_get_code(__pyx_CyFunctionObject * op,CYTHON_UNUSED void * context)38158 __Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
38159 {
38160 PyObject* result = (op->func_code) ? op->func_code : Py_None;
38161 Py_INCREF(result);
38162 return result;
38163 }
38164 static int
__Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject * op)38165 __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) {
38166 int result = 0;
38167 PyObject *res = op->defaults_getter((PyObject *) op);
38168 if (unlikely(!res))
38169 return -1;
38170 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
38171 op->defaults_tuple = PyTuple_GET_ITEM(res, 0);
38172 Py_INCREF(op->defaults_tuple);
38173 op->defaults_kwdict = PyTuple_GET_ITEM(res, 1);
38174 Py_INCREF(op->defaults_kwdict);
38175 #else
38176 op->defaults_tuple = PySequence_ITEM(res, 0);
38177 if (unlikely(!op->defaults_tuple)) result = -1;
38178 else {
38179 op->defaults_kwdict = PySequence_ITEM(res, 1);
38180 if (unlikely(!op->defaults_kwdict)) result = -1;
38181 }
38182 #endif
38183 Py_DECREF(res);
38184 return result;
38185 }
38186 static int
__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject * op,PyObject * value,CYTHON_UNUSED void * context)38187 __Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, CYTHON_UNUSED void *context) {
38188 PyObject* tmp;
38189 if (!value) {
38190 value = Py_None;
38191 } else if (value != Py_None && !PyTuple_Check(value)) {
38192 PyErr_SetString(PyExc_TypeError,
38193 "__defaults__ must be set to a tuple object");
38194 return -1;
38195 }
38196 Py_INCREF(value);
38197 tmp = op->defaults_tuple;
38198 op->defaults_tuple = value;
38199 Py_XDECREF(tmp);
38200 return 0;
38201 }
38202 static PyObject *
__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject * op,CYTHON_UNUSED void * context)38203 __Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) {
38204 PyObject* result = op->defaults_tuple;
38205 if (unlikely(!result)) {
38206 if (op->defaults_getter) {
38207 if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
38208 result = op->defaults_tuple;
38209 } else {
38210 result = Py_None;
38211 }
38212 }
38213 Py_INCREF(result);
38214 return result;
38215 }
38216 static int
__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject * op,PyObject * value,CYTHON_UNUSED void * context)38217 __Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, CYTHON_UNUSED void *context) {
38218 PyObject* tmp;
38219 if (!value) {
38220 value = Py_None;
38221 } else if (value != Py_None && !PyDict_Check(value)) {
38222 PyErr_SetString(PyExc_TypeError,
38223 "__kwdefaults__ must be set to a dict object");
38224 return -1;
38225 }
38226 Py_INCREF(value);
38227 tmp = op->defaults_kwdict;
38228 op->defaults_kwdict = value;
38229 Py_XDECREF(tmp);
38230 return 0;
38231 }
38232 static PyObject *
__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject * op,CYTHON_UNUSED void * context)38233 __Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) {
38234 PyObject* result = op->defaults_kwdict;
38235 if (unlikely(!result)) {
38236 if (op->defaults_getter) {
38237 if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
38238 result = op->defaults_kwdict;
38239 } else {
38240 result = Py_None;
38241 }
38242 }
38243 Py_INCREF(result);
38244 return result;
38245 }
38246 static int
__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject * op,PyObject * value,CYTHON_UNUSED void * context)38247 __Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, CYTHON_UNUSED void *context) {
38248 PyObject* tmp;
38249 if (!value || value == Py_None) {
38250 value = NULL;
38251 } else if (!PyDict_Check(value)) {
38252 PyErr_SetString(PyExc_TypeError,
38253 "__annotations__ must be set to a dict object");
38254 return -1;
38255 }
38256 Py_XINCREF(value);
38257 tmp = op->func_annotations;
38258 op->func_annotations = value;
38259 Py_XDECREF(tmp);
38260 return 0;
38261 }
38262 static PyObject *
__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject * op,CYTHON_UNUSED void * context)38263 __Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) {
38264 PyObject* result = op->func_annotations;
38265 if (unlikely(!result)) {
38266 result = PyDict_New();
38267 if (unlikely(!result)) return NULL;
38268 op->func_annotations = result;
38269 }
38270 Py_INCREF(result);
38271 return result;
38272 }
38273 static PyGetSetDef __pyx_CyFunction_getsets[] = {
38274 {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
38275 {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
38276 {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
38277 {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
38278 {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0},
38279 {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0},
38280 {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
38281 {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
38282 {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
38283 {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
38284 {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
38285 {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
38286 {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
38287 {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
38288 {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
38289 {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
38290 {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0},
38291 {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0},
38292 {0, 0, 0, 0, 0}
38293 };
38294 static PyMemberDef __pyx_CyFunction_members[] = {
38295 {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), PY_WRITE_RESTRICTED, 0},
38296 {0, 0, 0, 0, 0}
38297 };
38298 static PyObject *
__Pyx_CyFunction_reduce(__pyx_CyFunctionObject * m,CYTHON_UNUSED PyObject * args)38299 __Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args)
38300 {
38301 #if PY_MAJOR_VERSION >= 3
38302 return PyUnicode_FromString(m->func.m_ml->ml_name);
38303 #else
38304 return PyString_FromString(m->func.m_ml->ml_name);
38305 #endif
38306 }
38307 static PyMethodDef __pyx_CyFunction_methods[] = {
38308 {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0},
38309 {0, 0, 0, 0}
38310 };
38311 #if PY_VERSION_HEX < 0x030500A0
38312 #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist)
38313 #else
38314 #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist)
38315 #endif
__Pyx_CyFunction_New(PyTypeObject * type,PyMethodDef * ml,int flags,PyObject * qualname,PyObject * closure,PyObject * module,PyObject * globals,PyObject * code)38316 static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags, PyObject* qualname,
38317 PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
38318 __pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type);
38319 if (op == NULL)
38320 return NULL;
38321 op->flags = flags;
38322 __Pyx_CyFunction_weakreflist(op) = NULL;
38323 op->func.m_ml = ml;
38324 op->func.m_self = (PyObject *) op;
38325 Py_XINCREF(closure);
38326 op->func_closure = closure;
38327 Py_XINCREF(module);
38328 op->func.m_module = module;
38329 op->func_dict = NULL;
38330 op->func_name = NULL;
38331 Py_INCREF(qualname);
38332 op->func_qualname = qualname;
38333 op->func_doc = NULL;
38334 op->func_classobj = NULL;
38335 op->func_globals = globals;
38336 Py_INCREF(op->func_globals);
38337 Py_XINCREF(code);
38338 op->func_code = code;
38339 op->defaults_pyobjects = 0;
38340 op->defaults = NULL;
38341 op->defaults_tuple = NULL;
38342 op->defaults_kwdict = NULL;
38343 op->defaults_getter = NULL;
38344 op->func_annotations = NULL;
38345 PyObject_GC_Track(op);
38346 return (PyObject *) op;
38347 }
38348 static int
__Pyx_CyFunction_clear(__pyx_CyFunctionObject * m)38349 __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m)
38350 {
38351 Py_CLEAR(m->func_closure);
38352 Py_CLEAR(m->func.m_module);
38353 Py_CLEAR(m->func_dict);
38354 Py_CLEAR(m->func_name);
38355 Py_CLEAR(m->func_qualname);
38356 Py_CLEAR(m->func_doc);
38357 Py_CLEAR(m->func_globals);
38358 Py_CLEAR(m->func_code);
38359 Py_CLEAR(m->func_classobj);
38360 Py_CLEAR(m->defaults_tuple);
38361 Py_CLEAR(m->defaults_kwdict);
38362 Py_CLEAR(m->func_annotations);
38363 if (m->defaults) {
38364 PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
38365 int i;
38366 for (i = 0; i < m->defaults_pyobjects; i++)
38367 Py_XDECREF(pydefaults[i]);
38368 PyObject_Free(m->defaults);
38369 m->defaults = NULL;
38370 }
38371 return 0;
38372 }
__Pyx__CyFunction_dealloc(__pyx_CyFunctionObject * m)38373 static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m)
38374 {
38375 if (__Pyx_CyFunction_weakreflist(m) != NULL)
38376 PyObject_ClearWeakRefs((PyObject *) m);
38377 __Pyx_CyFunction_clear(m);
38378 PyObject_GC_Del(m);
38379 }
__Pyx_CyFunction_dealloc(__pyx_CyFunctionObject * m)38380 static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m)
38381 {
38382 PyObject_GC_UnTrack(m);
38383 __Pyx__CyFunction_dealloc(m);
38384 }
__Pyx_CyFunction_traverse(__pyx_CyFunctionObject * m,visitproc visit,void * arg)38385 static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg)
38386 {
38387 Py_VISIT(m->func_closure);
38388 Py_VISIT(m->func.m_module);
38389 Py_VISIT(m->func_dict);
38390 Py_VISIT(m->func_name);
38391 Py_VISIT(m->func_qualname);
38392 Py_VISIT(m->func_doc);
38393 Py_VISIT(m->func_globals);
38394 Py_VISIT(m->func_code);
38395 Py_VISIT(m->func_classobj);
38396 Py_VISIT(m->defaults_tuple);
38397 Py_VISIT(m->defaults_kwdict);
38398 if (m->defaults) {
38399 PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
38400 int i;
38401 for (i = 0; i < m->defaults_pyobjects; i++)
38402 Py_VISIT(pydefaults[i]);
38403 }
38404 return 0;
38405 }
__Pyx_CyFunction_descr_get(PyObject * func,PyObject * obj,PyObject * type)38406 static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type)
38407 {
38408 __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
38409 if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) {
38410 Py_INCREF(func);
38411 return func;
38412 }
38413 if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) {
38414 if (type == NULL)
38415 type = (PyObject *)(Py_TYPE(obj));
38416 return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type)));
38417 }
38418 if (obj == Py_None)
38419 obj = NULL;
38420 return __Pyx_PyMethod_New(func, obj, type);
38421 }
38422 static PyObject*
__Pyx_CyFunction_repr(__pyx_CyFunctionObject * op)38423 __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op)
38424 {
38425 #if PY_MAJOR_VERSION >= 3
38426 return PyUnicode_FromFormat("<cyfunction %U at %p>",
38427 op->func_qualname, (void *)op);
38428 #else
38429 return PyString_FromFormat("<cyfunction %s at %p>",
38430 PyString_AsString(op->func_qualname), (void *)op);
38431 #endif
38432 }
__Pyx_CyFunction_CallMethod(PyObject * func,PyObject * self,PyObject * arg,PyObject * kw)38433 static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) {
38434 PyCFunctionObject* f = (PyCFunctionObject*)func;
38435 PyCFunction meth = f->m_ml->ml_meth;
38436 Py_ssize_t size;
38437 switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) {
38438 case METH_VARARGS:
38439 if (likely(kw == NULL || PyDict_Size(kw) == 0))
38440 return (*meth)(self, arg);
38441 break;
38442 case METH_VARARGS | METH_KEYWORDS:
38443 return (*(PyCFunctionWithKeywords)(void*)meth)(self, arg, kw);
38444 case METH_NOARGS:
38445 if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
38446 size = PyTuple_GET_SIZE(arg);
38447 if (likely(size == 0))
38448 return (*meth)(self, NULL);
38449 PyErr_Format(PyExc_TypeError,
38450 "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)",
38451 f->m_ml->ml_name, size);
38452 return NULL;
38453 }
38454 break;
38455 case METH_O:
38456 if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
38457 size = PyTuple_GET_SIZE(arg);
38458 if (likely(size == 1)) {
38459 PyObject *result, *arg0;
38460 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
38461 arg0 = PyTuple_GET_ITEM(arg, 0);
38462 #else
38463 arg0 = PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL;
38464 #endif
38465 result = (*meth)(self, arg0);
38466 #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS)
38467 Py_DECREF(arg0);
38468 #endif
38469 return result;
38470 }
38471 PyErr_Format(PyExc_TypeError,
38472 "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)",
38473 f->m_ml->ml_name, size);
38474 return NULL;
38475 }
38476 break;
38477 default:
38478 PyErr_SetString(PyExc_SystemError, "Bad call flags in "
38479 "__Pyx_CyFunction_Call. METH_OLDARGS is no "
38480 "longer supported!");
38481 return NULL;
38482 }
38483 PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments",
38484 f->m_ml->ml_name);
38485 return NULL;
38486 }
__Pyx_CyFunction_Call(PyObject * func,PyObject * arg,PyObject * kw)38487 static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
38488 return __Pyx_CyFunction_CallMethod(func, ((PyCFunctionObject*)func)->m_self, arg, kw);
38489 }
__Pyx_CyFunction_CallAsMethod(PyObject * func,PyObject * args,PyObject * kw)38490 static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) {
38491 PyObject *result;
38492 __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func;
38493 if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) {
38494 Py_ssize_t argc;
38495 PyObject *new_args;
38496 PyObject *self;
38497 argc = PyTuple_GET_SIZE(args);
38498 new_args = PyTuple_GetSlice(args, 1, argc);
38499 if (unlikely(!new_args))
38500 return NULL;
38501 self = PyTuple_GetItem(args, 0);
38502 if (unlikely(!self)) {
38503 Py_DECREF(new_args);
38504 return NULL;
38505 }
38506 result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw);
38507 Py_DECREF(new_args);
38508 } else {
38509 result = __Pyx_CyFunction_Call(func, args, kw);
38510 }
38511 return result;
38512 }
38513 static PyTypeObject __pyx_CyFunctionType_type = {
38514 PyVarObject_HEAD_INIT(0, 0)
38515 "cython_function_or_method",
38516 sizeof(__pyx_CyFunctionObject),
38517 0,
38518 (destructor) __Pyx_CyFunction_dealloc,
38519 0,
38520 0,
38521 0,
38522 #if PY_MAJOR_VERSION < 3
38523 0,
38524 #else
38525 0,
38526 #endif
38527 (reprfunc) __Pyx_CyFunction_repr,
38528 0,
38529 0,
38530 0,
38531 0,
38532 __Pyx_CyFunction_CallAsMethod,
38533 0,
38534 0,
38535 0,
38536 0,
38537 Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC,
38538 0,
38539 (traverseproc) __Pyx_CyFunction_traverse,
38540 (inquiry) __Pyx_CyFunction_clear,
38541 0,
38542 #if PY_VERSION_HEX < 0x030500A0
38543 offsetof(__pyx_CyFunctionObject, func_weakreflist),
38544 #else
38545 offsetof(PyCFunctionObject, m_weakreflist),
38546 #endif
38547 0,
38548 0,
38549 __pyx_CyFunction_methods,
38550 __pyx_CyFunction_members,
38551 __pyx_CyFunction_getsets,
38552 0,
38553 0,
38554 __Pyx_CyFunction_descr_get,
38555 0,
38556 offsetof(__pyx_CyFunctionObject, func_dict),
38557 0,
38558 0,
38559 0,
38560 0,
38561 0,
38562 0,
38563 0,
38564 0,
38565 0,
38566 0,
38567 0,
38568 0,
38569 #if PY_VERSION_HEX >= 0x030400a1
38570 0,
38571 #endif
38572 #if PY_VERSION_HEX >= 0x030800b1
38573 0,
38574 #endif
38575 #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
38576 0,
38577 #endif
38578 };
__pyx_CyFunction_init(void)38579 static int __pyx_CyFunction_init(void) {
38580 __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type);
38581 if (unlikely(__pyx_CyFunctionType == NULL)) {
38582 return -1;
38583 }
38584 return 0;
38585 }
__Pyx_CyFunction_InitDefaults(PyObject * func,size_t size,int pyobjects)38586 static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) {
38587 __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
38588 m->defaults = PyObject_Malloc(size);
38589 if (unlikely(!m->defaults))
38590 return PyErr_NoMemory();
38591 memset(m->defaults, 0, size);
38592 m->defaults_pyobjects = pyobjects;
38593 return m->defaults;
38594 }
__Pyx_CyFunction_SetDefaultsTuple(PyObject * func,PyObject * tuple)38595 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
38596 __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
38597 m->defaults_tuple = tuple;
38598 Py_INCREF(tuple);
38599 }
__Pyx_CyFunction_SetDefaultsKwDict(PyObject * func,PyObject * dict)38600 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) {
38601 __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
38602 m->defaults_kwdict = dict;
38603 Py_INCREF(dict);
38604 }
__Pyx_CyFunction_SetAnnotationsDict(PyObject * func,PyObject * dict)38605 static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) {
38606 __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
38607 m->func_annotations = dict;
38608 Py_INCREF(dict);
38609 }
38610
38611 /* py_abs */
38612 #if CYTHON_USE_PYLONG_INTERNALS
__Pyx_PyLong_AbsNeg(PyObject * n)38613 static PyObject *__Pyx_PyLong_AbsNeg(PyObject *n) {
38614 if (likely(Py_SIZE(n) == -1)) {
38615 return PyLong_FromLong(((PyLongObject*)n)->ob_digit[0]);
38616 }
38617 #if CYTHON_COMPILING_IN_CPYTHON
38618 {
38619 PyObject *copy = _PyLong_Copy((PyLongObject*)n);
38620 if (likely(copy)) {
38621 Py_SIZE(copy) = -(Py_SIZE(copy));
38622 }
38623 return copy;
38624 }
38625 #else
38626 return PyNumber_Negative(n);
38627 #endif
38628 }
38629 #endif
38630
38631 /* Import */
__Pyx_Import(PyObject * name,PyObject * from_list,int level)38632 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
38633 PyObject *empty_list = 0;
38634 PyObject *module = 0;
38635 PyObject *global_dict = 0;
38636 PyObject *empty_dict = 0;
38637 PyObject *list;
38638 #if PY_MAJOR_VERSION < 3
38639 PyObject *py_import;
38640 py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
38641 if (!py_import)
38642 goto bad;
38643 #endif
38644 if (from_list)
38645 list = from_list;
38646 else {
38647 empty_list = PyList_New(0);
38648 if (!empty_list)
38649 goto bad;
38650 list = empty_list;
38651 }
38652 global_dict = PyModule_GetDict(__pyx_m);
38653 if (!global_dict)
38654 goto bad;
38655 empty_dict = PyDict_New();
38656 if (!empty_dict)
38657 goto bad;
38658 {
38659 #if PY_MAJOR_VERSION >= 3
38660 if (level == -1) {
38661 if (strchr(__Pyx_MODULE_NAME, '.')) {
38662 module = PyImport_ImportModuleLevelObject(
38663 name, global_dict, empty_dict, list, 1);
38664 if (!module) {
38665 if (!PyErr_ExceptionMatches(PyExc_ImportError))
38666 goto bad;
38667 PyErr_Clear();
38668 }
38669 }
38670 level = 0;
38671 }
38672 #endif
38673 if (!module) {
38674 #if PY_MAJOR_VERSION < 3
38675 PyObject *py_level = PyInt_FromLong(level);
38676 if (!py_level)
38677 goto bad;
38678 module = PyObject_CallFunctionObjArgs(py_import,
38679 name, global_dict, empty_dict, list, py_level, (PyObject *)NULL);
38680 Py_DECREF(py_level);
38681 #else
38682 module = PyImport_ImportModuleLevelObject(
38683 name, global_dict, empty_dict, list, level);
38684 #endif
38685 }
38686 }
38687 bad:
38688 #if PY_MAJOR_VERSION < 3
38689 Py_XDECREF(py_import);
38690 #endif
38691 Py_XDECREF(empty_list);
38692 Py_XDECREF(empty_dict);
38693 return module;
38694 }
38695
38696 /* ImportFrom */
__Pyx_ImportFrom(PyObject * module,PyObject * name)38697 static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
38698 PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
38699 if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
38700 PyErr_Format(PyExc_ImportError,
38701 #if PY_MAJOR_VERSION < 3
38702 "cannot import name %.230s", PyString_AS_STRING(name));
38703 #else
38704 "cannot import name %S", name);
38705 #endif
38706 }
38707 return value;
38708 }
38709
38710 /* HasAttr */
__Pyx_HasAttr(PyObject * o,PyObject * n)38711 static CYTHON_INLINE int __Pyx_HasAttr(PyObject *o, PyObject *n) {
38712 PyObject *r;
38713 if (unlikely(!__Pyx_PyBaseString_Check(n))) {
38714 PyErr_SetString(PyExc_TypeError,
38715 "hasattr(): attribute name must be string");
38716 return -1;
38717 }
38718 r = __Pyx_GetAttr(o, n);
38719 if (unlikely(!r)) {
38720 PyErr_Clear();
38721 return 0;
38722 } else {
38723 Py_DECREF(r);
38724 return 1;
38725 }
38726 }
38727
38728 /* PyObject_GenericGetAttrNoDict */
38729 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
__Pyx_RaiseGenericGetAttributeError(PyTypeObject * tp,PyObject * attr_name)38730 static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) {
38731 PyErr_Format(PyExc_AttributeError,
38732 #if PY_MAJOR_VERSION >= 3
38733 "'%.50s' object has no attribute '%U'",
38734 tp->tp_name, attr_name);
38735 #else
38736 "'%.50s' object has no attribute '%.400s'",
38737 tp->tp_name, PyString_AS_STRING(attr_name));
38738 #endif
38739 return NULL;
38740 }
__Pyx_PyObject_GenericGetAttrNoDict(PyObject * obj,PyObject * attr_name)38741 static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) {
38742 PyObject *descr;
38743 PyTypeObject *tp = Py_TYPE(obj);
38744 if (unlikely(!PyString_Check(attr_name))) {
38745 return PyObject_GenericGetAttr(obj, attr_name);
38746 }
38747 assert(!tp->tp_dictoffset);
38748 descr = _PyType_Lookup(tp, attr_name);
38749 if (unlikely(!descr)) {
38750 return __Pyx_RaiseGenericGetAttributeError(tp, attr_name);
38751 }
38752 Py_INCREF(descr);
38753 #if PY_MAJOR_VERSION < 3
38754 if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS)))
38755 #endif
38756 {
38757 descrgetfunc f = Py_TYPE(descr)->tp_descr_get;
38758 if (unlikely(f)) {
38759 PyObject *res = f(descr, obj, (PyObject *)tp);
38760 Py_DECREF(descr);
38761 return res;
38762 }
38763 }
38764 return descr;
38765 }
38766 #endif
38767
38768 /* PyObject_GenericGetAttr */
38769 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
__Pyx_PyObject_GenericGetAttr(PyObject * obj,PyObject * attr_name)38770 static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) {
38771 if (unlikely(Py_TYPE(obj)->tp_dictoffset)) {
38772 return PyObject_GenericGetAttr(obj, attr_name);
38773 }
38774 return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name);
38775 }
38776 #endif
38777
38778 /* SetVTable */
__Pyx_SetVtable(PyObject * dict,void * vtable)38779 static int __Pyx_SetVtable(PyObject *dict, void *vtable) {
38780 #if PY_VERSION_HEX >= 0x02070000
38781 PyObject *ob = PyCapsule_New(vtable, 0, 0);
38782 #else
38783 PyObject *ob = PyCObject_FromVoidPtr(vtable, 0);
38784 #endif
38785 if (!ob)
38786 goto bad;
38787 if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0)
38788 goto bad;
38789 Py_DECREF(ob);
38790 return 0;
38791 bad:
38792 Py_XDECREF(ob);
38793 return -1;
38794 }
38795
38796 /* SetupReduce */
__Pyx_setup_reduce_is_named(PyObject * meth,PyObject * name)38797 static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) {
38798 int ret;
38799 PyObject *name_attr;
38800 name_attr = __Pyx_PyObject_GetAttrStr(meth, __pyx_n_s_name_2);
38801 if (likely(name_attr)) {
38802 ret = PyObject_RichCompareBool(name_attr, name, Py_EQ);
38803 } else {
38804 ret = -1;
38805 }
38806 if (unlikely(ret < 0)) {
38807 PyErr_Clear();
38808 ret = 0;
38809 }
38810 Py_XDECREF(name_attr);
38811 return ret;
38812 }
__Pyx_setup_reduce(PyObject * type_obj)38813 static int __Pyx_setup_reduce(PyObject* type_obj) {
38814 int ret = 0;
38815 PyObject *object_reduce = NULL;
38816 PyObject *object_reduce_ex = NULL;
38817 PyObject *reduce = NULL;
38818 PyObject *reduce_ex = NULL;
38819 PyObject *reduce_cython = NULL;
38820 PyObject *setstate = NULL;
38821 PyObject *setstate_cython = NULL;
38822 #if CYTHON_USE_PYTYPE_LOOKUP
38823 if (_PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate)) goto GOOD;
38824 #else
38825 if (PyObject_HasAttr(type_obj, __pyx_n_s_getstate)) goto GOOD;
38826 #endif
38827 #if CYTHON_USE_PYTYPE_LOOKUP
38828 object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto BAD;
38829 #else
38830 object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto BAD;
38831 #endif
38832 reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto BAD;
38833 if (reduce_ex == object_reduce_ex) {
38834 #if CYTHON_USE_PYTYPE_LOOKUP
38835 object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_2); if (!object_reduce) goto BAD;
38836 #else
38837 object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_2); if (!object_reduce) goto BAD;
38838 #endif
38839 reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_2); if (unlikely(!reduce)) goto BAD;
38840 if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) {
38841 reduce_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_cython); if (unlikely(!reduce_cython)) goto BAD;
38842 ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_2, reduce_cython); if (unlikely(ret < 0)) goto BAD;
38843 ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto BAD;
38844 setstate = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate);
38845 if (!setstate) PyErr_Clear();
38846 if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) {
38847 setstate_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate_cython); if (unlikely(!setstate_cython)) goto BAD;
38848 ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto BAD;
38849 ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto BAD;
38850 }
38851 PyType_Modified((PyTypeObject*)type_obj);
38852 }
38853 }
38854 goto GOOD;
38855 BAD:
38856 if (!PyErr_Occurred())
38857 PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for %s", ((PyTypeObject*)type_obj)->tp_name);
38858 ret = -1;
38859 GOOD:
38860 #if !CYTHON_USE_PYTYPE_LOOKUP
38861 Py_XDECREF(object_reduce);
38862 Py_XDECREF(object_reduce_ex);
38863 #endif
38864 Py_XDECREF(reduce);
38865 Py_XDECREF(reduce_ex);
38866 Py_XDECREF(reduce_cython);
38867 Py_XDECREF(setstate);
38868 Py_XDECREF(setstate_cython);
38869 return ret;
38870 }
38871
38872 /* TypeImport */
38873 #ifndef __PYX_HAVE_RT_ImportType
38874 #define __PYX_HAVE_RT_ImportType
__Pyx_ImportType(PyObject * module,const char * module_name,const char * class_name,size_t size,enum __Pyx_ImportType_CheckSize check_size)38875 static PyTypeObject *__Pyx_ImportType(PyObject *module, const char *module_name, const char *class_name,
38876 size_t size, enum __Pyx_ImportType_CheckSize check_size)
38877 {
38878 PyObject *result = 0;
38879 char warning[200];
38880 Py_ssize_t basicsize;
38881 #ifdef Py_LIMITED_API
38882 PyObject *py_basicsize;
38883 #endif
38884 result = PyObject_GetAttrString(module, class_name);
38885 if (!result)
38886 goto bad;
38887 if (!PyType_Check(result)) {
38888 PyErr_Format(PyExc_TypeError,
38889 "%.200s.%.200s is not a type object",
38890 module_name, class_name);
38891 goto bad;
38892 }
38893 #ifndef Py_LIMITED_API
38894 basicsize = ((PyTypeObject *)result)->tp_basicsize;
38895 #else
38896 py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
38897 if (!py_basicsize)
38898 goto bad;
38899 basicsize = PyLong_AsSsize_t(py_basicsize);
38900 Py_DECREF(py_basicsize);
38901 py_basicsize = 0;
38902 if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
38903 goto bad;
38904 #endif
38905 if ((size_t)basicsize < size) {
38906 PyErr_Format(PyExc_ValueError,
38907 "%.200s.%.200s size changed, may indicate binary incompatibility. "
38908 "Expected %zd from C header, got %zd from PyObject",
38909 module_name, class_name, size, basicsize);
38910 goto bad;
38911 }
38912 if (check_size == __Pyx_ImportType_CheckSize_Error && (size_t)basicsize != size) {
38913 PyErr_Format(PyExc_ValueError,
38914 "%.200s.%.200s size changed, may indicate binary incompatibility. "
38915 "Expected %zd from C header, got %zd from PyObject",
38916 module_name, class_name, size, basicsize);
38917 goto bad;
38918 }
38919 else if (check_size == __Pyx_ImportType_CheckSize_Warn && (size_t)basicsize > size) {
38920 PyOS_snprintf(warning, sizeof(warning),
38921 "%s.%s size changed, may indicate binary incompatibility. "
38922 "Expected %zd from C header, got %zd from PyObject",
38923 module_name, class_name, size, basicsize);
38924 if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
38925 }
38926 return (PyTypeObject *)result;
38927 bad:
38928 Py_XDECREF(result);
38929 return NULL;
38930 }
38931 #endif
38932
38933 /* CalculateMetaclass */
__Pyx_CalculateMetaclass(PyTypeObject * metaclass,PyObject * bases)38934 static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases) {
38935 Py_ssize_t i, nbases = PyTuple_GET_SIZE(bases);
38936 for (i=0; i < nbases; i++) {
38937 PyTypeObject *tmptype;
38938 PyObject *tmp = PyTuple_GET_ITEM(bases, i);
38939 tmptype = Py_TYPE(tmp);
38940 #if PY_MAJOR_VERSION < 3
38941 if (tmptype == &PyClass_Type)
38942 continue;
38943 #endif
38944 if (!metaclass) {
38945 metaclass = tmptype;
38946 continue;
38947 }
38948 if (PyType_IsSubtype(metaclass, tmptype))
38949 continue;
38950 if (PyType_IsSubtype(tmptype, metaclass)) {
38951 metaclass = tmptype;
38952 continue;
38953 }
38954 PyErr_SetString(PyExc_TypeError,
38955 "metaclass conflict: "
38956 "the metaclass of a derived class "
38957 "must be a (non-strict) subclass "
38958 "of the metaclasses of all its bases");
38959 return NULL;
38960 }
38961 if (!metaclass) {
38962 #if PY_MAJOR_VERSION < 3
38963 metaclass = &PyClass_Type;
38964 #else
38965 metaclass = &PyType_Type;
38966 #endif
38967 }
38968 Py_INCREF((PyObject*) metaclass);
38969 return (PyObject*) metaclass;
38970 }
38971
38972 /* Py3ClassCreate */
__Pyx_Py3MetaclassPrepare(PyObject * metaclass,PyObject * bases,PyObject * name,PyObject * qualname,PyObject * mkw,PyObject * modname,PyObject * doc)38973 static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name,
38974 PyObject *qualname, PyObject *mkw, PyObject *modname, PyObject *doc) {
38975 PyObject *ns;
38976 if (metaclass) {
38977 PyObject *prep = __Pyx_PyObject_GetAttrStr(metaclass, __pyx_n_s_prepare);
38978 if (prep) {
38979 PyObject *pargs = PyTuple_Pack(2, name, bases);
38980 if (unlikely(!pargs)) {
38981 Py_DECREF(prep);
38982 return NULL;
38983 }
38984 ns = PyObject_Call(prep, pargs, mkw);
38985 Py_DECREF(prep);
38986 Py_DECREF(pargs);
38987 } else {
38988 if (unlikely(!PyErr_ExceptionMatches(PyExc_AttributeError)))
38989 return NULL;
38990 PyErr_Clear();
38991 ns = PyDict_New();
38992 }
38993 } else {
38994 ns = PyDict_New();
38995 }
38996 if (unlikely(!ns))
38997 return NULL;
38998 if (unlikely(PyObject_SetItem(ns, __pyx_n_s_module, modname) < 0)) goto bad;
38999 if (unlikely(PyObject_SetItem(ns, __pyx_n_s_qualname, qualname) < 0)) goto bad;
39000 if (unlikely(doc && PyObject_SetItem(ns, __pyx_n_s_doc, doc) < 0)) goto bad;
39001 return ns;
39002 bad:
39003 Py_DECREF(ns);
39004 return NULL;
39005 }
__Pyx_Py3ClassCreate(PyObject * metaclass,PyObject * name,PyObject * bases,PyObject * dict,PyObject * mkw,int calculate_metaclass,int allow_py2_metaclass)39006 static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases,
39007 PyObject *dict, PyObject *mkw,
39008 int calculate_metaclass, int allow_py2_metaclass) {
39009 PyObject *result, *margs;
39010 PyObject *owned_metaclass = NULL;
39011 if (allow_py2_metaclass) {
39012 owned_metaclass = PyObject_GetItem(dict, __pyx_n_s_metaclass);
39013 if (owned_metaclass) {
39014 metaclass = owned_metaclass;
39015 } else if (likely(PyErr_ExceptionMatches(PyExc_KeyError))) {
39016 PyErr_Clear();
39017 } else {
39018 return NULL;
39019 }
39020 }
39021 if (calculate_metaclass && (!metaclass || PyType_Check(metaclass))) {
39022 metaclass = __Pyx_CalculateMetaclass((PyTypeObject*) metaclass, bases);
39023 Py_XDECREF(owned_metaclass);
39024 if (unlikely(!metaclass))
39025 return NULL;
39026 owned_metaclass = metaclass;
39027 }
39028 margs = PyTuple_Pack(3, name, bases, dict);
39029 if (unlikely(!margs)) {
39030 result = NULL;
39031 } else {
39032 result = PyObject_Call(metaclass, margs, mkw);
39033 Py_DECREF(margs);
39034 }
39035 Py_XDECREF(owned_metaclass);
39036 return result;
39037 }
39038
39039 /* CLineInTraceback */
39040 #ifndef CYTHON_CLINE_IN_TRACEBACK
__Pyx_CLineForTraceback(PyThreadState * tstate,int c_line)39041 static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) {
39042 PyObject *use_cline;
39043 PyObject *ptype, *pvalue, *ptraceback;
39044 #if CYTHON_COMPILING_IN_CPYTHON
39045 PyObject **cython_runtime_dict;
39046 #endif
39047 if (unlikely(!__pyx_cython_runtime)) {
39048 return c_line;
39049 }
39050 __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
39051 #if CYTHON_COMPILING_IN_CPYTHON
39052 cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime);
39053 if (likely(cython_runtime_dict)) {
39054 __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
39055 use_cline, *cython_runtime_dict,
39056 __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback))
39057 } else
39058 #endif
39059 {
39060 PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback);
39061 if (use_cline_obj) {
39062 use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True;
39063 Py_DECREF(use_cline_obj);
39064 } else {
39065 PyErr_Clear();
39066 use_cline = NULL;
39067 }
39068 }
39069 if (!use_cline) {
39070 c_line = 0;
39071 PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False);
39072 }
39073 else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) {
39074 c_line = 0;
39075 }
39076 __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
39077 return c_line;
39078 }
39079 #endif
39080
39081 /* CodeObjectCache */
__pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry * entries,int count,int code_line)39082 static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
39083 int start = 0, mid = 0, end = count - 1;
39084 if (end >= 0 && code_line > entries[end].code_line) {
39085 return count;
39086 }
39087 while (start < end) {
39088 mid = start + (end - start) / 2;
39089 if (code_line < entries[mid].code_line) {
39090 end = mid;
39091 } else if (code_line > entries[mid].code_line) {
39092 start = mid + 1;
39093 } else {
39094 return mid;
39095 }
39096 }
39097 if (code_line <= entries[mid].code_line) {
39098 return mid;
39099 } else {
39100 return mid + 1;
39101 }
39102 }
__pyx_find_code_object(int code_line)39103 static PyCodeObject *__pyx_find_code_object(int code_line) {
39104 PyCodeObject* code_object;
39105 int pos;
39106 if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
39107 return NULL;
39108 }
39109 pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
39110 if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
39111 return NULL;
39112 }
39113 code_object = __pyx_code_cache.entries[pos].code_object;
39114 Py_INCREF(code_object);
39115 return code_object;
39116 }
__pyx_insert_code_object(int code_line,PyCodeObject * code_object)39117 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
39118 int pos, i;
39119 __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
39120 if (unlikely(!code_line)) {
39121 return;
39122 }
39123 if (unlikely(!entries)) {
39124 entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
39125 if (likely(entries)) {
39126 __pyx_code_cache.entries = entries;
39127 __pyx_code_cache.max_count = 64;
39128 __pyx_code_cache.count = 1;
39129 entries[0].code_line = code_line;
39130 entries[0].code_object = code_object;
39131 Py_INCREF(code_object);
39132 }
39133 return;
39134 }
39135 pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
39136 if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
39137 PyCodeObject* tmp = entries[pos].code_object;
39138 entries[pos].code_object = code_object;
39139 Py_DECREF(tmp);
39140 return;
39141 }
39142 if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
39143 int new_max = __pyx_code_cache.max_count + 64;
39144 entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
39145 __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry));
39146 if (unlikely(!entries)) {
39147 return;
39148 }
39149 __pyx_code_cache.entries = entries;
39150 __pyx_code_cache.max_count = new_max;
39151 }
39152 for (i=__pyx_code_cache.count; i>pos; i--) {
39153 entries[i] = entries[i-1];
39154 }
39155 entries[pos].code_line = code_line;
39156 entries[pos].code_object = code_object;
39157 __pyx_code_cache.count++;
39158 Py_INCREF(code_object);
39159 }
39160
39161 /* AddTraceback */
39162 #include "compile.h"
39163 #include "frameobject.h"
39164 #include "traceback.h"
__Pyx_CreateCodeObjectForTraceback(const char * funcname,int c_line,int py_line,const char * filename)39165 static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
39166 const char *funcname, int c_line,
39167 int py_line, const char *filename) {
39168 PyCodeObject *py_code = 0;
39169 PyObject *py_srcfile = 0;
39170 PyObject *py_funcname = 0;
39171 #if PY_MAJOR_VERSION < 3
39172 py_srcfile = PyString_FromString(filename);
39173 #else
39174 py_srcfile = PyUnicode_FromString(filename);
39175 #endif
39176 if (!py_srcfile) goto bad;
39177 if (c_line) {
39178 #if PY_MAJOR_VERSION < 3
39179 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
39180 #else
39181 py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
39182 #endif
39183 }
39184 else {
39185 #if PY_MAJOR_VERSION < 3
39186 py_funcname = PyString_FromString(funcname);
39187 #else
39188 py_funcname = PyUnicode_FromString(funcname);
39189 #endif
39190 }
39191 if (!py_funcname) goto bad;
39192 py_code = __Pyx_PyCode_New(
39193 0,
39194 0,
39195 0,
39196 0,
39197 0,
39198 __pyx_empty_bytes, /*PyObject *code,*/
39199 __pyx_empty_tuple, /*PyObject *consts,*/
39200 __pyx_empty_tuple, /*PyObject *names,*/
39201 __pyx_empty_tuple, /*PyObject *varnames,*/
39202 __pyx_empty_tuple, /*PyObject *freevars,*/
39203 __pyx_empty_tuple, /*PyObject *cellvars,*/
39204 py_srcfile, /*PyObject *filename,*/
39205 py_funcname, /*PyObject *name,*/
39206 py_line,
39207 __pyx_empty_bytes /*PyObject *lnotab*/
39208 );
39209 Py_DECREF(py_srcfile);
39210 Py_DECREF(py_funcname);
39211 return py_code;
39212 bad:
39213 Py_XDECREF(py_srcfile);
39214 Py_XDECREF(py_funcname);
39215 return NULL;
39216 }
__Pyx_AddTraceback(const char * funcname,int c_line,int py_line,const char * filename)39217 static void __Pyx_AddTraceback(const char *funcname, int c_line,
39218 int py_line, const char *filename) {
39219 PyCodeObject *py_code = 0;
39220 PyFrameObject *py_frame = 0;
39221 PyThreadState *tstate = __Pyx_PyThreadState_Current;
39222 if (c_line) {
39223 c_line = __Pyx_CLineForTraceback(tstate, c_line);
39224 }
39225 py_code = __pyx_find_code_object(c_line ? -c_line : py_line);
39226 if (!py_code) {
39227 py_code = __Pyx_CreateCodeObjectForTraceback(
39228 funcname, c_line, py_line, filename);
39229 if (!py_code) goto bad;
39230 __pyx_insert_code_object(c_line ? -c_line : py_line, py_code);
39231 }
39232 py_frame = PyFrame_New(
39233 tstate, /*PyThreadState *tstate,*/
39234 py_code, /*PyCodeObject *code,*/
39235 __pyx_d, /*PyObject *globals,*/
39236 0 /*PyObject *locals*/
39237 );
39238 if (!py_frame) goto bad;
39239 __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
39240 PyTraceBack_Here(py_frame);
39241 bad:
39242 Py_XDECREF(py_code);
39243 Py_XDECREF(py_frame);
39244 }
39245
39246 /* CIntToPy */
__Pyx_PyInt_From_char(char value)39247 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_char(char value) {
39248 const char neg_one = (char) ((char) 0 - (char) 1), const_zero = (char) 0;
39249 const int is_unsigned = neg_one > const_zero;
39250 if (is_unsigned) {
39251 if (sizeof(char) < sizeof(long)) {
39252 return PyInt_FromLong((long) value);
39253 } else if (sizeof(char) <= sizeof(unsigned long)) {
39254 return PyLong_FromUnsignedLong((unsigned long) value);
39255 #ifdef HAVE_LONG_LONG
39256 } else if (sizeof(char) <= sizeof(unsigned PY_LONG_LONG)) {
39257 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
39258 #endif
39259 }
39260 } else {
39261 if (sizeof(char) <= sizeof(long)) {
39262 return PyInt_FromLong((long) value);
39263 #ifdef HAVE_LONG_LONG
39264 } else if (sizeof(char) <= sizeof(PY_LONG_LONG)) {
39265 return PyLong_FromLongLong((PY_LONG_LONG) value);
39266 #endif
39267 }
39268 }
39269 {
39270 int one = 1; int little = (int)*(unsigned char *)&one;
39271 unsigned char *bytes = (unsigned char *)&value;
39272 return _PyLong_FromByteArray(bytes, sizeof(char),
39273 little, !is_unsigned);
39274 }
39275 }
39276
39277 /* CIntFromPyVerify */
39278 #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
39279 __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
39280 #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
39281 __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
39282 #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
39283 {\
39284 func_type value = func_value;\
39285 if (sizeof(target_type) < sizeof(func_type)) {\
39286 if (unlikely(value != (func_type) (target_type) value)) {\
39287 func_type zero = 0;\
39288 if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
39289 return (target_type) -1;\
39290 if (is_unsigned && unlikely(value < zero))\
39291 goto raise_neg_overflow;\
39292 else\
39293 goto raise_overflow;\
39294 }\
39295 }\
39296 return (target_type) value;\
39297 }
39298
39299 #if PY_MAJOR_VERSION < 3
__Pyx_GetBuffer(PyObject * obj,Py_buffer * view,int flags)39300 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) {
39301 if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags);
39302 if (__Pyx_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags);
39303 PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name);
39304 return -1;
39305 }
__Pyx_ReleaseBuffer(Py_buffer * view)39306 static void __Pyx_ReleaseBuffer(Py_buffer *view) {
39307 PyObject *obj = view->obj;
39308 if (!obj) return;
39309 if (PyObject_CheckBuffer(obj)) {
39310 PyBuffer_Release(view);
39311 return;
39312 }
39313 if ((0)) {}
39314 else if (__Pyx_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view);
39315 view->obj = NULL;
39316 Py_DECREF(obj);
39317 }
39318 #endif
39319
39320
39321 /* CIntToPy */
__Pyx_PyInt_From_npy_int32(npy_int32 value)39322 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_npy_int32(npy_int32 value) {
39323 const npy_int32 neg_one = (npy_int32) ((npy_int32) 0 - (npy_int32) 1), const_zero = (npy_int32) 0;
39324 const int is_unsigned = neg_one > const_zero;
39325 if (is_unsigned) {
39326 if (sizeof(npy_int32) < sizeof(long)) {
39327 return PyInt_FromLong((long) value);
39328 } else if (sizeof(npy_int32) <= sizeof(unsigned long)) {
39329 return PyLong_FromUnsignedLong((unsigned long) value);
39330 #ifdef HAVE_LONG_LONG
39331 } else if (sizeof(npy_int32) <= sizeof(unsigned PY_LONG_LONG)) {
39332 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
39333 #endif
39334 }
39335 } else {
39336 if (sizeof(npy_int32) <= sizeof(long)) {
39337 return PyInt_FromLong((long) value);
39338 #ifdef HAVE_LONG_LONG
39339 } else if (sizeof(npy_int32) <= sizeof(PY_LONG_LONG)) {
39340 return PyLong_FromLongLong((PY_LONG_LONG) value);
39341 #endif
39342 }
39343 }
39344 {
39345 int one = 1; int little = (int)*(unsigned char *)&one;
39346 unsigned char *bytes = (unsigned char *)&value;
39347 return _PyLong_FromByteArray(bytes, sizeof(npy_int32),
39348 little, !is_unsigned);
39349 }
39350 }
39351
39352 /* CIntToPy */
__Pyx_PyInt_From_npy_int64(npy_int64 value)39353 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_npy_int64(npy_int64 value) {
39354 const npy_int64 neg_one = (npy_int64) ((npy_int64) 0 - (npy_int64) 1), const_zero = (npy_int64) 0;
39355 const int is_unsigned = neg_one > const_zero;
39356 if (is_unsigned) {
39357 if (sizeof(npy_int64) < sizeof(long)) {
39358 return PyInt_FromLong((long) value);
39359 } else if (sizeof(npy_int64) <= sizeof(unsigned long)) {
39360 return PyLong_FromUnsignedLong((unsigned long) value);
39361 #ifdef HAVE_LONG_LONG
39362 } else if (sizeof(npy_int64) <= sizeof(unsigned PY_LONG_LONG)) {
39363 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
39364 #endif
39365 }
39366 } else {
39367 if (sizeof(npy_int64) <= sizeof(long)) {
39368 return PyInt_FromLong((long) value);
39369 #ifdef HAVE_LONG_LONG
39370 } else if (sizeof(npy_int64) <= sizeof(PY_LONG_LONG)) {
39371 return PyLong_FromLongLong((PY_LONG_LONG) value);
39372 #endif
39373 }
39374 }
39375 {
39376 int one = 1; int little = (int)*(unsigned char *)&one;
39377 unsigned char *bytes = (unsigned char *)&value;
39378 return _PyLong_FromByteArray(bytes, sizeof(npy_int64),
39379 little, !is_unsigned);
39380 }
39381 }
39382
39383 /* CIntToPy */
__Pyx_PyInt_From_long(long value)39384 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
39385 const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0;
39386 const int is_unsigned = neg_one > const_zero;
39387 if (is_unsigned) {
39388 if (sizeof(long) < sizeof(long)) {
39389 return PyInt_FromLong((long) value);
39390 } else if (sizeof(long) <= sizeof(unsigned long)) {
39391 return PyLong_FromUnsignedLong((unsigned long) value);
39392 #ifdef HAVE_LONG_LONG
39393 } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
39394 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
39395 #endif
39396 }
39397 } else {
39398 if (sizeof(long) <= sizeof(long)) {
39399 return PyInt_FromLong((long) value);
39400 #ifdef HAVE_LONG_LONG
39401 } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
39402 return PyLong_FromLongLong((PY_LONG_LONG) value);
39403 #endif
39404 }
39405 }
39406 {
39407 int one = 1; int little = (int)*(unsigned char *)&one;
39408 unsigned char *bytes = (unsigned char *)&value;
39409 return _PyLong_FromByteArray(bytes, sizeof(long),
39410 little, !is_unsigned);
39411 }
39412 }
39413
39414 /* CIntToPy */
__Pyx_PyInt_From_short(short value)39415 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_short(short value) {
39416 const short neg_one = (short) ((short) 0 - (short) 1), const_zero = (short) 0;
39417 const int is_unsigned = neg_one > const_zero;
39418 if (is_unsigned) {
39419 if (sizeof(short) < sizeof(long)) {
39420 return PyInt_FromLong((long) value);
39421 } else if (sizeof(short) <= sizeof(unsigned long)) {
39422 return PyLong_FromUnsignedLong((unsigned long) value);
39423 #ifdef HAVE_LONG_LONG
39424 } else if (sizeof(short) <= sizeof(unsigned PY_LONG_LONG)) {
39425 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
39426 #endif
39427 }
39428 } else {
39429 if (sizeof(short) <= sizeof(long)) {
39430 return PyInt_FromLong((long) value);
39431 #ifdef HAVE_LONG_LONG
39432 } else if (sizeof(short) <= sizeof(PY_LONG_LONG)) {
39433 return PyLong_FromLongLong((PY_LONG_LONG) value);
39434 #endif
39435 }
39436 }
39437 {
39438 int one = 1; int little = (int)*(unsigned char *)&one;
39439 unsigned char *bytes = (unsigned char *)&value;
39440 return _PyLong_FromByteArray(bytes, sizeof(short),
39441 little, !is_unsigned);
39442 }
39443 }
39444
39445 /* Declarations */
39446 #if CYTHON_CCOMPLEX
39447 #ifdef __cplusplus
__pyx_t_float_complex_from_parts(float x,float y)39448 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
39449 return ::std::complex< float >(x, y);
39450 }
39451 #else
__pyx_t_float_complex_from_parts(float x,float y)39452 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
39453 return x + y*(__pyx_t_float_complex)_Complex_I;
39454 }
39455 #endif
39456 #else
__pyx_t_float_complex_from_parts(float x,float y)39457 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
39458 __pyx_t_float_complex z;
39459 z.real = x;
39460 z.imag = y;
39461 return z;
39462 }
39463 #endif
39464
39465 /* Arithmetic */
39466 #if CYTHON_CCOMPLEX
39467 #else
__Pyx_c_eq_float(__pyx_t_float_complex a,__pyx_t_float_complex b)39468 static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
39469 return (a.real == b.real) && (a.imag == b.imag);
39470 }
__Pyx_c_sum_float(__pyx_t_float_complex a,__pyx_t_float_complex b)39471 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
39472 __pyx_t_float_complex z;
39473 z.real = a.real + b.real;
39474 z.imag = a.imag + b.imag;
39475 return z;
39476 }
__Pyx_c_diff_float(__pyx_t_float_complex a,__pyx_t_float_complex b)39477 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
39478 __pyx_t_float_complex z;
39479 z.real = a.real - b.real;
39480 z.imag = a.imag - b.imag;
39481 return z;
39482 }
__Pyx_c_prod_float(__pyx_t_float_complex a,__pyx_t_float_complex b)39483 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
39484 __pyx_t_float_complex z;
39485 z.real = a.real * b.real - a.imag * b.imag;
39486 z.imag = a.real * b.imag + a.imag * b.real;
39487 return z;
39488 }
39489 #if 1
__Pyx_c_quot_float(__pyx_t_float_complex a,__pyx_t_float_complex b)39490 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
39491 if (b.imag == 0) {
39492 return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
39493 } else if (fabsf(b.real) >= fabsf(b.imag)) {
39494 if (b.real == 0 && b.imag == 0) {
39495 return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag);
39496 } else {
39497 float r = b.imag / b.real;
39498 float s = (float)(1.0) / (b.real + b.imag * r);
39499 return __pyx_t_float_complex_from_parts(
39500 (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
39501 }
39502 } else {
39503 float r = b.real / b.imag;
39504 float s = (float)(1.0) / (b.imag + b.real * r);
39505 return __pyx_t_float_complex_from_parts(
39506 (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
39507 }
39508 }
39509 #else
__Pyx_c_quot_float(__pyx_t_float_complex a,__pyx_t_float_complex b)39510 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
39511 if (b.imag == 0) {
39512 return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
39513 } else {
39514 float denom = b.real * b.real + b.imag * b.imag;
39515 return __pyx_t_float_complex_from_parts(
39516 (a.real * b.real + a.imag * b.imag) / denom,
39517 (a.imag * b.real - a.real * b.imag) / denom);
39518 }
39519 }
39520 #endif
__Pyx_c_neg_float(__pyx_t_float_complex a)39521 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) {
39522 __pyx_t_float_complex z;
39523 z.real = -a.real;
39524 z.imag = -a.imag;
39525 return z;
39526 }
__Pyx_c_is_zero_float(__pyx_t_float_complex a)39527 static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) {
39528 return (a.real == 0) && (a.imag == 0);
39529 }
__Pyx_c_conj_float(__pyx_t_float_complex a)39530 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) {
39531 __pyx_t_float_complex z;
39532 z.real = a.real;
39533 z.imag = -a.imag;
39534 return z;
39535 }
39536 #if 1
__Pyx_c_abs_float(__pyx_t_float_complex z)39537 static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) {
39538 #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
39539 return sqrtf(z.real*z.real + z.imag*z.imag);
39540 #else
39541 return hypotf(z.real, z.imag);
39542 #endif
39543 }
__Pyx_c_pow_float(__pyx_t_float_complex a,__pyx_t_float_complex b)39544 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
39545 __pyx_t_float_complex z;
39546 float r, lnr, theta, z_r, z_theta;
39547 if (b.imag == 0 && b.real == (int)b.real) {
39548 if (b.real < 0) {
39549 float denom = a.real * a.real + a.imag * a.imag;
39550 a.real = a.real / denom;
39551 a.imag = -a.imag / denom;
39552 b.real = -b.real;
39553 }
39554 switch ((int)b.real) {
39555 case 0:
39556 z.real = 1;
39557 z.imag = 0;
39558 return z;
39559 case 1:
39560 return a;
39561 case 2:
39562 return __Pyx_c_prod_float(a, a);
39563 case 3:
39564 z = __Pyx_c_prod_float(a, a);
39565 return __Pyx_c_prod_float(z, a);
39566 case 4:
39567 z = __Pyx_c_prod_float(a, a);
39568 return __Pyx_c_prod_float(z, z);
39569 }
39570 }
39571 if (a.imag == 0) {
39572 if (a.real == 0) {
39573 return a;
39574 } else if (b.imag == 0) {
39575 z.real = powf(a.real, b.real);
39576 z.imag = 0;
39577 return z;
39578 } else if (a.real > 0) {
39579 r = a.real;
39580 theta = 0;
39581 } else {
39582 r = -a.real;
39583 theta = atan2f(0.0, -1.0);
39584 }
39585 } else {
39586 r = __Pyx_c_abs_float(a);
39587 theta = atan2f(a.imag, a.real);
39588 }
39589 lnr = logf(r);
39590 z_r = expf(lnr * b.real - theta * b.imag);
39591 z_theta = theta * b.real + lnr * b.imag;
39592 z.real = z_r * cosf(z_theta);
39593 z.imag = z_r * sinf(z_theta);
39594 return z;
39595 }
39596 #endif
39597 #endif
39598
39599 /* Declarations */
39600 #if CYTHON_CCOMPLEX
39601 #ifdef __cplusplus
__pyx_t_double_complex_from_parts(double x,double y)39602 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
39603 return ::std::complex< double >(x, y);
39604 }
39605 #else
__pyx_t_double_complex_from_parts(double x,double y)39606 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
39607 return x + y*(__pyx_t_double_complex)_Complex_I;
39608 }
39609 #endif
39610 #else
__pyx_t_double_complex_from_parts(double x,double y)39611 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
39612 __pyx_t_double_complex z;
39613 z.real = x;
39614 z.imag = y;
39615 return z;
39616 }
39617 #endif
39618
39619 /* Arithmetic */
39620 #if CYTHON_CCOMPLEX
39621 #else
__Pyx_c_eq_double(__pyx_t_double_complex a,__pyx_t_double_complex b)39622 static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
39623 return (a.real == b.real) && (a.imag == b.imag);
39624 }
__Pyx_c_sum_double(__pyx_t_double_complex a,__pyx_t_double_complex b)39625 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
39626 __pyx_t_double_complex z;
39627 z.real = a.real + b.real;
39628 z.imag = a.imag + b.imag;
39629 return z;
39630 }
__Pyx_c_diff_double(__pyx_t_double_complex a,__pyx_t_double_complex b)39631 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
39632 __pyx_t_double_complex z;
39633 z.real = a.real - b.real;
39634 z.imag = a.imag - b.imag;
39635 return z;
39636 }
__Pyx_c_prod_double(__pyx_t_double_complex a,__pyx_t_double_complex b)39637 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
39638 __pyx_t_double_complex z;
39639 z.real = a.real * b.real - a.imag * b.imag;
39640 z.imag = a.real * b.imag + a.imag * b.real;
39641 return z;
39642 }
39643 #if 1
__Pyx_c_quot_double(__pyx_t_double_complex a,__pyx_t_double_complex b)39644 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
39645 if (b.imag == 0) {
39646 return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
39647 } else if (fabs(b.real) >= fabs(b.imag)) {
39648 if (b.real == 0 && b.imag == 0) {
39649 return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag);
39650 } else {
39651 double r = b.imag / b.real;
39652 double s = (double)(1.0) / (b.real + b.imag * r);
39653 return __pyx_t_double_complex_from_parts(
39654 (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
39655 }
39656 } else {
39657 double r = b.real / b.imag;
39658 double s = (double)(1.0) / (b.imag + b.real * r);
39659 return __pyx_t_double_complex_from_parts(
39660 (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
39661 }
39662 }
39663 #else
__Pyx_c_quot_double(__pyx_t_double_complex a,__pyx_t_double_complex b)39664 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
39665 if (b.imag == 0) {
39666 return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
39667 } else {
39668 double denom = b.real * b.real + b.imag * b.imag;
39669 return __pyx_t_double_complex_from_parts(
39670 (a.real * b.real + a.imag * b.imag) / denom,
39671 (a.imag * b.real - a.real * b.imag) / denom);
39672 }
39673 }
39674 #endif
__Pyx_c_neg_double(__pyx_t_double_complex a)39675 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) {
39676 __pyx_t_double_complex z;
39677 z.real = -a.real;
39678 z.imag = -a.imag;
39679 return z;
39680 }
__Pyx_c_is_zero_double(__pyx_t_double_complex a)39681 static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) {
39682 return (a.real == 0) && (a.imag == 0);
39683 }
__Pyx_c_conj_double(__pyx_t_double_complex a)39684 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) {
39685 __pyx_t_double_complex z;
39686 z.real = a.real;
39687 z.imag = -a.imag;
39688 return z;
39689 }
39690 #if 1
__Pyx_c_abs_double(__pyx_t_double_complex z)39691 static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) {
39692 #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
39693 return sqrt(z.real*z.real + z.imag*z.imag);
39694 #else
39695 return hypot(z.real, z.imag);
39696 #endif
39697 }
__Pyx_c_pow_double(__pyx_t_double_complex a,__pyx_t_double_complex b)39698 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
39699 __pyx_t_double_complex z;
39700 double r, lnr, theta, z_r, z_theta;
39701 if (b.imag == 0 && b.real == (int)b.real) {
39702 if (b.real < 0) {
39703 double denom = a.real * a.real + a.imag * a.imag;
39704 a.real = a.real / denom;
39705 a.imag = -a.imag / denom;
39706 b.real = -b.real;
39707 }
39708 switch ((int)b.real) {
39709 case 0:
39710 z.real = 1;
39711 z.imag = 0;
39712 return z;
39713 case 1:
39714 return a;
39715 case 2:
39716 return __Pyx_c_prod_double(a, a);
39717 case 3:
39718 z = __Pyx_c_prod_double(a, a);
39719 return __Pyx_c_prod_double(z, a);
39720 case 4:
39721 z = __Pyx_c_prod_double(a, a);
39722 return __Pyx_c_prod_double(z, z);
39723 }
39724 }
39725 if (a.imag == 0) {
39726 if (a.real == 0) {
39727 return a;
39728 } else if (b.imag == 0) {
39729 z.real = pow(a.real, b.real);
39730 z.imag = 0;
39731 return z;
39732 } else if (a.real > 0) {
39733 r = a.real;
39734 theta = 0;
39735 } else {
39736 r = -a.real;
39737 theta = atan2(0.0, -1.0);
39738 }
39739 } else {
39740 r = __Pyx_c_abs_double(a);
39741 theta = atan2(a.imag, a.real);
39742 }
39743 lnr = log(r);
39744 z_r = exp(lnr * b.real - theta * b.imag);
39745 z_theta = theta * b.real + lnr * b.imag;
39746 z.real = z_r * cos(z_theta);
39747 z.imag = z_r * sin(z_theta);
39748 return z;
39749 }
39750 #endif
39751 #endif
39752
39753 /* CIntToPy */
__Pyx_PyInt_From_int(int value)39754 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
39755 const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0;
39756 const int is_unsigned = neg_one > const_zero;
39757 if (is_unsigned) {
39758 if (sizeof(int) < sizeof(long)) {
39759 return PyInt_FromLong((long) value);
39760 } else if (sizeof(int) <= sizeof(unsigned long)) {
39761 return PyLong_FromUnsignedLong((unsigned long) value);
39762 #ifdef HAVE_LONG_LONG
39763 } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
39764 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
39765 #endif
39766 }
39767 } else {
39768 if (sizeof(int) <= sizeof(long)) {
39769 return PyInt_FromLong((long) value);
39770 #ifdef HAVE_LONG_LONG
39771 } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
39772 return PyLong_FromLongLong((PY_LONG_LONG) value);
39773 #endif
39774 }
39775 }
39776 {
39777 int one = 1; int little = (int)*(unsigned char *)&one;
39778 unsigned char *bytes = (unsigned char *)&value;
39779 return _PyLong_FromByteArray(bytes, sizeof(int),
39780 little, !is_unsigned);
39781 }
39782 }
39783
39784 /* CIntToPy */
__Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value)39785 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) {
39786 const enum NPY_TYPES neg_one = (enum NPY_TYPES) ((enum NPY_TYPES) 0 - (enum NPY_TYPES) 1), const_zero = (enum NPY_TYPES) 0;
39787 const int is_unsigned = neg_one > const_zero;
39788 if (is_unsigned) {
39789 if (sizeof(enum NPY_TYPES) < sizeof(long)) {
39790 return PyInt_FromLong((long) value);
39791 } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) {
39792 return PyLong_FromUnsignedLong((unsigned long) value);
39793 #ifdef HAVE_LONG_LONG
39794 } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) {
39795 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
39796 #endif
39797 }
39798 } else {
39799 if (sizeof(enum NPY_TYPES) <= sizeof(long)) {
39800 return PyInt_FromLong((long) value);
39801 #ifdef HAVE_LONG_LONG
39802 } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) {
39803 return PyLong_FromLongLong((PY_LONG_LONG) value);
39804 #endif
39805 }
39806 }
39807 {
39808 int one = 1; int little = (int)*(unsigned char *)&one;
39809 unsigned char *bytes = (unsigned char *)&value;
39810 return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES),
39811 little, !is_unsigned);
39812 }
39813 }
39814
39815 /* CIntFromPy */
__Pyx_PyInt_As_char(PyObject * x)39816 static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *x) {
39817 const char neg_one = (char) ((char) 0 - (char) 1), const_zero = (char) 0;
39818 const int is_unsigned = neg_one > const_zero;
39819 #if PY_MAJOR_VERSION < 3
39820 if (likely(PyInt_Check(x))) {
39821 if (sizeof(char) < sizeof(long)) {
39822 __PYX_VERIFY_RETURN_INT(char, long, PyInt_AS_LONG(x))
39823 } else {
39824 long val = PyInt_AS_LONG(x);
39825 if (is_unsigned && unlikely(val < 0)) {
39826 goto raise_neg_overflow;
39827 }
39828 return (char) val;
39829 }
39830 } else
39831 #endif
39832 if (likely(PyLong_Check(x))) {
39833 if (is_unsigned) {
39834 #if CYTHON_USE_PYLONG_INTERNALS
39835 const digit* digits = ((PyLongObject*)x)->ob_digit;
39836 switch (Py_SIZE(x)) {
39837 case 0: return (char) 0;
39838 case 1: __PYX_VERIFY_RETURN_INT(char, digit, digits[0])
39839 case 2:
39840 if (8 * sizeof(char) > 1 * PyLong_SHIFT) {
39841 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
39842 __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
39843 } else if (8 * sizeof(char) >= 2 * PyLong_SHIFT) {
39844 return (char) (((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
39845 }
39846 }
39847 break;
39848 case 3:
39849 if (8 * sizeof(char) > 2 * PyLong_SHIFT) {
39850 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
39851 __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
39852 } else if (8 * sizeof(char) >= 3 * PyLong_SHIFT) {
39853 return (char) (((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
39854 }
39855 }
39856 break;
39857 case 4:
39858 if (8 * sizeof(char) > 3 * PyLong_SHIFT) {
39859 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
39860 __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
39861 } else if (8 * sizeof(char) >= 4 * PyLong_SHIFT) {
39862 return (char) (((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
39863 }
39864 }
39865 break;
39866 }
39867 #endif
39868 #if CYTHON_COMPILING_IN_CPYTHON
39869 if (unlikely(Py_SIZE(x) < 0)) {
39870 goto raise_neg_overflow;
39871 }
39872 #else
39873 {
39874 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
39875 if (unlikely(result < 0))
39876 return (char) -1;
39877 if (unlikely(result == 1))
39878 goto raise_neg_overflow;
39879 }
39880 #endif
39881 if (sizeof(char) <= sizeof(unsigned long)) {
39882 __PYX_VERIFY_RETURN_INT_EXC(char, unsigned long, PyLong_AsUnsignedLong(x))
39883 #ifdef HAVE_LONG_LONG
39884 } else if (sizeof(char) <= sizeof(unsigned PY_LONG_LONG)) {
39885 __PYX_VERIFY_RETURN_INT_EXC(char, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
39886 #endif
39887 }
39888 } else {
39889 #if CYTHON_USE_PYLONG_INTERNALS
39890 const digit* digits = ((PyLongObject*)x)->ob_digit;
39891 switch (Py_SIZE(x)) {
39892 case 0: return (char) 0;
39893 case -1: __PYX_VERIFY_RETURN_INT(char, sdigit, (sdigit) (-(sdigit)digits[0]))
39894 case 1: __PYX_VERIFY_RETURN_INT(char, digit, +digits[0])
39895 case -2:
39896 if (8 * sizeof(char) - 1 > 1 * PyLong_SHIFT) {
39897 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
39898 __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
39899 } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
39900 return (char) (((char)-1)*(((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
39901 }
39902 }
39903 break;
39904 case 2:
39905 if (8 * sizeof(char) > 1 * PyLong_SHIFT) {
39906 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
39907 __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
39908 } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
39909 return (char) ((((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
39910 }
39911 }
39912 break;
39913 case -3:
39914 if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
39915 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
39916 __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
39917 } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
39918 return (char) (((char)-1)*(((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
39919 }
39920 }
39921 break;
39922 case 3:
39923 if (8 * sizeof(char) > 2 * PyLong_SHIFT) {
39924 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
39925 __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
39926 } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
39927 return (char) ((((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
39928 }
39929 }
39930 break;
39931 case -4:
39932 if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
39933 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
39934 __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
39935 } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) {
39936 return (char) (((char)-1)*(((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
39937 }
39938 }
39939 break;
39940 case 4:
39941 if (8 * sizeof(char) > 3 * PyLong_SHIFT) {
39942 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
39943 __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
39944 } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) {
39945 return (char) ((((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
39946 }
39947 }
39948 break;
39949 }
39950 #endif
39951 if (sizeof(char) <= sizeof(long)) {
39952 __PYX_VERIFY_RETURN_INT_EXC(char, long, PyLong_AsLong(x))
39953 #ifdef HAVE_LONG_LONG
39954 } else if (sizeof(char) <= sizeof(PY_LONG_LONG)) {
39955 __PYX_VERIFY_RETURN_INT_EXC(char, PY_LONG_LONG, PyLong_AsLongLong(x))
39956 #endif
39957 }
39958 }
39959 {
39960 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
39961 PyErr_SetString(PyExc_RuntimeError,
39962 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
39963 #else
39964 char val;
39965 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
39966 #if PY_MAJOR_VERSION < 3
39967 if (likely(v) && !PyLong_Check(v)) {
39968 PyObject *tmp = v;
39969 v = PyNumber_Long(tmp);
39970 Py_DECREF(tmp);
39971 }
39972 #endif
39973 if (likely(v)) {
39974 int one = 1; int is_little = (int)*(unsigned char *)&one;
39975 unsigned char *bytes = (unsigned char *)&val;
39976 int ret = _PyLong_AsByteArray((PyLongObject *)v,
39977 bytes, sizeof(val),
39978 is_little, !is_unsigned);
39979 Py_DECREF(v);
39980 if (likely(!ret))
39981 return val;
39982 }
39983 #endif
39984 return (char) -1;
39985 }
39986 } else {
39987 char val;
39988 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
39989 if (!tmp) return (char) -1;
39990 val = __Pyx_PyInt_As_char(tmp);
39991 Py_DECREF(tmp);
39992 return val;
39993 }
39994 raise_overflow:
39995 PyErr_SetString(PyExc_OverflowError,
39996 "value too large to convert to char");
39997 return (char) -1;
39998 raise_neg_overflow:
39999 PyErr_SetString(PyExc_OverflowError,
40000 "can't convert negative value to char");
40001 return (char) -1;
40002 }
40003
40004 /* CIntFromPy */
__Pyx_PyInt_As_npy_int32(PyObject * x)40005 static CYTHON_INLINE npy_int32 __Pyx_PyInt_As_npy_int32(PyObject *x) {
40006 const npy_int32 neg_one = (npy_int32) ((npy_int32) 0 - (npy_int32) 1), const_zero = (npy_int32) 0;
40007 const int is_unsigned = neg_one > const_zero;
40008 #if PY_MAJOR_VERSION < 3
40009 if (likely(PyInt_Check(x))) {
40010 if (sizeof(npy_int32) < sizeof(long)) {
40011 __PYX_VERIFY_RETURN_INT(npy_int32, long, PyInt_AS_LONG(x))
40012 } else {
40013 long val = PyInt_AS_LONG(x);
40014 if (is_unsigned && unlikely(val < 0)) {
40015 goto raise_neg_overflow;
40016 }
40017 return (npy_int32) val;
40018 }
40019 } else
40020 #endif
40021 if (likely(PyLong_Check(x))) {
40022 if (is_unsigned) {
40023 #if CYTHON_USE_PYLONG_INTERNALS
40024 const digit* digits = ((PyLongObject*)x)->ob_digit;
40025 switch (Py_SIZE(x)) {
40026 case 0: return (npy_int32) 0;
40027 case 1: __PYX_VERIFY_RETURN_INT(npy_int32, digit, digits[0])
40028 case 2:
40029 if (8 * sizeof(npy_int32) > 1 * PyLong_SHIFT) {
40030 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40031 __PYX_VERIFY_RETURN_INT(npy_int32, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40032 } else if (8 * sizeof(npy_int32) >= 2 * PyLong_SHIFT) {
40033 return (npy_int32) (((((npy_int32)digits[1]) << PyLong_SHIFT) | (npy_int32)digits[0]));
40034 }
40035 }
40036 break;
40037 case 3:
40038 if (8 * sizeof(npy_int32) > 2 * PyLong_SHIFT) {
40039 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40040 __PYX_VERIFY_RETURN_INT(npy_int32, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40041 } else if (8 * sizeof(npy_int32) >= 3 * PyLong_SHIFT) {
40042 return (npy_int32) (((((((npy_int32)digits[2]) << PyLong_SHIFT) | (npy_int32)digits[1]) << PyLong_SHIFT) | (npy_int32)digits[0]));
40043 }
40044 }
40045 break;
40046 case 4:
40047 if (8 * sizeof(npy_int32) > 3 * PyLong_SHIFT) {
40048 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40049 __PYX_VERIFY_RETURN_INT(npy_int32, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40050 } else if (8 * sizeof(npy_int32) >= 4 * PyLong_SHIFT) {
40051 return (npy_int32) (((((((((npy_int32)digits[3]) << PyLong_SHIFT) | (npy_int32)digits[2]) << PyLong_SHIFT) | (npy_int32)digits[1]) << PyLong_SHIFT) | (npy_int32)digits[0]));
40052 }
40053 }
40054 break;
40055 }
40056 #endif
40057 #if CYTHON_COMPILING_IN_CPYTHON
40058 if (unlikely(Py_SIZE(x) < 0)) {
40059 goto raise_neg_overflow;
40060 }
40061 #else
40062 {
40063 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
40064 if (unlikely(result < 0))
40065 return (npy_int32) -1;
40066 if (unlikely(result == 1))
40067 goto raise_neg_overflow;
40068 }
40069 #endif
40070 if (sizeof(npy_int32) <= sizeof(unsigned long)) {
40071 __PYX_VERIFY_RETURN_INT_EXC(npy_int32, unsigned long, PyLong_AsUnsignedLong(x))
40072 #ifdef HAVE_LONG_LONG
40073 } else if (sizeof(npy_int32) <= sizeof(unsigned PY_LONG_LONG)) {
40074 __PYX_VERIFY_RETURN_INT_EXC(npy_int32, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
40075 #endif
40076 }
40077 } else {
40078 #if CYTHON_USE_PYLONG_INTERNALS
40079 const digit* digits = ((PyLongObject*)x)->ob_digit;
40080 switch (Py_SIZE(x)) {
40081 case 0: return (npy_int32) 0;
40082 case -1: __PYX_VERIFY_RETURN_INT(npy_int32, sdigit, (sdigit) (-(sdigit)digits[0]))
40083 case 1: __PYX_VERIFY_RETURN_INT(npy_int32, digit, +digits[0])
40084 case -2:
40085 if (8 * sizeof(npy_int32) - 1 > 1 * PyLong_SHIFT) {
40086 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40087 __PYX_VERIFY_RETURN_INT(npy_int32, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40088 } else if (8 * sizeof(npy_int32) - 1 > 2 * PyLong_SHIFT) {
40089 return (npy_int32) (((npy_int32)-1)*(((((npy_int32)digits[1]) << PyLong_SHIFT) | (npy_int32)digits[0])));
40090 }
40091 }
40092 break;
40093 case 2:
40094 if (8 * sizeof(npy_int32) > 1 * PyLong_SHIFT) {
40095 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40096 __PYX_VERIFY_RETURN_INT(npy_int32, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40097 } else if (8 * sizeof(npy_int32) - 1 > 2 * PyLong_SHIFT) {
40098 return (npy_int32) ((((((npy_int32)digits[1]) << PyLong_SHIFT) | (npy_int32)digits[0])));
40099 }
40100 }
40101 break;
40102 case -3:
40103 if (8 * sizeof(npy_int32) - 1 > 2 * PyLong_SHIFT) {
40104 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40105 __PYX_VERIFY_RETURN_INT(npy_int32, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40106 } else if (8 * sizeof(npy_int32) - 1 > 3 * PyLong_SHIFT) {
40107 return (npy_int32) (((npy_int32)-1)*(((((((npy_int32)digits[2]) << PyLong_SHIFT) | (npy_int32)digits[1]) << PyLong_SHIFT) | (npy_int32)digits[0])));
40108 }
40109 }
40110 break;
40111 case 3:
40112 if (8 * sizeof(npy_int32) > 2 * PyLong_SHIFT) {
40113 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40114 __PYX_VERIFY_RETURN_INT(npy_int32, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40115 } else if (8 * sizeof(npy_int32) - 1 > 3 * PyLong_SHIFT) {
40116 return (npy_int32) ((((((((npy_int32)digits[2]) << PyLong_SHIFT) | (npy_int32)digits[1]) << PyLong_SHIFT) | (npy_int32)digits[0])));
40117 }
40118 }
40119 break;
40120 case -4:
40121 if (8 * sizeof(npy_int32) - 1 > 3 * PyLong_SHIFT) {
40122 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40123 __PYX_VERIFY_RETURN_INT(npy_int32, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40124 } else if (8 * sizeof(npy_int32) - 1 > 4 * PyLong_SHIFT) {
40125 return (npy_int32) (((npy_int32)-1)*(((((((((npy_int32)digits[3]) << PyLong_SHIFT) | (npy_int32)digits[2]) << PyLong_SHIFT) | (npy_int32)digits[1]) << PyLong_SHIFT) | (npy_int32)digits[0])));
40126 }
40127 }
40128 break;
40129 case 4:
40130 if (8 * sizeof(npy_int32) > 3 * PyLong_SHIFT) {
40131 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40132 __PYX_VERIFY_RETURN_INT(npy_int32, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40133 } else if (8 * sizeof(npy_int32) - 1 > 4 * PyLong_SHIFT) {
40134 return (npy_int32) ((((((((((npy_int32)digits[3]) << PyLong_SHIFT) | (npy_int32)digits[2]) << PyLong_SHIFT) | (npy_int32)digits[1]) << PyLong_SHIFT) | (npy_int32)digits[0])));
40135 }
40136 }
40137 break;
40138 }
40139 #endif
40140 if (sizeof(npy_int32) <= sizeof(long)) {
40141 __PYX_VERIFY_RETURN_INT_EXC(npy_int32, long, PyLong_AsLong(x))
40142 #ifdef HAVE_LONG_LONG
40143 } else if (sizeof(npy_int32) <= sizeof(PY_LONG_LONG)) {
40144 __PYX_VERIFY_RETURN_INT_EXC(npy_int32, PY_LONG_LONG, PyLong_AsLongLong(x))
40145 #endif
40146 }
40147 }
40148 {
40149 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
40150 PyErr_SetString(PyExc_RuntimeError,
40151 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
40152 #else
40153 npy_int32 val;
40154 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
40155 #if PY_MAJOR_VERSION < 3
40156 if (likely(v) && !PyLong_Check(v)) {
40157 PyObject *tmp = v;
40158 v = PyNumber_Long(tmp);
40159 Py_DECREF(tmp);
40160 }
40161 #endif
40162 if (likely(v)) {
40163 int one = 1; int is_little = (int)*(unsigned char *)&one;
40164 unsigned char *bytes = (unsigned char *)&val;
40165 int ret = _PyLong_AsByteArray((PyLongObject *)v,
40166 bytes, sizeof(val),
40167 is_little, !is_unsigned);
40168 Py_DECREF(v);
40169 if (likely(!ret))
40170 return val;
40171 }
40172 #endif
40173 return (npy_int32) -1;
40174 }
40175 } else {
40176 npy_int32 val;
40177 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
40178 if (!tmp) return (npy_int32) -1;
40179 val = __Pyx_PyInt_As_npy_int32(tmp);
40180 Py_DECREF(tmp);
40181 return val;
40182 }
40183 raise_overflow:
40184 PyErr_SetString(PyExc_OverflowError,
40185 "value too large to convert to npy_int32");
40186 return (npy_int32) -1;
40187 raise_neg_overflow:
40188 PyErr_SetString(PyExc_OverflowError,
40189 "can't convert negative value to npy_int32");
40190 return (npy_int32) -1;
40191 }
40192
40193 /* CIntFromPy */
__Pyx_PyInt_As_short(PyObject * x)40194 static CYTHON_INLINE short __Pyx_PyInt_As_short(PyObject *x) {
40195 const short neg_one = (short) ((short) 0 - (short) 1), const_zero = (short) 0;
40196 const int is_unsigned = neg_one > const_zero;
40197 #if PY_MAJOR_VERSION < 3
40198 if (likely(PyInt_Check(x))) {
40199 if (sizeof(short) < sizeof(long)) {
40200 __PYX_VERIFY_RETURN_INT(short, long, PyInt_AS_LONG(x))
40201 } else {
40202 long val = PyInt_AS_LONG(x);
40203 if (is_unsigned && unlikely(val < 0)) {
40204 goto raise_neg_overflow;
40205 }
40206 return (short) val;
40207 }
40208 } else
40209 #endif
40210 if (likely(PyLong_Check(x))) {
40211 if (is_unsigned) {
40212 #if CYTHON_USE_PYLONG_INTERNALS
40213 const digit* digits = ((PyLongObject*)x)->ob_digit;
40214 switch (Py_SIZE(x)) {
40215 case 0: return (short) 0;
40216 case 1: __PYX_VERIFY_RETURN_INT(short, digit, digits[0])
40217 case 2:
40218 if (8 * sizeof(short) > 1 * PyLong_SHIFT) {
40219 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40220 __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40221 } else if (8 * sizeof(short) >= 2 * PyLong_SHIFT) {
40222 return (short) (((((short)digits[1]) << PyLong_SHIFT) | (short)digits[0]));
40223 }
40224 }
40225 break;
40226 case 3:
40227 if (8 * sizeof(short) > 2 * PyLong_SHIFT) {
40228 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40229 __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40230 } else if (8 * sizeof(short) >= 3 * PyLong_SHIFT) {
40231 return (short) (((((((short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0]));
40232 }
40233 }
40234 break;
40235 case 4:
40236 if (8 * sizeof(short) > 3 * PyLong_SHIFT) {
40237 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40238 __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40239 } else if (8 * sizeof(short) >= 4 * PyLong_SHIFT) {
40240 return (short) (((((((((short)digits[3]) << PyLong_SHIFT) | (short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0]));
40241 }
40242 }
40243 break;
40244 }
40245 #endif
40246 #if CYTHON_COMPILING_IN_CPYTHON
40247 if (unlikely(Py_SIZE(x) < 0)) {
40248 goto raise_neg_overflow;
40249 }
40250 #else
40251 {
40252 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
40253 if (unlikely(result < 0))
40254 return (short) -1;
40255 if (unlikely(result == 1))
40256 goto raise_neg_overflow;
40257 }
40258 #endif
40259 if (sizeof(short) <= sizeof(unsigned long)) {
40260 __PYX_VERIFY_RETURN_INT_EXC(short, unsigned long, PyLong_AsUnsignedLong(x))
40261 #ifdef HAVE_LONG_LONG
40262 } else if (sizeof(short) <= sizeof(unsigned PY_LONG_LONG)) {
40263 __PYX_VERIFY_RETURN_INT_EXC(short, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
40264 #endif
40265 }
40266 } else {
40267 #if CYTHON_USE_PYLONG_INTERNALS
40268 const digit* digits = ((PyLongObject*)x)->ob_digit;
40269 switch (Py_SIZE(x)) {
40270 case 0: return (short) 0;
40271 case -1: __PYX_VERIFY_RETURN_INT(short, sdigit, (sdigit) (-(sdigit)digits[0]))
40272 case 1: __PYX_VERIFY_RETURN_INT(short, digit, +digits[0])
40273 case -2:
40274 if (8 * sizeof(short) - 1 > 1 * PyLong_SHIFT) {
40275 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40276 __PYX_VERIFY_RETURN_INT(short, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40277 } else if (8 * sizeof(short) - 1 > 2 * PyLong_SHIFT) {
40278 return (short) (((short)-1)*(((((short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
40279 }
40280 }
40281 break;
40282 case 2:
40283 if (8 * sizeof(short) > 1 * PyLong_SHIFT) {
40284 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40285 __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40286 } else if (8 * sizeof(short) - 1 > 2 * PyLong_SHIFT) {
40287 return (short) ((((((short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
40288 }
40289 }
40290 break;
40291 case -3:
40292 if (8 * sizeof(short) - 1 > 2 * PyLong_SHIFT) {
40293 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40294 __PYX_VERIFY_RETURN_INT(short, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40295 } else if (8 * sizeof(short) - 1 > 3 * PyLong_SHIFT) {
40296 return (short) (((short)-1)*(((((((short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
40297 }
40298 }
40299 break;
40300 case 3:
40301 if (8 * sizeof(short) > 2 * PyLong_SHIFT) {
40302 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40303 __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40304 } else if (8 * sizeof(short) - 1 > 3 * PyLong_SHIFT) {
40305 return (short) ((((((((short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
40306 }
40307 }
40308 break;
40309 case -4:
40310 if (8 * sizeof(short) - 1 > 3 * PyLong_SHIFT) {
40311 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40312 __PYX_VERIFY_RETURN_INT(short, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40313 } else if (8 * sizeof(short) - 1 > 4 * PyLong_SHIFT) {
40314 return (short) (((short)-1)*(((((((((short)digits[3]) << PyLong_SHIFT) | (short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
40315 }
40316 }
40317 break;
40318 case 4:
40319 if (8 * sizeof(short) > 3 * PyLong_SHIFT) {
40320 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40321 __PYX_VERIFY_RETURN_INT(short, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40322 } else if (8 * sizeof(short) - 1 > 4 * PyLong_SHIFT) {
40323 return (short) ((((((((((short)digits[3]) << PyLong_SHIFT) | (short)digits[2]) << PyLong_SHIFT) | (short)digits[1]) << PyLong_SHIFT) | (short)digits[0])));
40324 }
40325 }
40326 break;
40327 }
40328 #endif
40329 if (sizeof(short) <= sizeof(long)) {
40330 __PYX_VERIFY_RETURN_INT_EXC(short, long, PyLong_AsLong(x))
40331 #ifdef HAVE_LONG_LONG
40332 } else if (sizeof(short) <= sizeof(PY_LONG_LONG)) {
40333 __PYX_VERIFY_RETURN_INT_EXC(short, PY_LONG_LONG, PyLong_AsLongLong(x))
40334 #endif
40335 }
40336 }
40337 {
40338 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
40339 PyErr_SetString(PyExc_RuntimeError,
40340 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
40341 #else
40342 short val;
40343 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
40344 #if PY_MAJOR_VERSION < 3
40345 if (likely(v) && !PyLong_Check(v)) {
40346 PyObject *tmp = v;
40347 v = PyNumber_Long(tmp);
40348 Py_DECREF(tmp);
40349 }
40350 #endif
40351 if (likely(v)) {
40352 int one = 1; int is_little = (int)*(unsigned char *)&one;
40353 unsigned char *bytes = (unsigned char *)&val;
40354 int ret = _PyLong_AsByteArray((PyLongObject *)v,
40355 bytes, sizeof(val),
40356 is_little, !is_unsigned);
40357 Py_DECREF(v);
40358 if (likely(!ret))
40359 return val;
40360 }
40361 #endif
40362 return (short) -1;
40363 }
40364 } else {
40365 short val;
40366 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
40367 if (!tmp) return (short) -1;
40368 val = __Pyx_PyInt_As_short(tmp);
40369 Py_DECREF(tmp);
40370 return val;
40371 }
40372 raise_overflow:
40373 PyErr_SetString(PyExc_OverflowError,
40374 "value too large to convert to short");
40375 return (short) -1;
40376 raise_neg_overflow:
40377 PyErr_SetString(PyExc_OverflowError,
40378 "can't convert negative value to short");
40379 return (short) -1;
40380 }
40381
40382 /* CIntFromPy */
__Pyx_PyInt_As_long(PyObject * x)40383 static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
40384 const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0;
40385 const int is_unsigned = neg_one > const_zero;
40386 #if PY_MAJOR_VERSION < 3
40387 if (likely(PyInt_Check(x))) {
40388 if (sizeof(long) < sizeof(long)) {
40389 __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
40390 } else {
40391 long val = PyInt_AS_LONG(x);
40392 if (is_unsigned && unlikely(val < 0)) {
40393 goto raise_neg_overflow;
40394 }
40395 return (long) val;
40396 }
40397 } else
40398 #endif
40399 if (likely(PyLong_Check(x))) {
40400 if (is_unsigned) {
40401 #if CYTHON_USE_PYLONG_INTERNALS
40402 const digit* digits = ((PyLongObject*)x)->ob_digit;
40403 switch (Py_SIZE(x)) {
40404 case 0: return (long) 0;
40405 case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
40406 case 2:
40407 if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
40408 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40409 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40410 } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
40411 return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
40412 }
40413 }
40414 break;
40415 case 3:
40416 if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
40417 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40418 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40419 } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
40420 return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
40421 }
40422 }
40423 break;
40424 case 4:
40425 if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
40426 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40427 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40428 } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
40429 return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
40430 }
40431 }
40432 break;
40433 }
40434 #endif
40435 #if CYTHON_COMPILING_IN_CPYTHON
40436 if (unlikely(Py_SIZE(x) < 0)) {
40437 goto raise_neg_overflow;
40438 }
40439 #else
40440 {
40441 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
40442 if (unlikely(result < 0))
40443 return (long) -1;
40444 if (unlikely(result == 1))
40445 goto raise_neg_overflow;
40446 }
40447 #endif
40448 if (sizeof(long) <= sizeof(unsigned long)) {
40449 __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
40450 #ifdef HAVE_LONG_LONG
40451 } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
40452 __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
40453 #endif
40454 }
40455 } else {
40456 #if CYTHON_USE_PYLONG_INTERNALS
40457 const digit* digits = ((PyLongObject*)x)->ob_digit;
40458 switch (Py_SIZE(x)) {
40459 case 0: return (long) 0;
40460 case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
40461 case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0])
40462 case -2:
40463 if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
40464 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40465 __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40466 } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
40467 return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
40468 }
40469 }
40470 break;
40471 case 2:
40472 if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
40473 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40474 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40475 } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
40476 return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
40477 }
40478 }
40479 break;
40480 case -3:
40481 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
40482 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40483 __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40484 } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
40485 return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
40486 }
40487 }
40488 break;
40489 case 3:
40490 if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
40491 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40492 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40493 } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
40494 return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
40495 }
40496 }
40497 break;
40498 case -4:
40499 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
40500 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40501 __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40502 } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
40503 return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
40504 }
40505 }
40506 break;
40507 case 4:
40508 if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
40509 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40510 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40511 } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
40512 return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
40513 }
40514 }
40515 break;
40516 }
40517 #endif
40518 if (sizeof(long) <= sizeof(long)) {
40519 __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
40520 #ifdef HAVE_LONG_LONG
40521 } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
40522 __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
40523 #endif
40524 }
40525 }
40526 {
40527 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
40528 PyErr_SetString(PyExc_RuntimeError,
40529 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
40530 #else
40531 long val;
40532 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
40533 #if PY_MAJOR_VERSION < 3
40534 if (likely(v) && !PyLong_Check(v)) {
40535 PyObject *tmp = v;
40536 v = PyNumber_Long(tmp);
40537 Py_DECREF(tmp);
40538 }
40539 #endif
40540 if (likely(v)) {
40541 int one = 1; int is_little = (int)*(unsigned char *)&one;
40542 unsigned char *bytes = (unsigned char *)&val;
40543 int ret = _PyLong_AsByteArray((PyLongObject *)v,
40544 bytes, sizeof(val),
40545 is_little, !is_unsigned);
40546 Py_DECREF(v);
40547 if (likely(!ret))
40548 return val;
40549 }
40550 #endif
40551 return (long) -1;
40552 }
40553 } else {
40554 long val;
40555 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
40556 if (!tmp) return (long) -1;
40557 val = __Pyx_PyInt_As_long(tmp);
40558 Py_DECREF(tmp);
40559 return val;
40560 }
40561 raise_overflow:
40562 PyErr_SetString(PyExc_OverflowError,
40563 "value too large to convert to long");
40564 return (long) -1;
40565 raise_neg_overflow:
40566 PyErr_SetString(PyExc_OverflowError,
40567 "can't convert negative value to long");
40568 return (long) -1;
40569 }
40570
40571 /* CIntFromPy */
__Pyx_PyInt_As_npy_int64(PyObject * x)40572 static CYTHON_INLINE npy_int64 __Pyx_PyInt_As_npy_int64(PyObject *x) {
40573 const npy_int64 neg_one = (npy_int64) ((npy_int64) 0 - (npy_int64) 1), const_zero = (npy_int64) 0;
40574 const int is_unsigned = neg_one > const_zero;
40575 #if PY_MAJOR_VERSION < 3
40576 if (likely(PyInt_Check(x))) {
40577 if (sizeof(npy_int64) < sizeof(long)) {
40578 __PYX_VERIFY_RETURN_INT(npy_int64, long, PyInt_AS_LONG(x))
40579 } else {
40580 long val = PyInt_AS_LONG(x);
40581 if (is_unsigned && unlikely(val < 0)) {
40582 goto raise_neg_overflow;
40583 }
40584 return (npy_int64) val;
40585 }
40586 } else
40587 #endif
40588 if (likely(PyLong_Check(x))) {
40589 if (is_unsigned) {
40590 #if CYTHON_USE_PYLONG_INTERNALS
40591 const digit* digits = ((PyLongObject*)x)->ob_digit;
40592 switch (Py_SIZE(x)) {
40593 case 0: return (npy_int64) 0;
40594 case 1: __PYX_VERIFY_RETURN_INT(npy_int64, digit, digits[0])
40595 case 2:
40596 if (8 * sizeof(npy_int64) > 1 * PyLong_SHIFT) {
40597 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40598 __PYX_VERIFY_RETURN_INT(npy_int64, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40599 } else if (8 * sizeof(npy_int64) >= 2 * PyLong_SHIFT) {
40600 return (npy_int64) (((((npy_int64)digits[1]) << PyLong_SHIFT) | (npy_int64)digits[0]));
40601 }
40602 }
40603 break;
40604 case 3:
40605 if (8 * sizeof(npy_int64) > 2 * PyLong_SHIFT) {
40606 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40607 __PYX_VERIFY_RETURN_INT(npy_int64, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40608 } else if (8 * sizeof(npy_int64) >= 3 * PyLong_SHIFT) {
40609 return (npy_int64) (((((((npy_int64)digits[2]) << PyLong_SHIFT) | (npy_int64)digits[1]) << PyLong_SHIFT) | (npy_int64)digits[0]));
40610 }
40611 }
40612 break;
40613 case 4:
40614 if (8 * sizeof(npy_int64) > 3 * PyLong_SHIFT) {
40615 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40616 __PYX_VERIFY_RETURN_INT(npy_int64, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40617 } else if (8 * sizeof(npy_int64) >= 4 * PyLong_SHIFT) {
40618 return (npy_int64) (((((((((npy_int64)digits[3]) << PyLong_SHIFT) | (npy_int64)digits[2]) << PyLong_SHIFT) | (npy_int64)digits[1]) << PyLong_SHIFT) | (npy_int64)digits[0]));
40619 }
40620 }
40621 break;
40622 }
40623 #endif
40624 #if CYTHON_COMPILING_IN_CPYTHON
40625 if (unlikely(Py_SIZE(x) < 0)) {
40626 goto raise_neg_overflow;
40627 }
40628 #else
40629 {
40630 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
40631 if (unlikely(result < 0))
40632 return (npy_int64) -1;
40633 if (unlikely(result == 1))
40634 goto raise_neg_overflow;
40635 }
40636 #endif
40637 if (sizeof(npy_int64) <= sizeof(unsigned long)) {
40638 __PYX_VERIFY_RETURN_INT_EXC(npy_int64, unsigned long, PyLong_AsUnsignedLong(x))
40639 #ifdef HAVE_LONG_LONG
40640 } else if (sizeof(npy_int64) <= sizeof(unsigned PY_LONG_LONG)) {
40641 __PYX_VERIFY_RETURN_INT_EXC(npy_int64, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
40642 #endif
40643 }
40644 } else {
40645 #if CYTHON_USE_PYLONG_INTERNALS
40646 const digit* digits = ((PyLongObject*)x)->ob_digit;
40647 switch (Py_SIZE(x)) {
40648 case 0: return (npy_int64) 0;
40649 case -1: __PYX_VERIFY_RETURN_INT(npy_int64, sdigit, (sdigit) (-(sdigit)digits[0]))
40650 case 1: __PYX_VERIFY_RETURN_INT(npy_int64, digit, +digits[0])
40651 case -2:
40652 if (8 * sizeof(npy_int64) - 1 > 1 * PyLong_SHIFT) {
40653 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40654 __PYX_VERIFY_RETURN_INT(npy_int64, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40655 } else if (8 * sizeof(npy_int64) - 1 > 2 * PyLong_SHIFT) {
40656 return (npy_int64) (((npy_int64)-1)*(((((npy_int64)digits[1]) << PyLong_SHIFT) | (npy_int64)digits[0])));
40657 }
40658 }
40659 break;
40660 case 2:
40661 if (8 * sizeof(npy_int64) > 1 * PyLong_SHIFT) {
40662 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40663 __PYX_VERIFY_RETURN_INT(npy_int64, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40664 } else if (8 * sizeof(npy_int64) - 1 > 2 * PyLong_SHIFT) {
40665 return (npy_int64) ((((((npy_int64)digits[1]) << PyLong_SHIFT) | (npy_int64)digits[0])));
40666 }
40667 }
40668 break;
40669 case -3:
40670 if (8 * sizeof(npy_int64) - 1 > 2 * PyLong_SHIFT) {
40671 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40672 __PYX_VERIFY_RETURN_INT(npy_int64, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40673 } else if (8 * sizeof(npy_int64) - 1 > 3 * PyLong_SHIFT) {
40674 return (npy_int64) (((npy_int64)-1)*(((((((npy_int64)digits[2]) << PyLong_SHIFT) | (npy_int64)digits[1]) << PyLong_SHIFT) | (npy_int64)digits[0])));
40675 }
40676 }
40677 break;
40678 case 3:
40679 if (8 * sizeof(npy_int64) > 2 * PyLong_SHIFT) {
40680 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40681 __PYX_VERIFY_RETURN_INT(npy_int64, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40682 } else if (8 * sizeof(npy_int64) - 1 > 3 * PyLong_SHIFT) {
40683 return (npy_int64) ((((((((npy_int64)digits[2]) << PyLong_SHIFT) | (npy_int64)digits[1]) << PyLong_SHIFT) | (npy_int64)digits[0])));
40684 }
40685 }
40686 break;
40687 case -4:
40688 if (8 * sizeof(npy_int64) - 1 > 3 * PyLong_SHIFT) {
40689 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40690 __PYX_VERIFY_RETURN_INT(npy_int64, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40691 } else if (8 * sizeof(npy_int64) - 1 > 4 * PyLong_SHIFT) {
40692 return (npy_int64) (((npy_int64)-1)*(((((((((npy_int64)digits[3]) << PyLong_SHIFT) | (npy_int64)digits[2]) << PyLong_SHIFT) | (npy_int64)digits[1]) << PyLong_SHIFT) | (npy_int64)digits[0])));
40693 }
40694 }
40695 break;
40696 case 4:
40697 if (8 * sizeof(npy_int64) > 3 * PyLong_SHIFT) {
40698 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40699 __PYX_VERIFY_RETURN_INT(npy_int64, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40700 } else if (8 * sizeof(npy_int64) - 1 > 4 * PyLong_SHIFT) {
40701 return (npy_int64) ((((((((((npy_int64)digits[3]) << PyLong_SHIFT) | (npy_int64)digits[2]) << PyLong_SHIFT) | (npy_int64)digits[1]) << PyLong_SHIFT) | (npy_int64)digits[0])));
40702 }
40703 }
40704 break;
40705 }
40706 #endif
40707 if (sizeof(npy_int64) <= sizeof(long)) {
40708 __PYX_VERIFY_RETURN_INT_EXC(npy_int64, long, PyLong_AsLong(x))
40709 #ifdef HAVE_LONG_LONG
40710 } else if (sizeof(npy_int64) <= sizeof(PY_LONG_LONG)) {
40711 __PYX_VERIFY_RETURN_INT_EXC(npy_int64, PY_LONG_LONG, PyLong_AsLongLong(x))
40712 #endif
40713 }
40714 }
40715 {
40716 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
40717 PyErr_SetString(PyExc_RuntimeError,
40718 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
40719 #else
40720 npy_int64 val;
40721 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
40722 #if PY_MAJOR_VERSION < 3
40723 if (likely(v) && !PyLong_Check(v)) {
40724 PyObject *tmp = v;
40725 v = PyNumber_Long(tmp);
40726 Py_DECREF(tmp);
40727 }
40728 #endif
40729 if (likely(v)) {
40730 int one = 1; int is_little = (int)*(unsigned char *)&one;
40731 unsigned char *bytes = (unsigned char *)&val;
40732 int ret = _PyLong_AsByteArray((PyLongObject *)v,
40733 bytes, sizeof(val),
40734 is_little, !is_unsigned);
40735 Py_DECREF(v);
40736 if (likely(!ret))
40737 return val;
40738 }
40739 #endif
40740 return (npy_int64) -1;
40741 }
40742 } else {
40743 npy_int64 val;
40744 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
40745 if (!tmp) return (npy_int64) -1;
40746 val = __Pyx_PyInt_As_npy_int64(tmp);
40747 Py_DECREF(tmp);
40748 return val;
40749 }
40750 raise_overflow:
40751 PyErr_SetString(PyExc_OverflowError,
40752 "value too large to convert to npy_int64");
40753 return (npy_int64) -1;
40754 raise_neg_overflow:
40755 PyErr_SetString(PyExc_OverflowError,
40756 "can't convert negative value to npy_int64");
40757 return (npy_int64) -1;
40758 }
40759
40760 /* CIntFromPy */
__Pyx_PyInt_As_int(PyObject * x)40761 static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
40762 const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0;
40763 const int is_unsigned = neg_one > const_zero;
40764 #if PY_MAJOR_VERSION < 3
40765 if (likely(PyInt_Check(x))) {
40766 if (sizeof(int) < sizeof(long)) {
40767 __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
40768 } else {
40769 long val = PyInt_AS_LONG(x);
40770 if (is_unsigned && unlikely(val < 0)) {
40771 goto raise_neg_overflow;
40772 }
40773 return (int) val;
40774 }
40775 } else
40776 #endif
40777 if (likely(PyLong_Check(x))) {
40778 if (is_unsigned) {
40779 #if CYTHON_USE_PYLONG_INTERNALS
40780 const digit* digits = ((PyLongObject*)x)->ob_digit;
40781 switch (Py_SIZE(x)) {
40782 case 0: return (int) 0;
40783 case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
40784 case 2:
40785 if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
40786 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40787 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40788 } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
40789 return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
40790 }
40791 }
40792 break;
40793 case 3:
40794 if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
40795 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40796 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40797 } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
40798 return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
40799 }
40800 }
40801 break;
40802 case 4:
40803 if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
40804 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40805 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40806 } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
40807 return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
40808 }
40809 }
40810 break;
40811 }
40812 #endif
40813 #if CYTHON_COMPILING_IN_CPYTHON
40814 if (unlikely(Py_SIZE(x) < 0)) {
40815 goto raise_neg_overflow;
40816 }
40817 #else
40818 {
40819 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
40820 if (unlikely(result < 0))
40821 return (int) -1;
40822 if (unlikely(result == 1))
40823 goto raise_neg_overflow;
40824 }
40825 #endif
40826 if (sizeof(int) <= sizeof(unsigned long)) {
40827 __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
40828 #ifdef HAVE_LONG_LONG
40829 } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
40830 __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
40831 #endif
40832 }
40833 } else {
40834 #if CYTHON_USE_PYLONG_INTERNALS
40835 const digit* digits = ((PyLongObject*)x)->ob_digit;
40836 switch (Py_SIZE(x)) {
40837 case 0: return (int) 0;
40838 case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
40839 case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0])
40840 case -2:
40841 if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
40842 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40843 __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40844 } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
40845 return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
40846 }
40847 }
40848 break;
40849 case 2:
40850 if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
40851 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
40852 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40853 } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
40854 return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
40855 }
40856 }
40857 break;
40858 case -3:
40859 if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
40860 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40861 __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40862 } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
40863 return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
40864 }
40865 }
40866 break;
40867 case 3:
40868 if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
40869 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
40870 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40871 } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
40872 return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
40873 }
40874 }
40875 break;
40876 case -4:
40877 if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
40878 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40879 __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40880 } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
40881 return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
40882 }
40883 }
40884 break;
40885 case 4:
40886 if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
40887 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
40888 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
40889 } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
40890 return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
40891 }
40892 }
40893 break;
40894 }
40895 #endif
40896 if (sizeof(int) <= sizeof(long)) {
40897 __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
40898 #ifdef HAVE_LONG_LONG
40899 } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
40900 __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
40901 #endif
40902 }
40903 }
40904 {
40905 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
40906 PyErr_SetString(PyExc_RuntimeError,
40907 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
40908 #else
40909 int val;
40910 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
40911 #if PY_MAJOR_VERSION < 3
40912 if (likely(v) && !PyLong_Check(v)) {
40913 PyObject *tmp = v;
40914 v = PyNumber_Long(tmp);
40915 Py_DECREF(tmp);
40916 }
40917 #endif
40918 if (likely(v)) {
40919 int one = 1; int is_little = (int)*(unsigned char *)&one;
40920 unsigned char *bytes = (unsigned char *)&val;
40921 int ret = _PyLong_AsByteArray((PyLongObject *)v,
40922 bytes, sizeof(val),
40923 is_little, !is_unsigned);
40924 Py_DECREF(v);
40925 if (likely(!ret))
40926 return val;
40927 }
40928 #endif
40929 return (int) -1;
40930 }
40931 } else {
40932 int val;
40933 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
40934 if (!tmp) return (int) -1;
40935 val = __Pyx_PyInt_As_int(tmp);
40936 Py_DECREF(tmp);
40937 return val;
40938 }
40939 raise_overflow:
40940 PyErr_SetString(PyExc_OverflowError,
40941 "value too large to convert to int");
40942 return (int) -1;
40943 raise_neg_overflow:
40944 PyErr_SetString(PyExc_OverflowError,
40945 "can't convert negative value to int");
40946 return (int) -1;
40947 }
40948
40949 /* FastTypeChecks */
40950 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx_InBases(PyTypeObject * a,PyTypeObject * b)40951 static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) {
40952 while (a) {
40953 a = a->tp_base;
40954 if (a == b)
40955 return 1;
40956 }
40957 return b == &PyBaseObject_Type;
40958 }
__Pyx_IsSubtype(PyTypeObject * a,PyTypeObject * b)40959 static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) {
40960 PyObject *mro;
40961 if (a == b) return 1;
40962 mro = a->tp_mro;
40963 if (likely(mro)) {
40964 Py_ssize_t i, n;
40965 n = PyTuple_GET_SIZE(mro);
40966 for (i = 0; i < n; i++) {
40967 if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b)
40968 return 1;
40969 }
40970 return 0;
40971 }
40972 return __Pyx_InBases(a, b);
40973 }
40974 #if PY_MAJOR_VERSION == 2
__Pyx_inner_PyErr_GivenExceptionMatches2(PyObject * err,PyObject * exc_type1,PyObject * exc_type2)40975 static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) {
40976 PyObject *exception, *value, *tb;
40977 int res;
40978 __Pyx_PyThreadState_declare
40979 __Pyx_PyThreadState_assign
40980 __Pyx_ErrFetch(&exception, &value, &tb);
40981 res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0;
40982 if (unlikely(res == -1)) {
40983 PyErr_WriteUnraisable(err);
40984 res = 0;
40985 }
40986 if (!res) {
40987 res = PyObject_IsSubclass(err, exc_type2);
40988 if (unlikely(res == -1)) {
40989 PyErr_WriteUnraisable(err);
40990 res = 0;
40991 }
40992 }
40993 __Pyx_ErrRestore(exception, value, tb);
40994 return res;
40995 }
40996 #else
__Pyx_inner_PyErr_GivenExceptionMatches2(PyObject * err,PyObject * exc_type1,PyObject * exc_type2)40997 static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) {
40998 int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0;
40999 if (!res) {
41000 res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2);
41001 }
41002 return res;
41003 }
41004 #endif
__Pyx_PyErr_GivenExceptionMatchesTuple(PyObject * exc_type,PyObject * tuple)41005 static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
41006 Py_ssize_t i, n;
41007 assert(PyExceptionClass_Check(exc_type));
41008 n = PyTuple_GET_SIZE(tuple);
41009 #if PY_MAJOR_VERSION >= 3
41010 for (i=0; i<n; i++) {
41011 if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
41012 }
41013 #endif
41014 for (i=0; i<n; i++) {
41015 PyObject *t = PyTuple_GET_ITEM(tuple, i);
41016 #if PY_MAJOR_VERSION < 3
41017 if (likely(exc_type == t)) return 1;
41018 #endif
41019 if (likely(PyExceptionClass_Check(t))) {
41020 if (__Pyx_inner_PyErr_GivenExceptionMatches2(exc_type, NULL, t)) return 1;
41021 } else {
41022 }
41023 }
41024 return 0;
41025 }
__Pyx_PyErr_GivenExceptionMatches(PyObject * err,PyObject * exc_type)41026 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) {
41027 if (likely(err == exc_type)) return 1;
41028 if (likely(PyExceptionClass_Check(err))) {
41029 if (likely(PyExceptionClass_Check(exc_type))) {
41030 return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type);
41031 } else if (likely(PyTuple_Check(exc_type))) {
41032 return __Pyx_PyErr_GivenExceptionMatchesTuple(err, exc_type);
41033 } else {
41034 }
41035 }
41036 return PyErr_GivenExceptionMatches(err, exc_type);
41037 }
__Pyx_PyErr_GivenExceptionMatches2(PyObject * err,PyObject * exc_type1,PyObject * exc_type2)41038 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) {
41039 assert(PyExceptionClass_Check(exc_type1));
41040 assert(PyExceptionClass_Check(exc_type2));
41041 if (likely(err == exc_type1 || err == exc_type2)) return 1;
41042 if (likely(PyExceptionClass_Check(err))) {
41043 return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2);
41044 }
41045 return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2));
41046 }
41047 #endif
41048
41049 /* CheckBinaryVersion */
__Pyx_check_binary_version(void)41050 static int __Pyx_check_binary_version(void) {
41051 char ctversion[4], rtversion[4];
41052 PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
41053 PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
41054 if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
41055 char message[200];
41056 PyOS_snprintf(message, sizeof(message),
41057 "compiletime version %s of module '%.100s' "
41058 "does not match runtime version %s",
41059 ctversion, __Pyx_MODULE_NAME, rtversion);
41060 return PyErr_WarnEx(NULL, message, 1);
41061 }
41062 return 0;
41063 }
41064
41065 /* InitStrings */
__Pyx_InitStrings(__Pyx_StringTabEntry * t)41066 static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
41067 while (t->p) {
41068 #if PY_MAJOR_VERSION < 3
41069 if (t->is_unicode) {
41070 *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
41071 } else if (t->intern) {
41072 *t->p = PyString_InternFromString(t->s);
41073 } else {
41074 *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
41075 }
41076 #else
41077 if (t->is_unicode | t->is_str) {
41078 if (t->intern) {
41079 *t->p = PyUnicode_InternFromString(t->s);
41080 } else if (t->encoding) {
41081 *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
41082 } else {
41083 *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
41084 }
41085 } else {
41086 *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
41087 }
41088 #endif
41089 if (!*t->p)
41090 return -1;
41091 if (PyObject_Hash(*t->p) == -1)
41092 return -1;
41093 ++t;
41094 }
41095 return 0;
41096 }
41097
__Pyx_PyUnicode_FromString(const char * c_str)41098 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
41099 return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
41100 }
__Pyx_PyObject_AsString(PyObject * o)41101 static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) {
41102 Py_ssize_t ignore;
41103 return __Pyx_PyObject_AsStringAndSize(o, &ignore);
41104 }
41105 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
41106 #if !CYTHON_PEP393_ENABLED
__Pyx_PyUnicode_AsStringAndSize(PyObject * o,Py_ssize_t * length)41107 static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
41108 char* defenc_c;
41109 PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
41110 if (!defenc) return NULL;
41111 defenc_c = PyBytes_AS_STRING(defenc);
41112 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
41113 {
41114 char* end = defenc_c + PyBytes_GET_SIZE(defenc);
41115 char* c;
41116 for (c = defenc_c; c < end; c++) {
41117 if ((unsigned char) (*c) >= 128) {
41118 PyUnicode_AsASCIIString(o);
41119 return NULL;
41120 }
41121 }
41122 }
41123 #endif
41124 *length = PyBytes_GET_SIZE(defenc);
41125 return defenc_c;
41126 }
41127 #else
__Pyx_PyUnicode_AsStringAndSize(PyObject * o,Py_ssize_t * length)41128 static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
41129 if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL;
41130 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
41131 if (likely(PyUnicode_IS_ASCII(o))) {
41132 *length = PyUnicode_GET_LENGTH(o);
41133 return PyUnicode_AsUTF8(o);
41134 } else {
41135 PyUnicode_AsASCIIString(o);
41136 return NULL;
41137 }
41138 #else
41139 return PyUnicode_AsUTF8AndSize(o, length);
41140 #endif
41141 }
41142 #endif
41143 #endif
__Pyx_PyObject_AsStringAndSize(PyObject * o,Py_ssize_t * length)41144 static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
41145 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
41146 if (
41147 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
41148 __Pyx_sys_getdefaultencoding_not_ascii &&
41149 #endif
41150 PyUnicode_Check(o)) {
41151 return __Pyx_PyUnicode_AsStringAndSize(o, length);
41152 } else
41153 #endif
41154 #if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
41155 if (PyByteArray_Check(o)) {
41156 *length = PyByteArray_GET_SIZE(o);
41157 return PyByteArray_AS_STRING(o);
41158 } else
41159 #endif
41160 {
41161 char* result;
41162 int r = PyBytes_AsStringAndSize(o, &result, length);
41163 if (unlikely(r < 0)) {
41164 return NULL;
41165 } else {
41166 return result;
41167 }
41168 }
41169 }
__Pyx_PyObject_IsTrue(PyObject * x)41170 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
41171 int is_true = x == Py_True;
41172 if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
41173 else return PyObject_IsTrue(x);
41174 }
__Pyx_PyObject_IsTrueAndDecref(PyObject * x)41175 static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) {
41176 int retval;
41177 if (unlikely(!x)) return -1;
41178 retval = __Pyx_PyObject_IsTrue(x);
41179 Py_DECREF(x);
41180 return retval;
41181 }
__Pyx_PyNumber_IntOrLongWrongResultType(PyObject * result,const char * type_name)41182 static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) {
41183 #if PY_MAJOR_VERSION >= 3
41184 if (PyLong_Check(result)) {
41185 if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1,
41186 "__int__ returned non-int (type %.200s). "
41187 "The ability to return an instance of a strict subclass of int "
41188 "is deprecated, and may be removed in a future version of Python.",
41189 Py_TYPE(result)->tp_name)) {
41190 Py_DECREF(result);
41191 return NULL;
41192 }
41193 return result;
41194 }
41195 #endif
41196 PyErr_Format(PyExc_TypeError,
41197 "__%.4s__ returned non-%.4s (type %.200s)",
41198 type_name, type_name, Py_TYPE(result)->tp_name);
41199 Py_DECREF(result);
41200 return NULL;
41201 }
__Pyx_PyNumber_IntOrLong(PyObject * x)41202 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
41203 #if CYTHON_USE_TYPE_SLOTS
41204 PyNumberMethods *m;
41205 #endif
41206 const char *name = NULL;
41207 PyObject *res = NULL;
41208 #if PY_MAJOR_VERSION < 3
41209 if (likely(PyInt_Check(x) || PyLong_Check(x)))
41210 #else
41211 if (likely(PyLong_Check(x)))
41212 #endif
41213 return __Pyx_NewRef(x);
41214 #if CYTHON_USE_TYPE_SLOTS
41215 m = Py_TYPE(x)->tp_as_number;
41216 #if PY_MAJOR_VERSION < 3
41217 if (m && m->nb_int) {
41218 name = "int";
41219 res = m->nb_int(x);
41220 }
41221 else if (m && m->nb_long) {
41222 name = "long";
41223 res = m->nb_long(x);
41224 }
41225 #else
41226 if (likely(m && m->nb_int)) {
41227 name = "int";
41228 res = m->nb_int(x);
41229 }
41230 #endif
41231 #else
41232 if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) {
41233 res = PyNumber_Int(x);
41234 }
41235 #endif
41236 if (likely(res)) {
41237 #if PY_MAJOR_VERSION < 3
41238 if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) {
41239 #else
41240 if (unlikely(!PyLong_CheckExact(res))) {
41241 #endif
41242 return __Pyx_PyNumber_IntOrLongWrongResultType(res, name);
41243 }
41244 }
41245 else if (!PyErr_Occurred()) {
41246 PyErr_SetString(PyExc_TypeError,
41247 "an integer is required");
41248 }
41249 return res;
41250 }
41251 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
41252 Py_ssize_t ival;
41253 PyObject *x;
41254 #if PY_MAJOR_VERSION < 3
41255 if (likely(PyInt_CheckExact(b))) {
41256 if (sizeof(Py_ssize_t) >= sizeof(long))
41257 return PyInt_AS_LONG(b);
41258 else
41259 return PyInt_AsSsize_t(b);
41260 }
41261 #endif
41262 if (likely(PyLong_CheckExact(b))) {
41263 #if CYTHON_USE_PYLONG_INTERNALS
41264 const digit* digits = ((PyLongObject*)b)->ob_digit;
41265 const Py_ssize_t size = Py_SIZE(b);
41266 if (likely(__Pyx_sst_abs(size) <= 1)) {
41267 ival = likely(size) ? digits[0] : 0;
41268 if (size == -1) ival = -ival;
41269 return ival;
41270 } else {
41271 switch (size) {
41272 case 2:
41273 if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
41274 return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
41275 }
41276 break;
41277 case -2:
41278 if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
41279 return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
41280 }
41281 break;
41282 case 3:
41283 if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
41284 return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
41285 }
41286 break;
41287 case -3:
41288 if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
41289 return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
41290 }
41291 break;
41292 case 4:
41293 if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
41294 return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
41295 }
41296 break;
41297 case -4:
41298 if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
41299 return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
41300 }
41301 break;
41302 }
41303 }
41304 #endif
41305 return PyLong_AsSsize_t(b);
41306 }
41307 x = PyNumber_Index(b);
41308 if (!x) return -1;
41309 ival = PyInt_AsSsize_t(x);
41310 Py_DECREF(x);
41311 return ival;
41312 }
41313 static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) {
41314 return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False);
41315 }
41316 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
41317 return PyInt_FromSize_t(ival);
41318 }
41319
41320
41321 #endif /* Py_PYTHON_H */
41322