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Searched refs:__pyx_v_rval (Results 1 – 12 of 12) sorted by relevance

/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/bbi/
H A Dcirtree_file.c2375 PyObject *__pyx_v_rval = 0; in __pyx_pw_2bx_3bbi_12cirtree_file_11CIRTreeFile_5r_find_overlapping() local
2468 __pyx_v_rval = values[5]; in __pyx_pw_2bx_3bbi_12cirtree_file_11CIRTreeFile_5r_find_overlapping()
2894 PyObject *__pyx_v_rval = 0; in __pyx_pw_2bx_3bbi_12cirtree_file_11CIRTreeFile_7r_find_overlapping_leaf() local
2987 __pyx_v_rval = values[4]; in __pyx_pw_2bx_3bbi_12cirtree_file_11CIRTreeFile_7r_find_overlapping_leaf()
3321 PyObject *__pyx_v_rval = 0; in __pyx_pw_2bx_3bbi_12cirtree_file_11CIRTreeFile_9r_find_overlapping_parent() local
3414 __pyx_v_rval = values[4]; in __pyx_pw_2bx_3bbi_12cirtree_file_11CIRTreeFile_9r_find_overlapping_parent()
3905 PyObject *__pyx_v_rval = NULL; in __pyx_pf_2bx_3bbi_12cirtree_file_11CIRTreeFile_10find_overlapping_blocks() local
4003 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_2bx_3bbi_12cirtree_file_11CIRTreeFile_10find_overlapping_blocks()
4026 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_2bx_3bbi_12cirtree_file_11CIRTreeFile_10find_overlapping_blocks()
4027 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_3bbi_12cirtree_file_11CIRTreeFile_10find_overlapping_blocks()
[all …]
H A Dbbi_file.c8414 PyObject *__pyx_v_rval = NULL; in __pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query() local
8628 __pyx_v_rval = ((PyObject*)__pyx_t_1); in __pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query()
8869 __Pyx_INCREF(__pyx_v_rval); in __pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query()
8870 __pyx_r = __pyx_v_rval; in __pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query()
8895 __Pyx_XDECREF(__pyx_v_rval); in __pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query()
10358 PyObject *__pyx_v_rval = NULL; in __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region() local
10417 __pyx_v_rval = __pyx_t_1; in __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region()
11183 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region()
11184 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region()
11209 __Pyx_XDECREF(__pyx_v_rval); in __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region()
[all …]
H A Dbigbed_file.c4841 PyObject *__pyx_v_rval = NULL; in __pyx_f_2bx_3bbi_11bigbed_file_10BigBedFile_get() local
5129 __pyx_v_rval = ((PyObject*)__pyx_t_6); in __pyx_f_2bx_3bbi_11bigbed_file_10BigBedFile_get()
5329 …__pyx_t_15 = __Pyx_PyList_Append(__pyx_v_rval, __pyx_t_5); if (unlikely(__pyx_t_15 == ((int)-1))) … in __pyx_f_2bx_3bbi_11bigbed_file_10BigBedFile_get()
5350 __Pyx_INCREF(__pyx_v_rval); in __pyx_f_2bx_3bbi_11bigbed_file_10BigBedFile_get()
5351 __pyx_r = __pyx_v_rval; in __pyx_f_2bx_3bbi_11bigbed_file_10BigBedFile_get()
5378 __Pyx_XDECREF(__pyx_v_rval); in __pyx_f_2bx_3bbi_11bigbed_file_10BigBedFile_get()
/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/motif/
H A D_pwm.c1252 PyArrayObject *__pyx_v_rval = 0; in __pyx_pw_2bx_5motif_4_pwm_1score_string() local
1315 __pyx_v_rval = ((PyArrayObject *)values[3]); in __pyx_pw_2bx_5motif_4_pwm_1score_string()
1327 …if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_rval), __pyx_ptype_2bx_5motif_4_pwm_ndarray, … in __pyx_pw_2bx_5motif_4_pwm_1score_string()
1328 …_pwm_score_string(__pyx_self, __pyx_v_matrix, __pyx_v_char_to_index, __pyx_v_string, __pyx_v_rval); in __pyx_pw_2bx_5motif_4_pwm_1score_string()
1339 …rix, PyArrayObject *__pyx_v_char_to_index, PyObject *__pyx_v_string, PyArrayObject *__pyx_v_rval) { in __pyx_pf_2bx_5motif_4_pwm_score_string() argument
1533 …(((npy_float32 *)(__pyx_v_rval->data + (__pyx_v_i * (__pyx_v_rval->strides[0]))))[0]) = __pyx_v_sc… in __pyx_pf_2bx_5motif_4_pwm_score_string()
1578 PyArrayObject *__pyx_v_rval = 0; in __pyx_pw_2bx_5motif_4_pwm_3score_string_with_gaps() local
1641 __pyx_v_rval = ((PyArrayObject *)values[3]); in __pyx_pw_2bx_5motif_4_pwm_3score_string_with_gaps()
1653 …if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_rval), __pyx_ptype_2bx_5motif_4_pwm_ndarray, … in __pyx_pw_2bx_5motif_4_pwm_3score_string_with_gaps()
1654 …_string_with_gaps(__pyx_self, __pyx_v_matrix, __pyx_v_char_to_index, __pyx_v_string, __pyx_v_rval); in __pyx_pw_2bx_5motif_4_pwm_3score_string_with_gaps()
[all …]
/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/
H A D_seqmapping.c1866 __pyx_v_rval = __pyx_t_2; in __pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate()
1906 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate()
1907 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate()
2069 __pyx_v_rval = __pyx_t_3; in __pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list()
2246 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list()
2247 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list()
2531 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_10reverse_map()
3245 __pyx_v_rval = __pyx_t_4; in __pyx_pf_2bx_11_seqmapping_15IntToIntMapping_6translate()
3347 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_11_seqmapping_15IntToIntMapping_6translate()
4753 __pyx_v_rval = __pyx_t_1; in __pyx_pf_2bx_11_seqmapping_15IntToIntMapping_22get_table()
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/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/misc/
H A D_seekbzip2.c1826 PyObject *__pyx_v_rval = 0; in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_6readline() local
1915 __pyx_v_rval = __pyx_t_2; in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_6readline()
1925 __pyx_v_p_rval = PyBytes_AsString(__pyx_v_rval); in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_6readline()
2053 …__pyx_t_4 = __Pyx_PyList_Append(__pyx_v_chunks, __pyx_v_rval); if (unlikely(__pyx_t_4 == ((int)-1)… in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_6readline()
2101 __Pyx_DECREF_SET(__pyx_v_rval, __pyx_t_2); in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_6readline()
2111 __pyx_v_p_rval = PyBytes_AsString(__pyx_v_rval); in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_6readline()
2345 __Pyx_XDECREF(__pyx_v_rval); in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_6readline()
2387 PyObject *__pyx_v_rval = 0; in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_8read() local
2450 __pyx_v_rval = __pyx_t_2; in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_8read()
2460 __pyx_v_p_rval = PyBytes_AsString(__pyx_v_rval); in __pyx_pf_2bx_4misc_10_seekbzip2_9SeekBzip2_8read()
[all …]
H A Dbgzf.c1635 PyObject *__pyx_v_rval = 0; in __pyx_pf_2bx_4misc_4bgzf_8BGZFFile_4read() local
1653 __pyx_v_rval = __pyx_t_1; in __pyx_pf_2bx_4misc_4bgzf_8BGZFFile_4read()
1663 (void)(bgzf_read(__pyx_v_self->bgzf, PyBytes_AsString(__pyx_v_rval), __pyx_v_length)); in __pyx_pf_2bx_4misc_4bgzf_8BGZFFile_4read()
1673 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_2bx_4misc_4bgzf_8BGZFFile_4read()
1674 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_4misc_4bgzf_8BGZFFile_4read()
1691 __Pyx_XDECREF(__pyx_v_rval); in __pyx_pf_2bx_4misc_4bgzf_8BGZFFile_4read()
/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/intseq/
H A Dngramcount.c1377 PyObject *__pyx_v_rval = NULL; in __pyx_pf_2bx_6intseq_10ngramcount_count_ngrams() local
1611 __pyx_v_rval = __pyx_t_7; in __pyx_pf_2bx_6intseq_10ngramcount_count_ngrams()
1643 …__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_rval, __pyx_n_s_array_struct); if (unlikely(!__pyx_t… in __pyx_pf_2bx_6intseq_10ngramcount_count_ngrams()
1834 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_2bx_6intseq_10ngramcount_count_ngrams()
1835 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_6intseq_10ngramcount_count_ngrams()
1857 __Pyx_XDECREF(__pyx_v_rval); in __pyx_pf_2bx_6intseq_10ngramcount_count_ngrams()
1872 …0ngramcount__count_ngrams(int *__pyx_v_ints, int __pyx_v_n_ints, int *__pyx_v_rval, int __pyx_v_n,… in __pyx_f_2bx_6intseq_10ngramcount__count_ngrams() argument
2030 (__pyx_v_rval[__pyx_v_index]) = ((__pyx_v_rval[__pyx_v_index]) + 1); in __pyx_f_2bx_6intseq_10ngramcount__count_ngrams()
/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/seq/
H A D_nib.c1303 PyObject *__pyx_v_rval = NULL; in __pyx_pf_2bx_3seq_4_nib_translate_raw_data() local
1356 __pyx_v_rval = __pyx_t_2; in __pyx_pf_2bx_3seq_4_nib_translate_raw_data()
1366 __pyx_v_p_rval = PyBytes_AsString(__pyx_v_rval); in __pyx_pf_2bx_3seq_4_nib_translate_raw_data()
1525 …__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_rval, __pyx_n_s_decode); if (unlikely(!__pyx_t_4)) _… in __pyx_pf_2bx_3seq_4_nib_translate_raw_data()
1562 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_2bx_3seq_4_nib_translate_raw_data()
1563 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_3seq_4_nib_translate_raw_data()
1583 __Pyx_XDECREF(__pyx_v_rval); in __pyx_pf_2bx_3seq_4_nib_translate_raw_data()
/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/arrays/
H A Darray_tree.c2603 PyObject *__pyx_v_rval = NULL; in __pyx_pf_2bx_6arrays_10array_tree_array_tree_dict_from_reader() local
2641 __pyx_v_rval = ((PyObject*)__pyx_t_1); in __pyx_pf_2bx_6arrays_10array_tree_array_tree_dict_from_reader()
2802 …__pyx_t_12 = (__Pyx_PyDict_ContainsTF(__pyx_v_chrom, __pyx_v_rval, Py_NE)); if (unlikely(__pyx_t_1… in __pyx_pf_2bx_6arrays_10array_tree_array_tree_dict_from_reader()
2875 …if (unlikely(PyDict_SetItem(__pyx_v_rval, __pyx_v_chrom, __pyx_t_7) < 0)) __PYX_ERR(0, 73, __pyx_L… in __pyx_pf_2bx_6arrays_10array_tree_array_tree_dict_from_reader()
2894 …__pyx_t_7 = __Pyx_PyDict_GetItem(__pyx_v_rval, __pyx_v_chrom); if (unlikely(!__pyx_t_7)) __PYX_ERR… in __pyx_pf_2bx_6arrays_10array_tree_array_tree_dict_from_reader()
2985 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_2bx_6arrays_10array_tree_array_tree_dict_from_reader()
2986 __pyx_r = __pyx_v_rval; in __pyx_pf_2bx_6arrays_10array_tree_array_tree_dict_from_reader()
3010 __Pyx_XDECREF(__pyx_v_rval); in __pyx_pf_2bx_6arrays_10array_tree_array_tree_dict_from_reader()
/dports/biology/py-pysam/pysam-0.18.0/pysam/
H A Dlibchtslib.c11185 int __pyx_v_rval; in __pyx_pf_5pysam_10libchtslib_7HTSFile_18add_hts_options() local
11281 __pyx_v_rval = hts_opt_add((&__pyx_v_opts), __pyx_t_6); in __pyx_pf_5pysam_10libchtslib_7HTSFile_18add_hts_options()
11290 __pyx_t_1 = ((__pyx_v_rval != 0) != 0); in __pyx_pf_5pysam_10libchtslib_7HTSFile_18add_hts_options()
11388 __pyx_v_rval = hts_opt_apply(__pyx_v_self->htsfile, __pyx_v_opts); in __pyx_pf_5pysam_10libchtslib_7HTSFile_18add_hts_options()
11397 __pyx_t_1 = ((__pyx_v_rval != 0) != 0); in __pyx_pf_5pysam_10libchtslib_7HTSFile_18add_hts_options()
/dports/net/py-pynmsg/pynmsg-0.5.0/
H A D_nmsg.c7931 PyObject *__pyx_v_rval = NULL; in __pyx_pf_5_nmsg_7message_16to_json() local
8054 __pyx_v_rval = __pyx_t_3; in __pyx_pf_5_nmsg_7message_16to_json()
8076 __Pyx_INCREF(__pyx_v_rval); in __pyx_pf_5_nmsg_7message_16to_json()
8077 __Pyx_GIVEREF(__pyx_v_rval); in __pyx_pf_5_nmsg_7message_16to_json()
8078 PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_rval); in __pyx_pf_5_nmsg_7message_16to_json()
8104 __Pyx_XDECREF(__pyx_v_rval); in __pyx_pf_5_nmsg_7message_16to_json()