1 /* Generated by Cython 0.29.25 */
2
3 #ifndef PY_SSIZE_T_CLEAN
4 #define PY_SSIZE_T_CLEAN
5 #endif /* PY_SSIZE_T_CLEAN */
6 #include "Python.h"
7 #ifndef Py_PYTHON_H
8 #error Python headers needed to compile C extensions, please install development version of Python.
9 #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
10 #error Cython requires Python 2.6+ or Python 3.3+.
11 #else
12 #define CYTHON_ABI "0_29_25"
13 #define CYTHON_HEX_VERSION 0x001D19F0
14 #define CYTHON_FUTURE_DIVISION 0
15 #include <stddef.h>
16 #ifndef offsetof
17 #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
18 #endif
19 #if !defined(WIN32) && !defined(MS_WINDOWS)
20 #ifndef __stdcall
21 #define __stdcall
22 #endif
23 #ifndef __cdecl
24 #define __cdecl
25 #endif
26 #ifndef __fastcall
27 #define __fastcall
28 #endif
29 #endif
30 #ifndef DL_IMPORT
31 #define DL_IMPORT(t) t
32 #endif
33 #ifndef DL_EXPORT
34 #define DL_EXPORT(t) t
35 #endif
36 #define __PYX_COMMA ,
37 #ifndef HAVE_LONG_LONG
38 #if PY_VERSION_HEX >= 0x02070000
39 #define HAVE_LONG_LONG
40 #endif
41 #endif
42 #ifndef PY_LONG_LONG
43 #define PY_LONG_LONG LONG_LONG
44 #endif
45 #ifndef Py_HUGE_VAL
46 #define Py_HUGE_VAL HUGE_VAL
47 #endif
48 #ifdef PYPY_VERSION
49 #define CYTHON_COMPILING_IN_PYPY 1
50 #define CYTHON_COMPILING_IN_PYSTON 0
51 #define CYTHON_COMPILING_IN_CPYTHON 0
52 #undef CYTHON_USE_TYPE_SLOTS
53 #define CYTHON_USE_TYPE_SLOTS 0
54 #undef CYTHON_USE_PYTYPE_LOOKUP
55 #define CYTHON_USE_PYTYPE_LOOKUP 0
56 #if PY_VERSION_HEX < 0x03050000
57 #undef CYTHON_USE_ASYNC_SLOTS
58 #define CYTHON_USE_ASYNC_SLOTS 0
59 #elif !defined(CYTHON_USE_ASYNC_SLOTS)
60 #define CYTHON_USE_ASYNC_SLOTS 1
61 #endif
62 #undef CYTHON_USE_PYLIST_INTERNALS
63 #define CYTHON_USE_PYLIST_INTERNALS 0
64 #undef CYTHON_USE_UNICODE_INTERNALS
65 #define CYTHON_USE_UNICODE_INTERNALS 0
66 #undef CYTHON_USE_UNICODE_WRITER
67 #define CYTHON_USE_UNICODE_WRITER 0
68 #undef CYTHON_USE_PYLONG_INTERNALS
69 #define CYTHON_USE_PYLONG_INTERNALS 0
70 #undef CYTHON_AVOID_BORROWED_REFS
71 #define CYTHON_AVOID_BORROWED_REFS 1
72 #undef CYTHON_ASSUME_SAFE_MACROS
73 #define CYTHON_ASSUME_SAFE_MACROS 0
74 #undef CYTHON_UNPACK_METHODS
75 #define CYTHON_UNPACK_METHODS 0
76 #undef CYTHON_FAST_THREAD_STATE
77 #define CYTHON_FAST_THREAD_STATE 0
78 #undef CYTHON_FAST_PYCALL
79 #define CYTHON_FAST_PYCALL 0
80 #undef CYTHON_PEP489_MULTI_PHASE_INIT
81 #define CYTHON_PEP489_MULTI_PHASE_INIT 0
82 #undef CYTHON_USE_TP_FINALIZE
83 #define CYTHON_USE_TP_FINALIZE 0
84 #undef CYTHON_USE_DICT_VERSIONS
85 #define CYTHON_USE_DICT_VERSIONS 0
86 #undef CYTHON_USE_EXC_INFO_STACK
87 #define CYTHON_USE_EXC_INFO_STACK 0
88 #elif defined(PYSTON_VERSION)
89 #define CYTHON_COMPILING_IN_PYPY 0
90 #define CYTHON_COMPILING_IN_PYSTON 1
91 #define CYTHON_COMPILING_IN_CPYTHON 0
92 #ifndef CYTHON_USE_TYPE_SLOTS
93 #define CYTHON_USE_TYPE_SLOTS 1
94 #endif
95 #undef CYTHON_USE_PYTYPE_LOOKUP
96 #define CYTHON_USE_PYTYPE_LOOKUP 0
97 #undef CYTHON_USE_ASYNC_SLOTS
98 #define CYTHON_USE_ASYNC_SLOTS 0
99 #undef CYTHON_USE_PYLIST_INTERNALS
100 #define CYTHON_USE_PYLIST_INTERNALS 0
101 #ifndef CYTHON_USE_UNICODE_INTERNALS
102 #define CYTHON_USE_UNICODE_INTERNALS 1
103 #endif
104 #undef CYTHON_USE_UNICODE_WRITER
105 #define CYTHON_USE_UNICODE_WRITER 0
106 #undef CYTHON_USE_PYLONG_INTERNALS
107 #define CYTHON_USE_PYLONG_INTERNALS 0
108 #ifndef CYTHON_AVOID_BORROWED_REFS
109 #define CYTHON_AVOID_BORROWED_REFS 0
110 #endif
111 #ifndef CYTHON_ASSUME_SAFE_MACROS
112 #define CYTHON_ASSUME_SAFE_MACROS 1
113 #endif
114 #ifndef CYTHON_UNPACK_METHODS
115 #define CYTHON_UNPACK_METHODS 1
116 #endif
117 #undef CYTHON_FAST_THREAD_STATE
118 #define CYTHON_FAST_THREAD_STATE 0
119 #undef CYTHON_FAST_PYCALL
120 #define CYTHON_FAST_PYCALL 0
121 #undef CYTHON_PEP489_MULTI_PHASE_INIT
122 #define CYTHON_PEP489_MULTI_PHASE_INIT 0
123 #undef CYTHON_USE_TP_FINALIZE
124 #define CYTHON_USE_TP_FINALIZE 0
125 #undef CYTHON_USE_DICT_VERSIONS
126 #define CYTHON_USE_DICT_VERSIONS 0
127 #undef CYTHON_USE_EXC_INFO_STACK
128 #define CYTHON_USE_EXC_INFO_STACK 0
129 #else
130 #define CYTHON_COMPILING_IN_PYPY 0
131 #define CYTHON_COMPILING_IN_PYSTON 0
132 #define CYTHON_COMPILING_IN_CPYTHON 1
133 #ifndef CYTHON_USE_TYPE_SLOTS
134 #define CYTHON_USE_TYPE_SLOTS 1
135 #endif
136 #if PY_VERSION_HEX < 0x02070000
137 #undef CYTHON_USE_PYTYPE_LOOKUP
138 #define CYTHON_USE_PYTYPE_LOOKUP 0
139 #elif !defined(CYTHON_USE_PYTYPE_LOOKUP)
140 #define CYTHON_USE_PYTYPE_LOOKUP 1
141 #endif
142 #if PY_MAJOR_VERSION < 3
143 #undef CYTHON_USE_ASYNC_SLOTS
144 #define CYTHON_USE_ASYNC_SLOTS 0
145 #elif !defined(CYTHON_USE_ASYNC_SLOTS)
146 #define CYTHON_USE_ASYNC_SLOTS 1
147 #endif
148 #if PY_VERSION_HEX < 0x02070000
149 #undef CYTHON_USE_PYLONG_INTERNALS
150 #define CYTHON_USE_PYLONG_INTERNALS 0
151 #elif !defined(CYTHON_USE_PYLONG_INTERNALS)
152 #define CYTHON_USE_PYLONG_INTERNALS 1
153 #endif
154 #ifndef CYTHON_USE_PYLIST_INTERNALS
155 #define CYTHON_USE_PYLIST_INTERNALS 1
156 #endif
157 #ifndef CYTHON_USE_UNICODE_INTERNALS
158 #define CYTHON_USE_UNICODE_INTERNALS 1
159 #endif
160 #if PY_VERSION_HEX < 0x030300F0 || PY_VERSION_HEX >= 0x030B00A2
161 #undef CYTHON_USE_UNICODE_WRITER
162 #define CYTHON_USE_UNICODE_WRITER 0
163 #elif !defined(CYTHON_USE_UNICODE_WRITER)
164 #define CYTHON_USE_UNICODE_WRITER 1
165 #endif
166 #ifndef CYTHON_AVOID_BORROWED_REFS
167 #define CYTHON_AVOID_BORROWED_REFS 0
168 #endif
169 #ifndef CYTHON_ASSUME_SAFE_MACROS
170 #define CYTHON_ASSUME_SAFE_MACROS 1
171 #endif
172 #ifndef CYTHON_UNPACK_METHODS
173 #define CYTHON_UNPACK_METHODS 1
174 #endif
175 #ifndef CYTHON_FAST_THREAD_STATE
176 #define CYTHON_FAST_THREAD_STATE 1
177 #endif
178 #ifndef CYTHON_FAST_PYCALL
179 #define CYTHON_FAST_PYCALL (PY_VERSION_HEX < 0x030B00A1)
180 #endif
181 #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
182 #define CYTHON_PEP489_MULTI_PHASE_INIT (PY_VERSION_HEX >= 0x03050000)
183 #endif
184 #ifndef CYTHON_USE_TP_FINALIZE
185 #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1)
186 #endif
187 #ifndef CYTHON_USE_DICT_VERSIONS
188 #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX >= 0x030600B1)
189 #endif
190 #ifndef CYTHON_USE_EXC_INFO_STACK
191 #define CYTHON_USE_EXC_INFO_STACK (PY_VERSION_HEX >= 0x030700A3)
192 #endif
193 #endif
194 #if !defined(CYTHON_FAST_PYCCALL)
195 #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
196 #endif
197 #if CYTHON_USE_PYLONG_INTERNALS
198 #if PY_MAJOR_VERSION < 3
199 #include "longintrepr.h"
200 #endif
201 #undef SHIFT
202 #undef BASE
203 #undef MASK
204 #ifdef SIZEOF_VOID_P
205 enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) };
206 #endif
207 #endif
208 #ifndef __has_attribute
209 #define __has_attribute(x) 0
210 #endif
211 #ifndef __has_cpp_attribute
212 #define __has_cpp_attribute(x) 0
213 #endif
214 #ifndef CYTHON_RESTRICT
215 #if defined(__GNUC__)
216 #define CYTHON_RESTRICT __restrict__
217 #elif defined(_MSC_VER) && _MSC_VER >= 1400
218 #define CYTHON_RESTRICT __restrict
219 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
220 #define CYTHON_RESTRICT restrict
221 #else
222 #define CYTHON_RESTRICT
223 #endif
224 #endif
225 #ifndef CYTHON_UNUSED
226 # if defined(__GNUC__)
227 # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
228 # define CYTHON_UNUSED __attribute__ ((__unused__))
229 # else
230 # define CYTHON_UNUSED
231 # endif
232 # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
233 # define CYTHON_UNUSED __attribute__ ((__unused__))
234 # else
235 # define CYTHON_UNUSED
236 # endif
237 #endif
238 #ifndef CYTHON_MAYBE_UNUSED_VAR
239 # if defined(__cplusplus)
CYTHON_MAYBE_UNUSED_VAR(const T &)240 template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { }
241 # else
242 # define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x)
243 # endif
244 #endif
245 #ifndef CYTHON_NCP_UNUSED
246 # if CYTHON_COMPILING_IN_CPYTHON
247 # define CYTHON_NCP_UNUSED
248 # else
249 # define CYTHON_NCP_UNUSED CYTHON_UNUSED
250 # endif
251 #endif
252 #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
253 #ifdef _MSC_VER
254 #ifndef _MSC_STDINT_H_
255 #if _MSC_VER < 1300
256 typedef unsigned char uint8_t;
257 typedef unsigned int uint32_t;
258 #else
259 typedef unsigned __int8 uint8_t;
260 typedef unsigned __int32 uint32_t;
261 #endif
262 #endif
263 #else
264 #include <stdint.h>
265 #endif
266 #ifndef CYTHON_FALLTHROUGH
267 #if defined(__cplusplus) && __cplusplus >= 201103L
268 #if __has_cpp_attribute(fallthrough)
269 #define CYTHON_FALLTHROUGH [[fallthrough]]
270 #elif __has_cpp_attribute(clang::fallthrough)
271 #define CYTHON_FALLTHROUGH [[clang::fallthrough]]
272 #elif __has_cpp_attribute(gnu::fallthrough)
273 #define CYTHON_FALLTHROUGH [[gnu::fallthrough]]
274 #endif
275 #endif
276 #ifndef CYTHON_FALLTHROUGH
277 #if __has_attribute(fallthrough)
278 #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
279 #else
280 #define CYTHON_FALLTHROUGH
281 #endif
282 #endif
283 #if defined(__clang__ ) && defined(__apple_build_version__)
284 #if __apple_build_version__ < 7000000
285 #undef CYTHON_FALLTHROUGH
286 #define CYTHON_FALLTHROUGH
287 #endif
288 #endif
289 #endif
290
291 #ifndef CYTHON_INLINE
292 #if defined(__clang__)
293 #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
294 #elif defined(__GNUC__)
295 #define CYTHON_INLINE __inline__
296 #elif defined(_MSC_VER)
297 #define CYTHON_INLINE __inline
298 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
299 #define CYTHON_INLINE inline
300 #else
301 #define CYTHON_INLINE
302 #endif
303 #endif
304
305 #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
306 #define Py_OptimizeFlag 0
307 #endif
308 #define __PYX_BUILD_PY_SSIZE_T "n"
309 #define CYTHON_FORMAT_SSIZE_T "z"
310 #if PY_MAJOR_VERSION < 3
311 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
312 #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
313 PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
314 #define __Pyx_DefaultClassType PyClass_Type
315 #else
316 #define __Pyx_BUILTIN_MODULE_NAME "builtins"
317 #define __Pyx_DefaultClassType PyType_Type
318 #if PY_VERSION_HEX >= 0x030B00A1
__Pyx_PyCode_New(int a,int k,int l,int s,int f,PyObject * code,PyObject * c,PyObject * n,PyObject * v,PyObject * fv,PyObject * cell,PyObject * fn,PyObject * name,int fline,PyObject * lnos)319 static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int k, int l, int s, int f,
320 PyObject *code, PyObject *c, PyObject* n, PyObject *v,
321 PyObject *fv, PyObject *cell, PyObject* fn,
322 PyObject *name, int fline, PyObject *lnos) {
323 PyObject *kwds=NULL, *argcount=NULL, *posonlyargcount=NULL, *kwonlyargcount=NULL;
324 PyObject *nlocals=NULL, *stacksize=NULL, *flags=NULL, *replace=NULL, *call_result=NULL, *empty=NULL;
325 const char *fn_cstr=NULL;
326 const char *name_cstr=NULL;
327 PyCodeObject* co=NULL;
328 PyObject *type, *value, *traceback;
329 PyErr_Fetch(&type, &value, &traceback);
330 if (!(kwds=PyDict_New())) goto end;
331 if (!(argcount=PyLong_FromLong(a))) goto end;
332 if (PyDict_SetItemString(kwds, "co_argcount", argcount) != 0) goto end;
333 if (!(posonlyargcount=PyLong_FromLong(0))) goto end;
334 if (PyDict_SetItemString(kwds, "co_posonlyargcount", posonlyargcount) != 0) goto end;
335 if (!(kwonlyargcount=PyLong_FromLong(k))) goto end;
336 if (PyDict_SetItemString(kwds, "co_kwonlyargcount", kwonlyargcount) != 0) goto end;
337 if (!(nlocals=PyLong_FromLong(l))) goto end;
338 if (PyDict_SetItemString(kwds, "co_nlocals", nlocals) != 0) goto end;
339 if (!(stacksize=PyLong_FromLong(s))) goto end;
340 if (PyDict_SetItemString(kwds, "co_stacksize", stacksize) != 0) goto end;
341 if (!(flags=PyLong_FromLong(f))) goto end;
342 if (PyDict_SetItemString(kwds, "co_flags", flags) != 0) goto end;
343 if (PyDict_SetItemString(kwds, "co_code", code) != 0) goto end;
344 if (PyDict_SetItemString(kwds, "co_consts", c) != 0) goto end;
345 if (PyDict_SetItemString(kwds, "co_names", n) != 0) goto end;
346 if (PyDict_SetItemString(kwds, "co_varnames", v) != 0) goto end;
347 if (PyDict_SetItemString(kwds, "co_freevars", fv) != 0) goto end;
348 if (PyDict_SetItemString(kwds, "co_cellvars", cell) != 0) goto end;
349 if (PyDict_SetItemString(kwds, "co_linetable", lnos) != 0) goto end;
350 if (!(fn_cstr=PyUnicode_AsUTF8AndSize(fn, NULL))) goto end;
351 if (!(name_cstr=PyUnicode_AsUTF8AndSize(name, NULL))) goto end;
352 if (!(co = PyCode_NewEmpty(fn_cstr, name_cstr, fline))) goto end;
353 if (!(replace = PyObject_GetAttrString((PyObject*)co, "replace"))) goto cleanup_code_too;
354 if (!(empty = PyTuple_New(0))) goto cleanup_code_too; // unfortunately __pyx_empty_tuple isn't available here
355 if (!(call_result = PyObject_Call(replace, empty, kwds))) goto cleanup_code_too;
356 Py_XDECREF((PyObject*)co);
357 co = (PyCodeObject*)call_result;
358 call_result = NULL;
359 if (0) {
360 cleanup_code_too:
361 Py_XDECREF((PyObject*)co);
362 co = NULL;
363 }
364 end:
365 Py_XDECREF(kwds);
366 Py_XDECREF(argcount);
367 Py_XDECREF(posonlyargcount);
368 Py_XDECREF(kwonlyargcount);
369 Py_XDECREF(nlocals);
370 Py_XDECREF(stacksize);
371 Py_XDECREF(replace);
372 Py_XDECREF(call_result);
373 Py_XDECREF(empty);
374 if (type) {
375 PyErr_Restore(type, value, traceback);
376 }
377 return co;
378 }
379 #else
380 #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
381 PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
382 #endif
383 #define __Pyx_DefaultClassType PyType_Type
384 #endif
385 #ifndef Py_TPFLAGS_CHECKTYPES
386 #define Py_TPFLAGS_CHECKTYPES 0
387 #endif
388 #ifndef Py_TPFLAGS_HAVE_INDEX
389 #define Py_TPFLAGS_HAVE_INDEX 0
390 #endif
391 #ifndef Py_TPFLAGS_HAVE_NEWBUFFER
392 #define Py_TPFLAGS_HAVE_NEWBUFFER 0
393 #endif
394 #ifndef Py_TPFLAGS_HAVE_FINALIZE
395 #define Py_TPFLAGS_HAVE_FINALIZE 0
396 #endif
397 #ifndef METH_STACKLESS
398 #define METH_STACKLESS 0
399 #endif
400 #if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL)
401 #ifndef METH_FASTCALL
402 #define METH_FASTCALL 0x80
403 #endif
404 typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs);
405 typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args,
406 Py_ssize_t nargs, PyObject *kwnames);
407 #else
408 #define __Pyx_PyCFunctionFast _PyCFunctionFast
409 #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
410 #endif
411 #if CYTHON_FAST_PYCCALL
412 #define __Pyx_PyFastCFunction_Check(func)\
413 ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)))))
414 #else
415 #define __Pyx_PyFastCFunction_Check(func) 0
416 #endif
417 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
418 #define PyObject_Malloc(s) PyMem_Malloc(s)
419 #define PyObject_Free(p) PyMem_Free(p)
420 #define PyObject_Realloc(p) PyMem_Realloc(p)
421 #endif
422 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030400A1
423 #define PyMem_RawMalloc(n) PyMem_Malloc(n)
424 #define PyMem_RawRealloc(p, n) PyMem_Realloc(p, n)
425 #define PyMem_RawFree(p) PyMem_Free(p)
426 #endif
427 #if CYTHON_COMPILING_IN_PYSTON
428 #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co)
429 #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
430 #else
431 #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0)
432 #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno)
433 #endif
434 #if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000
435 #define __Pyx_PyThreadState_Current PyThreadState_GET()
436 #elif PY_VERSION_HEX >= 0x03060000
437 #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
438 #elif PY_VERSION_HEX >= 0x03000000
439 #define __Pyx_PyThreadState_Current PyThreadState_GET()
440 #else
441 #define __Pyx_PyThreadState_Current _PyThreadState_Current
442 #endif
443 #if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT)
444 #include "pythread.h"
445 #define Py_tss_NEEDS_INIT 0
446 typedef int Py_tss_t;
PyThread_tss_create(Py_tss_t * key)447 static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) {
448 *key = PyThread_create_key();
449 return 0;
450 }
PyThread_tss_alloc(void)451 static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) {
452 Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t));
453 *key = Py_tss_NEEDS_INIT;
454 return key;
455 }
PyThread_tss_free(Py_tss_t * key)456 static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) {
457 PyObject_Free(key);
458 }
PyThread_tss_is_created(Py_tss_t * key)459 static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) {
460 return *key != Py_tss_NEEDS_INIT;
461 }
PyThread_tss_delete(Py_tss_t * key)462 static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) {
463 PyThread_delete_key(*key);
464 *key = Py_tss_NEEDS_INIT;
465 }
PyThread_tss_set(Py_tss_t * key,void * value)466 static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) {
467 return PyThread_set_key_value(*key, value);
468 }
PyThread_tss_get(Py_tss_t * key)469 static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
470 return PyThread_get_key_value(*key);
471 }
472 #endif
473 #if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized)
474 #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
475 #else
476 #define __Pyx_PyDict_NewPresized(n) PyDict_New()
477 #endif
478 #if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION
479 #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
480 #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
481 #else
482 #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
483 #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
484 #endif
485 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS
486 #define __Pyx_PyDict_GetItemStr(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
487 #else
488 #define __Pyx_PyDict_GetItemStr(dict, name) PyDict_GetItem(dict, name)
489 #endif
490 #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
491 #define CYTHON_PEP393_ENABLED 1
492 #if defined(PyUnicode_IS_READY)
493 #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\
494 0 : _PyUnicode_Ready((PyObject *)(op)))
495 #else
496 #define __Pyx_PyUnicode_READY(op) (0)
497 #endif
498 #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
499 #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
500 #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u)
501 #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u)
502 #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u)
503 #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i)
504 #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch)
505 #if defined(PyUnicode_IS_READY) && defined(PyUnicode_GET_SIZE)
506 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000
507 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length))
508 #else
509 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
510 #endif
511 #else
512 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_LENGTH(u))
513 #endif
514 #else
515 #define CYTHON_PEP393_ENABLED 0
516 #define PyUnicode_1BYTE_KIND 1
517 #define PyUnicode_2BYTE_KIND 2
518 #define PyUnicode_4BYTE_KIND 4
519 #define __Pyx_PyUnicode_READY(op) (0)
520 #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
521 #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
522 #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
523 #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE))
524 #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u))
525 #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
526 #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
527 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u))
528 #endif
529 #if CYTHON_COMPILING_IN_PYPY
530 #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b)
531 #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b)
532 #else
533 #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b)
534 #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
535 PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
536 #endif
537 #if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
538 #define PyUnicode_Contains(u, s) PySequence_Contains(u, s)
539 #endif
540 #if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
541 #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type)
542 #endif
543 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
544 #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt)
545 #endif
546 #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
547 #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
548 #if PY_MAJOR_VERSION >= 3
549 #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b)
550 #else
551 #define __Pyx_PyString_Format(a, b) PyString_Format(a, b)
552 #endif
553 #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
554 #define PyObject_ASCII(o) PyObject_Repr(o)
555 #endif
556 #if PY_MAJOR_VERSION >= 3
557 #define PyBaseString_Type PyUnicode_Type
558 #define PyStringObject PyUnicodeObject
559 #define PyString_Type PyUnicode_Type
560 #define PyString_Check PyUnicode_Check
561 #define PyString_CheckExact PyUnicode_CheckExact
562 #ifndef PyObject_Unicode
563 #define PyObject_Unicode PyObject_Str
564 #endif
565 #endif
566 #if PY_MAJOR_VERSION >= 3
567 #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
568 #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
569 #else
570 #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
571 #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
572 #endif
573 #ifndef PySet_CheckExact
574 #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
575 #endif
576 #if PY_VERSION_HEX >= 0x030900A4
577 #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt)
578 #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size)
579 #else
580 #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt)
581 #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size)
582 #endif
583 #if CYTHON_ASSUME_SAFE_MACROS
584 #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq)
585 #else
586 #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq)
587 #endif
588 #if PY_MAJOR_VERSION >= 3
589 #define PyIntObject PyLongObject
590 #define PyInt_Type PyLong_Type
591 #define PyInt_Check(op) PyLong_Check(op)
592 #define PyInt_CheckExact(op) PyLong_CheckExact(op)
593 #define PyInt_FromString PyLong_FromString
594 #define PyInt_FromUnicode PyLong_FromUnicode
595 #define PyInt_FromLong PyLong_FromLong
596 #define PyInt_FromSize_t PyLong_FromSize_t
597 #define PyInt_FromSsize_t PyLong_FromSsize_t
598 #define PyInt_AsLong PyLong_AsLong
599 #define PyInt_AS_LONG PyLong_AS_LONG
600 #define PyInt_AsSsize_t PyLong_AsSsize_t
601 #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask
602 #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
603 #define PyNumber_Int PyNumber_Long
604 #endif
605 #if PY_MAJOR_VERSION >= 3
606 #define PyBoolObject PyLongObject
607 #endif
608 #if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
609 #ifndef PyUnicode_InternFromString
610 #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
611 #endif
612 #endif
613 #if PY_VERSION_HEX < 0x030200A4
614 typedef long Py_hash_t;
615 #define __Pyx_PyInt_FromHash_t PyInt_FromLong
616 #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsHash_t
617 #else
618 #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
619 #define __Pyx_PyInt_AsHash_t __Pyx_PyIndex_AsSsize_t
620 #endif
621 #if PY_MAJOR_VERSION >= 3
622 #define __Pyx_PyMethod_New(func, self, klass) ((self) ? ((void)(klass), PyMethod_New(func, self)) : __Pyx_NewRef(func))
623 #else
624 #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
625 #endif
626 #if CYTHON_USE_ASYNC_SLOTS
627 #if PY_VERSION_HEX >= 0x030500B1
628 #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
629 #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
630 #else
631 #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
632 #endif
633 #else
634 #define __Pyx_PyType_AsAsync(obj) NULL
635 #endif
636 #ifndef __Pyx_PyAsyncMethodsStruct
637 typedef struct {
638 unaryfunc am_await;
639 unaryfunc am_aiter;
640 unaryfunc am_anext;
641 } __Pyx_PyAsyncMethodsStruct;
642 #endif
643
644 #if defined(WIN32) || defined(MS_WINDOWS)
645 #define _USE_MATH_DEFINES
646 #endif
647 #include <math.h>
648 #ifdef NAN
649 #define __PYX_NAN() ((float) NAN)
650 #else
__PYX_NAN()651 static CYTHON_INLINE float __PYX_NAN() {
652 float value;
653 memset(&value, 0xFF, sizeof(value));
654 return value;
655 }
656 #endif
657 #if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
658 #define __Pyx_truncl trunc
659 #else
660 #define __Pyx_truncl truncl
661 #endif
662
663 #define __PYX_MARK_ERR_POS(f_index, lineno) \
664 { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; }
665 #define __PYX_ERR(f_index, lineno, Ln_error) \
666 { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; }
667
668 #ifndef __PYX_EXTERN_C
669 #ifdef __cplusplus
670 #define __PYX_EXTERN_C extern "C"
671 #else
672 #define __PYX_EXTERN_C extern
673 #endif
674 #endif
675
676 #define __PYX_HAVE__bx__bbi__bbi_file
677 #define __PYX_HAVE_API__bx__bbi__bbi_file
678 /* Early includes */
679 #include <string.h>
680 #include <stdio.h>
681 #include "numpy/arrayobject.h"
682 #include "numpy/ndarrayobject.h"
683 #include "numpy/ndarraytypes.h"
684 #include "numpy/arrayscalars.h"
685 #include "numpy/ufuncobject.h"
686
687 /* NumPy API declarations from "numpy/__init__.pxd" */
688
689 #include <limits.h>
690 #ifdef _OPENMP
691 #include <omp.h>
692 #endif /* _OPENMP */
693
694 #if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS)
695 #define CYTHON_WITHOUT_ASSERTIONS
696 #endif
697
698 typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
699 const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;
700
701 #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
702 #define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0
703 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8)
704 #define __PYX_DEFAULT_STRING_ENCODING ""
705 #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
706 #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
707 #define __Pyx_uchar_cast(c) ((unsigned char)c)
708 #define __Pyx_long_cast(x) ((long)x)
709 #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\
710 (sizeof(type) < sizeof(Py_ssize_t)) ||\
711 (sizeof(type) > sizeof(Py_ssize_t) &&\
712 likely(v < (type)PY_SSIZE_T_MAX ||\
713 v == (type)PY_SSIZE_T_MAX) &&\
714 (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
715 v == (type)PY_SSIZE_T_MIN))) ||\
716 (sizeof(type) == sizeof(Py_ssize_t) &&\
717 (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
718 v == (type)PY_SSIZE_T_MAX))) )
__Pyx_is_valid_index(Py_ssize_t i,Py_ssize_t limit)719 static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) {
720 return (size_t) i < (size_t) limit;
721 }
722 #if defined (__cplusplus) && __cplusplus >= 201103L
723 #include <cstdlib>
724 #define __Pyx_sst_abs(value) std::abs(value)
725 #elif SIZEOF_INT >= SIZEOF_SIZE_T
726 #define __Pyx_sst_abs(value) abs(value)
727 #elif SIZEOF_LONG >= SIZEOF_SIZE_T
728 #define __Pyx_sst_abs(value) labs(value)
729 #elif defined (_MSC_VER)
730 #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value))
731 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
732 #define __Pyx_sst_abs(value) llabs(value)
733 #elif defined (__GNUC__)
734 #define __Pyx_sst_abs(value) __builtin_llabs(value)
735 #else
736 #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
737 #endif
738 static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
739 static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
740 #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
741 #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
742 #define __Pyx_PyBytes_FromString PyBytes_FromString
743 #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
744 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
745 #if PY_MAJOR_VERSION < 3
746 #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString
747 #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
748 #else
749 #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString
750 #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
751 #endif
752 #define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s))
753 #define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s))
754 #define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s))
755 #define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s))
756 #define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s))
757 #define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s))
758 #define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s))
759 #define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s))
760 #define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s))
761 #define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s))
762 #define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s))
763 #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s)
764 #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s)
765 #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s)
766 #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s)
767 #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
__Pyx_Py_UNICODE_strlen(const Py_UNICODE * u)768 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) {
769 const Py_UNICODE *u_end = u;
770 while (*u_end++) ;
771 return (size_t)(u_end - u - 1);
772 }
773 #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
774 #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
775 #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
776 #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
777 #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
778 static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b);
779 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
780 static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*);
781 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
782 #define __Pyx_PySequence_Tuple(obj)\
783 (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj))
784 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
785 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
786 static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*);
787 #if CYTHON_ASSUME_SAFE_MACROS
788 #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
789 #else
790 #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
791 #endif
792 #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
793 #if PY_MAJOR_VERSION >= 3
794 #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
795 #else
796 #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
797 #endif
798 #define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
799 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
800 static int __Pyx_sys_getdefaultencoding_not_ascii;
__Pyx_init_sys_getdefaultencoding_params(void)801 static int __Pyx_init_sys_getdefaultencoding_params(void) {
802 PyObject* sys;
803 PyObject* default_encoding = NULL;
804 PyObject* ascii_chars_u = NULL;
805 PyObject* ascii_chars_b = NULL;
806 const char* default_encoding_c;
807 sys = PyImport_ImportModule("sys");
808 if (!sys) goto bad;
809 default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
810 Py_DECREF(sys);
811 if (!default_encoding) goto bad;
812 default_encoding_c = PyBytes_AsString(default_encoding);
813 if (!default_encoding_c) goto bad;
814 if (strcmp(default_encoding_c, "ascii") == 0) {
815 __Pyx_sys_getdefaultencoding_not_ascii = 0;
816 } else {
817 char ascii_chars[128];
818 int c;
819 for (c = 0; c < 128; c++) {
820 ascii_chars[c] = c;
821 }
822 __Pyx_sys_getdefaultencoding_not_ascii = 1;
823 ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
824 if (!ascii_chars_u) goto bad;
825 ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
826 if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
827 PyErr_Format(
828 PyExc_ValueError,
829 "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
830 default_encoding_c);
831 goto bad;
832 }
833 Py_DECREF(ascii_chars_u);
834 Py_DECREF(ascii_chars_b);
835 }
836 Py_DECREF(default_encoding);
837 return 0;
838 bad:
839 Py_XDECREF(default_encoding);
840 Py_XDECREF(ascii_chars_u);
841 Py_XDECREF(ascii_chars_b);
842 return -1;
843 }
844 #endif
845 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
846 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
847 #else
848 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
849 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
850 static char* __PYX_DEFAULT_STRING_ENCODING;
__Pyx_init_sys_getdefaultencoding_params(void)851 static int __Pyx_init_sys_getdefaultencoding_params(void) {
852 PyObject* sys;
853 PyObject* default_encoding = NULL;
854 char* default_encoding_c;
855 sys = PyImport_ImportModule("sys");
856 if (!sys) goto bad;
857 default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
858 Py_DECREF(sys);
859 if (!default_encoding) goto bad;
860 default_encoding_c = PyBytes_AsString(default_encoding);
861 if (!default_encoding_c) goto bad;
862 __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1);
863 if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
864 strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
865 Py_DECREF(default_encoding);
866 return 0;
867 bad:
868 Py_XDECREF(default_encoding);
869 return -1;
870 }
871 #endif
872 #endif
873
874
875 /* Test for GCC > 2.95 */
876 #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
877 #define likely(x) __builtin_expect(!!(x), 1)
878 #define unlikely(x) __builtin_expect(!!(x), 0)
879 #else /* !__GNUC__ or GCC < 2.95 */
880 #define likely(x) (x)
881 #define unlikely(x) (x)
882 #endif /* __GNUC__ */
__Pyx_pretend_to_initialize(void * ptr)883 static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; }
884
885 static PyObject *__pyx_m = NULL;
886 static PyObject *__pyx_d;
887 static PyObject *__pyx_b;
888 static PyObject *__pyx_cython_runtime = NULL;
889 static PyObject *__pyx_empty_tuple;
890 static PyObject *__pyx_empty_bytes;
891 static PyObject *__pyx_empty_unicode;
892 static int __pyx_lineno;
893 static int __pyx_clineno = 0;
894 static const char * __pyx_cfilenm= __FILE__;
895 static const char *__pyx_filename;
896
897 /* Header.proto */
898 #if !defined(CYTHON_CCOMPLEX)
899 #if defined(__cplusplus)
900 #define CYTHON_CCOMPLEX 1
901 #elif defined(_Complex_I)
902 #define CYTHON_CCOMPLEX 1
903 #else
904 #define CYTHON_CCOMPLEX 0
905 #endif
906 #endif
907 #if CYTHON_CCOMPLEX
908 #ifdef __cplusplus
909 #include <complex>
910 #else
911 #include <complex.h>
912 #endif
913 #endif
914 #if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
915 #undef _Complex_I
916 #define _Complex_I 1.0fj
917 #endif
918
919
920 static const char *__pyx_f[] = {
921 "lib/bx/bbi/bbi_file.pyx",
922 "lib/bx/bbi/bbi_file.pxd",
923 "stringsource",
924 "__init__.pxd",
925 "lib/bx/bbi/bpt_file.pxd",
926 "lib/bx/bbi/cirtree_file.pxd",
927 "type.pxd",
928 };
929 /* BufferFormatStructs.proto */
930 #define IS_UNSIGNED(type) (((type) -1) > 0)
931 struct __Pyx_StructField_;
932 #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0)
933 typedef struct {
934 const char* name;
935 struct __Pyx_StructField_* fields;
936 size_t size;
937 size_t arraysize[8];
938 int ndim;
939 char typegroup;
940 char is_unsigned;
941 int flags;
942 } __Pyx_TypeInfo;
943 typedef struct __Pyx_StructField_ {
944 __Pyx_TypeInfo* type;
945 const char* name;
946 size_t offset;
947 } __Pyx_StructField;
948 typedef struct {
949 __Pyx_StructField* field;
950 size_t parent_offset;
951 } __Pyx_BufFmt_StackElem;
952 typedef struct {
953 __Pyx_StructField root;
954 __Pyx_BufFmt_StackElem* head;
955 size_t fmt_offset;
956 size_t new_count, enc_count;
957 size_t struct_alignment;
958 int is_complex;
959 char enc_type;
960 char new_packmode;
961 char enc_packmode;
962 char is_valid_array;
963 } __Pyx_BufFmt_Context;
964
965
966 /* "types.pxd":1
967 * ctypedef unsigned char UBYTE # <<<<<<<<<<<<<<
968 * ctypedef signed char BYTE
969 * ctypedef unsigned short UWORD
970 */
971 typedef unsigned char __pyx_t_2bx_3bbi_5types_UBYTE;
972
973 /* "types.pxd":2
974 * ctypedef unsigned char UBYTE
975 * ctypedef signed char BYTE # <<<<<<<<<<<<<<
976 * ctypedef unsigned short UWORD
977 * ctypedef short WORD
978 */
979 typedef signed char __pyx_t_2bx_3bbi_5types_BYTE;
980
981 /* "types.pxd":3
982 * ctypedef unsigned char UBYTE
983 * ctypedef signed char BYTE
984 * ctypedef unsigned short UWORD # <<<<<<<<<<<<<<
985 * ctypedef short WORD
986 * ctypedef unsigned long long bits64
987 */
988 typedef unsigned short __pyx_t_2bx_3bbi_5types_UWORD;
989
990 /* "types.pxd":4
991 * ctypedef signed char BYTE
992 * ctypedef unsigned short UWORD
993 * ctypedef short WORD # <<<<<<<<<<<<<<
994 * ctypedef unsigned long long bits64
995 * ctypedef unsigned bits32
996 */
997 typedef short __pyx_t_2bx_3bbi_5types_WORD;
998
999 /* "types.pxd":5
1000 * ctypedef unsigned short UWORD
1001 * ctypedef short WORD
1002 * ctypedef unsigned long long bits64 # <<<<<<<<<<<<<<
1003 * ctypedef unsigned bits32
1004 * ctypedef unsigned short bits16
1005 */
1006 typedef unsigned PY_LONG_LONG __pyx_t_2bx_3bbi_5types_bits64;
1007
1008 /* "types.pxd":6
1009 * ctypedef short WORD
1010 * ctypedef unsigned long long bits64
1011 * ctypedef unsigned bits32 # <<<<<<<<<<<<<<
1012 * ctypedef unsigned short bits16
1013 * ctypedef unsigned char bits8
1014 */
1015 typedef unsigned int __pyx_t_2bx_3bbi_5types_bits32;
1016
1017 /* "types.pxd":7
1018 * ctypedef unsigned long long bits64
1019 * ctypedef unsigned bits32
1020 * ctypedef unsigned short bits16 # <<<<<<<<<<<<<<
1021 * ctypedef unsigned char bits8
1022 * ctypedef int signed32
1023 */
1024 typedef unsigned short __pyx_t_2bx_3bbi_5types_bits16;
1025
1026 /* "types.pxd":8
1027 * ctypedef unsigned bits32
1028 * ctypedef unsigned short bits16
1029 * ctypedef unsigned char bits8 # <<<<<<<<<<<<<<
1030 * ctypedef int signed32
1031 *
1032 */
1033 typedef unsigned char __pyx_t_2bx_3bbi_5types_bits8;
1034
1035 /* "types.pxd":9
1036 * ctypedef unsigned short bits16
1037 * ctypedef unsigned char bits8
1038 * ctypedef int signed32 # <<<<<<<<<<<<<<
1039 *
1040 * ctypedef bint boolean
1041 */
1042 typedef int __pyx_t_2bx_3bbi_5types_signed32;
1043
1044 /* "types.pxd":11
1045 * ctypedef int signed32
1046 *
1047 * ctypedef bint boolean # <<<<<<<<<<<<<<
1048 *
1049 */
1050 typedef int __pyx_t_2bx_3bbi_5types_boolean;
1051
1052 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":690
1053 * # in Cython to enable them only on the right systems.
1054 *
1055 * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
1056 * ctypedef npy_int16 int16_t
1057 * ctypedef npy_int32 int32_t
1058 */
1059 typedef npy_int8 __pyx_t_5numpy_int8_t;
1060
1061 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":691
1062 *
1063 * ctypedef npy_int8 int8_t
1064 * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
1065 * ctypedef npy_int32 int32_t
1066 * ctypedef npy_int64 int64_t
1067 */
1068 typedef npy_int16 __pyx_t_5numpy_int16_t;
1069
1070 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":692
1071 * ctypedef npy_int8 int8_t
1072 * ctypedef npy_int16 int16_t
1073 * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
1074 * ctypedef npy_int64 int64_t
1075 * #ctypedef npy_int96 int96_t
1076 */
1077 typedef npy_int32 __pyx_t_5numpy_int32_t;
1078
1079 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":693
1080 * ctypedef npy_int16 int16_t
1081 * ctypedef npy_int32 int32_t
1082 * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
1083 * #ctypedef npy_int96 int96_t
1084 * #ctypedef npy_int128 int128_t
1085 */
1086 typedef npy_int64 __pyx_t_5numpy_int64_t;
1087
1088 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":697
1089 * #ctypedef npy_int128 int128_t
1090 *
1091 * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
1092 * ctypedef npy_uint16 uint16_t
1093 * ctypedef npy_uint32 uint32_t
1094 */
1095 typedef npy_uint8 __pyx_t_5numpy_uint8_t;
1096
1097 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":698
1098 *
1099 * ctypedef npy_uint8 uint8_t
1100 * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
1101 * ctypedef npy_uint32 uint32_t
1102 * ctypedef npy_uint64 uint64_t
1103 */
1104 typedef npy_uint16 __pyx_t_5numpy_uint16_t;
1105
1106 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":699
1107 * ctypedef npy_uint8 uint8_t
1108 * ctypedef npy_uint16 uint16_t
1109 * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
1110 * ctypedef npy_uint64 uint64_t
1111 * #ctypedef npy_uint96 uint96_t
1112 */
1113 typedef npy_uint32 __pyx_t_5numpy_uint32_t;
1114
1115 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":700
1116 * ctypedef npy_uint16 uint16_t
1117 * ctypedef npy_uint32 uint32_t
1118 * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
1119 * #ctypedef npy_uint96 uint96_t
1120 * #ctypedef npy_uint128 uint128_t
1121 */
1122 typedef npy_uint64 __pyx_t_5numpy_uint64_t;
1123
1124 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":704
1125 * #ctypedef npy_uint128 uint128_t
1126 *
1127 * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
1128 * ctypedef npy_float64 float64_t
1129 * #ctypedef npy_float80 float80_t
1130 */
1131 typedef npy_float32 __pyx_t_5numpy_float32_t;
1132
1133 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":705
1134 *
1135 * ctypedef npy_float32 float32_t
1136 * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
1137 * #ctypedef npy_float80 float80_t
1138 * #ctypedef npy_float128 float128_t
1139 */
1140 typedef npy_float64 __pyx_t_5numpy_float64_t;
1141
1142 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":714
1143 * # The int types are mapped a bit surprising --
1144 * # numpy.int corresponds to 'l' and numpy.long to 'q'
1145 * ctypedef npy_long int_t # <<<<<<<<<<<<<<
1146 * ctypedef npy_longlong long_t
1147 * ctypedef npy_longlong longlong_t
1148 */
1149 typedef npy_long __pyx_t_5numpy_int_t;
1150
1151 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":715
1152 * # numpy.int corresponds to 'l' and numpy.long to 'q'
1153 * ctypedef npy_long int_t
1154 * ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
1155 * ctypedef npy_longlong longlong_t
1156 *
1157 */
1158 typedef npy_longlong __pyx_t_5numpy_long_t;
1159
1160 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":716
1161 * ctypedef npy_long int_t
1162 * ctypedef npy_longlong long_t
1163 * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
1164 *
1165 * ctypedef npy_ulong uint_t
1166 */
1167 typedef npy_longlong __pyx_t_5numpy_longlong_t;
1168
1169 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":718
1170 * ctypedef npy_longlong longlong_t
1171 *
1172 * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
1173 * ctypedef npy_ulonglong ulong_t
1174 * ctypedef npy_ulonglong ulonglong_t
1175 */
1176 typedef npy_ulong __pyx_t_5numpy_uint_t;
1177
1178 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":719
1179 *
1180 * ctypedef npy_ulong uint_t
1181 * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
1182 * ctypedef npy_ulonglong ulonglong_t
1183 *
1184 */
1185 typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
1186
1187 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":720
1188 * ctypedef npy_ulong uint_t
1189 * ctypedef npy_ulonglong ulong_t
1190 * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
1191 *
1192 * ctypedef npy_intp intp_t
1193 */
1194 typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
1195
1196 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":722
1197 * ctypedef npy_ulonglong ulonglong_t
1198 *
1199 * ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
1200 * ctypedef npy_uintp uintp_t
1201 *
1202 */
1203 typedef npy_intp __pyx_t_5numpy_intp_t;
1204
1205 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":723
1206 *
1207 * ctypedef npy_intp intp_t
1208 * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
1209 *
1210 * ctypedef npy_double float_t
1211 */
1212 typedef npy_uintp __pyx_t_5numpy_uintp_t;
1213
1214 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":725
1215 * ctypedef npy_uintp uintp_t
1216 *
1217 * ctypedef npy_double float_t # <<<<<<<<<<<<<<
1218 * ctypedef npy_double double_t
1219 * ctypedef npy_longdouble longdouble_t
1220 */
1221 typedef npy_double __pyx_t_5numpy_float_t;
1222
1223 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":726
1224 *
1225 * ctypedef npy_double float_t
1226 * ctypedef npy_double double_t # <<<<<<<<<<<<<<
1227 * ctypedef npy_longdouble longdouble_t
1228 *
1229 */
1230 typedef npy_double __pyx_t_5numpy_double_t;
1231
1232 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":727
1233 * ctypedef npy_double float_t
1234 * ctypedef npy_double double_t
1235 * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
1236 *
1237 * ctypedef npy_cfloat cfloat_t
1238 */
1239 typedef npy_longdouble __pyx_t_5numpy_longdouble_t;
1240 /* Declarations.proto */
1241 #if CYTHON_CCOMPLEX
1242 #ifdef __cplusplus
1243 typedef ::std::complex< float > __pyx_t_float_complex;
1244 #else
1245 typedef float _Complex __pyx_t_float_complex;
1246 #endif
1247 #else
1248 typedef struct { float real, imag; } __pyx_t_float_complex;
1249 #endif
1250 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float);
1251
1252 /* Declarations.proto */
1253 #if CYTHON_CCOMPLEX
1254 #ifdef __cplusplus
1255 typedef ::std::complex< double > __pyx_t_double_complex;
1256 #else
1257 typedef double _Complex __pyx_t_double_complex;
1258 #endif
1259 #else
1260 typedef struct { double real, imag; } __pyx_t_double_complex;
1261 #endif
1262 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double);
1263
1264
1265 /*--- Type declarations ---*/
1266 struct __pyx_obj_2bx_3bbi_8bpt_file_BPTFile;
1267 struct __pyx_obj_2bx_3bbi_12cirtree_file_CIRTreeFile;
1268 struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock;
1269 struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData;
1270 struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler;
1271 struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile;
1272 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel;
1273
1274 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":729
1275 * ctypedef npy_longdouble longdouble_t
1276 *
1277 * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
1278 * ctypedef npy_cdouble cdouble_t
1279 * ctypedef npy_clongdouble clongdouble_t
1280 */
1281 typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
1282
1283 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":730
1284 *
1285 * ctypedef npy_cfloat cfloat_t
1286 * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
1287 * ctypedef npy_clongdouble clongdouble_t
1288 *
1289 */
1290 typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
1291
1292 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":731
1293 * ctypedef npy_cfloat cfloat_t
1294 * ctypedef npy_cdouble cdouble_t
1295 * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
1296 *
1297 * ctypedef npy_cdouble complex_t
1298 */
1299 typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
1300
1301 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":733
1302 * ctypedef npy_clongdouble clongdouble_t
1303 *
1304 * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
1305 *
1306 * cdef inline object PyArray_MultiIterNew1(a):
1307 */
1308 typedef npy_cdouble __pyx_t_5numpy_complex_t;
1309
1310 /* "bx/bbi/bbi_file.pyx":49
1311 * cdef inline int imin(int a, int b): return a if a <= b else b
1312 *
1313 * cdef enum summary_type: # <<<<<<<<<<<<<<
1314 * summary_type_mean = 0
1315 * summary_type_max = 1
1316 */
1317 enum __pyx_t_2bx_3bbi_8bbi_file_summary_type {
1318 __pyx_e_2bx_3bbi_8bbi_file_summary_type_mean = 0,
1319 __pyx_e_2bx_3bbi_8bbi_file_summary_type_max = 1,
1320 __pyx_e_2bx_3bbi_8bbi_file_summary_type_min = 2,
1321 __pyx_e_2bx_3bbi_8bbi_file_summary_type_coverage = 3,
1322 __pyx_e_2bx_3bbi_8bbi_file_summary_type_sd = 4
1323 };
1324
1325 /* "bpt_file.pxd":5
1326 * from types cimport *
1327 *
1328 * cdef class BPTFile: # <<<<<<<<<<<<<<
1329 * """
1330 * On disk B+ tree compatible with Jim Kent's bPlusTree.c
1331 */
1332 struct __pyx_obj_2bx_3bbi_8bpt_file_BPTFile {
1333 PyObject_HEAD
1334 PyObject *file;
1335 PyObject *reader;
1336 __pyx_t_2bx_3bbi_5types_boolean is_byteswapped;
1337 __pyx_t_2bx_3bbi_5types_bits32 block_size;
1338 __pyx_t_2bx_3bbi_5types_bits32 key_size;
1339 __pyx_t_2bx_3bbi_5types_bits32 value_size;
1340 __pyx_t_2bx_3bbi_5types_bits64 item_count;
1341 __pyx_t_2bx_3bbi_5types_bits64 root_offset;
1342 };
1343
1344
1345 /* "cirtree_file.pxd":3
1346 * from types cimport *
1347 *
1348 * cdef class CIRTreeFile: # <<<<<<<<<<<<<<
1349 * cdef object file
1350 * cdef object reader
1351 */
1352 struct __pyx_obj_2bx_3bbi_12cirtree_file_CIRTreeFile {
1353 PyObject_HEAD
1354 PyObject *file;
1355 PyObject *reader;
1356 __pyx_t_2bx_3bbi_5types_boolean is_byteswapped;
1357 __pyx_t_2bx_3bbi_5types_bits64 root_offset;
1358 __pyx_t_2bx_3bbi_5types_bits32 block_size;
1359 __pyx_t_2bx_3bbi_5types_bits64 item_count;
1360 __pyx_t_2bx_3bbi_5types_bits32 start_chrom_ix;
1361 __pyx_t_2bx_3bbi_5types_bits32 start_base;
1362 __pyx_t_2bx_3bbi_5types_bits32 end_chrom_ix;
1363 __pyx_t_2bx_3bbi_5types_bits32 end_base;
1364 __pyx_t_2bx_3bbi_5types_bits64 file_size;
1365 __pyx_t_2bx_3bbi_5types_bits32 items_per_slot;
1366 };
1367
1368
1369 /* "bx/bbi/bbi_file.pxd":8
1370 * cimport numpy
1371 *
1372 * cdef class SummaryBlock: # <<<<<<<<<<<<<<
1373 * """
1374 * A block of summary data from disk
1375 */
1376 struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock {
1377 PyObject_HEAD
1378 __pyx_t_2bx_3bbi_5types_bits32 chrom_id;
1379 __pyx_t_2bx_3bbi_5types_bits32 start;
1380 __pyx_t_2bx_3bbi_5types_bits32 end;
1381 __pyx_t_2bx_3bbi_5types_bits32 valid_count;
1382 double min_val;
1383 double max_val;
1384 double sum_data;
1385 double sum_squares;
1386 };
1387
1388
1389 /* "bx/bbi/bbi_file.pxd":21
1390 * cdef public double sum_squares
1391 *
1392 * cdef class SummarizedData: # <<<<<<<<<<<<<<
1393 * """
1394 * The result of using SummaryBlocks read from the file to produce a
1395 */
1396 struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData {
1397 PyObject_HEAD
1398 struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_SummarizedData *__pyx_vtab;
1399 __pyx_t_2bx_3bbi_5types_bits32 start;
1400 __pyx_t_2bx_3bbi_5types_bits32 end;
1401 int size;
1402 PyArrayObject *valid_count;
1403 PyArrayObject *min_val;
1404 PyArrayObject *max_val;
1405 PyArrayObject *sum_data;
1406 PyArrayObject *sum_squares;
1407 };
1408
1409
1410 /* "bx/bbi/bbi_file.pxd":39
1411 * cdef class BBIFile
1412 *
1413 * cdef class BlockHandler: # <<<<<<<<<<<<<<
1414 * """
1415 * Callback for `BBIFile.visit_blocks_in_region`
1416 */
1417 struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler {
1418 PyObject_HEAD
1419 struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BlockHandler *__pyx_vtab;
1420 };
1421
1422
1423 /* "bx/bbi/bbi_file.pxd":37
1424 * cdef accumulate_interval_value( self, bits32 s, bits32 e, float val )
1425 *
1426 * cdef class BBIFile # <<<<<<<<<<<<<<
1427 *
1428 * cdef class BlockHandler:
1429 */
1430 struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile {
1431 PyObject_HEAD
1432 struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile *__pyx_vtab;
1433 PyObject *file;
1434 PyObject *reader;
1435 __pyx_t_2bx_3bbi_5types_bits32 magic;
1436 __pyx_t_2bx_3bbi_5types_boolean is_byteswapped;
1437 struct __pyx_obj_2bx_3bbi_8bpt_file_BPTFile *chrom_bpt;
1438 __pyx_t_2bx_3bbi_5types_bits16 version;
1439 __pyx_t_2bx_3bbi_5types_bits16 zoom_levels;
1440 __pyx_t_2bx_3bbi_5types_bits64 chrom_tree_offset;
1441 __pyx_t_2bx_3bbi_5types_bits64 unzoomed_data_offset;
1442 __pyx_t_2bx_3bbi_5types_bits64 unzoomed_index_offset;
1443 __pyx_t_2bx_3bbi_5types_bits16 field_count;
1444 __pyx_t_2bx_3bbi_5types_bits16 defined_field_count;
1445 __pyx_t_2bx_3bbi_5types_bits64 as_offset;
1446 __pyx_t_2bx_3bbi_5types_bits64 total_summary_offset;
1447 __pyx_t_2bx_3bbi_5types_bits32 uncompress_buf_size;
1448 PyObject *level_list;
1449 };
1450
1451
1452 /* "bx/bbi/bbi_file.pyx":292
1453 * return closest_level
1454 *
1455 * cdef class ZoomLevel: # <<<<<<<<<<<<<<
1456 * cdef BBIFile bbi_file
1457 * cdef public bits32 reduction_level
1458 */
1459 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel {
1460 PyObject_HEAD
1461 struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_vtab;
1462 struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *bbi_file;
1463 __pyx_t_2bx_3bbi_5types_bits32 reduction_level;
1464 __pyx_t_2bx_3bbi_5types_bits32 reserved;
1465 __pyx_t_2bx_3bbi_5types_bits64 data_offset;
1466 __pyx_t_2bx_3bbi_5types_bits64 index_offset;
1467 int item_count;
1468 };
1469
1470
1471
1472 /* "bx/bbi/bbi_file.pyx":62
1473 * pass
1474 *
1475 * cdef class SummarizedData: # <<<<<<<<<<<<<<
1476 * """
1477 * The result of using SummaryBlocks read from the file to produce a
1478 */
1479
1480 struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_SummarizedData {
1481 PyObject *(*accumulate_interval_value)(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, float);
1482 };
1483 static struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_SummarizedData *__pyx_vtabptr_2bx_3bbi_8bbi_file_SummarizedData;
1484
1485
1486 /* "bx/bbi/bbi_file.pyx":116
1487 * pass
1488 *
1489 * cdef class BBIFile: # <<<<<<<<<<<<<<
1490 * """
1491 * A "big binary indexed" file. Stores blocks of raw data and numeric
1492 */
1493
1494 struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile {
1495 PyObject *(*visit_blocks_in_region)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *);
1496 PyObject *(*_get_chrom_id_and_size)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, char *);
1497 PyObject *(*_best_zoom_level)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, int);
1498 PyObject *(*summarize)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, PyObject *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int, int __pyx_skip_dispatch);
1499 PyObject *(*summarize_from_full)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, char *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int, int __pyx_skip_dispatch);
1500 PyObject *(*query)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, PyObject *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int, int __pyx_skip_dispatch);
1501 PyObject *(*_summarize_from_full)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int);
1502 };
1503 static struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile *__pyx_vtabptr_2bx_3bbi_8bbi_file_BBIFile;
1504
1505
1506 /* "bx/bbi/bbi_file.pyx":109
1507 * min_val[j] = val
1508 *
1509 * cdef class BlockHandler: # <<<<<<<<<<<<<<
1510 * """
1511 * Callback for `BBIFile.visit_blocks_in_region`
1512 */
1513
1514 struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BlockHandler {
1515 PyObject *(*handle_block)(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *, PyObject *, struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *);
1516 };
1517 static struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BlockHandler *__pyx_vtabptr_2bx_3bbi_8bbi_file_BlockHandler;
1518
1519
1520 /* "bx/bbi/bbi_file.pyx":292
1521 * return closest_level
1522 *
1523 * cdef class ZoomLevel: # <<<<<<<<<<<<<<
1524 * cdef BBIFile bbi_file
1525 * cdef public bits32 reduction_level
1526 */
1527
1528 struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_ZoomLevel {
1529 PyObject *(*_get_summary_slice)(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, PyObject *);
1530 PyObject *(*_summarize)(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int);
1531 };
1532 static struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_vtabptr_2bx_3bbi_8bbi_file_ZoomLevel;
1533
1534 /* --- Runtime support code (head) --- */
1535 /* Refnanny.proto */
1536 #ifndef CYTHON_REFNANNY
1537 #define CYTHON_REFNANNY 0
1538 #endif
1539 #if CYTHON_REFNANNY
1540 typedef struct {
1541 void (*INCREF)(void*, PyObject*, int);
1542 void (*DECREF)(void*, PyObject*, int);
1543 void (*GOTREF)(void*, PyObject*, int);
1544 void (*GIVEREF)(void*, PyObject*, int);
1545 void* (*SetupContext)(const char*, int, const char*);
1546 void (*FinishContext)(void**);
1547 } __Pyx_RefNannyAPIStruct;
1548 static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL;
1549 static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname);
1550 #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL;
1551 #ifdef WITH_THREAD
1552 #define __Pyx_RefNannySetupContext(name, acquire_gil)\
1553 if (acquire_gil) {\
1554 PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\
1555 __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\
1556 PyGILState_Release(__pyx_gilstate_save);\
1557 } else {\
1558 __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\
1559 }
1560 #else
1561 #define __Pyx_RefNannySetupContext(name, acquire_gil)\
1562 __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__)
1563 #endif
1564 #define __Pyx_RefNannyFinishContext()\
1565 __Pyx_RefNanny->FinishContext(&__pyx_refnanny)
1566 #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1567 #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1568 #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1569 #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1570 #define __Pyx_XINCREF(r) do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0)
1571 #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0)
1572 #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0)
1573 #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0)
1574 #else
1575 #define __Pyx_RefNannyDeclarations
1576 #define __Pyx_RefNannySetupContext(name, acquire_gil)
1577 #define __Pyx_RefNannyFinishContext()
1578 #define __Pyx_INCREF(r) Py_INCREF(r)
1579 #define __Pyx_DECREF(r) Py_DECREF(r)
1580 #define __Pyx_GOTREF(r)
1581 #define __Pyx_GIVEREF(r)
1582 #define __Pyx_XINCREF(r) Py_XINCREF(r)
1583 #define __Pyx_XDECREF(r) Py_XDECREF(r)
1584 #define __Pyx_XGOTREF(r)
1585 #define __Pyx_XGIVEREF(r)
1586 #endif
1587 #define __Pyx_XDECREF_SET(r, v) do {\
1588 PyObject *tmp = (PyObject *) r;\
1589 r = v; __Pyx_XDECREF(tmp);\
1590 } while (0)
1591 #define __Pyx_DECREF_SET(r, v) do {\
1592 PyObject *tmp = (PyObject *) r;\
1593 r = v; __Pyx_DECREF(tmp);\
1594 } while (0)
1595 #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
1596 #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)
1597
1598 /* PyObjectGetAttrStr.proto */
1599 #if CYTHON_USE_TYPE_SLOTS
1600 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name);
1601 #else
1602 #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
1603 #endif
1604
1605 /* GetBuiltinName.proto */
1606 static PyObject *__Pyx_GetBuiltinName(PyObject *name);
1607
1608 /* PyErrExceptionMatches.proto */
1609 #if CYTHON_FAST_THREAD_STATE
1610 #define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
1611 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
1612 #else
1613 #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err)
1614 #endif
1615
1616 /* PyThreadStateGet.proto */
1617 #if CYTHON_FAST_THREAD_STATE
1618 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
1619 #define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current;
1620 #define __Pyx_PyErr_Occurred() __pyx_tstate->curexc_type
1621 #else
1622 #define __Pyx_PyThreadState_declare
1623 #define __Pyx_PyThreadState_assign
1624 #define __Pyx_PyErr_Occurred() PyErr_Occurred()
1625 #endif
1626
1627 /* PyErrFetchRestore.proto */
1628 #if CYTHON_FAST_THREAD_STATE
1629 #define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL)
1630 #define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb)
1631 #define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb)
1632 #define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb)
1633 #define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb)
1634 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1635 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1636 #if CYTHON_COMPILING_IN_CPYTHON
1637 #define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL))
1638 #else
1639 #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
1640 #endif
1641 #else
1642 #define __Pyx_PyErr_Clear() PyErr_Clear()
1643 #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
1644 #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb)
1645 #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb)
1646 #define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb)
1647 #define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb)
1648 #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb)
1649 #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb)
1650 #endif
1651
1652 /* GetAttr.proto */
1653 static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *);
1654
1655 /* GetAttr3.proto */
1656 static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *);
1657
1658 /* PyDictVersioning.proto */
1659 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
1660 #define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1)
1661 #define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag)
1662 #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\
1663 (version_var) = __PYX_GET_DICT_VERSION(dict);\
1664 (cache_var) = (value);
1665 #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\
1666 static PY_UINT64_T __pyx_dict_version = 0;\
1667 static PyObject *__pyx_dict_cached_value = NULL;\
1668 if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\
1669 (VAR) = __pyx_dict_cached_value;\
1670 } else {\
1671 (VAR) = __pyx_dict_cached_value = (LOOKUP);\
1672 __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\
1673 }\
1674 }
1675 static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj);
1676 static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj);
1677 static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version);
1678 #else
1679 #define __PYX_GET_DICT_VERSION(dict) (0)
1680 #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)
1681 #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP);
1682 #endif
1683
1684 /* GetModuleGlobalName.proto */
1685 #if CYTHON_USE_DICT_VERSIONS
1686 #define __Pyx_GetModuleGlobalName(var, name) {\
1687 static PY_UINT64_T __pyx_dict_version = 0;\
1688 static PyObject *__pyx_dict_cached_value = NULL;\
1689 (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\
1690 (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\
1691 __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
1692 }
1693 #define __Pyx_GetModuleGlobalNameUncached(var, name) {\
1694 PY_UINT64_T __pyx_dict_version;\
1695 PyObject *__pyx_dict_cached_value;\
1696 (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
1697 }
1698 static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value);
1699 #else
1700 #define __Pyx_GetModuleGlobalName(var, name) (var) = __Pyx__GetModuleGlobalName(name)
1701 #define __Pyx_GetModuleGlobalNameUncached(var, name) (var) = __Pyx__GetModuleGlobalName(name)
1702 static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name);
1703 #endif
1704
1705 /* RaiseArgTupleInvalid.proto */
1706 static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
1707 Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);
1708
1709 /* RaiseDoubleKeywords.proto */
1710 static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);
1711
1712 /* ParseKeywords.proto */
1713 static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\
1714 PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\
1715 const char* function_name);
1716
1717 /* PyObjectCall.proto */
1718 #if CYTHON_COMPILING_IN_CPYTHON
1719 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
1720 #else
1721 #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
1722 #endif
1723
1724 /* ExtTypeTest.proto */
1725 static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);
1726
1727 /* IsLittleEndian.proto */
1728 static CYTHON_INLINE int __Pyx_Is_Little_Endian(void);
1729
1730 /* BufferFormatCheck.proto */
1731 static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts);
1732 static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
1733 __Pyx_BufFmt_StackElem* stack,
1734 __Pyx_TypeInfo* type);
1735
1736 /* BufferGetAndValidate.proto */
1737 #define __Pyx_GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack)\
1738 ((obj == Py_None || obj == NULL) ?\
1739 (__Pyx_ZeroBuffer(buf), 0) :\
1740 __Pyx__GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack))
1741 static int __Pyx__GetBufferAndValidate(Py_buffer* buf, PyObject* obj,
1742 __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack);
1743 static void __Pyx_ZeroBuffer(Py_buffer* buf);
1744 static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info);
1745 static Py_ssize_t __Pyx_minusones[] = { -1, -1, -1, -1, -1, -1, -1, -1 };
1746 static Py_ssize_t __Pyx_zeros[] = { 0, 0, 0, 0, 0, 0, 0, 0 };
1747
1748 /* BufferIndexError.proto */
1749 static void __Pyx_RaiseBufferIndexError(int axis);
1750
1751 #define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0)
1752 /* PyFunctionFastCall.proto */
1753 #if CYTHON_FAST_PYCALL
1754 #define __Pyx_PyFunction_FastCall(func, args, nargs)\
1755 __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL)
1756 #if 1 || PY_VERSION_HEX < 0x030600B1
1757 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs);
1758 #else
1759 #define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs)
1760 #endif
1761 #define __Pyx_BUILD_ASSERT_EXPR(cond)\
1762 (sizeof(char [1 - 2*!(cond)]) - 1)
1763 #ifndef Py_MEMBER_SIZE
1764 #define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member)
1765 #endif
1766 #if CYTHON_FAST_PYCALL
1767 static size_t __pyx_pyframe_localsplus_offset = 0;
1768 #include "frameobject.h"
1769 #define __Pxy_PyFrame_Initialize_Offsets()\
1770 ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\
1771 (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus)))
1772 #define __Pyx_PyFrame_GetLocalsplus(frame)\
1773 (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset))
1774 #endif // CYTHON_FAST_PYCALL
1775 #endif
1776
1777 /* PyCFunctionFastCall.proto */
1778 #if CYTHON_FAST_PYCCALL
1779 static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs);
1780 #else
1781 #define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL)
1782 #endif
1783
1784 /* PyObjectCallMethO.proto */
1785 #if CYTHON_COMPILING_IN_CPYTHON
1786 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
1787 #endif
1788
1789 /* PyObjectCallNoArg.proto */
1790 #if CYTHON_COMPILING_IN_CPYTHON
1791 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func);
1792 #else
1793 #define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL)
1794 #endif
1795
1796 /* PyObjectCallOneArg.proto */
1797 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);
1798
1799 /* PyObjectCall2Args.proto */
1800 static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2);
1801
1802 /* ListAppend.proto */
1803 #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
__Pyx_PyList_Append(PyObject * list,PyObject * x)1804 static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
1805 PyListObject* L = (PyListObject*) list;
1806 Py_ssize_t len = Py_SIZE(list);
1807 if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) {
1808 Py_INCREF(x);
1809 PyList_SET_ITEM(list, len, x);
1810 __Pyx_SET_SIZE(list, len + 1);
1811 return 0;
1812 }
1813 return PyList_Append(list, x);
1814 }
1815 #else
1816 #define __Pyx_PyList_Append(L,x) PyList_Append(L,x)
1817 #endif
1818
1819 /* PyObjectGetMethod.proto */
1820 static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method);
1821
1822 /* PyObjectCallMethod1.proto */
1823 static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg);
1824
1825 /* append.proto */
1826 static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x);
1827
1828 /* RaiseTooManyValuesToUnpack.proto */
1829 static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
1830
1831 /* RaiseNeedMoreValuesToUnpack.proto */
1832 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
1833
1834 /* IterFinish.proto */
1835 static CYTHON_INLINE int __Pyx_IterFinish(void);
1836
1837 /* UnpackItemEndCheck.proto */
1838 static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected);
1839
1840 /* None.proto */
1841 static CYTHON_INLINE long __Pyx_div_long(long, long);
1842
1843 /* RaiseException.proto */
1844 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);
1845
1846 /* GetItemInt.proto */
1847 #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1848 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1849 __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\
1850 (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\
1851 __Pyx_GetItemInt_Generic(o, to_py_func(i))))
1852 #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1853 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1854 __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1855 (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
1856 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
1857 int wraparound, int boundscheck);
1858 #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1859 (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1860 __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1861 (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
1862 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
1863 int wraparound, int boundscheck);
1864 static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
1865 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
1866 int is_list, int wraparound, int boundscheck);
1867
1868 /* PyIntBinop.proto */
1869 #if !CYTHON_COMPILING_IN_PYPY
1870 static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
1871 #else
1872 #define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace, zerodivision_check)\
1873 (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2))
1874 #endif
1875
1876 /* PyIntCompare.proto */
1877 static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, long inplace);
1878
1879 /* PyIntBinop.proto */
1880 #if !CYTHON_COMPILING_IN_PYPY
1881 static PyObject* __Pyx_PyInt_RemainderObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
1882 #else
1883 #define __Pyx_PyInt_RemainderObjC(op1, op2, intval, inplace, zerodivision_check)\
1884 (inplace ? PyNumber_InPlaceRemainder(op1, op2) : PyNumber_Remainder(op1, op2))
1885 #endif
1886
1887 /* BufferFallbackError.proto */
1888 static void __Pyx_RaiseBufferFallbackError(void);
1889
1890 /* Import.proto */
1891 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);
1892
1893 /* ImportFrom.proto */
1894 static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name);
1895
1896 /* HasAttr.proto */
1897 static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *);
1898
1899 /* GetTopmostException.proto */
1900 #if CYTHON_USE_EXC_INFO_STACK
1901 static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate);
1902 #endif
1903
1904 /* SaveResetException.proto */
1905 #if CYTHON_FAST_THREAD_STATE
1906 #define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
1907 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1908 #define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
1909 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1910 #else
1911 #define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb)
1912 #define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb)
1913 #endif
1914
1915 /* GetException.proto */
1916 #if CYTHON_FAST_THREAD_STATE
1917 #define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb)
1918 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1919 #else
1920 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
1921 #endif
1922
1923 /* PyObject_GenericGetAttrNoDict.proto */
1924 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
1925 static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name);
1926 #else
1927 #define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr
1928 #endif
1929
1930 /* PyObject_GenericGetAttr.proto */
1931 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
1932 static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name);
1933 #else
1934 #define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr
1935 #endif
1936
1937 /* PyObjectGetAttrStrNoError.proto */
1938 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name);
1939
1940 /* SetupReduce.proto */
1941 static int __Pyx_setup_reduce(PyObject* type_obj);
1942
1943 /* SetVTable.proto */
1944 static int __Pyx_SetVtable(PyObject *dict, void *vtable);
1945
1946 /* TypeImport.proto */
1947 #ifndef __PYX_HAVE_RT_ImportType_proto
1948 #define __PYX_HAVE_RT_ImportType_proto
1949 enum __Pyx_ImportType_CheckSize {
1950 __Pyx_ImportType_CheckSize_Error = 0,
1951 __Pyx_ImportType_CheckSize_Warn = 1,
1952 __Pyx_ImportType_CheckSize_Ignore = 2
1953 };
1954 static PyTypeObject *__Pyx_ImportType(PyObject* module, const char *module_name, const char *class_name, size_t size, enum __Pyx_ImportType_CheckSize check_size);
1955 #endif
1956
1957 /* CLineInTraceback.proto */
1958 #ifdef CYTHON_CLINE_IN_TRACEBACK
1959 #define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0)
1960 #else
1961 static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line);
1962 #endif
1963
1964 /* CodeObjectCache.proto */
1965 typedef struct {
1966 PyCodeObject* code_object;
1967 int code_line;
1968 } __Pyx_CodeObjectCacheEntry;
1969 struct __Pyx_CodeObjectCache {
1970 int count;
1971 int max_count;
1972 __Pyx_CodeObjectCacheEntry* entries;
1973 };
1974 static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
1975 static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
1976 static PyCodeObject *__pyx_find_code_object(int code_line);
1977 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);
1978
1979 /* AddTraceback.proto */
1980 static void __Pyx_AddTraceback(const char *funcname, int c_line,
1981 int py_line, const char *filename);
1982
1983 /* GCCDiagnostics.proto */
1984 #if defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6))
1985 #define __Pyx_HAS_GCC_DIAGNOSTIC
1986 #endif
1987
1988 /* BufferStructDeclare.proto */
1989 typedef struct {
1990 Py_ssize_t shape, strides, suboffsets;
1991 } __Pyx_Buf_DimInfo;
1992 typedef struct {
1993 size_t refcount;
1994 Py_buffer pybuffer;
1995 } __Pyx_Buffer;
1996 typedef struct {
1997 __Pyx_Buffer *rcbuffer;
1998 char *data;
1999 __Pyx_Buf_DimInfo diminfo[8];
2000 } __Pyx_LocalBuf_ND;
2001
2002 #if PY_MAJOR_VERSION < 3
2003 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags);
2004 static void __Pyx_ReleaseBuffer(Py_buffer *view);
2005 #else
2006 #define __Pyx_GetBuffer PyObject_GetBuffer
2007 #define __Pyx_ReleaseBuffer PyBuffer_Release
2008 #endif
2009
2010
2011 /* RealImag.proto */
2012 #if CYTHON_CCOMPLEX
2013 #ifdef __cplusplus
2014 #define __Pyx_CREAL(z) ((z).real())
2015 #define __Pyx_CIMAG(z) ((z).imag())
2016 #else
2017 #define __Pyx_CREAL(z) (__real__(z))
2018 #define __Pyx_CIMAG(z) (__imag__(z))
2019 #endif
2020 #else
2021 #define __Pyx_CREAL(z) ((z).real)
2022 #define __Pyx_CIMAG(z) ((z).imag)
2023 #endif
2024 #if defined(__cplusplus) && CYTHON_CCOMPLEX\
2025 && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103)
2026 #define __Pyx_SET_CREAL(z,x) ((z).real(x))
2027 #define __Pyx_SET_CIMAG(z,y) ((z).imag(y))
2028 #else
2029 #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x)
2030 #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y)
2031 #endif
2032
2033 /* Arithmetic.proto */
2034 #if CYTHON_CCOMPLEX
2035 #define __Pyx_c_eq_float(a, b) ((a)==(b))
2036 #define __Pyx_c_sum_float(a, b) ((a)+(b))
2037 #define __Pyx_c_diff_float(a, b) ((a)-(b))
2038 #define __Pyx_c_prod_float(a, b) ((a)*(b))
2039 #define __Pyx_c_quot_float(a, b) ((a)/(b))
2040 #define __Pyx_c_neg_float(a) (-(a))
2041 #ifdef __cplusplus
2042 #define __Pyx_c_is_zero_float(z) ((z)==(float)0)
2043 #define __Pyx_c_conj_float(z) (::std::conj(z))
2044 #if 1
2045 #define __Pyx_c_abs_float(z) (::std::abs(z))
2046 #define __Pyx_c_pow_float(a, b) (::std::pow(a, b))
2047 #endif
2048 #else
2049 #define __Pyx_c_is_zero_float(z) ((z)==0)
2050 #define __Pyx_c_conj_float(z) (conjf(z))
2051 #if 1
2052 #define __Pyx_c_abs_float(z) (cabsf(z))
2053 #define __Pyx_c_pow_float(a, b) (cpowf(a, b))
2054 #endif
2055 #endif
2056 #else
2057 static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex);
2058 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex);
2059 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex);
2060 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex);
2061 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex);
2062 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex);
2063 static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex);
2064 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex);
2065 #if 1
2066 static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex);
2067 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex);
2068 #endif
2069 #endif
2070
2071 /* Arithmetic.proto */
2072 #if CYTHON_CCOMPLEX
2073 #define __Pyx_c_eq_double(a, b) ((a)==(b))
2074 #define __Pyx_c_sum_double(a, b) ((a)+(b))
2075 #define __Pyx_c_diff_double(a, b) ((a)-(b))
2076 #define __Pyx_c_prod_double(a, b) ((a)*(b))
2077 #define __Pyx_c_quot_double(a, b) ((a)/(b))
2078 #define __Pyx_c_neg_double(a) (-(a))
2079 #ifdef __cplusplus
2080 #define __Pyx_c_is_zero_double(z) ((z)==(double)0)
2081 #define __Pyx_c_conj_double(z) (::std::conj(z))
2082 #if 1
2083 #define __Pyx_c_abs_double(z) (::std::abs(z))
2084 #define __Pyx_c_pow_double(a, b) (::std::pow(a, b))
2085 #endif
2086 #else
2087 #define __Pyx_c_is_zero_double(z) ((z)==0)
2088 #define __Pyx_c_conj_double(z) (conj(z))
2089 #if 1
2090 #define __Pyx_c_abs_double(z) (cabs(z))
2091 #define __Pyx_c_pow_double(a, b) (cpow(a, b))
2092 #endif
2093 #endif
2094 #else
2095 static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex);
2096 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex);
2097 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex);
2098 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex);
2099 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex);
2100 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex);
2101 static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex);
2102 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex);
2103 #if 1
2104 static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex);
2105 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex);
2106 #endif
2107 #endif
2108
2109 /* CIntToPy.proto */
2110 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value);
2111
2112 /* CIntFromPy.proto */
2113 static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *);
2114
2115 /* CIntToPy.proto */
2116 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
2117
2118 /* CIntFromPy.proto */
2119 static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
2120
2121 /* CIntToPy.proto */
2122 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_PY_LONG_LONG(unsigned PY_LONG_LONG value);
2123
2124 /* CIntFromPy.proto */
2125 static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_As_unsigned_PY_LONG_LONG(PyObject *);
2126
2127 /* CIntToPy.proto */
2128 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_short(unsigned short value);
2129
2130 /* CIntFromPy.proto */
2131 static CYTHON_INLINE unsigned short __Pyx_PyInt_As_unsigned_short(PyObject *);
2132
2133 /* CIntFromPy.proto */
2134 static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
2135
2136 /* CIntToPy.proto */
2137 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
2138
2139 /* FastTypeChecks.proto */
2140 #if CYTHON_COMPILING_IN_CPYTHON
2141 #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type)
2142 static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b);
2143 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type);
2144 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2);
2145 #else
2146 #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
2147 #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type)
2148 #define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2))
2149 #endif
2150 #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception)
2151
2152 /* CheckBinaryVersion.proto */
2153 static int __Pyx_check_binary_version(void);
2154
2155 /* InitStrings.proto */
2156 static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
2157
2158 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_14SummarizedData_accumulate_interval_value(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_s, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_e, float __pyx_v_val); /* proto*/
2159 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_12BlockHandler_handle_block(CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_block_data, CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_bbi_file); /* proto*/
2160 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_visit_blocks_in_region(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *__pyx_v_handler); /* proto*/
2161 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size, int __pyx_skip_dispatch); /* proto*/
2162 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize_from_full(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, char *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size, int __pyx_skip_dispatch); /* proto*/
2163 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size, int __pyx_skip_dispatch); /* proto*/
2164 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__get_chrom_id_and_size(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, char *__pyx_v_chrom); /* proto*/
2165 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__summarize_from_full(CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, CYTHON_UNUSED __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id, CYTHON_UNUSED __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, CYTHON_UNUSED __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, CYTHON_UNUSED int __pyx_v_summary_size); /* proto*/
2166 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__best_zoom_level(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, int __pyx_v_desired_reduction); /* proto*/
2167 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_9ZoomLevel__get_summary_slice(CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_end, PyObject *__pyx_v_summaries); /* proto*/
2168 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_9ZoomLevel__summarize(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size); /* proto*/
2169
2170 /* Module declarations from 'bx.bbi.types' */
2171
2172 /* Module declarations from 'bx.bbi.bpt_file' */
2173 static PyTypeObject *__pyx_ptype_2bx_3bbi_8bpt_file_BPTFile = 0;
2174
2175 /* Module declarations from 'bx.bbi.cirtree_file' */
2176 static PyTypeObject *__pyx_ptype_2bx_3bbi_12cirtree_file_CIRTreeFile = 0;
2177
2178 /* Module declarations from 'cpython.buffer' */
2179
2180 /* Module declarations from 'libc.string' */
2181
2182 /* Module declarations from 'libc.stdio' */
2183
2184 /* Module declarations from '__builtin__' */
2185
2186 /* Module declarations from 'cpython.type' */
2187 static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0;
2188
2189 /* Module declarations from 'cpython' */
2190
2191 /* Module declarations from 'cpython.object' */
2192
2193 /* Module declarations from 'cpython.ref' */
2194
2195 /* Module declarations from 'cpython.mem' */
2196
2197 /* Module declarations from 'numpy' */
2198
2199 /* Module declarations from 'numpy' */
2200 static PyTypeObject *__pyx_ptype_5numpy_dtype = 0;
2201 static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0;
2202 static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0;
2203 static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0;
2204 static PyTypeObject *__pyx_ptype_5numpy_generic = 0;
2205 static PyTypeObject *__pyx_ptype_5numpy_number = 0;
2206 static PyTypeObject *__pyx_ptype_5numpy_integer = 0;
2207 static PyTypeObject *__pyx_ptype_5numpy_signedinteger = 0;
2208 static PyTypeObject *__pyx_ptype_5numpy_unsignedinteger = 0;
2209 static PyTypeObject *__pyx_ptype_5numpy_inexact = 0;
2210 static PyTypeObject *__pyx_ptype_5numpy_floating = 0;
2211 static PyTypeObject *__pyx_ptype_5numpy_complexfloating = 0;
2212 static PyTypeObject *__pyx_ptype_5numpy_flexible = 0;
2213 static PyTypeObject *__pyx_ptype_5numpy_character = 0;
2214 static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0;
2215
2216 /* Module declarations from 'cpython.version' */
2217
2218 /* Module declarations from 'cython' */
2219
2220 /* Module declarations from 'libc' */
2221
2222 /* Module declarations from 'libc.limits' */
2223
2224 /* Module declarations from 'bx.bbi.bbi_file' */
2225 static PyTypeObject *__pyx_ptype_2bx_3bbi_8bbi_file_SummaryBlock = 0;
2226 static PyTypeObject *__pyx_ptype_2bx_3bbi_8bbi_file_SummarizedData = 0;
2227 static PyTypeObject *__pyx_ptype_2bx_3bbi_8bbi_file_BBIFile = 0;
2228 static PyTypeObject *__pyx_ptype_2bx_3bbi_8bbi_file_BlockHandler = 0;
2229 static PyTypeObject *__pyx_ptype_2bx_3bbi_8bbi_file_ZoomLevel = 0;
2230 __PYX_EXTERN_C DL_EXPORT(int) big_wig_sig;
2231 __PYX_EXTERN_C DL_EXPORT(int) big_bed_sig;
2232 static CYTHON_INLINE int __pyx_f_2bx_3bbi_8bbi_file_range_intersection(int, int, int, int); /*proto*/
2233 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummaryBlock__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *, PyObject *); /*proto*/
2234 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummarizedData__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *, PyObject *); /*proto*/
2235 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BlockHandler__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *, PyObject *); /*proto*/
2236 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BBIFile__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, PyObject *); /*proto*/
2237 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_ZoomLevel__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *, PyObject *); /*proto*/
2238 static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t = { "float64_t", NULL, sizeof(__pyx_t_5numpy_float64_t), { 0 }, 0, 'R', 0, 0 };
2239 #define __Pyx_MODULE_NAME "bx.bbi.bbi_file"
2240 extern int __pyx_module_is_main_bx__bbi__bbi_file;
2241 int __pyx_module_is_main_bx__bbi__bbi_file = 0;
2242
2243 /* Implementation of 'bx.bbi.bbi_file' */
2244 static PyObject *__pyx_builtin_ValueError;
2245 static PyObject *__pyx_builtin_range;
2246 static PyObject *__pyx_builtin_ImportError;
2247 static const char __pyx_k_II[] = "II";
2248 static const char __pyx_k_io[] = "io";
2249 static const char __pyx_k_end[] = "end";
2250 static const char __pyx_k_max[] = "max";
2251 static const char __pyx_k_min[] = "min";
2252 static const char __pyx_k_nan[] = "nan";
2253 static const char __pyx_k_new[] = "__new__";
2254 static const char __pyx_k_sys[] = "sys";
2255 static const char __pyx_k_dict[] = "__dict__";
2256 static const char __pyx_k_file[] = "file";
2257 static const char __pyx_k_find[] = "find";
2258 static const char __pyx_k_main[] = "__main__";
2259 static const char __pyx_k_math[] = "math";
2260 static const char __pyx_k_mean[] = "mean";
2261 static const char __pyx_k_name[] = "__name__";
2262 static const char __pyx_k_open[] = "open";
2263 static const char __pyx_k_read[] = "read";
2264 static const char __pyx_k_seek[] = "seek";
2265 static const char __pyx_k_size[] = "size";
2266 static const char __pyx_k_skip[] = "skip";
2267 static const char __pyx_k_sqrt[] = "sqrt";
2268 static const char __pyx_k_test[] = "__test__";
2269 static const char __pyx_k_zlib[] = "zlib";
2270 static const char __pyx_k_chrom[] = "chrom";
2271 static const char __pyx_k_deque[] = "deque";
2272 static const char __pyx_k_dtype[] = "dtype";
2273 static const char __pyx_k_numpy[] = "numpy";
2274 static const char __pyx_k_query[] = "query";
2275 static const char __pyx_k_range[] = "range";
2276 static const char __pyx_k_start[] = "start";
2277 static const char __pyx_k_zeros[] = "zeros";
2278 static const char __pyx_k_append[] = "append";
2279 static const char __pyx_k_encode[] = "encode";
2280 static const char __pyx_k_import[] = "__import__";
2281 static const char __pyx_k_pickle[] = "pickle";
2282 static const char __pyx_k_reduce[] = "__reduce__";
2283 static const char __pyx_k_unpack[] = "unpack";
2284 static const char __pyx_k_update[] = "update";
2285 static const char __pyx_k_BBIFile[] = "BBIFile";
2286 static const char __pyx_k_BytesIO[] = "BytesIO";
2287 static const char __pyx_k_float64[] = "float64";
2288 static const char __pyx_k_max_val[] = "max_val";
2289 static const char __pyx_k_min_val[] = "min_val";
2290 static const char __pyx_k_popleft[] = "popleft";
2291 static const char __pyx_k_std_dev[] = "std_dev";
2292 static const char __pyx_k_chrom_id[] = "chrom_id";
2293 static const char __pyx_k_coverage[] = "coverage";
2294 static const char __pyx_k_getstate[] = "__getstate__";
2295 static const char __pyx_k_pyx_type[] = "__pyx_type";
2296 static const char __pyx_k_setstate[] = "__setstate__";
2297 static const char __pyx_k_sum_data[] = "sum_data";
2298 static const char __pyx_k_ZoomLevel[] = "ZoomLevel";
2299 static const char __pyx_k_pyx_state[] = "__pyx_state";
2300 static const char __pyx_k_reduce_ex[] = "__reduce_ex__";
2301 static const char __pyx_k_summarize[] = "summarize";
2302 static const char __pyx_k_type_name[] = "type_name";
2303 static const char __pyx_k_ValueError[] = "ValueError";
2304 static const char __pyx_k_decompress[] = "decompress";
2305 static const char __pyx_k_pyx_result[] = "__pyx_result";
2306 static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__";
2307 static const char __pyx_k_read_float[] = "read_float";
2308 static const char __pyx_k_ImportError[] = "ImportError";
2309 static const char __pyx_k_PickleError[] = "PickleError";
2310 static const char __pyx_k_collections[] = "collections";
2311 static const char __pyx_k_read_uint16[] = "read_uint16";
2312 static const char __pyx_k_read_uint32[] = "read_uint32";
2313 static const char __pyx_k_read_uint64[] = "read_uint64";
2314 static const char __pyx_k_sum_squares[] = "sum_squares";
2315 static const char __pyx_k_valid_count[] = "valid_count";
2316 static const char __pyx_k_BlockHandler[] = "BlockHandler";
2317 static const char __pyx_k_SummaryBlock[] = "SummaryBlock";
2318 static const char __pyx_k_expected_sig[] = "expected_sig";
2319 static const char __pyx_k_pyx_checksum[] = "__pyx_checksum";
2320 static const char __pyx_k_stringsource[] = "stringsource";
2321 static const char __pyx_k_summary_size[] = "summary_size";
2322 static const char __pyx_k_reduce_cython[] = "__reduce_cython__";
2323 static const char __pyx_k_SummarizedData[] = "SummarizedData";
2324 static const char __pyx_k_bx_bbi_bbi_file[] = "bx.bbi.bbi_file";
2325 static const char __pyx_k_byteswap_needed[] = "byteswap_needed";
2326 static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError";
2327 static const char __pyx_k_setstate_cython[] = "__setstate_cython__";
2328 static const char __pyx_k_BinaryFileReader[] = "BinaryFileReader";
2329 static const char __pyx_k_is_little_endian[] = "is_little_endian";
2330 static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback";
2331 static const char __pyx_k_bx_misc_binary_file[] = "bx.misc.binary_file";
2332 static const char __pyx_k_summarize_from_full[] = "summarize_from_full";
2333 static const char __pyx_k_pyx_unpickle_BBIFile[] = "__pyx_unpickle_BBIFile";
2334 static const char __pyx_k_pyx_unpickle_ZoomLevel[] = "__pyx_unpickle_ZoomLevel";
2335 static const char __pyx_k_find_overlapping_blocks[] = "find_overlapping_blocks";
2336 static const char __pyx_k_summary_blocks_in_region[] = "_summary_blocks_in_region";
2337 static const char __pyx_k_pyx_unpickle_BlockHandler[] = "__pyx_unpickle_BlockHandler";
2338 static const char __pyx_k_pyx_unpickle_SummaryBlock[] = "__pyx_unpickle_SummaryBlock";
2339 static const char __pyx_k_pyx_unpickle_SummarizedData[] = "__pyx_unpickle_SummarizedData";
2340 static const char __pyx_k_Core_implementation_for_reading[] = "\nCore implementation for reading UCSC \"big binary indexed\" files.\n\nThere isn't really any specification for the format beyond the code, so this\nmirrors Jim Kent's 'bbiRead.c' mostly. \n";
2341 static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import";
2342 static const char __pyx_k_Incompatible_checksums_s_vs_0x36[] = "Incompatible checksums (%s vs 0x3665355 = (bbi_file, data_offset, index_offset, item_count, reduction_level, reserved))";
2343 static const char __pyx_k_Incompatible_checksums_s_vs_0x55[] = "Incompatible checksums (%s vs 0x5566878 = (as_offset, chrom_bpt, chrom_tree_offset, defined_field_count, field_count, file, is_byteswapped, level_list, magic, reader, total_summary_offset, uncompress_buf_size, unzoomed_data_offset, unzoomed_index_offset, version, zoom_levels))";
2344 static const char __pyx_k_Incompatible_checksums_s_vs_0x73[] = "Incompatible checksums (%s vs 0x732cf8a = (chrom_id, end, max_val, min_val, start, sum_data, sum_squares, valid_count))";
2345 static const char __pyx_k_Incompatible_checksums_s_vs_0xd4[] = "Incompatible checksums (%s vs 0xd41d8cd = ())";
2346 static const char __pyx_k_Incompatible_checksums_s_vs_0xf7[] = "Incompatible checksums (%s vs 0xf78375f = (end, max_val, min_val, size, start, sum_data, sum_squares, valid_count))";
2347 static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import";
2348 static PyObject *__pyx_n_s_BBIFile;
2349 static PyObject *__pyx_n_s_BinaryFileReader;
2350 static PyObject *__pyx_n_s_BlockHandler;
2351 static PyObject *__pyx_n_s_BytesIO;
2352 static PyObject *__pyx_n_s_II;
2353 static PyObject *__pyx_n_s_ImportError;
2354 static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x36;
2355 static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x55;
2356 static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x73;
2357 static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0xd4;
2358 static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0xf7;
2359 static PyObject *__pyx_n_s_PickleError;
2360 static PyObject *__pyx_n_s_SummarizedData;
2361 static PyObject *__pyx_n_s_SummaryBlock;
2362 static PyObject *__pyx_n_s_ValueError;
2363 static PyObject *__pyx_n_s_ZoomLevel;
2364 static PyObject *__pyx_n_s_append;
2365 static PyObject *__pyx_n_s_bx_bbi_bbi_file;
2366 static PyObject *__pyx_n_s_bx_misc_binary_file;
2367 static PyObject *__pyx_n_s_byteswap_needed;
2368 static PyObject *__pyx_n_s_chrom;
2369 static PyObject *__pyx_n_s_chrom_id;
2370 static PyObject *__pyx_n_s_cline_in_traceback;
2371 static PyObject *__pyx_n_s_collections;
2372 static PyObject *__pyx_n_s_coverage;
2373 static PyObject *__pyx_n_s_decompress;
2374 static PyObject *__pyx_n_s_deque;
2375 static PyObject *__pyx_n_s_dict;
2376 static PyObject *__pyx_n_s_dtype;
2377 static PyObject *__pyx_n_s_encode;
2378 static PyObject *__pyx_n_s_end;
2379 static PyObject *__pyx_n_s_expected_sig;
2380 static PyObject *__pyx_n_s_file;
2381 static PyObject *__pyx_n_s_find;
2382 static PyObject *__pyx_n_s_find_overlapping_blocks;
2383 static PyObject *__pyx_n_s_float64;
2384 static PyObject *__pyx_n_s_getstate;
2385 static PyObject *__pyx_n_s_import;
2386 static PyObject *__pyx_n_s_io;
2387 static PyObject *__pyx_n_s_is_little_endian;
2388 static PyObject *__pyx_n_s_main;
2389 static PyObject *__pyx_n_s_math;
2390 static PyObject *__pyx_n_s_max;
2391 static PyObject *__pyx_n_s_max_val;
2392 static PyObject *__pyx_n_s_mean;
2393 static PyObject *__pyx_n_s_min;
2394 static PyObject *__pyx_n_s_min_val;
2395 static PyObject *__pyx_n_s_name;
2396 static PyObject *__pyx_n_s_nan;
2397 static PyObject *__pyx_n_s_new;
2398 static PyObject *__pyx_n_s_numpy;
2399 static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to;
2400 static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor;
2401 static PyObject *__pyx_n_s_open;
2402 static PyObject *__pyx_n_s_pickle;
2403 static PyObject *__pyx_n_s_popleft;
2404 static PyObject *__pyx_n_s_pyx_PickleError;
2405 static PyObject *__pyx_n_s_pyx_checksum;
2406 static PyObject *__pyx_n_s_pyx_result;
2407 static PyObject *__pyx_n_s_pyx_state;
2408 static PyObject *__pyx_n_s_pyx_type;
2409 static PyObject *__pyx_n_s_pyx_unpickle_BBIFile;
2410 static PyObject *__pyx_n_s_pyx_unpickle_BlockHandler;
2411 static PyObject *__pyx_n_s_pyx_unpickle_SummarizedData;
2412 static PyObject *__pyx_n_s_pyx_unpickle_SummaryBlock;
2413 static PyObject *__pyx_n_s_pyx_unpickle_ZoomLevel;
2414 static PyObject *__pyx_n_s_pyx_vtable;
2415 static PyObject *__pyx_n_s_query;
2416 static PyObject *__pyx_n_s_range;
2417 static PyObject *__pyx_n_s_read;
2418 static PyObject *__pyx_n_s_read_float;
2419 static PyObject *__pyx_n_s_read_uint16;
2420 static PyObject *__pyx_n_s_read_uint32;
2421 static PyObject *__pyx_n_s_read_uint64;
2422 static PyObject *__pyx_n_s_reduce;
2423 static PyObject *__pyx_n_s_reduce_cython;
2424 static PyObject *__pyx_n_s_reduce_ex;
2425 static PyObject *__pyx_n_s_seek;
2426 static PyObject *__pyx_n_s_setstate;
2427 static PyObject *__pyx_n_s_setstate_cython;
2428 static PyObject *__pyx_n_s_size;
2429 static PyObject *__pyx_n_s_skip;
2430 static PyObject *__pyx_n_s_sqrt;
2431 static PyObject *__pyx_n_s_start;
2432 static PyObject *__pyx_n_s_std_dev;
2433 static PyObject *__pyx_kp_s_stringsource;
2434 static PyObject *__pyx_n_s_sum_data;
2435 static PyObject *__pyx_n_s_sum_squares;
2436 static PyObject *__pyx_n_s_summarize;
2437 static PyObject *__pyx_n_s_summarize_from_full;
2438 static PyObject *__pyx_n_s_summary_blocks_in_region;
2439 static PyObject *__pyx_n_s_summary_size;
2440 static PyObject *__pyx_n_s_sys;
2441 static PyObject *__pyx_n_s_test;
2442 static PyObject *__pyx_n_s_type_name;
2443 static PyObject *__pyx_n_s_unpack;
2444 static PyObject *__pyx_n_s_update;
2445 static PyObject *__pyx_n_s_valid_count;
2446 static PyObject *__pyx_n_s_zeros;
2447 static PyObject *__pyx_n_s_zlib;
2448 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self); /* proto */
2449 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2450 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_5start___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self); /* proto */
2451 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_5start_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2452 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_3end___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self); /* proto */
2453 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_3end_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2454 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self); /* proto */
2455 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2456 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self); /* proto */
2457 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2458 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self); /* proto */
2459 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2460 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self); /* proto */
2461 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2462 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self); /* proto */
2463 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2464 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock___reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self); /* proto */
2465 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_2__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
2466 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData___init__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_size); /* proto */
2467 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_5start___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2468 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_5start_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2469 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_3end___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2470 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_3end_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2471 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4size___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2472 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4size_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2473 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2474 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2475 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2476 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2477 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2478 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2479 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2480 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2481 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2482 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2483 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2484 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2485 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2486 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2487 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2488 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_2__reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self); /* proto */
2489 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
2490 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12BlockHandler___reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *__pyx_v_self); /* proto */
2491 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12BlockHandler_2__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
2492 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile___init__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_file, PyObject *__pyx_v_expected_sig, PyObject *__pyx_v_type_name); /* proto */
2493 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_2open(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_file, PyObject *__pyx_v_expected_sig, CYTHON_UNUSED PyObject *__pyx_v_type_name); /* proto */
2494 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_4summarize(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size); /* proto */
2495 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_6summarize_from_full(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, char *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size); /* proto */
2496 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_8query(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size); /* proto */
2497 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_5magic___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self); /* proto */
2498 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_5magic_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2499 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_7version___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self); /* proto */
2500 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_7version_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2501 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self); /* proto */
2502 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2503 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self); /* proto */
2504 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2505 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self); /* proto */
2506 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10__reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self); /* proto */
2507 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_12__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
2508 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end); /* proto */
2509 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self); /* proto */
2510 static int __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2511 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self); /* proto */
2512 static int __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2513 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self); /* proto */
2514 static int __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
2515 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_2__reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self); /* proto */
2516 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_4__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
2517 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file___pyx_unpickle_SummaryBlock(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
2518 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_2__pyx_unpickle_SummarizedData(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
2519 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_4__pyx_unpickle_BlockHandler(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
2520 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_6__pyx_unpickle_BBIFile(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
2521 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_8__pyx_unpickle_ZoomLevel(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
2522 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_SummaryBlock(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
2523 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_SummarizedData(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
2524 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_BBIFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
2525 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_BlockHandler(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
2526 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_ZoomLevel(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
2527 static PyObject *__pyx_int_0;
2528 static PyObject *__pyx_int_1;
2529 static PyObject *__pyx_int_28;
2530 static PyObject *__pyx_int_32;
2531 static PyObject *__pyx_int_64;
2532 static PyObject *__pyx_int_57037653;
2533 static PyObject *__pyx_int_89548920;
2534 static PyObject *__pyx_int_120770442;
2535 static PyObject *__pyx_int_222419149;
2536 static PyObject *__pyx_int_259536735;
2537 static PyObject *__pyx_tuple_;
2538 static PyObject *__pyx_tuple__2;
2539 static PyObject *__pyx_tuple__3;
2540 static PyObject *__pyx_tuple__4;
2541 static PyObject *__pyx_tuple__6;
2542 static PyObject *__pyx_tuple__8;
2543 static PyObject *__pyx_tuple__10;
2544 static PyObject *__pyx_tuple__12;
2545 static PyObject *__pyx_codeobj__5;
2546 static PyObject *__pyx_codeobj__7;
2547 static PyObject *__pyx_codeobj__9;
2548 static PyObject *__pyx_codeobj__11;
2549 static PyObject *__pyx_codeobj__13;
2550 /* Late includes */
2551 int big_wig_sig;
2552 int big_bed_sig;
2553
2554 /* "bx/bbi/bbi_file.pyx":41
2555 *
2556 * @cython.profile(False)
2557 * cdef inline int range_intersection( int start1, int end1, int start2, int end2 ): # <<<<<<<<<<<<<<
2558 * return min( end1, end2 ) - max( start1, start2 )
2559 *
2560 */
2561
__pyx_f_2bx_3bbi_8bbi_file_range_intersection(int __pyx_v_start1,int __pyx_v_end1,int __pyx_v_start2,int __pyx_v_end2)2562 static CYTHON_INLINE int __pyx_f_2bx_3bbi_8bbi_file_range_intersection(int __pyx_v_start1, int __pyx_v_end1, int __pyx_v_start2, int __pyx_v_end2) {
2563 int __pyx_r;
2564 __Pyx_RefNannyDeclarations
2565 int __pyx_t_1;
2566 int __pyx_t_2;
2567 int __pyx_t_3;
2568 int __pyx_t_4;
2569 __Pyx_RefNannySetupContext("range_intersection", 0);
2570
2571 /* "bx/bbi/bbi_file.pyx":42
2572 * @cython.profile(False)
2573 * cdef inline int range_intersection( int start1, int end1, int start2, int end2 ):
2574 * return min( end1, end2 ) - max( start1, start2 ) # <<<<<<<<<<<<<<
2575 *
2576 * @cython.profile(False)
2577 */
2578 __pyx_t_1 = __pyx_v_end2;
2579 __pyx_t_2 = __pyx_v_end1;
2580 if (((__pyx_t_1 < __pyx_t_2) != 0)) {
2581 __pyx_t_3 = __pyx_t_1;
2582 } else {
2583 __pyx_t_3 = __pyx_t_2;
2584 }
2585 __pyx_t_1 = __pyx_v_start2;
2586 __pyx_t_2 = __pyx_v_start1;
2587 if (((__pyx_t_1 > __pyx_t_2) != 0)) {
2588 __pyx_t_4 = __pyx_t_1;
2589 } else {
2590 __pyx_t_4 = __pyx_t_2;
2591 }
2592 __pyx_r = (__pyx_t_3 - __pyx_t_4);
2593 goto __pyx_L0;
2594
2595 /* "bx/bbi/bbi_file.pyx":41
2596 *
2597 * @cython.profile(False)
2598 * cdef inline int range_intersection( int start1, int end1, int start2, int end2 ): # <<<<<<<<<<<<<<
2599 * return min( end1, end2 ) - max( start1, start2 )
2600 *
2601 */
2602
2603 /* function exit code */
2604 __pyx_L0:;
2605 __Pyx_RefNannyFinishContext();
2606 return __pyx_r;
2607 }
2608
2609 /* "bx/bbi/bbi_file.pyx":45
2610 *
2611 * @cython.profile(False)
2612 * cdef inline int imax(int a, int b): return a if a >= b else b # <<<<<<<<<<<<<<
2613 * @cython.profile(False)
2614 * cdef inline int imin(int a, int b): return a if a <= b else b
2615 */
2616
__pyx_f_2bx_3bbi_8bbi_file_imax(int __pyx_v_a,int __pyx_v_b)2617 static CYTHON_INLINE int __pyx_f_2bx_3bbi_8bbi_file_imax(int __pyx_v_a, int __pyx_v_b) {
2618 int __pyx_r;
2619 __Pyx_RefNannyDeclarations
2620 int __pyx_t_1;
2621 __Pyx_RefNannySetupContext("imax", 0);
2622 if (((__pyx_v_a >= __pyx_v_b) != 0)) {
2623 __pyx_t_1 = __pyx_v_a;
2624 } else {
2625 __pyx_t_1 = __pyx_v_b;
2626 }
2627 __pyx_r = __pyx_t_1;
2628 goto __pyx_L0;
2629
2630 /* function exit code */
2631 __pyx_L0:;
2632 __Pyx_RefNannyFinishContext();
2633 return __pyx_r;
2634 }
2635
2636 /* "bx/bbi/bbi_file.pyx":47
2637 * cdef inline int imax(int a, int b): return a if a >= b else b
2638 * @cython.profile(False)
2639 * cdef inline int imin(int a, int b): return a if a <= b else b # <<<<<<<<<<<<<<
2640 *
2641 * cdef enum summary_type:
2642 */
2643
__pyx_f_2bx_3bbi_8bbi_file_imin(int __pyx_v_a,int __pyx_v_b)2644 static CYTHON_INLINE int __pyx_f_2bx_3bbi_8bbi_file_imin(int __pyx_v_a, int __pyx_v_b) {
2645 int __pyx_r;
2646 __Pyx_RefNannyDeclarations
2647 int __pyx_t_1;
2648 __Pyx_RefNannySetupContext("imin", 0);
2649 if (((__pyx_v_a <= __pyx_v_b) != 0)) {
2650 __pyx_t_1 = __pyx_v_a;
2651 } else {
2652 __pyx_t_1 = __pyx_v_b;
2653 }
2654 __pyx_r = __pyx_t_1;
2655 goto __pyx_L0;
2656
2657 /* function exit code */
2658 __pyx_L0:;
2659 __Pyx_RefNannyFinishContext();
2660 return __pyx_r;
2661 }
2662
2663 /* "bx/bbi/bbi_file.pxd":12
2664 * A block of summary data from disk
2665 * """
2666 * cdef public bits32 chrom_id # <<<<<<<<<<<<<<
2667 * cdef public bits32 start
2668 * cdef public bits32 end
2669 */
2670
2671 /* Python wrapper */
2672 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_1__get__(PyObject * __pyx_v_self)2673 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_1__get__(PyObject *__pyx_v_self) {
2674 PyObject *__pyx_r = 0;
2675 __Pyx_RefNannyDeclarations
2676 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
2677 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self));
2678
2679 /* function exit code */
2680 __Pyx_RefNannyFinishContext();
2681 return __pyx_r;
2682 }
2683
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self)2684 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self) {
2685 PyObject *__pyx_r = NULL;
2686 __Pyx_RefNannyDeclarations
2687 PyObject *__pyx_t_1 = NULL;
2688 int __pyx_lineno = 0;
2689 const char *__pyx_filename = NULL;
2690 int __pyx_clineno = 0;
2691 __Pyx_RefNannySetupContext("__get__", 0);
2692 __Pyx_XDECREF(__pyx_r);
2693 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->chrom_id); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 12, __pyx_L1_error)
2694 __Pyx_GOTREF(__pyx_t_1);
2695 __pyx_r = __pyx_t_1;
2696 __pyx_t_1 = 0;
2697 goto __pyx_L0;
2698
2699 /* function exit code */
2700 __pyx_L1_error:;
2701 __Pyx_XDECREF(__pyx_t_1);
2702 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.chrom_id.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
2703 __pyx_r = NULL;
2704 __pyx_L0:;
2705 __Pyx_XGIVEREF(__pyx_r);
2706 __Pyx_RefNannyFinishContext();
2707 return __pyx_r;
2708 }
2709
2710 /* Python wrapper */
2711 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)2712 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
2713 int __pyx_r;
2714 __Pyx_RefNannyDeclarations
2715 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
2716 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self), ((PyObject *)__pyx_v_value));
2717
2718 /* function exit code */
2719 __Pyx_RefNannyFinishContext();
2720 return __pyx_r;
2721 }
2722
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self,PyObject * __pyx_v_value)2723 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value) {
2724 int __pyx_r;
2725 __Pyx_RefNannyDeclarations
2726 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_1;
2727 int __pyx_lineno = 0;
2728 const char *__pyx_filename = NULL;
2729 int __pyx_clineno = 0;
2730 __Pyx_RefNannySetupContext("__set__", 0);
2731 __pyx_t_1 = __Pyx_PyInt_As_unsigned_int(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(1, 12, __pyx_L1_error)
2732 __pyx_v_self->chrom_id = __pyx_t_1;
2733
2734 /* function exit code */
2735 __pyx_r = 0;
2736 goto __pyx_L0;
2737 __pyx_L1_error:;
2738 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.chrom_id.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
2739 __pyx_r = -1;
2740 __pyx_L0:;
2741 __Pyx_RefNannyFinishContext();
2742 return __pyx_r;
2743 }
2744
2745 /* "bx/bbi/bbi_file.pxd":13
2746 * """
2747 * cdef public bits32 chrom_id
2748 * cdef public bits32 start # <<<<<<<<<<<<<<
2749 * cdef public bits32 end
2750 * cdef public bits32 valid_count
2751 */
2752
2753 /* Python wrapper */
2754 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_5start_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_5start_1__get__(PyObject * __pyx_v_self)2755 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_5start_1__get__(PyObject *__pyx_v_self) {
2756 PyObject *__pyx_r = 0;
2757 __Pyx_RefNannyDeclarations
2758 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
2759 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_5start___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self));
2760
2761 /* function exit code */
2762 __Pyx_RefNannyFinishContext();
2763 return __pyx_r;
2764 }
2765
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_5start___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self)2766 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_5start___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self) {
2767 PyObject *__pyx_r = NULL;
2768 __Pyx_RefNannyDeclarations
2769 PyObject *__pyx_t_1 = NULL;
2770 int __pyx_lineno = 0;
2771 const char *__pyx_filename = NULL;
2772 int __pyx_clineno = 0;
2773 __Pyx_RefNannySetupContext("__get__", 0);
2774 __Pyx_XDECREF(__pyx_r);
2775 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->start); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 13, __pyx_L1_error)
2776 __Pyx_GOTREF(__pyx_t_1);
2777 __pyx_r = __pyx_t_1;
2778 __pyx_t_1 = 0;
2779 goto __pyx_L0;
2780
2781 /* function exit code */
2782 __pyx_L1_error:;
2783 __Pyx_XDECREF(__pyx_t_1);
2784 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.start.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
2785 __pyx_r = NULL;
2786 __pyx_L0:;
2787 __Pyx_XGIVEREF(__pyx_r);
2788 __Pyx_RefNannyFinishContext();
2789 return __pyx_r;
2790 }
2791
2792 /* Python wrapper */
2793 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_5start_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_5start_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)2794 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_5start_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
2795 int __pyx_r;
2796 __Pyx_RefNannyDeclarations
2797 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
2798 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_5start_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self), ((PyObject *)__pyx_v_value));
2799
2800 /* function exit code */
2801 __Pyx_RefNannyFinishContext();
2802 return __pyx_r;
2803 }
2804
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_5start_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self,PyObject * __pyx_v_value)2805 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_5start_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value) {
2806 int __pyx_r;
2807 __Pyx_RefNannyDeclarations
2808 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_1;
2809 int __pyx_lineno = 0;
2810 const char *__pyx_filename = NULL;
2811 int __pyx_clineno = 0;
2812 __Pyx_RefNannySetupContext("__set__", 0);
2813 __pyx_t_1 = __Pyx_PyInt_As_unsigned_int(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(1, 13, __pyx_L1_error)
2814 __pyx_v_self->start = __pyx_t_1;
2815
2816 /* function exit code */
2817 __pyx_r = 0;
2818 goto __pyx_L0;
2819 __pyx_L1_error:;
2820 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.start.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
2821 __pyx_r = -1;
2822 __pyx_L0:;
2823 __Pyx_RefNannyFinishContext();
2824 return __pyx_r;
2825 }
2826
2827 /* "bx/bbi/bbi_file.pxd":14
2828 * cdef public bits32 chrom_id
2829 * cdef public bits32 start
2830 * cdef public bits32 end # <<<<<<<<<<<<<<
2831 * cdef public bits32 valid_count
2832 * cdef public double min_val
2833 */
2834
2835 /* Python wrapper */
2836 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3end_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3end_1__get__(PyObject * __pyx_v_self)2837 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3end_1__get__(PyObject *__pyx_v_self) {
2838 PyObject *__pyx_r = 0;
2839 __Pyx_RefNannyDeclarations
2840 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
2841 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_3end___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self));
2842
2843 /* function exit code */
2844 __Pyx_RefNannyFinishContext();
2845 return __pyx_r;
2846 }
2847
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_3end___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self)2848 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_3end___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self) {
2849 PyObject *__pyx_r = NULL;
2850 __Pyx_RefNannyDeclarations
2851 PyObject *__pyx_t_1 = NULL;
2852 int __pyx_lineno = 0;
2853 const char *__pyx_filename = NULL;
2854 int __pyx_clineno = 0;
2855 __Pyx_RefNannySetupContext("__get__", 0);
2856 __Pyx_XDECREF(__pyx_r);
2857 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->end); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 14, __pyx_L1_error)
2858 __Pyx_GOTREF(__pyx_t_1);
2859 __pyx_r = __pyx_t_1;
2860 __pyx_t_1 = 0;
2861 goto __pyx_L0;
2862
2863 /* function exit code */
2864 __pyx_L1_error:;
2865 __Pyx_XDECREF(__pyx_t_1);
2866 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.end.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
2867 __pyx_r = NULL;
2868 __pyx_L0:;
2869 __Pyx_XGIVEREF(__pyx_r);
2870 __Pyx_RefNannyFinishContext();
2871 return __pyx_r;
2872 }
2873
2874 /* Python wrapper */
2875 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3end_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3end_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)2876 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3end_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
2877 int __pyx_r;
2878 __Pyx_RefNannyDeclarations
2879 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
2880 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_3end_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self), ((PyObject *)__pyx_v_value));
2881
2882 /* function exit code */
2883 __Pyx_RefNannyFinishContext();
2884 return __pyx_r;
2885 }
2886
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_3end_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self,PyObject * __pyx_v_value)2887 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_3end_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value) {
2888 int __pyx_r;
2889 __Pyx_RefNannyDeclarations
2890 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_1;
2891 int __pyx_lineno = 0;
2892 const char *__pyx_filename = NULL;
2893 int __pyx_clineno = 0;
2894 __Pyx_RefNannySetupContext("__set__", 0);
2895 __pyx_t_1 = __Pyx_PyInt_As_unsigned_int(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(1, 14, __pyx_L1_error)
2896 __pyx_v_self->end = __pyx_t_1;
2897
2898 /* function exit code */
2899 __pyx_r = 0;
2900 goto __pyx_L0;
2901 __pyx_L1_error:;
2902 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.end.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
2903 __pyx_r = -1;
2904 __pyx_L0:;
2905 __Pyx_RefNannyFinishContext();
2906 return __pyx_r;
2907 }
2908
2909 /* "bx/bbi/bbi_file.pxd":15
2910 * cdef public bits32 start
2911 * cdef public bits32 end
2912 * cdef public bits32 valid_count # <<<<<<<<<<<<<<
2913 * cdef public double min_val
2914 * cdef public double max_val
2915 */
2916
2917 /* Python wrapper */
2918 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_1__get__(PyObject * __pyx_v_self)2919 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_1__get__(PyObject *__pyx_v_self) {
2920 PyObject *__pyx_r = 0;
2921 __Pyx_RefNannyDeclarations
2922 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
2923 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self));
2924
2925 /* function exit code */
2926 __Pyx_RefNannyFinishContext();
2927 return __pyx_r;
2928 }
2929
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self)2930 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self) {
2931 PyObject *__pyx_r = NULL;
2932 __Pyx_RefNannyDeclarations
2933 PyObject *__pyx_t_1 = NULL;
2934 int __pyx_lineno = 0;
2935 const char *__pyx_filename = NULL;
2936 int __pyx_clineno = 0;
2937 __Pyx_RefNannySetupContext("__get__", 0);
2938 __Pyx_XDECREF(__pyx_r);
2939 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->valid_count); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 15, __pyx_L1_error)
2940 __Pyx_GOTREF(__pyx_t_1);
2941 __pyx_r = __pyx_t_1;
2942 __pyx_t_1 = 0;
2943 goto __pyx_L0;
2944
2945 /* function exit code */
2946 __pyx_L1_error:;
2947 __Pyx_XDECREF(__pyx_t_1);
2948 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.valid_count.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
2949 __pyx_r = NULL;
2950 __pyx_L0:;
2951 __Pyx_XGIVEREF(__pyx_r);
2952 __Pyx_RefNannyFinishContext();
2953 return __pyx_r;
2954 }
2955
2956 /* Python wrapper */
2957 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)2958 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
2959 int __pyx_r;
2960 __Pyx_RefNannyDeclarations
2961 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
2962 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self), ((PyObject *)__pyx_v_value));
2963
2964 /* function exit code */
2965 __Pyx_RefNannyFinishContext();
2966 return __pyx_r;
2967 }
2968
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self,PyObject * __pyx_v_value)2969 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value) {
2970 int __pyx_r;
2971 __Pyx_RefNannyDeclarations
2972 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_1;
2973 int __pyx_lineno = 0;
2974 const char *__pyx_filename = NULL;
2975 int __pyx_clineno = 0;
2976 __Pyx_RefNannySetupContext("__set__", 0);
2977 __pyx_t_1 = __Pyx_PyInt_As_unsigned_int(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(1, 15, __pyx_L1_error)
2978 __pyx_v_self->valid_count = __pyx_t_1;
2979
2980 /* function exit code */
2981 __pyx_r = 0;
2982 goto __pyx_L0;
2983 __pyx_L1_error:;
2984 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.valid_count.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
2985 __pyx_r = -1;
2986 __pyx_L0:;
2987 __Pyx_RefNannyFinishContext();
2988 return __pyx_r;
2989 }
2990
2991 /* "bx/bbi/bbi_file.pxd":16
2992 * cdef public bits32 end
2993 * cdef public bits32 valid_count
2994 * cdef public double min_val # <<<<<<<<<<<<<<
2995 * cdef public double max_val
2996 * cdef public double sum_data
2997 */
2998
2999 /* Python wrapper */
3000 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_1__get__(PyObject * __pyx_v_self)3001 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_1__get__(PyObject *__pyx_v_self) {
3002 PyObject *__pyx_r = 0;
3003 __Pyx_RefNannyDeclarations
3004 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
3005 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self));
3006
3007 /* function exit code */
3008 __Pyx_RefNannyFinishContext();
3009 return __pyx_r;
3010 }
3011
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self)3012 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self) {
3013 PyObject *__pyx_r = NULL;
3014 __Pyx_RefNannyDeclarations
3015 PyObject *__pyx_t_1 = NULL;
3016 int __pyx_lineno = 0;
3017 const char *__pyx_filename = NULL;
3018 int __pyx_clineno = 0;
3019 __Pyx_RefNannySetupContext("__get__", 0);
3020 __Pyx_XDECREF(__pyx_r);
3021 __pyx_t_1 = PyFloat_FromDouble(__pyx_v_self->min_val); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 16, __pyx_L1_error)
3022 __Pyx_GOTREF(__pyx_t_1);
3023 __pyx_r = __pyx_t_1;
3024 __pyx_t_1 = 0;
3025 goto __pyx_L0;
3026
3027 /* function exit code */
3028 __pyx_L1_error:;
3029 __Pyx_XDECREF(__pyx_t_1);
3030 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.min_val.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3031 __pyx_r = NULL;
3032 __pyx_L0:;
3033 __Pyx_XGIVEREF(__pyx_r);
3034 __Pyx_RefNannyFinishContext();
3035 return __pyx_r;
3036 }
3037
3038 /* Python wrapper */
3039 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)3040 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
3041 int __pyx_r;
3042 __Pyx_RefNannyDeclarations
3043 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
3044 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self), ((PyObject *)__pyx_v_value));
3045
3046 /* function exit code */
3047 __Pyx_RefNannyFinishContext();
3048 return __pyx_r;
3049 }
3050
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self,PyObject * __pyx_v_value)3051 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value) {
3052 int __pyx_r;
3053 __Pyx_RefNannyDeclarations
3054 double __pyx_t_1;
3055 int __pyx_lineno = 0;
3056 const char *__pyx_filename = NULL;
3057 int __pyx_clineno = 0;
3058 __Pyx_RefNannySetupContext("__set__", 0);
3059 __pyx_t_1 = __pyx_PyFloat_AsDouble(__pyx_v_value); if (unlikely((__pyx_t_1 == (double)-1) && PyErr_Occurred())) __PYX_ERR(1, 16, __pyx_L1_error)
3060 __pyx_v_self->min_val = __pyx_t_1;
3061
3062 /* function exit code */
3063 __pyx_r = 0;
3064 goto __pyx_L0;
3065 __pyx_L1_error:;
3066 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.min_val.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3067 __pyx_r = -1;
3068 __pyx_L0:;
3069 __Pyx_RefNannyFinishContext();
3070 return __pyx_r;
3071 }
3072
3073 /* "bx/bbi/bbi_file.pxd":17
3074 * cdef public bits32 valid_count
3075 * cdef public double min_val
3076 * cdef public double max_val # <<<<<<<<<<<<<<
3077 * cdef public double sum_data
3078 * cdef public double sum_squares
3079 */
3080
3081 /* Python wrapper */
3082 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_1__get__(PyObject * __pyx_v_self)3083 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_1__get__(PyObject *__pyx_v_self) {
3084 PyObject *__pyx_r = 0;
3085 __Pyx_RefNannyDeclarations
3086 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
3087 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self));
3088
3089 /* function exit code */
3090 __Pyx_RefNannyFinishContext();
3091 return __pyx_r;
3092 }
3093
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self)3094 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self) {
3095 PyObject *__pyx_r = NULL;
3096 __Pyx_RefNannyDeclarations
3097 PyObject *__pyx_t_1 = NULL;
3098 int __pyx_lineno = 0;
3099 const char *__pyx_filename = NULL;
3100 int __pyx_clineno = 0;
3101 __Pyx_RefNannySetupContext("__get__", 0);
3102 __Pyx_XDECREF(__pyx_r);
3103 __pyx_t_1 = PyFloat_FromDouble(__pyx_v_self->max_val); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 17, __pyx_L1_error)
3104 __Pyx_GOTREF(__pyx_t_1);
3105 __pyx_r = __pyx_t_1;
3106 __pyx_t_1 = 0;
3107 goto __pyx_L0;
3108
3109 /* function exit code */
3110 __pyx_L1_error:;
3111 __Pyx_XDECREF(__pyx_t_1);
3112 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.max_val.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3113 __pyx_r = NULL;
3114 __pyx_L0:;
3115 __Pyx_XGIVEREF(__pyx_r);
3116 __Pyx_RefNannyFinishContext();
3117 return __pyx_r;
3118 }
3119
3120 /* Python wrapper */
3121 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)3122 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
3123 int __pyx_r;
3124 __Pyx_RefNannyDeclarations
3125 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
3126 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self), ((PyObject *)__pyx_v_value));
3127
3128 /* function exit code */
3129 __Pyx_RefNannyFinishContext();
3130 return __pyx_r;
3131 }
3132
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self,PyObject * __pyx_v_value)3133 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value) {
3134 int __pyx_r;
3135 __Pyx_RefNannyDeclarations
3136 double __pyx_t_1;
3137 int __pyx_lineno = 0;
3138 const char *__pyx_filename = NULL;
3139 int __pyx_clineno = 0;
3140 __Pyx_RefNannySetupContext("__set__", 0);
3141 __pyx_t_1 = __pyx_PyFloat_AsDouble(__pyx_v_value); if (unlikely((__pyx_t_1 == (double)-1) && PyErr_Occurred())) __PYX_ERR(1, 17, __pyx_L1_error)
3142 __pyx_v_self->max_val = __pyx_t_1;
3143
3144 /* function exit code */
3145 __pyx_r = 0;
3146 goto __pyx_L0;
3147 __pyx_L1_error:;
3148 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.max_val.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3149 __pyx_r = -1;
3150 __pyx_L0:;
3151 __Pyx_RefNannyFinishContext();
3152 return __pyx_r;
3153 }
3154
3155 /* "bx/bbi/bbi_file.pxd":18
3156 * cdef public double min_val
3157 * cdef public double max_val
3158 * cdef public double sum_data # <<<<<<<<<<<<<<
3159 * cdef public double sum_squares
3160 *
3161 */
3162
3163 /* Python wrapper */
3164 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_1__get__(PyObject * __pyx_v_self)3165 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_1__get__(PyObject *__pyx_v_self) {
3166 PyObject *__pyx_r = 0;
3167 __Pyx_RefNannyDeclarations
3168 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
3169 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self));
3170
3171 /* function exit code */
3172 __Pyx_RefNannyFinishContext();
3173 return __pyx_r;
3174 }
3175
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self)3176 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self) {
3177 PyObject *__pyx_r = NULL;
3178 __Pyx_RefNannyDeclarations
3179 PyObject *__pyx_t_1 = NULL;
3180 int __pyx_lineno = 0;
3181 const char *__pyx_filename = NULL;
3182 int __pyx_clineno = 0;
3183 __Pyx_RefNannySetupContext("__get__", 0);
3184 __Pyx_XDECREF(__pyx_r);
3185 __pyx_t_1 = PyFloat_FromDouble(__pyx_v_self->sum_data); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 18, __pyx_L1_error)
3186 __Pyx_GOTREF(__pyx_t_1);
3187 __pyx_r = __pyx_t_1;
3188 __pyx_t_1 = 0;
3189 goto __pyx_L0;
3190
3191 /* function exit code */
3192 __pyx_L1_error:;
3193 __Pyx_XDECREF(__pyx_t_1);
3194 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.sum_data.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3195 __pyx_r = NULL;
3196 __pyx_L0:;
3197 __Pyx_XGIVEREF(__pyx_r);
3198 __Pyx_RefNannyFinishContext();
3199 return __pyx_r;
3200 }
3201
3202 /* Python wrapper */
3203 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)3204 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
3205 int __pyx_r;
3206 __Pyx_RefNannyDeclarations
3207 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
3208 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self), ((PyObject *)__pyx_v_value));
3209
3210 /* function exit code */
3211 __Pyx_RefNannyFinishContext();
3212 return __pyx_r;
3213 }
3214
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self,PyObject * __pyx_v_value)3215 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value) {
3216 int __pyx_r;
3217 __Pyx_RefNannyDeclarations
3218 double __pyx_t_1;
3219 int __pyx_lineno = 0;
3220 const char *__pyx_filename = NULL;
3221 int __pyx_clineno = 0;
3222 __Pyx_RefNannySetupContext("__set__", 0);
3223 __pyx_t_1 = __pyx_PyFloat_AsDouble(__pyx_v_value); if (unlikely((__pyx_t_1 == (double)-1) && PyErr_Occurred())) __PYX_ERR(1, 18, __pyx_L1_error)
3224 __pyx_v_self->sum_data = __pyx_t_1;
3225
3226 /* function exit code */
3227 __pyx_r = 0;
3228 goto __pyx_L0;
3229 __pyx_L1_error:;
3230 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.sum_data.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3231 __pyx_r = -1;
3232 __pyx_L0:;
3233 __Pyx_RefNannyFinishContext();
3234 return __pyx_r;
3235 }
3236
3237 /* "bx/bbi/bbi_file.pxd":19
3238 * cdef public double max_val
3239 * cdef public double sum_data
3240 * cdef public double sum_squares # <<<<<<<<<<<<<<
3241 *
3242 * cdef class SummarizedData:
3243 */
3244
3245 /* Python wrapper */
3246 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_1__get__(PyObject * __pyx_v_self)3247 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_1__get__(PyObject *__pyx_v_self) {
3248 PyObject *__pyx_r = 0;
3249 __Pyx_RefNannyDeclarations
3250 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
3251 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self));
3252
3253 /* function exit code */
3254 __Pyx_RefNannyFinishContext();
3255 return __pyx_r;
3256 }
3257
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self)3258 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self) {
3259 PyObject *__pyx_r = NULL;
3260 __Pyx_RefNannyDeclarations
3261 PyObject *__pyx_t_1 = NULL;
3262 int __pyx_lineno = 0;
3263 const char *__pyx_filename = NULL;
3264 int __pyx_clineno = 0;
3265 __Pyx_RefNannySetupContext("__get__", 0);
3266 __Pyx_XDECREF(__pyx_r);
3267 __pyx_t_1 = PyFloat_FromDouble(__pyx_v_self->sum_squares); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 19, __pyx_L1_error)
3268 __Pyx_GOTREF(__pyx_t_1);
3269 __pyx_r = __pyx_t_1;
3270 __pyx_t_1 = 0;
3271 goto __pyx_L0;
3272
3273 /* function exit code */
3274 __pyx_L1_error:;
3275 __Pyx_XDECREF(__pyx_t_1);
3276 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.sum_squares.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3277 __pyx_r = NULL;
3278 __pyx_L0:;
3279 __Pyx_XGIVEREF(__pyx_r);
3280 __Pyx_RefNannyFinishContext();
3281 return __pyx_r;
3282 }
3283
3284 /* Python wrapper */
3285 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)3286 static int __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
3287 int __pyx_r;
3288 __Pyx_RefNannyDeclarations
3289 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
3290 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self), ((PyObject *)__pyx_v_value));
3291
3292 /* function exit code */
3293 __Pyx_RefNannyFinishContext();
3294 return __pyx_r;
3295 }
3296
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self,PyObject * __pyx_v_value)3297 static int __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v_value) {
3298 int __pyx_r;
3299 __Pyx_RefNannyDeclarations
3300 double __pyx_t_1;
3301 int __pyx_lineno = 0;
3302 const char *__pyx_filename = NULL;
3303 int __pyx_clineno = 0;
3304 __Pyx_RefNannySetupContext("__set__", 0);
3305 __pyx_t_1 = __pyx_PyFloat_AsDouble(__pyx_v_value); if (unlikely((__pyx_t_1 == (double)-1) && PyErr_Occurred())) __PYX_ERR(1, 19, __pyx_L1_error)
3306 __pyx_v_self->sum_squares = __pyx_t_1;
3307
3308 /* function exit code */
3309 __pyx_r = 0;
3310 goto __pyx_L0;
3311 __pyx_L1_error:;
3312 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.sum_squares.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3313 __pyx_r = -1;
3314 __pyx_L0:;
3315 __Pyx_RefNannyFinishContext();
3316 return __pyx_r;
3317 }
3318
3319 /* "(tree fragment)":1
3320 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
3321 * cdef tuple state
3322 * cdef object _dict
3323 */
3324
3325 /* Python wrapper */
3326 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_1__reduce_cython__(PyObject * __pyx_v_self,CYTHON_UNUSED PyObject * unused)3327 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
3328 PyObject *__pyx_r = 0;
3329 __Pyx_RefNannyDeclarations
3330 __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
3331 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock___reduce_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self));
3332
3333 /* function exit code */
3334 __Pyx_RefNannyFinishContext();
3335 return __pyx_r;
3336 }
3337
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock___reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self)3338 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock___reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self) {
3339 PyObject *__pyx_v_state = 0;
3340 PyObject *__pyx_v__dict = 0;
3341 int __pyx_v_use_setstate;
3342 PyObject *__pyx_r = NULL;
3343 __Pyx_RefNannyDeclarations
3344 PyObject *__pyx_t_1 = NULL;
3345 PyObject *__pyx_t_2 = NULL;
3346 PyObject *__pyx_t_3 = NULL;
3347 PyObject *__pyx_t_4 = NULL;
3348 PyObject *__pyx_t_5 = NULL;
3349 PyObject *__pyx_t_6 = NULL;
3350 PyObject *__pyx_t_7 = NULL;
3351 PyObject *__pyx_t_8 = NULL;
3352 PyObject *__pyx_t_9 = NULL;
3353 int __pyx_t_10;
3354 int __pyx_t_11;
3355 int __pyx_lineno = 0;
3356 const char *__pyx_filename = NULL;
3357 int __pyx_clineno = 0;
3358 __Pyx_RefNannySetupContext("__reduce_cython__", 0);
3359
3360 /* "(tree fragment)":5
3361 * cdef object _dict
3362 * cdef bint use_setstate
3363 * state = (self.chrom_id, self.end, self.max_val, self.min_val, self.start, self.sum_data, self.sum_squares, self.valid_count) # <<<<<<<<<<<<<<
3364 * _dict = getattr(self, '__dict__', None)
3365 * if _dict is not None:
3366 */
3367 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->chrom_id); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 5, __pyx_L1_error)
3368 __Pyx_GOTREF(__pyx_t_1);
3369 __pyx_t_2 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->end); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
3370 __Pyx_GOTREF(__pyx_t_2);
3371 __pyx_t_3 = PyFloat_FromDouble(__pyx_v_self->max_val); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 5, __pyx_L1_error)
3372 __Pyx_GOTREF(__pyx_t_3);
3373 __pyx_t_4 = PyFloat_FromDouble(__pyx_v_self->min_val); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 5, __pyx_L1_error)
3374 __Pyx_GOTREF(__pyx_t_4);
3375 __pyx_t_5 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->start); if (unlikely(!__pyx_t_5)) __PYX_ERR(2, 5, __pyx_L1_error)
3376 __Pyx_GOTREF(__pyx_t_5);
3377 __pyx_t_6 = PyFloat_FromDouble(__pyx_v_self->sum_data); if (unlikely(!__pyx_t_6)) __PYX_ERR(2, 5, __pyx_L1_error)
3378 __Pyx_GOTREF(__pyx_t_6);
3379 __pyx_t_7 = PyFloat_FromDouble(__pyx_v_self->sum_squares); if (unlikely(!__pyx_t_7)) __PYX_ERR(2, 5, __pyx_L1_error)
3380 __Pyx_GOTREF(__pyx_t_7);
3381 __pyx_t_8 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->valid_count); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 5, __pyx_L1_error)
3382 __Pyx_GOTREF(__pyx_t_8);
3383 __pyx_t_9 = PyTuple_New(8); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 5, __pyx_L1_error)
3384 __Pyx_GOTREF(__pyx_t_9);
3385 __Pyx_GIVEREF(__pyx_t_1);
3386 PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_1);
3387 __Pyx_GIVEREF(__pyx_t_2);
3388 PyTuple_SET_ITEM(__pyx_t_9, 1, __pyx_t_2);
3389 __Pyx_GIVEREF(__pyx_t_3);
3390 PyTuple_SET_ITEM(__pyx_t_9, 2, __pyx_t_3);
3391 __Pyx_GIVEREF(__pyx_t_4);
3392 PyTuple_SET_ITEM(__pyx_t_9, 3, __pyx_t_4);
3393 __Pyx_GIVEREF(__pyx_t_5);
3394 PyTuple_SET_ITEM(__pyx_t_9, 4, __pyx_t_5);
3395 __Pyx_GIVEREF(__pyx_t_6);
3396 PyTuple_SET_ITEM(__pyx_t_9, 5, __pyx_t_6);
3397 __Pyx_GIVEREF(__pyx_t_7);
3398 PyTuple_SET_ITEM(__pyx_t_9, 6, __pyx_t_7);
3399 __Pyx_GIVEREF(__pyx_t_8);
3400 PyTuple_SET_ITEM(__pyx_t_9, 7, __pyx_t_8);
3401 __pyx_t_1 = 0;
3402 __pyx_t_2 = 0;
3403 __pyx_t_3 = 0;
3404 __pyx_t_4 = 0;
3405 __pyx_t_5 = 0;
3406 __pyx_t_6 = 0;
3407 __pyx_t_7 = 0;
3408 __pyx_t_8 = 0;
3409 __pyx_v_state = ((PyObject*)__pyx_t_9);
3410 __pyx_t_9 = 0;
3411
3412 /* "(tree fragment)":6
3413 * cdef bint use_setstate
3414 * state = (self.chrom_id, self.end, self.max_val, self.min_val, self.start, self.sum_data, self.sum_squares, self.valid_count)
3415 * _dict = getattr(self, '__dict__', None) # <<<<<<<<<<<<<<
3416 * if _dict is not None:
3417 * state += (_dict,)
3418 */
3419 __pyx_t_9 = __Pyx_GetAttr3(((PyObject *)__pyx_v_self), __pyx_n_s_dict, Py_None); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 6, __pyx_L1_error)
3420 __Pyx_GOTREF(__pyx_t_9);
3421 __pyx_v__dict = __pyx_t_9;
3422 __pyx_t_9 = 0;
3423
3424 /* "(tree fragment)":7
3425 * state = (self.chrom_id, self.end, self.max_val, self.min_val, self.start, self.sum_data, self.sum_squares, self.valid_count)
3426 * _dict = getattr(self, '__dict__', None)
3427 * if _dict is not None: # <<<<<<<<<<<<<<
3428 * state += (_dict,)
3429 * use_setstate = True
3430 */
3431 __pyx_t_10 = (__pyx_v__dict != Py_None);
3432 __pyx_t_11 = (__pyx_t_10 != 0);
3433 if (__pyx_t_11) {
3434
3435 /* "(tree fragment)":8
3436 * _dict = getattr(self, '__dict__', None)
3437 * if _dict is not None:
3438 * state += (_dict,) # <<<<<<<<<<<<<<
3439 * use_setstate = True
3440 * else:
3441 */
3442 __pyx_t_9 = PyTuple_New(1); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 8, __pyx_L1_error)
3443 __Pyx_GOTREF(__pyx_t_9);
3444 __Pyx_INCREF(__pyx_v__dict);
3445 __Pyx_GIVEREF(__pyx_v__dict);
3446 PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_v__dict);
3447 __pyx_t_8 = PyNumber_InPlaceAdd(__pyx_v_state, __pyx_t_9); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 8, __pyx_L1_error)
3448 __Pyx_GOTREF(__pyx_t_8);
3449 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
3450 __Pyx_DECREF_SET(__pyx_v_state, ((PyObject*)__pyx_t_8));
3451 __pyx_t_8 = 0;
3452
3453 /* "(tree fragment)":9
3454 * if _dict is not None:
3455 * state += (_dict,)
3456 * use_setstate = True # <<<<<<<<<<<<<<
3457 * else:
3458 * use_setstate = False
3459 */
3460 __pyx_v_use_setstate = 1;
3461
3462 /* "(tree fragment)":7
3463 * state = (self.chrom_id, self.end, self.max_val, self.min_val, self.start, self.sum_data, self.sum_squares, self.valid_count)
3464 * _dict = getattr(self, '__dict__', None)
3465 * if _dict is not None: # <<<<<<<<<<<<<<
3466 * state += (_dict,)
3467 * use_setstate = True
3468 */
3469 goto __pyx_L3;
3470 }
3471
3472 /* "(tree fragment)":11
3473 * use_setstate = True
3474 * else:
3475 * use_setstate = False # <<<<<<<<<<<<<<
3476 * if use_setstate:
3477 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, None), state
3478 */
3479 /*else*/ {
3480 __pyx_v_use_setstate = 0;
3481 }
3482 __pyx_L3:;
3483
3484 /* "(tree fragment)":12
3485 * else:
3486 * use_setstate = False
3487 * if use_setstate: # <<<<<<<<<<<<<<
3488 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, None), state
3489 * else:
3490 */
3491 __pyx_t_11 = (__pyx_v_use_setstate != 0);
3492 if (__pyx_t_11) {
3493
3494 /* "(tree fragment)":13
3495 * use_setstate = False
3496 * if use_setstate:
3497 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, None), state # <<<<<<<<<<<<<<
3498 * else:
3499 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, state)
3500 */
3501 __Pyx_XDECREF(__pyx_r);
3502 __Pyx_GetModuleGlobalName(__pyx_t_8, __pyx_n_s_pyx_unpickle_SummaryBlock); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 13, __pyx_L1_error)
3503 __Pyx_GOTREF(__pyx_t_8);
3504 __pyx_t_9 = PyTuple_New(3); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 13, __pyx_L1_error)
3505 __Pyx_GOTREF(__pyx_t_9);
3506 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
3507 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
3508 PyTuple_SET_ITEM(__pyx_t_9, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
3509 __Pyx_INCREF(__pyx_int_120770442);
3510 __Pyx_GIVEREF(__pyx_int_120770442);
3511 PyTuple_SET_ITEM(__pyx_t_9, 1, __pyx_int_120770442);
3512 __Pyx_INCREF(Py_None);
3513 __Pyx_GIVEREF(Py_None);
3514 PyTuple_SET_ITEM(__pyx_t_9, 2, Py_None);
3515 __pyx_t_7 = PyTuple_New(3); if (unlikely(!__pyx_t_7)) __PYX_ERR(2, 13, __pyx_L1_error)
3516 __Pyx_GOTREF(__pyx_t_7);
3517 __Pyx_GIVEREF(__pyx_t_8);
3518 PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_8);
3519 __Pyx_GIVEREF(__pyx_t_9);
3520 PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_9);
3521 __Pyx_INCREF(__pyx_v_state);
3522 __Pyx_GIVEREF(__pyx_v_state);
3523 PyTuple_SET_ITEM(__pyx_t_7, 2, __pyx_v_state);
3524 __pyx_t_8 = 0;
3525 __pyx_t_9 = 0;
3526 __pyx_r = __pyx_t_7;
3527 __pyx_t_7 = 0;
3528 goto __pyx_L0;
3529
3530 /* "(tree fragment)":12
3531 * else:
3532 * use_setstate = False
3533 * if use_setstate: # <<<<<<<<<<<<<<
3534 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, None), state
3535 * else:
3536 */
3537 }
3538
3539 /* "(tree fragment)":15
3540 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, None), state
3541 * else:
3542 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, state) # <<<<<<<<<<<<<<
3543 * def __setstate_cython__(self, __pyx_state):
3544 * __pyx_unpickle_SummaryBlock__set_state(self, __pyx_state)
3545 */
3546 /*else*/ {
3547 __Pyx_XDECREF(__pyx_r);
3548 __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_n_s_pyx_unpickle_SummaryBlock); if (unlikely(!__pyx_t_7)) __PYX_ERR(2, 15, __pyx_L1_error)
3549 __Pyx_GOTREF(__pyx_t_7);
3550 __pyx_t_9 = PyTuple_New(3); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 15, __pyx_L1_error)
3551 __Pyx_GOTREF(__pyx_t_9);
3552 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
3553 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
3554 PyTuple_SET_ITEM(__pyx_t_9, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
3555 __Pyx_INCREF(__pyx_int_120770442);
3556 __Pyx_GIVEREF(__pyx_int_120770442);
3557 PyTuple_SET_ITEM(__pyx_t_9, 1, __pyx_int_120770442);
3558 __Pyx_INCREF(__pyx_v_state);
3559 __Pyx_GIVEREF(__pyx_v_state);
3560 PyTuple_SET_ITEM(__pyx_t_9, 2, __pyx_v_state);
3561 __pyx_t_8 = PyTuple_New(2); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 15, __pyx_L1_error)
3562 __Pyx_GOTREF(__pyx_t_8);
3563 __Pyx_GIVEREF(__pyx_t_7);
3564 PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_7);
3565 __Pyx_GIVEREF(__pyx_t_9);
3566 PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_t_9);
3567 __pyx_t_7 = 0;
3568 __pyx_t_9 = 0;
3569 __pyx_r = __pyx_t_8;
3570 __pyx_t_8 = 0;
3571 goto __pyx_L0;
3572 }
3573
3574 /* "(tree fragment)":1
3575 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
3576 * cdef tuple state
3577 * cdef object _dict
3578 */
3579
3580 /* function exit code */
3581 __pyx_L1_error:;
3582 __Pyx_XDECREF(__pyx_t_1);
3583 __Pyx_XDECREF(__pyx_t_2);
3584 __Pyx_XDECREF(__pyx_t_3);
3585 __Pyx_XDECREF(__pyx_t_4);
3586 __Pyx_XDECREF(__pyx_t_5);
3587 __Pyx_XDECREF(__pyx_t_6);
3588 __Pyx_XDECREF(__pyx_t_7);
3589 __Pyx_XDECREF(__pyx_t_8);
3590 __Pyx_XDECREF(__pyx_t_9);
3591 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3592 __pyx_r = NULL;
3593 __pyx_L0:;
3594 __Pyx_XDECREF(__pyx_v_state);
3595 __Pyx_XDECREF(__pyx_v__dict);
3596 __Pyx_XGIVEREF(__pyx_r);
3597 __Pyx_RefNannyFinishContext();
3598 return __pyx_r;
3599 }
3600
3601 /* "(tree fragment)":16
3602 * else:
3603 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, state)
3604 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
3605 * __pyx_unpickle_SummaryBlock__set_state(self, __pyx_state)
3606 */
3607
3608 /* Python wrapper */
3609 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3__setstate_cython__(PyObject * __pyx_v_self,PyObject * __pyx_v___pyx_state)3610 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
3611 PyObject *__pyx_r = 0;
3612 __Pyx_RefNannyDeclarations
3613 __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
3614 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_2__setstate_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));
3615
3616 /* function exit code */
3617 __Pyx_RefNannyFinishContext();
3618 return __pyx_r;
3619 }
3620
__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_2__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v_self,PyObject * __pyx_v___pyx_state)3621 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12SummaryBlock_2__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
3622 PyObject *__pyx_r = NULL;
3623 __Pyx_RefNannyDeclarations
3624 PyObject *__pyx_t_1 = NULL;
3625 int __pyx_lineno = 0;
3626 const char *__pyx_filename = NULL;
3627 int __pyx_clineno = 0;
3628 __Pyx_RefNannySetupContext("__setstate_cython__", 0);
3629
3630 /* "(tree fragment)":17
3631 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, state)
3632 * def __setstate_cython__(self, __pyx_state):
3633 * __pyx_unpickle_SummaryBlock__set_state(self, __pyx_state) # <<<<<<<<<<<<<<
3634 */
3635 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 17, __pyx_L1_error)
3636 __pyx_t_1 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummaryBlock__set_state(__pyx_v_self, ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 17, __pyx_L1_error)
3637 __Pyx_GOTREF(__pyx_t_1);
3638 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
3639
3640 /* "(tree fragment)":16
3641 * else:
3642 * return __pyx_unpickle_SummaryBlock, (type(self), 0x732cf8a, state)
3643 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
3644 * __pyx_unpickle_SummaryBlock__set_state(self, __pyx_state)
3645 */
3646
3647 /* function exit code */
3648 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
3649 goto __pyx_L0;
3650 __pyx_L1_error:;
3651 __Pyx_XDECREF(__pyx_t_1);
3652 __Pyx_AddTraceback("bx.bbi.bbi_file.SummaryBlock.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3653 __pyx_r = NULL;
3654 __pyx_L0:;
3655 __Pyx_XGIVEREF(__pyx_r);
3656 __Pyx_RefNannyFinishContext();
3657 return __pyx_r;
3658 }
3659
3660 /* "bx/bbi/bbi_file.pyx":67
3661 * aggregation over a particular range and resolution
3662 * """
3663 * def __init__( self, bits32 start, bits32 end, int size ): # <<<<<<<<<<<<<<
3664 * self.start = start
3665 * self.end = end
3666 */
3667
3668 /* Python wrapper */
3669 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_1__init__(PyObject * __pyx_v_self,PyObject * __pyx_args,PyObject * __pyx_kwds)3670 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
3671 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start;
3672 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end;
3673 int __pyx_v_size;
3674 int __pyx_lineno = 0;
3675 const char *__pyx_filename = NULL;
3676 int __pyx_clineno = 0;
3677 int __pyx_r;
3678 __Pyx_RefNannyDeclarations
3679 __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
3680 {
3681 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_start,&__pyx_n_s_end,&__pyx_n_s_size,0};
3682 PyObject* values[3] = {0,0,0};
3683 if (unlikely(__pyx_kwds)) {
3684 Py_ssize_t kw_args;
3685 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
3686 switch (pos_args) {
3687 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
3688 CYTHON_FALLTHROUGH;
3689 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
3690 CYTHON_FALLTHROUGH;
3691 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
3692 CYTHON_FALLTHROUGH;
3693 case 0: break;
3694 default: goto __pyx_L5_argtuple_error;
3695 }
3696 kw_args = PyDict_Size(__pyx_kwds);
3697 switch (pos_args) {
3698 case 0:
3699 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_start)) != 0)) kw_args--;
3700 else goto __pyx_L5_argtuple_error;
3701 CYTHON_FALLTHROUGH;
3702 case 1:
3703 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_end)) != 0)) kw_args--;
3704 else {
3705 __Pyx_RaiseArgtupleInvalid("__init__", 1, 3, 3, 1); __PYX_ERR(0, 67, __pyx_L3_error)
3706 }
3707 CYTHON_FALLTHROUGH;
3708 case 2:
3709 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_size)) != 0)) kw_args--;
3710 else {
3711 __Pyx_RaiseArgtupleInvalid("__init__", 1, 3, 3, 2); __PYX_ERR(0, 67, __pyx_L3_error)
3712 }
3713 }
3714 if (unlikely(kw_args > 0)) {
3715 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(0, 67, __pyx_L3_error)
3716 }
3717 } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
3718 goto __pyx_L5_argtuple_error;
3719 } else {
3720 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
3721 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
3722 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
3723 }
3724 __pyx_v_start = __Pyx_PyInt_As_unsigned_int(values[0]); if (unlikely((__pyx_v_start == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 67, __pyx_L3_error)
3725 __pyx_v_end = __Pyx_PyInt_As_unsigned_int(values[1]); if (unlikely((__pyx_v_end == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 67, __pyx_L3_error)
3726 __pyx_v_size = __Pyx_PyInt_As_int(values[2]); if (unlikely((__pyx_v_size == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 67, __pyx_L3_error)
3727 }
3728 goto __pyx_L4_argument_unpacking_done;
3729 __pyx_L5_argtuple_error:;
3730 __Pyx_RaiseArgtupleInvalid("__init__", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 67, __pyx_L3_error)
3731 __pyx_L3_error:;
3732 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
3733 __Pyx_RefNannyFinishContext();
3734 return -1;
3735 __pyx_L4_argument_unpacking_done:;
3736 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData___init__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), __pyx_v_start, __pyx_v_end, __pyx_v_size);
3737
3738 /* function exit code */
3739 __Pyx_RefNannyFinishContext();
3740 return __pyx_r;
3741 }
3742
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData___init__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,int __pyx_v_size)3743 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData___init__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_size) {
3744 int __pyx_r;
3745 __Pyx_RefNannyDeclarations
3746 PyObject *__pyx_t_1 = NULL;
3747 PyObject *__pyx_t_2 = NULL;
3748 PyObject *__pyx_t_3 = NULL;
3749 PyObject *__pyx_t_4 = NULL;
3750 PyObject *__pyx_t_5 = NULL;
3751 int __pyx_lineno = 0;
3752 const char *__pyx_filename = NULL;
3753 int __pyx_clineno = 0;
3754 __Pyx_RefNannySetupContext("__init__", 0);
3755
3756 /* "bx/bbi/bbi_file.pyx":68
3757 * """
3758 * def __init__( self, bits32 start, bits32 end, int size ):
3759 * self.start = start # <<<<<<<<<<<<<<
3760 * self.end = end
3761 * self.size = size
3762 */
3763 __pyx_v_self->start = __pyx_v_start;
3764
3765 /* "bx/bbi/bbi_file.pyx":69
3766 * def __init__( self, bits32 start, bits32 end, int size ):
3767 * self.start = start
3768 * self.end = end # <<<<<<<<<<<<<<
3769 * self.size = size
3770 * self.valid_count = numpy.zeros( self.size, dtype=numpy.float64 )
3771 */
3772 __pyx_v_self->end = __pyx_v_end;
3773
3774 /* "bx/bbi/bbi_file.pyx":70
3775 * self.start = start
3776 * self.end = end
3777 * self.size = size # <<<<<<<<<<<<<<
3778 * self.valid_count = numpy.zeros( self.size, dtype=numpy.float64 )
3779 * self.min_val = numpy.zeros( self.size, dtype=numpy.float64 )
3780 */
3781 __pyx_v_self->size = __pyx_v_size;
3782
3783 /* "bx/bbi/bbi_file.pyx":71
3784 * self.end = end
3785 * self.size = size
3786 * self.valid_count = numpy.zeros( self.size, dtype=numpy.float64 ) # <<<<<<<<<<<<<<
3787 * self.min_val = numpy.zeros( self.size, dtype=numpy.float64 )
3788 * self.max_val = numpy.zeros( self.size, dtype=numpy.float64 )
3789 */
3790 __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_numpy); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 71, __pyx_L1_error)
3791 __Pyx_GOTREF(__pyx_t_1);
3792 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_zeros); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 71, __pyx_L1_error)
3793 __Pyx_GOTREF(__pyx_t_2);
3794 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
3795 __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_self->size); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 71, __pyx_L1_error)
3796 __Pyx_GOTREF(__pyx_t_1);
3797 __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 71, __pyx_L1_error)
3798 __Pyx_GOTREF(__pyx_t_3);
3799 __Pyx_GIVEREF(__pyx_t_1);
3800 PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_1);
3801 __pyx_t_1 = 0;
3802 __pyx_t_1 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 71, __pyx_L1_error)
3803 __Pyx_GOTREF(__pyx_t_1);
3804 __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_numpy); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 71, __pyx_L1_error)
3805 __Pyx_GOTREF(__pyx_t_4);
3806 __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_float64); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 71, __pyx_L1_error)
3807 __Pyx_GOTREF(__pyx_t_5);
3808 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
3809 if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_dtype, __pyx_t_5) < 0) __PYX_ERR(0, 71, __pyx_L1_error)
3810 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
3811 __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_3, __pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 71, __pyx_L1_error)
3812 __Pyx_GOTREF(__pyx_t_5);
3813 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
3814 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
3815 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
3816 if (!(likely(((__pyx_t_5) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_5, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 71, __pyx_L1_error)
3817 __Pyx_GIVEREF(__pyx_t_5);
3818 __Pyx_GOTREF(__pyx_v_self->valid_count);
3819 __Pyx_DECREF(((PyObject *)__pyx_v_self->valid_count));
3820 __pyx_v_self->valid_count = ((PyArrayObject *)__pyx_t_5);
3821 __pyx_t_5 = 0;
3822
3823 /* "bx/bbi/bbi_file.pyx":72
3824 * self.size = size
3825 * self.valid_count = numpy.zeros( self.size, dtype=numpy.float64 )
3826 * self.min_val = numpy.zeros( self.size, dtype=numpy.float64 ) # <<<<<<<<<<<<<<
3827 * self.max_val = numpy.zeros( self.size, dtype=numpy.float64 )
3828 * self.sum_data = numpy.zeros( self.size, dtype=numpy.float64 )
3829 */
3830 __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_numpy); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 72, __pyx_L1_error)
3831 __Pyx_GOTREF(__pyx_t_5);
3832 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_zeros); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 72, __pyx_L1_error)
3833 __Pyx_GOTREF(__pyx_t_1);
3834 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
3835 __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_self->size); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 72, __pyx_L1_error)
3836 __Pyx_GOTREF(__pyx_t_5);
3837 __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 72, __pyx_L1_error)
3838 __Pyx_GOTREF(__pyx_t_3);
3839 __Pyx_GIVEREF(__pyx_t_5);
3840 PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_5);
3841 __pyx_t_5 = 0;
3842 __pyx_t_5 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 72, __pyx_L1_error)
3843 __Pyx_GOTREF(__pyx_t_5);
3844 __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_numpy); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 72, __pyx_L1_error)
3845 __Pyx_GOTREF(__pyx_t_2);
3846 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_float64); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 72, __pyx_L1_error)
3847 __Pyx_GOTREF(__pyx_t_4);
3848 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
3849 if (PyDict_SetItem(__pyx_t_5, __pyx_n_s_dtype, __pyx_t_4) < 0) __PYX_ERR(0, 72, __pyx_L1_error)
3850 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
3851 __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_1, __pyx_t_3, __pyx_t_5); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 72, __pyx_L1_error)
3852 __Pyx_GOTREF(__pyx_t_4);
3853 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
3854 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
3855 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
3856 if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 72, __pyx_L1_error)
3857 __Pyx_GIVEREF(__pyx_t_4);
3858 __Pyx_GOTREF(__pyx_v_self->min_val);
3859 __Pyx_DECREF(((PyObject *)__pyx_v_self->min_val));
3860 __pyx_v_self->min_val = ((PyArrayObject *)__pyx_t_4);
3861 __pyx_t_4 = 0;
3862
3863 /* "bx/bbi/bbi_file.pyx":73
3864 * self.valid_count = numpy.zeros( self.size, dtype=numpy.float64 )
3865 * self.min_val = numpy.zeros( self.size, dtype=numpy.float64 )
3866 * self.max_val = numpy.zeros( self.size, dtype=numpy.float64 ) # <<<<<<<<<<<<<<
3867 * self.sum_data = numpy.zeros( self.size, dtype=numpy.float64 )
3868 * self.sum_squares = numpy.zeros( self.size, dtype=numpy.float64 )
3869 */
3870 __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_numpy); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 73, __pyx_L1_error)
3871 __Pyx_GOTREF(__pyx_t_4);
3872 __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_zeros); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 73, __pyx_L1_error)
3873 __Pyx_GOTREF(__pyx_t_5);
3874 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
3875 __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_self->size); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 73, __pyx_L1_error)
3876 __Pyx_GOTREF(__pyx_t_4);
3877 __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 73, __pyx_L1_error)
3878 __Pyx_GOTREF(__pyx_t_3);
3879 __Pyx_GIVEREF(__pyx_t_4);
3880 PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_4);
3881 __pyx_t_4 = 0;
3882 __pyx_t_4 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 73, __pyx_L1_error)
3883 __Pyx_GOTREF(__pyx_t_4);
3884 __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_numpy); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 73, __pyx_L1_error)
3885 __Pyx_GOTREF(__pyx_t_1);
3886 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_float64); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 73, __pyx_L1_error)
3887 __Pyx_GOTREF(__pyx_t_2);
3888 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
3889 if (PyDict_SetItem(__pyx_t_4, __pyx_n_s_dtype, __pyx_t_2) < 0) __PYX_ERR(0, 73, __pyx_L1_error)
3890 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
3891 __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_3, __pyx_t_4); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 73, __pyx_L1_error)
3892 __Pyx_GOTREF(__pyx_t_2);
3893 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
3894 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
3895 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
3896 if (!(likely(((__pyx_t_2) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_2, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 73, __pyx_L1_error)
3897 __Pyx_GIVEREF(__pyx_t_2);
3898 __Pyx_GOTREF(__pyx_v_self->max_val);
3899 __Pyx_DECREF(((PyObject *)__pyx_v_self->max_val));
3900 __pyx_v_self->max_val = ((PyArrayObject *)__pyx_t_2);
3901 __pyx_t_2 = 0;
3902
3903 /* "bx/bbi/bbi_file.pyx":74
3904 * self.min_val = numpy.zeros( self.size, dtype=numpy.float64 )
3905 * self.max_val = numpy.zeros( self.size, dtype=numpy.float64 )
3906 * self.sum_data = numpy.zeros( self.size, dtype=numpy.float64 ) # <<<<<<<<<<<<<<
3907 * self.sum_squares = numpy.zeros( self.size, dtype=numpy.float64 )
3908 * cdef accumulate_interval_value( self, bits32 s, bits32 e, float val ):
3909 */
3910 __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_numpy); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 74, __pyx_L1_error)
3911 __Pyx_GOTREF(__pyx_t_2);
3912 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_zeros); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 74, __pyx_L1_error)
3913 __Pyx_GOTREF(__pyx_t_4);
3914 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
3915 __pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_self->size); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 74, __pyx_L1_error)
3916 __Pyx_GOTREF(__pyx_t_2);
3917 __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 74, __pyx_L1_error)
3918 __Pyx_GOTREF(__pyx_t_3);
3919 __Pyx_GIVEREF(__pyx_t_2);
3920 PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_2);
3921 __pyx_t_2 = 0;
3922 __pyx_t_2 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 74, __pyx_L1_error)
3923 __Pyx_GOTREF(__pyx_t_2);
3924 __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_numpy); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 74, __pyx_L1_error)
3925 __Pyx_GOTREF(__pyx_t_5);
3926 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_float64); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 74, __pyx_L1_error)
3927 __Pyx_GOTREF(__pyx_t_1);
3928 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
3929 if (PyDict_SetItem(__pyx_t_2, __pyx_n_s_dtype, __pyx_t_1) < 0) __PYX_ERR(0, 74, __pyx_L1_error)
3930 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
3931 __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_3, __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 74, __pyx_L1_error)
3932 __Pyx_GOTREF(__pyx_t_1);
3933 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
3934 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
3935 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
3936 if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 74, __pyx_L1_error)
3937 __Pyx_GIVEREF(__pyx_t_1);
3938 __Pyx_GOTREF(__pyx_v_self->sum_data);
3939 __Pyx_DECREF(((PyObject *)__pyx_v_self->sum_data));
3940 __pyx_v_self->sum_data = ((PyArrayObject *)__pyx_t_1);
3941 __pyx_t_1 = 0;
3942
3943 /* "bx/bbi/bbi_file.pyx":75
3944 * self.max_val = numpy.zeros( self.size, dtype=numpy.float64 )
3945 * self.sum_data = numpy.zeros( self.size, dtype=numpy.float64 )
3946 * self.sum_squares = numpy.zeros( self.size, dtype=numpy.float64 ) # <<<<<<<<<<<<<<
3947 * cdef accumulate_interval_value( self, bits32 s, bits32 e, float val ):
3948 * cdef int base_start, base_end, base_step, overlap, j, interval_size
3949 */
3950 __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_numpy); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 75, __pyx_L1_error)
3951 __Pyx_GOTREF(__pyx_t_1);
3952 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_zeros); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 75, __pyx_L1_error)
3953 __Pyx_GOTREF(__pyx_t_2);
3954 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
3955 __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_self->size); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 75, __pyx_L1_error)
3956 __Pyx_GOTREF(__pyx_t_1);
3957 __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 75, __pyx_L1_error)
3958 __Pyx_GOTREF(__pyx_t_3);
3959 __Pyx_GIVEREF(__pyx_t_1);
3960 PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_1);
3961 __pyx_t_1 = 0;
3962 __pyx_t_1 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 75, __pyx_L1_error)
3963 __Pyx_GOTREF(__pyx_t_1);
3964 __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_numpy); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 75, __pyx_L1_error)
3965 __Pyx_GOTREF(__pyx_t_4);
3966 __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_float64); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 75, __pyx_L1_error)
3967 __Pyx_GOTREF(__pyx_t_5);
3968 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
3969 if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_dtype, __pyx_t_5) < 0) __PYX_ERR(0, 75, __pyx_L1_error)
3970 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
3971 __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_3, __pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 75, __pyx_L1_error)
3972 __Pyx_GOTREF(__pyx_t_5);
3973 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
3974 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
3975 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
3976 if (!(likely(((__pyx_t_5) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_5, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 75, __pyx_L1_error)
3977 __Pyx_GIVEREF(__pyx_t_5);
3978 __Pyx_GOTREF(__pyx_v_self->sum_squares);
3979 __Pyx_DECREF(((PyObject *)__pyx_v_self->sum_squares));
3980 __pyx_v_self->sum_squares = ((PyArrayObject *)__pyx_t_5);
3981 __pyx_t_5 = 0;
3982
3983 /* "bx/bbi/bbi_file.pyx":67
3984 * aggregation over a particular range and resolution
3985 * """
3986 * def __init__( self, bits32 start, bits32 end, int size ): # <<<<<<<<<<<<<<
3987 * self.start = start
3988 * self.end = end
3989 */
3990
3991 /* function exit code */
3992 __pyx_r = 0;
3993 goto __pyx_L0;
3994 __pyx_L1_error:;
3995 __Pyx_XDECREF(__pyx_t_1);
3996 __Pyx_XDECREF(__pyx_t_2);
3997 __Pyx_XDECREF(__pyx_t_3);
3998 __Pyx_XDECREF(__pyx_t_4);
3999 __Pyx_XDECREF(__pyx_t_5);
4000 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
4001 __pyx_r = -1;
4002 __pyx_L0:;
4003 __Pyx_RefNannyFinishContext();
4004 return __pyx_r;
4005 }
4006
4007 /* "bx/bbi/bbi_file.pyx":76
4008 * self.sum_data = numpy.zeros( self.size, dtype=numpy.float64 )
4009 * self.sum_squares = numpy.zeros( self.size, dtype=numpy.float64 )
4010 * cdef accumulate_interval_value( self, bits32 s, bits32 e, float val ): # <<<<<<<<<<<<<<
4011 * cdef int base_start, base_end, base_step, overlap, j, interval_size
4012 * cdef double overlap_factor, interval_weight
4013 */
4014
__pyx_f_2bx_3bbi_8bbi_file_14SummarizedData_accumulate_interval_value(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_s,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_e,float __pyx_v_val)4015 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_14SummarizedData_accumulate_interval_value(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_s, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_e, float __pyx_v_val) {
4016 int __pyx_v_base_start;
4017 int __pyx_v_base_end;
4018 int __pyx_v_base_step;
4019 int __pyx_v_overlap;
4020 int __pyx_v_j;
4021 int __pyx_v_interval_size;
4022 double __pyx_v_overlap_factor;
4023 double __pyx_v_interval_weight;
4024 PyArrayObject *__pyx_v_valid_count = 0;
4025 PyArrayObject *__pyx_v_min_val = 0;
4026 PyArrayObject *__pyx_v_max_val = 0;
4027 PyArrayObject *__pyx_v_sum_data = 0;
4028 PyArrayObject *__pyx_v_sum_squares = 0;
4029 __Pyx_LocalBuf_ND __pyx_pybuffernd_max_val;
4030 __Pyx_Buffer __pyx_pybuffer_max_val;
4031 __Pyx_LocalBuf_ND __pyx_pybuffernd_min_val;
4032 __Pyx_Buffer __pyx_pybuffer_min_val;
4033 __Pyx_LocalBuf_ND __pyx_pybuffernd_sum_data;
4034 __Pyx_Buffer __pyx_pybuffer_sum_data;
4035 __Pyx_LocalBuf_ND __pyx_pybuffernd_sum_squares;
4036 __Pyx_Buffer __pyx_pybuffer_sum_squares;
4037 __Pyx_LocalBuf_ND __pyx_pybuffernd_valid_count;
4038 __Pyx_Buffer __pyx_pybuffer_valid_count;
4039 PyObject *__pyx_r = NULL;
4040 __Pyx_RefNannyDeclarations
4041 PyObject *__pyx_t_1 = NULL;
4042 int __pyx_t_2;
4043 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_3;
4044 int __pyx_t_4;
4045 Py_ssize_t __pyx_t_5;
4046 int __pyx_t_6;
4047 int __pyx_lineno = 0;
4048 const char *__pyx_filename = NULL;
4049 int __pyx_clineno = 0;
4050 __Pyx_RefNannySetupContext("accumulate_interval_value", 0);
4051 __pyx_pybuffer_valid_count.pybuffer.buf = NULL;
4052 __pyx_pybuffer_valid_count.refcount = 0;
4053 __pyx_pybuffernd_valid_count.data = NULL;
4054 __pyx_pybuffernd_valid_count.rcbuffer = &__pyx_pybuffer_valid_count;
4055 __pyx_pybuffer_min_val.pybuffer.buf = NULL;
4056 __pyx_pybuffer_min_val.refcount = 0;
4057 __pyx_pybuffernd_min_val.data = NULL;
4058 __pyx_pybuffernd_min_val.rcbuffer = &__pyx_pybuffer_min_val;
4059 __pyx_pybuffer_max_val.pybuffer.buf = NULL;
4060 __pyx_pybuffer_max_val.refcount = 0;
4061 __pyx_pybuffernd_max_val.data = NULL;
4062 __pyx_pybuffernd_max_val.rcbuffer = &__pyx_pybuffer_max_val;
4063 __pyx_pybuffer_sum_data.pybuffer.buf = NULL;
4064 __pyx_pybuffer_sum_data.refcount = 0;
4065 __pyx_pybuffernd_sum_data.data = NULL;
4066 __pyx_pybuffernd_sum_data.rcbuffer = &__pyx_pybuffer_sum_data;
4067 __pyx_pybuffer_sum_squares.pybuffer.buf = NULL;
4068 __pyx_pybuffer_sum_squares.refcount = 0;
4069 __pyx_pybuffernd_sum_squares.data = NULL;
4070 __pyx_pybuffernd_sum_squares.rcbuffer = &__pyx_pybuffer_sum_squares;
4071
4072 /* "bx/bbi/bbi_file.pyx":80
4073 * cdef double overlap_factor, interval_weight
4074 * # We locally cdef the arrays so all indexing will be at C speeds
4075 * cdef numpy.ndarray[numpy.float64_t, ndim=1] valid_count = self.valid_count # <<<<<<<<<<<<<<
4076 * cdef numpy.ndarray[numpy.float64_t, ndim=1] min_val = self.min_val
4077 * cdef numpy.ndarray[numpy.float64_t, ndim=1] max_val = self.max_val
4078 */
4079 __pyx_t_1 = ((PyObject *)__pyx_v_self->valid_count);
4080 __Pyx_INCREF(__pyx_t_1);
4081 {
4082 __Pyx_BufFmt_StackElem __pyx_stack[1];
4083 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_valid_count.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
4084 __pyx_v_valid_count = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_valid_count.rcbuffer->pybuffer.buf = NULL;
4085 __PYX_ERR(0, 80, __pyx_L1_error)
4086 } else {__pyx_pybuffernd_valid_count.diminfo[0].strides = __pyx_pybuffernd_valid_count.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_valid_count.diminfo[0].shape = __pyx_pybuffernd_valid_count.rcbuffer->pybuffer.shape[0];
4087 }
4088 }
4089 __pyx_v_valid_count = ((PyArrayObject *)__pyx_t_1);
4090 __pyx_t_1 = 0;
4091
4092 /* "bx/bbi/bbi_file.pyx":81
4093 * # We locally cdef the arrays so all indexing will be at C speeds
4094 * cdef numpy.ndarray[numpy.float64_t, ndim=1] valid_count = self.valid_count
4095 * cdef numpy.ndarray[numpy.float64_t, ndim=1] min_val = self.min_val # <<<<<<<<<<<<<<
4096 * cdef numpy.ndarray[numpy.float64_t, ndim=1] max_val = self.max_val
4097 * cdef numpy.ndarray[numpy.float64_t, ndim=1] sum_data = self.sum_data
4098 */
4099 __pyx_t_1 = ((PyObject *)__pyx_v_self->min_val);
4100 __Pyx_INCREF(__pyx_t_1);
4101 {
4102 __Pyx_BufFmt_StackElem __pyx_stack[1];
4103 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_min_val.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
4104 __pyx_v_min_val = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_min_val.rcbuffer->pybuffer.buf = NULL;
4105 __PYX_ERR(0, 81, __pyx_L1_error)
4106 } else {__pyx_pybuffernd_min_val.diminfo[0].strides = __pyx_pybuffernd_min_val.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_min_val.diminfo[0].shape = __pyx_pybuffernd_min_val.rcbuffer->pybuffer.shape[0];
4107 }
4108 }
4109 __pyx_v_min_val = ((PyArrayObject *)__pyx_t_1);
4110 __pyx_t_1 = 0;
4111
4112 /* "bx/bbi/bbi_file.pyx":82
4113 * cdef numpy.ndarray[numpy.float64_t, ndim=1] valid_count = self.valid_count
4114 * cdef numpy.ndarray[numpy.float64_t, ndim=1] min_val = self.min_val
4115 * cdef numpy.ndarray[numpy.float64_t, ndim=1] max_val = self.max_val # <<<<<<<<<<<<<<
4116 * cdef numpy.ndarray[numpy.float64_t, ndim=1] sum_data = self.sum_data
4117 * cdef numpy.ndarray[numpy.float64_t, ndim=1] sum_squares = self.sum_squares
4118 */
4119 __pyx_t_1 = ((PyObject *)__pyx_v_self->max_val);
4120 __Pyx_INCREF(__pyx_t_1);
4121 {
4122 __Pyx_BufFmt_StackElem __pyx_stack[1];
4123 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_max_val.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
4124 __pyx_v_max_val = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_max_val.rcbuffer->pybuffer.buf = NULL;
4125 __PYX_ERR(0, 82, __pyx_L1_error)
4126 } else {__pyx_pybuffernd_max_val.diminfo[0].strides = __pyx_pybuffernd_max_val.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_max_val.diminfo[0].shape = __pyx_pybuffernd_max_val.rcbuffer->pybuffer.shape[0];
4127 }
4128 }
4129 __pyx_v_max_val = ((PyArrayObject *)__pyx_t_1);
4130 __pyx_t_1 = 0;
4131
4132 /* "bx/bbi/bbi_file.pyx":83
4133 * cdef numpy.ndarray[numpy.float64_t, ndim=1] min_val = self.min_val
4134 * cdef numpy.ndarray[numpy.float64_t, ndim=1] max_val = self.max_val
4135 * cdef numpy.ndarray[numpy.float64_t, ndim=1] sum_data = self.sum_data # <<<<<<<<<<<<<<
4136 * cdef numpy.ndarray[numpy.float64_t, ndim=1] sum_squares = self.sum_squares
4137 * # Trim interval down to region of interest
4138 */
4139 __pyx_t_1 = ((PyObject *)__pyx_v_self->sum_data);
4140 __Pyx_INCREF(__pyx_t_1);
4141 {
4142 __Pyx_BufFmt_StackElem __pyx_stack[1];
4143 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_sum_data.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
4144 __pyx_v_sum_data = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_sum_data.rcbuffer->pybuffer.buf = NULL;
4145 __PYX_ERR(0, 83, __pyx_L1_error)
4146 } else {__pyx_pybuffernd_sum_data.diminfo[0].strides = __pyx_pybuffernd_sum_data.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_sum_data.diminfo[0].shape = __pyx_pybuffernd_sum_data.rcbuffer->pybuffer.shape[0];
4147 }
4148 }
4149 __pyx_v_sum_data = ((PyArrayObject *)__pyx_t_1);
4150 __pyx_t_1 = 0;
4151
4152 /* "bx/bbi/bbi_file.pyx":84
4153 * cdef numpy.ndarray[numpy.float64_t, ndim=1] max_val = self.max_val
4154 * cdef numpy.ndarray[numpy.float64_t, ndim=1] sum_data = self.sum_data
4155 * cdef numpy.ndarray[numpy.float64_t, ndim=1] sum_squares = self.sum_squares # <<<<<<<<<<<<<<
4156 * # Trim interval down to region of interest
4157 * if s < self.start:
4158 */
4159 __pyx_t_1 = ((PyObject *)__pyx_v_self->sum_squares);
4160 __Pyx_INCREF(__pyx_t_1);
4161 {
4162 __Pyx_BufFmt_StackElem __pyx_stack[1];
4163 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_sum_squares.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
4164 __pyx_v_sum_squares = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_sum_squares.rcbuffer->pybuffer.buf = NULL;
4165 __PYX_ERR(0, 84, __pyx_L1_error)
4166 } else {__pyx_pybuffernd_sum_squares.diminfo[0].strides = __pyx_pybuffernd_sum_squares.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_sum_squares.diminfo[0].shape = __pyx_pybuffernd_sum_squares.rcbuffer->pybuffer.shape[0];
4167 }
4168 }
4169 __pyx_v_sum_squares = ((PyArrayObject *)__pyx_t_1);
4170 __pyx_t_1 = 0;
4171
4172 /* "bx/bbi/bbi_file.pyx":86
4173 * cdef numpy.ndarray[numpy.float64_t, ndim=1] sum_squares = self.sum_squares
4174 * # Trim interval down to region of interest
4175 * if s < self.start: # <<<<<<<<<<<<<<
4176 * s = self.start
4177 * if e > self.end:
4178 */
4179 __pyx_t_2 = ((__pyx_v_s < __pyx_v_self->start) != 0);
4180 if (__pyx_t_2) {
4181
4182 /* "bx/bbi/bbi_file.pyx":87
4183 * # Trim interval down to region of interest
4184 * if s < self.start:
4185 * s = self.start # <<<<<<<<<<<<<<
4186 * if e > self.end:
4187 * e = self.end
4188 */
4189 __pyx_t_3 = __pyx_v_self->start;
4190 __pyx_v_s = __pyx_t_3;
4191
4192 /* "bx/bbi/bbi_file.pyx":86
4193 * cdef numpy.ndarray[numpy.float64_t, ndim=1] sum_squares = self.sum_squares
4194 * # Trim interval down to region of interest
4195 * if s < self.start: # <<<<<<<<<<<<<<
4196 * s = self.start
4197 * if e > self.end:
4198 */
4199 }
4200
4201 /* "bx/bbi/bbi_file.pyx":88
4202 * if s < self.start:
4203 * s = self.start
4204 * if e > self.end: # <<<<<<<<<<<<<<
4205 * e = self.end
4206 * if s >= e:
4207 */
4208 __pyx_t_2 = ((__pyx_v_e > __pyx_v_self->end) != 0);
4209 if (__pyx_t_2) {
4210
4211 /* "bx/bbi/bbi_file.pyx":89
4212 * s = self.start
4213 * if e > self.end:
4214 * e = self.end # <<<<<<<<<<<<<<
4215 * if s >= e:
4216 * return
4217 */
4218 __pyx_t_3 = __pyx_v_self->end;
4219 __pyx_v_e = __pyx_t_3;
4220
4221 /* "bx/bbi/bbi_file.pyx":88
4222 * if s < self.start:
4223 * s = self.start
4224 * if e > self.end: # <<<<<<<<<<<<<<
4225 * e = self.end
4226 * if s >= e:
4227 */
4228 }
4229
4230 /* "bx/bbi/bbi_file.pyx":90
4231 * if e > self.end:
4232 * e = self.end
4233 * if s >= e: # <<<<<<<<<<<<<<
4234 * return
4235 * base_step = ( self.end - self.start ) / self.size
4236 */
4237 __pyx_t_2 = ((__pyx_v_s >= __pyx_v_e) != 0);
4238 if (__pyx_t_2) {
4239
4240 /* "bx/bbi/bbi_file.pyx":91
4241 * e = self.end
4242 * if s >= e:
4243 * return # <<<<<<<<<<<<<<
4244 * base_step = ( self.end - self.start ) / self.size
4245 * for j from 0 <= j < self.size:
4246 */
4247 __Pyx_XDECREF(__pyx_r);
4248 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
4249 goto __pyx_L0;
4250
4251 /* "bx/bbi/bbi_file.pyx":90
4252 * if e > self.end:
4253 * e = self.end
4254 * if s >= e: # <<<<<<<<<<<<<<
4255 * return
4256 * base_step = ( self.end - self.start ) / self.size
4257 */
4258 }
4259
4260 /* "bx/bbi/bbi_file.pyx":92
4261 * if s >= e:
4262 * return
4263 * base_step = ( self.end - self.start ) / self.size # <<<<<<<<<<<<<<
4264 * for j from 0 <= j < self.size:
4265 * base_start = self.start + ( base_step * j )
4266 */
4267 __pyx_t_3 = (__pyx_v_self->end - __pyx_v_self->start);
4268 if (unlikely(__pyx_v_self->size == 0)) {
4269 PyErr_SetString(PyExc_ZeroDivisionError, "integer division or modulo by zero");
4270 __PYX_ERR(0, 92, __pyx_L1_error)
4271 }
4272 __pyx_v_base_step = (__pyx_t_3 / __pyx_v_self->size);
4273
4274 /* "bx/bbi/bbi_file.pyx":93
4275 * return
4276 * base_step = ( self.end - self.start ) / self.size
4277 * for j from 0 <= j < self.size: # <<<<<<<<<<<<<<
4278 * base_start = self.start + ( base_step * j )
4279 * base_end = base_start + base_step
4280 */
4281 __pyx_t_4 = __pyx_v_self->size;
4282 for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_4; __pyx_v_j++) {
4283
4284 /* "bx/bbi/bbi_file.pyx":94
4285 * base_step = ( self.end - self.start ) / self.size
4286 * for j from 0 <= j < self.size:
4287 * base_start = self.start + ( base_step * j ) # <<<<<<<<<<<<<<
4288 * base_end = base_start + base_step
4289 * overlap = range_intersection( base_start, base_end, s, e )
4290 */
4291 __pyx_v_base_start = (__pyx_v_self->start + (__pyx_v_base_step * __pyx_v_j));
4292
4293 /* "bx/bbi/bbi_file.pyx":95
4294 * for j from 0 <= j < self.size:
4295 * base_start = self.start + ( base_step * j )
4296 * base_end = base_start + base_step # <<<<<<<<<<<<<<
4297 * overlap = range_intersection( base_start, base_end, s, e )
4298 * if overlap > 0:
4299 */
4300 __pyx_v_base_end = (__pyx_v_base_start + __pyx_v_base_step);
4301
4302 /* "bx/bbi/bbi_file.pyx":96
4303 * base_start = self.start + ( base_step * j )
4304 * base_end = base_start + base_step
4305 * overlap = range_intersection( base_start, base_end, s, e ) # <<<<<<<<<<<<<<
4306 * if overlap > 0:
4307 * interval_size = e - s
4308 */
4309 __pyx_v_overlap = __pyx_f_2bx_3bbi_8bbi_file_range_intersection(__pyx_v_base_start, __pyx_v_base_end, __pyx_v_s, __pyx_v_e);
4310
4311 /* "bx/bbi/bbi_file.pyx":97
4312 * base_end = base_start + base_step
4313 * overlap = range_intersection( base_start, base_end, s, e )
4314 * if overlap > 0: # <<<<<<<<<<<<<<
4315 * interval_size = e - s
4316 * overlap_factor = <double> overlap / interval_size
4317 */
4318 __pyx_t_2 = ((__pyx_v_overlap > 0) != 0);
4319 if (__pyx_t_2) {
4320
4321 /* "bx/bbi/bbi_file.pyx":98
4322 * overlap = range_intersection( base_start, base_end, s, e )
4323 * if overlap > 0:
4324 * interval_size = e - s # <<<<<<<<<<<<<<
4325 * overlap_factor = <double> overlap / interval_size
4326 * interval_weight = interval_size * overlap_factor
4327 */
4328 __pyx_v_interval_size = (__pyx_v_e - __pyx_v_s);
4329
4330 /* "bx/bbi/bbi_file.pyx":99
4331 * if overlap > 0:
4332 * interval_size = e - s
4333 * overlap_factor = <double> overlap / interval_size # <<<<<<<<<<<<<<
4334 * interval_weight = interval_size * overlap_factor
4335 * valid_count[j] += interval_weight
4336 */
4337 if (unlikely(__pyx_v_interval_size == 0)) {
4338 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
4339 __PYX_ERR(0, 99, __pyx_L1_error)
4340 }
4341 __pyx_v_overlap_factor = (((double)__pyx_v_overlap) / __pyx_v_interval_size);
4342
4343 /* "bx/bbi/bbi_file.pyx":100
4344 * interval_size = e - s
4345 * overlap_factor = <double> overlap / interval_size
4346 * interval_weight = interval_size * overlap_factor # <<<<<<<<<<<<<<
4347 * valid_count[j] += interval_weight
4348 * sum_data[j] += val * interval_weight
4349 */
4350 __pyx_v_interval_weight = (__pyx_v_interval_size * __pyx_v_overlap_factor);
4351
4352 /* "bx/bbi/bbi_file.pyx":101
4353 * overlap_factor = <double> overlap / interval_size
4354 * interval_weight = interval_size * overlap_factor
4355 * valid_count[j] += interval_weight # <<<<<<<<<<<<<<
4356 * sum_data[j] += val * interval_weight
4357 * sum_squares[j] += val * val * interval_weight
4358 */
4359 __pyx_t_5 = __pyx_v_j;
4360 __pyx_t_6 = -1;
4361 if (__pyx_t_5 < 0) {
4362 __pyx_t_5 += __pyx_pybuffernd_valid_count.diminfo[0].shape;
4363 if (unlikely(__pyx_t_5 < 0)) __pyx_t_6 = 0;
4364 } else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_valid_count.diminfo[0].shape)) __pyx_t_6 = 0;
4365 if (unlikely(__pyx_t_6 != -1)) {
4366 __Pyx_RaiseBufferIndexError(__pyx_t_6);
4367 __PYX_ERR(0, 101, __pyx_L1_error)
4368 }
4369 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_valid_count.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_valid_count.diminfo[0].strides) += __pyx_v_interval_weight;
4370
4371 /* "bx/bbi/bbi_file.pyx":102
4372 * interval_weight = interval_size * overlap_factor
4373 * valid_count[j] += interval_weight
4374 * sum_data[j] += val * interval_weight # <<<<<<<<<<<<<<
4375 * sum_squares[j] += val * val * interval_weight
4376 * if max_val[j] < val:
4377 */
4378 __pyx_t_5 = __pyx_v_j;
4379 __pyx_t_6 = -1;
4380 if (__pyx_t_5 < 0) {
4381 __pyx_t_5 += __pyx_pybuffernd_sum_data.diminfo[0].shape;
4382 if (unlikely(__pyx_t_5 < 0)) __pyx_t_6 = 0;
4383 } else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_sum_data.diminfo[0].shape)) __pyx_t_6 = 0;
4384 if (unlikely(__pyx_t_6 != -1)) {
4385 __Pyx_RaiseBufferIndexError(__pyx_t_6);
4386 __PYX_ERR(0, 102, __pyx_L1_error)
4387 }
4388 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_sum_data.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_sum_data.diminfo[0].strides) += (__pyx_v_val * __pyx_v_interval_weight);
4389
4390 /* "bx/bbi/bbi_file.pyx":103
4391 * valid_count[j] += interval_weight
4392 * sum_data[j] += val * interval_weight
4393 * sum_squares[j] += val * val * interval_weight # <<<<<<<<<<<<<<
4394 * if max_val[j] < val:
4395 * max_val[j] = val
4396 */
4397 __pyx_t_5 = __pyx_v_j;
4398 __pyx_t_6 = -1;
4399 if (__pyx_t_5 < 0) {
4400 __pyx_t_5 += __pyx_pybuffernd_sum_squares.diminfo[0].shape;
4401 if (unlikely(__pyx_t_5 < 0)) __pyx_t_6 = 0;
4402 } else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_sum_squares.diminfo[0].shape)) __pyx_t_6 = 0;
4403 if (unlikely(__pyx_t_6 != -1)) {
4404 __Pyx_RaiseBufferIndexError(__pyx_t_6);
4405 __PYX_ERR(0, 103, __pyx_L1_error)
4406 }
4407 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_sum_squares.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_sum_squares.diminfo[0].strides) += ((__pyx_v_val * __pyx_v_val) * __pyx_v_interval_weight);
4408
4409 /* "bx/bbi/bbi_file.pyx":104
4410 * sum_data[j] += val * interval_weight
4411 * sum_squares[j] += val * val * interval_weight
4412 * if max_val[j] < val: # <<<<<<<<<<<<<<
4413 * max_val[j] = val
4414 * if min_val[j] > val:
4415 */
4416 __pyx_t_5 = __pyx_v_j;
4417 __pyx_t_6 = -1;
4418 if (__pyx_t_5 < 0) {
4419 __pyx_t_5 += __pyx_pybuffernd_max_val.diminfo[0].shape;
4420 if (unlikely(__pyx_t_5 < 0)) __pyx_t_6 = 0;
4421 } else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_max_val.diminfo[0].shape)) __pyx_t_6 = 0;
4422 if (unlikely(__pyx_t_6 != -1)) {
4423 __Pyx_RaiseBufferIndexError(__pyx_t_6);
4424 __PYX_ERR(0, 104, __pyx_L1_error)
4425 }
4426 __pyx_t_2 = (((*__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_max_val.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_max_val.diminfo[0].strides)) < __pyx_v_val) != 0);
4427 if (__pyx_t_2) {
4428
4429 /* "bx/bbi/bbi_file.pyx":105
4430 * sum_squares[j] += val * val * interval_weight
4431 * if max_val[j] < val:
4432 * max_val[j] = val # <<<<<<<<<<<<<<
4433 * if min_val[j] > val:
4434 * min_val[j] = val
4435 */
4436 __pyx_t_5 = __pyx_v_j;
4437 __pyx_t_6 = -1;
4438 if (__pyx_t_5 < 0) {
4439 __pyx_t_5 += __pyx_pybuffernd_max_val.diminfo[0].shape;
4440 if (unlikely(__pyx_t_5 < 0)) __pyx_t_6 = 0;
4441 } else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_max_val.diminfo[0].shape)) __pyx_t_6 = 0;
4442 if (unlikely(__pyx_t_6 != -1)) {
4443 __Pyx_RaiseBufferIndexError(__pyx_t_6);
4444 __PYX_ERR(0, 105, __pyx_L1_error)
4445 }
4446 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_max_val.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_max_val.diminfo[0].strides) = __pyx_v_val;
4447
4448 /* "bx/bbi/bbi_file.pyx":104
4449 * sum_data[j] += val * interval_weight
4450 * sum_squares[j] += val * val * interval_weight
4451 * if max_val[j] < val: # <<<<<<<<<<<<<<
4452 * max_val[j] = val
4453 * if min_val[j] > val:
4454 */
4455 }
4456
4457 /* "bx/bbi/bbi_file.pyx":106
4458 * if max_val[j] < val:
4459 * max_val[j] = val
4460 * if min_val[j] > val: # <<<<<<<<<<<<<<
4461 * min_val[j] = val
4462 *
4463 */
4464 __pyx_t_5 = __pyx_v_j;
4465 __pyx_t_6 = -1;
4466 if (__pyx_t_5 < 0) {
4467 __pyx_t_5 += __pyx_pybuffernd_min_val.diminfo[0].shape;
4468 if (unlikely(__pyx_t_5 < 0)) __pyx_t_6 = 0;
4469 } else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_min_val.diminfo[0].shape)) __pyx_t_6 = 0;
4470 if (unlikely(__pyx_t_6 != -1)) {
4471 __Pyx_RaiseBufferIndexError(__pyx_t_6);
4472 __PYX_ERR(0, 106, __pyx_L1_error)
4473 }
4474 __pyx_t_2 = (((*__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_min_val.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_min_val.diminfo[0].strides)) > __pyx_v_val) != 0);
4475 if (__pyx_t_2) {
4476
4477 /* "bx/bbi/bbi_file.pyx":107
4478 * max_val[j] = val
4479 * if min_val[j] > val:
4480 * min_val[j] = val # <<<<<<<<<<<<<<
4481 *
4482 * cdef class BlockHandler:
4483 */
4484 __pyx_t_5 = __pyx_v_j;
4485 __pyx_t_6 = -1;
4486 if (__pyx_t_5 < 0) {
4487 __pyx_t_5 += __pyx_pybuffernd_min_val.diminfo[0].shape;
4488 if (unlikely(__pyx_t_5 < 0)) __pyx_t_6 = 0;
4489 } else if (unlikely(__pyx_t_5 >= __pyx_pybuffernd_min_val.diminfo[0].shape)) __pyx_t_6 = 0;
4490 if (unlikely(__pyx_t_6 != -1)) {
4491 __Pyx_RaiseBufferIndexError(__pyx_t_6);
4492 __PYX_ERR(0, 107, __pyx_L1_error)
4493 }
4494 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_min_val.rcbuffer->pybuffer.buf, __pyx_t_5, __pyx_pybuffernd_min_val.diminfo[0].strides) = __pyx_v_val;
4495
4496 /* "bx/bbi/bbi_file.pyx":106
4497 * if max_val[j] < val:
4498 * max_val[j] = val
4499 * if min_val[j] > val: # <<<<<<<<<<<<<<
4500 * min_val[j] = val
4501 *
4502 */
4503 }
4504
4505 /* "bx/bbi/bbi_file.pyx":97
4506 * base_end = base_start + base_step
4507 * overlap = range_intersection( base_start, base_end, s, e )
4508 * if overlap > 0: # <<<<<<<<<<<<<<
4509 * interval_size = e - s
4510 * overlap_factor = <double> overlap / interval_size
4511 */
4512 }
4513 }
4514
4515 /* "bx/bbi/bbi_file.pyx":76
4516 * self.sum_data = numpy.zeros( self.size, dtype=numpy.float64 )
4517 * self.sum_squares = numpy.zeros( self.size, dtype=numpy.float64 )
4518 * cdef accumulate_interval_value( self, bits32 s, bits32 e, float val ): # <<<<<<<<<<<<<<
4519 * cdef int base_start, base_end, base_step, overlap, j, interval_size
4520 * cdef double overlap_factor, interval_weight
4521 */
4522
4523 /* function exit code */
4524 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
4525 goto __pyx_L0;
4526 __pyx_L1_error:;
4527 __Pyx_XDECREF(__pyx_t_1);
4528 { PyObject *__pyx_type, *__pyx_value, *__pyx_tb;
4529 __Pyx_PyThreadState_declare
4530 __Pyx_PyThreadState_assign
4531 __Pyx_ErrFetch(&__pyx_type, &__pyx_value, &__pyx_tb);
4532 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_max_val.rcbuffer->pybuffer);
4533 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_min_val.rcbuffer->pybuffer);
4534 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_data.rcbuffer->pybuffer);
4535 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_squares.rcbuffer->pybuffer);
4536 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_valid_count.rcbuffer->pybuffer);
4537 __Pyx_ErrRestore(__pyx_type, __pyx_value, __pyx_tb);}
4538 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.accumulate_interval_value", __pyx_clineno, __pyx_lineno, __pyx_filename);
4539 __pyx_r = 0;
4540 goto __pyx_L2;
4541 __pyx_L0:;
4542 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_max_val.rcbuffer->pybuffer);
4543 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_min_val.rcbuffer->pybuffer);
4544 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_data.rcbuffer->pybuffer);
4545 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_squares.rcbuffer->pybuffer);
4546 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_valid_count.rcbuffer->pybuffer);
4547 __pyx_L2:;
4548 __Pyx_XDECREF((PyObject *)__pyx_v_valid_count);
4549 __Pyx_XDECREF((PyObject *)__pyx_v_min_val);
4550 __Pyx_XDECREF((PyObject *)__pyx_v_max_val);
4551 __Pyx_XDECREF((PyObject *)__pyx_v_sum_data);
4552 __Pyx_XDECREF((PyObject *)__pyx_v_sum_squares);
4553 __Pyx_XGIVEREF(__pyx_r);
4554 __Pyx_RefNannyFinishContext();
4555 return __pyx_r;
4556 }
4557
4558 /* "bx/bbi/bbi_file.pxd":26
4559 * aggregation over a particular range and resolution
4560 * """
4561 * cdef public bits32 start # <<<<<<<<<<<<<<
4562 * cdef public bits32 end
4563 * cdef public int size
4564 */
4565
4566 /* Python wrapper */
4567 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5start_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5start_1__get__(PyObject * __pyx_v_self)4568 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5start_1__get__(PyObject *__pyx_v_self) {
4569 PyObject *__pyx_r = 0;
4570 __Pyx_RefNannyDeclarations
4571 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
4572 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_5start___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
4573
4574 /* function exit code */
4575 __Pyx_RefNannyFinishContext();
4576 return __pyx_r;
4577 }
4578
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_5start___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)4579 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_5start___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
4580 PyObject *__pyx_r = NULL;
4581 __Pyx_RefNannyDeclarations
4582 PyObject *__pyx_t_1 = NULL;
4583 int __pyx_lineno = 0;
4584 const char *__pyx_filename = NULL;
4585 int __pyx_clineno = 0;
4586 __Pyx_RefNannySetupContext("__get__", 0);
4587 __Pyx_XDECREF(__pyx_r);
4588 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->start); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 26, __pyx_L1_error)
4589 __Pyx_GOTREF(__pyx_t_1);
4590 __pyx_r = __pyx_t_1;
4591 __pyx_t_1 = 0;
4592 goto __pyx_L0;
4593
4594 /* function exit code */
4595 __pyx_L1_error:;
4596 __Pyx_XDECREF(__pyx_t_1);
4597 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.start.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
4598 __pyx_r = NULL;
4599 __pyx_L0:;
4600 __Pyx_XGIVEREF(__pyx_r);
4601 __Pyx_RefNannyFinishContext();
4602 return __pyx_r;
4603 }
4604
4605 /* Python wrapper */
4606 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5start_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5start_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)4607 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5start_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
4608 int __pyx_r;
4609 __Pyx_RefNannyDeclarations
4610 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
4611 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_5start_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), ((PyObject *)__pyx_v_value));
4612
4613 /* function exit code */
4614 __Pyx_RefNannyFinishContext();
4615 return __pyx_r;
4616 }
4617
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_5start_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,PyObject * __pyx_v_value)4618 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_5start_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value) {
4619 int __pyx_r;
4620 __Pyx_RefNannyDeclarations
4621 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_1;
4622 int __pyx_lineno = 0;
4623 const char *__pyx_filename = NULL;
4624 int __pyx_clineno = 0;
4625 __Pyx_RefNannySetupContext("__set__", 0);
4626 __pyx_t_1 = __Pyx_PyInt_As_unsigned_int(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(1, 26, __pyx_L1_error)
4627 __pyx_v_self->start = __pyx_t_1;
4628
4629 /* function exit code */
4630 __pyx_r = 0;
4631 goto __pyx_L0;
4632 __pyx_L1_error:;
4633 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.start.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
4634 __pyx_r = -1;
4635 __pyx_L0:;
4636 __Pyx_RefNannyFinishContext();
4637 return __pyx_r;
4638 }
4639
4640 /* "bx/bbi/bbi_file.pxd":27
4641 * """
4642 * cdef public bits32 start
4643 * cdef public bits32 end # <<<<<<<<<<<<<<
4644 * cdef public int size
4645 * cdef public numpy.ndarray valid_count
4646 */
4647
4648 /* Python wrapper */
4649 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3end_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3end_1__get__(PyObject * __pyx_v_self)4650 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3end_1__get__(PyObject *__pyx_v_self) {
4651 PyObject *__pyx_r = 0;
4652 __Pyx_RefNannyDeclarations
4653 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
4654 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_3end___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
4655
4656 /* function exit code */
4657 __Pyx_RefNannyFinishContext();
4658 return __pyx_r;
4659 }
4660
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_3end___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)4661 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_3end___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
4662 PyObject *__pyx_r = NULL;
4663 __Pyx_RefNannyDeclarations
4664 PyObject *__pyx_t_1 = NULL;
4665 int __pyx_lineno = 0;
4666 const char *__pyx_filename = NULL;
4667 int __pyx_clineno = 0;
4668 __Pyx_RefNannySetupContext("__get__", 0);
4669 __Pyx_XDECREF(__pyx_r);
4670 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->end); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 27, __pyx_L1_error)
4671 __Pyx_GOTREF(__pyx_t_1);
4672 __pyx_r = __pyx_t_1;
4673 __pyx_t_1 = 0;
4674 goto __pyx_L0;
4675
4676 /* function exit code */
4677 __pyx_L1_error:;
4678 __Pyx_XDECREF(__pyx_t_1);
4679 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.end.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
4680 __pyx_r = NULL;
4681 __pyx_L0:;
4682 __Pyx_XGIVEREF(__pyx_r);
4683 __Pyx_RefNannyFinishContext();
4684 return __pyx_r;
4685 }
4686
4687 /* Python wrapper */
4688 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3end_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3end_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)4689 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3end_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
4690 int __pyx_r;
4691 __Pyx_RefNannyDeclarations
4692 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
4693 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_3end_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), ((PyObject *)__pyx_v_value));
4694
4695 /* function exit code */
4696 __Pyx_RefNannyFinishContext();
4697 return __pyx_r;
4698 }
4699
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_3end_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,PyObject * __pyx_v_value)4700 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_3end_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value) {
4701 int __pyx_r;
4702 __Pyx_RefNannyDeclarations
4703 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_1;
4704 int __pyx_lineno = 0;
4705 const char *__pyx_filename = NULL;
4706 int __pyx_clineno = 0;
4707 __Pyx_RefNannySetupContext("__set__", 0);
4708 __pyx_t_1 = __Pyx_PyInt_As_unsigned_int(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(1, 27, __pyx_L1_error)
4709 __pyx_v_self->end = __pyx_t_1;
4710
4711 /* function exit code */
4712 __pyx_r = 0;
4713 goto __pyx_L0;
4714 __pyx_L1_error:;
4715 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.end.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
4716 __pyx_r = -1;
4717 __pyx_L0:;
4718 __Pyx_RefNannyFinishContext();
4719 return __pyx_r;
4720 }
4721
4722 /* "bx/bbi/bbi_file.pxd":28
4723 * cdef public bits32 start
4724 * cdef public bits32 end
4725 * cdef public int size # <<<<<<<<<<<<<<
4726 * cdef public numpy.ndarray valid_count
4727 * cdef public numpy.ndarray min_val
4728 */
4729
4730 /* Python wrapper */
4731 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_4size_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_4size_1__get__(PyObject * __pyx_v_self)4732 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_4size_1__get__(PyObject *__pyx_v_self) {
4733 PyObject *__pyx_r = 0;
4734 __Pyx_RefNannyDeclarations
4735 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
4736 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4size___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
4737
4738 /* function exit code */
4739 __Pyx_RefNannyFinishContext();
4740 return __pyx_r;
4741 }
4742
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4size___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)4743 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4size___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
4744 PyObject *__pyx_r = NULL;
4745 __Pyx_RefNannyDeclarations
4746 PyObject *__pyx_t_1 = NULL;
4747 int __pyx_lineno = 0;
4748 const char *__pyx_filename = NULL;
4749 int __pyx_clineno = 0;
4750 __Pyx_RefNannySetupContext("__get__", 0);
4751 __Pyx_XDECREF(__pyx_r);
4752 __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_self->size); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 28, __pyx_L1_error)
4753 __Pyx_GOTREF(__pyx_t_1);
4754 __pyx_r = __pyx_t_1;
4755 __pyx_t_1 = 0;
4756 goto __pyx_L0;
4757
4758 /* function exit code */
4759 __pyx_L1_error:;
4760 __Pyx_XDECREF(__pyx_t_1);
4761 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.size.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
4762 __pyx_r = NULL;
4763 __pyx_L0:;
4764 __Pyx_XGIVEREF(__pyx_r);
4765 __Pyx_RefNannyFinishContext();
4766 return __pyx_r;
4767 }
4768
4769 /* Python wrapper */
4770 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_4size_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_4size_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)4771 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_4size_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
4772 int __pyx_r;
4773 __Pyx_RefNannyDeclarations
4774 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
4775 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4size_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), ((PyObject *)__pyx_v_value));
4776
4777 /* function exit code */
4778 __Pyx_RefNannyFinishContext();
4779 return __pyx_r;
4780 }
4781
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4size_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,PyObject * __pyx_v_value)4782 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4size_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value) {
4783 int __pyx_r;
4784 __Pyx_RefNannyDeclarations
4785 int __pyx_t_1;
4786 int __pyx_lineno = 0;
4787 const char *__pyx_filename = NULL;
4788 int __pyx_clineno = 0;
4789 __Pyx_RefNannySetupContext("__set__", 0);
4790 __pyx_t_1 = __Pyx_PyInt_As_int(__pyx_v_value); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 28, __pyx_L1_error)
4791 __pyx_v_self->size = __pyx_t_1;
4792
4793 /* function exit code */
4794 __pyx_r = 0;
4795 goto __pyx_L0;
4796 __pyx_L1_error:;
4797 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.size.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
4798 __pyx_r = -1;
4799 __pyx_L0:;
4800 __Pyx_RefNannyFinishContext();
4801 return __pyx_r;
4802 }
4803
4804 /* "bx/bbi/bbi_file.pxd":29
4805 * cdef public bits32 end
4806 * cdef public int size
4807 * cdef public numpy.ndarray valid_count # <<<<<<<<<<<<<<
4808 * cdef public numpy.ndarray min_val
4809 * cdef public numpy.ndarray max_val
4810 */
4811
4812 /* Python wrapper */
4813 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_1__get__(PyObject * __pyx_v_self)4814 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_1__get__(PyObject *__pyx_v_self) {
4815 PyObject *__pyx_r = 0;
4816 __Pyx_RefNannyDeclarations
4817 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
4818 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
4819
4820 /* function exit code */
4821 __Pyx_RefNannyFinishContext();
4822 return __pyx_r;
4823 }
4824
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)4825 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
4826 PyObject *__pyx_r = NULL;
4827 __Pyx_RefNannyDeclarations
4828 __Pyx_RefNannySetupContext("__get__", 0);
4829 __Pyx_XDECREF(__pyx_r);
4830 __Pyx_INCREF(((PyObject *)__pyx_v_self->valid_count));
4831 __pyx_r = ((PyObject *)__pyx_v_self->valid_count);
4832 goto __pyx_L0;
4833
4834 /* function exit code */
4835 __pyx_L0:;
4836 __Pyx_XGIVEREF(__pyx_r);
4837 __Pyx_RefNannyFinishContext();
4838 return __pyx_r;
4839 }
4840
4841 /* Python wrapper */
4842 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)4843 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
4844 int __pyx_r;
4845 __Pyx_RefNannyDeclarations
4846 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
4847 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), ((PyObject *)__pyx_v_value));
4848
4849 /* function exit code */
4850 __Pyx_RefNannyFinishContext();
4851 return __pyx_r;
4852 }
4853
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,PyObject * __pyx_v_value)4854 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value) {
4855 int __pyx_r;
4856 __Pyx_RefNannyDeclarations
4857 PyObject *__pyx_t_1 = NULL;
4858 int __pyx_lineno = 0;
4859 const char *__pyx_filename = NULL;
4860 int __pyx_clineno = 0;
4861 __Pyx_RefNannySetupContext("__set__", 0);
4862 if (!(likely(((__pyx_v_value) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_value, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(1, 29, __pyx_L1_error)
4863 __pyx_t_1 = __pyx_v_value;
4864 __Pyx_INCREF(__pyx_t_1);
4865 __Pyx_GIVEREF(__pyx_t_1);
4866 __Pyx_GOTREF(__pyx_v_self->valid_count);
4867 __Pyx_DECREF(((PyObject *)__pyx_v_self->valid_count));
4868 __pyx_v_self->valid_count = ((PyArrayObject *)__pyx_t_1);
4869 __pyx_t_1 = 0;
4870
4871 /* function exit code */
4872 __pyx_r = 0;
4873 goto __pyx_L0;
4874 __pyx_L1_error:;
4875 __Pyx_XDECREF(__pyx_t_1);
4876 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.valid_count.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
4877 __pyx_r = -1;
4878 __pyx_L0:;
4879 __Pyx_RefNannyFinishContext();
4880 return __pyx_r;
4881 }
4882
4883 /* Python wrapper */
4884 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_5__del__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_5__del__(PyObject * __pyx_v_self)4885 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_5__del__(PyObject *__pyx_v_self) {
4886 int __pyx_r;
4887 __Pyx_RefNannyDeclarations
4888 __Pyx_RefNannySetupContext("__del__ (wrapper)", 0);
4889 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_4__del__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
4890
4891 /* function exit code */
4892 __Pyx_RefNannyFinishContext();
4893 return __pyx_r;
4894 }
4895
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)4896 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
4897 int __pyx_r;
4898 __Pyx_RefNannyDeclarations
4899 __Pyx_RefNannySetupContext("__del__", 0);
4900 __Pyx_INCREF(Py_None);
4901 __Pyx_GIVEREF(Py_None);
4902 __Pyx_GOTREF(__pyx_v_self->valid_count);
4903 __Pyx_DECREF(((PyObject *)__pyx_v_self->valid_count));
4904 __pyx_v_self->valid_count = ((PyArrayObject *)Py_None);
4905
4906 /* function exit code */
4907 __pyx_r = 0;
4908 __Pyx_RefNannyFinishContext();
4909 return __pyx_r;
4910 }
4911
4912 /* "bx/bbi/bbi_file.pxd":30
4913 * cdef public int size
4914 * cdef public numpy.ndarray valid_count
4915 * cdef public numpy.ndarray min_val # <<<<<<<<<<<<<<
4916 * cdef public numpy.ndarray max_val
4917 * cdef public numpy.ndarray sum_data
4918 */
4919
4920 /* Python wrapper */
4921 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_1__get__(PyObject * __pyx_v_self)4922 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_1__get__(PyObject *__pyx_v_self) {
4923 PyObject *__pyx_r = 0;
4924 __Pyx_RefNannyDeclarations
4925 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
4926 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
4927
4928 /* function exit code */
4929 __Pyx_RefNannyFinishContext();
4930 return __pyx_r;
4931 }
4932
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)4933 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
4934 PyObject *__pyx_r = NULL;
4935 __Pyx_RefNannyDeclarations
4936 __Pyx_RefNannySetupContext("__get__", 0);
4937 __Pyx_XDECREF(__pyx_r);
4938 __Pyx_INCREF(((PyObject *)__pyx_v_self->min_val));
4939 __pyx_r = ((PyObject *)__pyx_v_self->min_val);
4940 goto __pyx_L0;
4941
4942 /* function exit code */
4943 __pyx_L0:;
4944 __Pyx_XGIVEREF(__pyx_r);
4945 __Pyx_RefNannyFinishContext();
4946 return __pyx_r;
4947 }
4948
4949 /* Python wrapper */
4950 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)4951 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
4952 int __pyx_r;
4953 __Pyx_RefNannyDeclarations
4954 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
4955 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), ((PyObject *)__pyx_v_value));
4956
4957 /* function exit code */
4958 __Pyx_RefNannyFinishContext();
4959 return __pyx_r;
4960 }
4961
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,PyObject * __pyx_v_value)4962 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value) {
4963 int __pyx_r;
4964 __Pyx_RefNannyDeclarations
4965 PyObject *__pyx_t_1 = NULL;
4966 int __pyx_lineno = 0;
4967 const char *__pyx_filename = NULL;
4968 int __pyx_clineno = 0;
4969 __Pyx_RefNannySetupContext("__set__", 0);
4970 if (!(likely(((__pyx_v_value) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_value, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(1, 30, __pyx_L1_error)
4971 __pyx_t_1 = __pyx_v_value;
4972 __Pyx_INCREF(__pyx_t_1);
4973 __Pyx_GIVEREF(__pyx_t_1);
4974 __Pyx_GOTREF(__pyx_v_self->min_val);
4975 __Pyx_DECREF(((PyObject *)__pyx_v_self->min_val));
4976 __pyx_v_self->min_val = ((PyArrayObject *)__pyx_t_1);
4977 __pyx_t_1 = 0;
4978
4979 /* function exit code */
4980 __pyx_r = 0;
4981 goto __pyx_L0;
4982 __pyx_L1_error:;
4983 __Pyx_XDECREF(__pyx_t_1);
4984 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.min_val.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
4985 __pyx_r = -1;
4986 __pyx_L0:;
4987 __Pyx_RefNannyFinishContext();
4988 return __pyx_r;
4989 }
4990
4991 /* Python wrapper */
4992 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_5__del__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_5__del__(PyObject * __pyx_v_self)4993 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_5__del__(PyObject *__pyx_v_self) {
4994 int __pyx_r;
4995 __Pyx_RefNannyDeclarations
4996 __Pyx_RefNannySetupContext("__del__ (wrapper)", 0);
4997 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_4__del__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
4998
4999 /* function exit code */
5000 __Pyx_RefNannyFinishContext();
5001 return __pyx_r;
5002 }
5003
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)5004 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
5005 int __pyx_r;
5006 __Pyx_RefNannyDeclarations
5007 __Pyx_RefNannySetupContext("__del__", 0);
5008 __Pyx_INCREF(Py_None);
5009 __Pyx_GIVEREF(Py_None);
5010 __Pyx_GOTREF(__pyx_v_self->min_val);
5011 __Pyx_DECREF(((PyObject *)__pyx_v_self->min_val));
5012 __pyx_v_self->min_val = ((PyArrayObject *)Py_None);
5013
5014 /* function exit code */
5015 __pyx_r = 0;
5016 __Pyx_RefNannyFinishContext();
5017 return __pyx_r;
5018 }
5019
5020 /* "bx/bbi/bbi_file.pxd":31
5021 * cdef public numpy.ndarray valid_count
5022 * cdef public numpy.ndarray min_val
5023 * cdef public numpy.ndarray max_val # <<<<<<<<<<<<<<
5024 * cdef public numpy.ndarray sum_data
5025 * cdef public numpy.ndarray sum_squares
5026 */
5027
5028 /* Python wrapper */
5029 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_1__get__(PyObject * __pyx_v_self)5030 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_1__get__(PyObject *__pyx_v_self) {
5031 PyObject *__pyx_r = 0;
5032 __Pyx_RefNannyDeclarations
5033 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
5034 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
5035
5036 /* function exit code */
5037 __Pyx_RefNannyFinishContext();
5038 return __pyx_r;
5039 }
5040
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)5041 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
5042 PyObject *__pyx_r = NULL;
5043 __Pyx_RefNannyDeclarations
5044 __Pyx_RefNannySetupContext("__get__", 0);
5045 __Pyx_XDECREF(__pyx_r);
5046 __Pyx_INCREF(((PyObject *)__pyx_v_self->max_val));
5047 __pyx_r = ((PyObject *)__pyx_v_self->max_val);
5048 goto __pyx_L0;
5049
5050 /* function exit code */
5051 __pyx_L0:;
5052 __Pyx_XGIVEREF(__pyx_r);
5053 __Pyx_RefNannyFinishContext();
5054 return __pyx_r;
5055 }
5056
5057 /* Python wrapper */
5058 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)5059 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
5060 int __pyx_r;
5061 __Pyx_RefNannyDeclarations
5062 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
5063 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), ((PyObject *)__pyx_v_value));
5064
5065 /* function exit code */
5066 __Pyx_RefNannyFinishContext();
5067 return __pyx_r;
5068 }
5069
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,PyObject * __pyx_v_value)5070 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value) {
5071 int __pyx_r;
5072 __Pyx_RefNannyDeclarations
5073 PyObject *__pyx_t_1 = NULL;
5074 int __pyx_lineno = 0;
5075 const char *__pyx_filename = NULL;
5076 int __pyx_clineno = 0;
5077 __Pyx_RefNannySetupContext("__set__", 0);
5078 if (!(likely(((__pyx_v_value) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_value, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(1, 31, __pyx_L1_error)
5079 __pyx_t_1 = __pyx_v_value;
5080 __Pyx_INCREF(__pyx_t_1);
5081 __Pyx_GIVEREF(__pyx_t_1);
5082 __Pyx_GOTREF(__pyx_v_self->max_val);
5083 __Pyx_DECREF(((PyObject *)__pyx_v_self->max_val));
5084 __pyx_v_self->max_val = ((PyArrayObject *)__pyx_t_1);
5085 __pyx_t_1 = 0;
5086
5087 /* function exit code */
5088 __pyx_r = 0;
5089 goto __pyx_L0;
5090 __pyx_L1_error:;
5091 __Pyx_XDECREF(__pyx_t_1);
5092 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.max_val.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
5093 __pyx_r = -1;
5094 __pyx_L0:;
5095 __Pyx_RefNannyFinishContext();
5096 return __pyx_r;
5097 }
5098
5099 /* Python wrapper */
5100 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_5__del__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_5__del__(PyObject * __pyx_v_self)5101 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_5__del__(PyObject *__pyx_v_self) {
5102 int __pyx_r;
5103 __Pyx_RefNannyDeclarations
5104 __Pyx_RefNannySetupContext("__del__ (wrapper)", 0);
5105 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_4__del__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
5106
5107 /* function exit code */
5108 __Pyx_RefNannyFinishContext();
5109 return __pyx_r;
5110 }
5111
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)5112 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
5113 int __pyx_r;
5114 __Pyx_RefNannyDeclarations
5115 __Pyx_RefNannySetupContext("__del__", 0);
5116 __Pyx_INCREF(Py_None);
5117 __Pyx_GIVEREF(Py_None);
5118 __Pyx_GOTREF(__pyx_v_self->max_val);
5119 __Pyx_DECREF(((PyObject *)__pyx_v_self->max_val));
5120 __pyx_v_self->max_val = ((PyArrayObject *)Py_None);
5121
5122 /* function exit code */
5123 __pyx_r = 0;
5124 __Pyx_RefNannyFinishContext();
5125 return __pyx_r;
5126 }
5127
5128 /* "bx/bbi/bbi_file.pxd":32
5129 * cdef public numpy.ndarray min_val
5130 * cdef public numpy.ndarray max_val
5131 * cdef public numpy.ndarray sum_data # <<<<<<<<<<<<<<
5132 * cdef public numpy.ndarray sum_squares
5133 *
5134 */
5135
5136 /* Python wrapper */
5137 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_1__get__(PyObject * __pyx_v_self)5138 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_1__get__(PyObject *__pyx_v_self) {
5139 PyObject *__pyx_r = 0;
5140 __Pyx_RefNannyDeclarations
5141 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
5142 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
5143
5144 /* function exit code */
5145 __Pyx_RefNannyFinishContext();
5146 return __pyx_r;
5147 }
5148
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)5149 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
5150 PyObject *__pyx_r = NULL;
5151 __Pyx_RefNannyDeclarations
5152 __Pyx_RefNannySetupContext("__get__", 0);
5153 __Pyx_XDECREF(__pyx_r);
5154 __Pyx_INCREF(((PyObject *)__pyx_v_self->sum_data));
5155 __pyx_r = ((PyObject *)__pyx_v_self->sum_data);
5156 goto __pyx_L0;
5157
5158 /* function exit code */
5159 __pyx_L0:;
5160 __Pyx_XGIVEREF(__pyx_r);
5161 __Pyx_RefNannyFinishContext();
5162 return __pyx_r;
5163 }
5164
5165 /* Python wrapper */
5166 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)5167 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
5168 int __pyx_r;
5169 __Pyx_RefNannyDeclarations
5170 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
5171 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), ((PyObject *)__pyx_v_value));
5172
5173 /* function exit code */
5174 __Pyx_RefNannyFinishContext();
5175 return __pyx_r;
5176 }
5177
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,PyObject * __pyx_v_value)5178 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value) {
5179 int __pyx_r;
5180 __Pyx_RefNannyDeclarations
5181 PyObject *__pyx_t_1 = NULL;
5182 int __pyx_lineno = 0;
5183 const char *__pyx_filename = NULL;
5184 int __pyx_clineno = 0;
5185 __Pyx_RefNannySetupContext("__set__", 0);
5186 if (!(likely(((__pyx_v_value) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_value, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(1, 32, __pyx_L1_error)
5187 __pyx_t_1 = __pyx_v_value;
5188 __Pyx_INCREF(__pyx_t_1);
5189 __Pyx_GIVEREF(__pyx_t_1);
5190 __Pyx_GOTREF(__pyx_v_self->sum_data);
5191 __Pyx_DECREF(((PyObject *)__pyx_v_self->sum_data));
5192 __pyx_v_self->sum_data = ((PyArrayObject *)__pyx_t_1);
5193 __pyx_t_1 = 0;
5194
5195 /* function exit code */
5196 __pyx_r = 0;
5197 goto __pyx_L0;
5198 __pyx_L1_error:;
5199 __Pyx_XDECREF(__pyx_t_1);
5200 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.sum_data.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
5201 __pyx_r = -1;
5202 __pyx_L0:;
5203 __Pyx_RefNannyFinishContext();
5204 return __pyx_r;
5205 }
5206
5207 /* Python wrapper */
5208 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_5__del__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_5__del__(PyObject * __pyx_v_self)5209 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_5__del__(PyObject *__pyx_v_self) {
5210 int __pyx_r;
5211 __Pyx_RefNannyDeclarations
5212 __Pyx_RefNannySetupContext("__del__ (wrapper)", 0);
5213 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_4__del__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
5214
5215 /* function exit code */
5216 __Pyx_RefNannyFinishContext();
5217 return __pyx_r;
5218 }
5219
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)5220 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
5221 int __pyx_r;
5222 __Pyx_RefNannyDeclarations
5223 __Pyx_RefNannySetupContext("__del__", 0);
5224 __Pyx_INCREF(Py_None);
5225 __Pyx_GIVEREF(Py_None);
5226 __Pyx_GOTREF(__pyx_v_self->sum_data);
5227 __Pyx_DECREF(((PyObject *)__pyx_v_self->sum_data));
5228 __pyx_v_self->sum_data = ((PyArrayObject *)Py_None);
5229
5230 /* function exit code */
5231 __pyx_r = 0;
5232 __Pyx_RefNannyFinishContext();
5233 return __pyx_r;
5234 }
5235
5236 /* "bx/bbi/bbi_file.pxd":33
5237 * cdef public numpy.ndarray max_val
5238 * cdef public numpy.ndarray sum_data
5239 * cdef public numpy.ndarray sum_squares # <<<<<<<<<<<<<<
5240 *
5241 * cdef accumulate_interval_value( self, bits32 s, bits32 e, float val )
5242 */
5243
5244 /* Python wrapper */
5245 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_1__get__(PyObject * __pyx_v_self)5246 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_1__get__(PyObject *__pyx_v_self) {
5247 PyObject *__pyx_r = 0;
5248 __Pyx_RefNannyDeclarations
5249 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
5250 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
5251
5252 /* function exit code */
5253 __Pyx_RefNannyFinishContext();
5254 return __pyx_r;
5255 }
5256
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)5257 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
5258 PyObject *__pyx_r = NULL;
5259 __Pyx_RefNannyDeclarations
5260 __Pyx_RefNannySetupContext("__get__", 0);
5261 __Pyx_XDECREF(__pyx_r);
5262 __Pyx_INCREF(((PyObject *)__pyx_v_self->sum_squares));
5263 __pyx_r = ((PyObject *)__pyx_v_self->sum_squares);
5264 goto __pyx_L0;
5265
5266 /* function exit code */
5267 __pyx_L0:;
5268 __Pyx_XGIVEREF(__pyx_r);
5269 __Pyx_RefNannyFinishContext();
5270 return __pyx_r;
5271 }
5272
5273 /* Python wrapper */
5274 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)5275 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
5276 int __pyx_r;
5277 __Pyx_RefNannyDeclarations
5278 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
5279 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), ((PyObject *)__pyx_v_value));
5280
5281 /* function exit code */
5282 __Pyx_RefNannyFinishContext();
5283 return __pyx_r;
5284 }
5285
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,PyObject * __pyx_v_value)5286 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v_value) {
5287 int __pyx_r;
5288 __Pyx_RefNannyDeclarations
5289 PyObject *__pyx_t_1 = NULL;
5290 int __pyx_lineno = 0;
5291 const char *__pyx_filename = NULL;
5292 int __pyx_clineno = 0;
5293 __Pyx_RefNannySetupContext("__set__", 0);
5294 if (!(likely(((__pyx_v_value) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_value, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(1, 33, __pyx_L1_error)
5295 __pyx_t_1 = __pyx_v_value;
5296 __Pyx_INCREF(__pyx_t_1);
5297 __Pyx_GIVEREF(__pyx_t_1);
5298 __Pyx_GOTREF(__pyx_v_self->sum_squares);
5299 __Pyx_DECREF(((PyObject *)__pyx_v_self->sum_squares));
5300 __pyx_v_self->sum_squares = ((PyArrayObject *)__pyx_t_1);
5301 __pyx_t_1 = 0;
5302
5303 /* function exit code */
5304 __pyx_r = 0;
5305 goto __pyx_L0;
5306 __pyx_L1_error:;
5307 __Pyx_XDECREF(__pyx_t_1);
5308 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.sum_squares.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
5309 __pyx_r = -1;
5310 __pyx_L0:;
5311 __Pyx_RefNannyFinishContext();
5312 return __pyx_r;
5313 }
5314
5315 /* Python wrapper */
5316 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_5__del__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_5__del__(PyObject * __pyx_v_self)5317 static int __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_5__del__(PyObject *__pyx_v_self) {
5318 int __pyx_r;
5319 __Pyx_RefNannyDeclarations
5320 __Pyx_RefNannySetupContext("__del__ (wrapper)", 0);
5321 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_4__del__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
5322
5323 /* function exit code */
5324 __Pyx_RefNannyFinishContext();
5325 return __pyx_r;
5326 }
5327
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)5328 static int __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
5329 int __pyx_r;
5330 __Pyx_RefNannyDeclarations
5331 __Pyx_RefNannySetupContext("__del__", 0);
5332 __Pyx_INCREF(Py_None);
5333 __Pyx_GIVEREF(Py_None);
5334 __Pyx_GOTREF(__pyx_v_self->sum_squares);
5335 __Pyx_DECREF(((PyObject *)__pyx_v_self->sum_squares));
5336 __pyx_v_self->sum_squares = ((PyArrayObject *)Py_None);
5337
5338 /* function exit code */
5339 __pyx_r = 0;
5340 __Pyx_RefNannyFinishContext();
5341 return __pyx_r;
5342 }
5343
5344 /* "(tree fragment)":1
5345 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
5346 * cdef tuple state
5347 * cdef object _dict
5348 */
5349
5350 /* Python wrapper */
5351 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3__reduce_cython__(PyObject * __pyx_v_self,CYTHON_UNUSED PyObject * unused)5352 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
5353 PyObject *__pyx_r = 0;
5354 __Pyx_RefNannyDeclarations
5355 __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
5356 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_2__reduce_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self));
5357
5358 /* function exit code */
5359 __Pyx_RefNannyFinishContext();
5360 return __pyx_r;
5361 }
5362
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_2__reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self)5363 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_2__reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self) {
5364 PyObject *__pyx_v_state = 0;
5365 PyObject *__pyx_v__dict = 0;
5366 int __pyx_v_use_setstate;
5367 PyObject *__pyx_r = NULL;
5368 __Pyx_RefNannyDeclarations
5369 PyObject *__pyx_t_1 = NULL;
5370 PyObject *__pyx_t_2 = NULL;
5371 PyObject *__pyx_t_3 = NULL;
5372 PyObject *__pyx_t_4 = NULL;
5373 int __pyx_t_5;
5374 int __pyx_t_6;
5375 int __pyx_t_7;
5376 int __pyx_lineno = 0;
5377 const char *__pyx_filename = NULL;
5378 int __pyx_clineno = 0;
5379 __Pyx_RefNannySetupContext("__reduce_cython__", 0);
5380
5381 /* "(tree fragment)":5
5382 * cdef object _dict
5383 * cdef bint use_setstate
5384 * state = (self.end, self.max_val, self.min_val, self.size, self.start, self.sum_data, self.sum_squares, self.valid_count) # <<<<<<<<<<<<<<
5385 * _dict = getattr(self, '__dict__', None)
5386 * if _dict is not None:
5387 */
5388 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->end); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 5, __pyx_L1_error)
5389 __Pyx_GOTREF(__pyx_t_1);
5390 __pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_self->size); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
5391 __Pyx_GOTREF(__pyx_t_2);
5392 __pyx_t_3 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->start); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 5, __pyx_L1_error)
5393 __Pyx_GOTREF(__pyx_t_3);
5394 __pyx_t_4 = PyTuple_New(8); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 5, __pyx_L1_error)
5395 __Pyx_GOTREF(__pyx_t_4);
5396 __Pyx_GIVEREF(__pyx_t_1);
5397 PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_1);
5398 __Pyx_INCREF(((PyObject *)__pyx_v_self->max_val));
5399 __Pyx_GIVEREF(((PyObject *)__pyx_v_self->max_val));
5400 PyTuple_SET_ITEM(__pyx_t_4, 1, ((PyObject *)__pyx_v_self->max_val));
5401 __Pyx_INCREF(((PyObject *)__pyx_v_self->min_val));
5402 __Pyx_GIVEREF(((PyObject *)__pyx_v_self->min_val));
5403 PyTuple_SET_ITEM(__pyx_t_4, 2, ((PyObject *)__pyx_v_self->min_val));
5404 __Pyx_GIVEREF(__pyx_t_2);
5405 PyTuple_SET_ITEM(__pyx_t_4, 3, __pyx_t_2);
5406 __Pyx_GIVEREF(__pyx_t_3);
5407 PyTuple_SET_ITEM(__pyx_t_4, 4, __pyx_t_3);
5408 __Pyx_INCREF(((PyObject *)__pyx_v_self->sum_data));
5409 __Pyx_GIVEREF(((PyObject *)__pyx_v_self->sum_data));
5410 PyTuple_SET_ITEM(__pyx_t_4, 5, ((PyObject *)__pyx_v_self->sum_data));
5411 __Pyx_INCREF(((PyObject *)__pyx_v_self->sum_squares));
5412 __Pyx_GIVEREF(((PyObject *)__pyx_v_self->sum_squares));
5413 PyTuple_SET_ITEM(__pyx_t_4, 6, ((PyObject *)__pyx_v_self->sum_squares));
5414 __Pyx_INCREF(((PyObject *)__pyx_v_self->valid_count));
5415 __Pyx_GIVEREF(((PyObject *)__pyx_v_self->valid_count));
5416 PyTuple_SET_ITEM(__pyx_t_4, 7, ((PyObject *)__pyx_v_self->valid_count));
5417 __pyx_t_1 = 0;
5418 __pyx_t_2 = 0;
5419 __pyx_t_3 = 0;
5420 __pyx_v_state = ((PyObject*)__pyx_t_4);
5421 __pyx_t_4 = 0;
5422
5423 /* "(tree fragment)":6
5424 * cdef bint use_setstate
5425 * state = (self.end, self.max_val, self.min_val, self.size, self.start, self.sum_data, self.sum_squares, self.valid_count)
5426 * _dict = getattr(self, '__dict__', None) # <<<<<<<<<<<<<<
5427 * if _dict is not None:
5428 * state += (_dict,)
5429 */
5430 __pyx_t_4 = __Pyx_GetAttr3(((PyObject *)__pyx_v_self), __pyx_n_s_dict, Py_None); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 6, __pyx_L1_error)
5431 __Pyx_GOTREF(__pyx_t_4);
5432 __pyx_v__dict = __pyx_t_4;
5433 __pyx_t_4 = 0;
5434
5435 /* "(tree fragment)":7
5436 * state = (self.end, self.max_val, self.min_val, self.size, self.start, self.sum_data, self.sum_squares, self.valid_count)
5437 * _dict = getattr(self, '__dict__', None)
5438 * if _dict is not None: # <<<<<<<<<<<<<<
5439 * state += (_dict,)
5440 * use_setstate = True
5441 */
5442 __pyx_t_5 = (__pyx_v__dict != Py_None);
5443 __pyx_t_6 = (__pyx_t_5 != 0);
5444 if (__pyx_t_6) {
5445
5446 /* "(tree fragment)":8
5447 * _dict = getattr(self, '__dict__', None)
5448 * if _dict is not None:
5449 * state += (_dict,) # <<<<<<<<<<<<<<
5450 * use_setstate = True
5451 * else:
5452 */
5453 __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 8, __pyx_L1_error)
5454 __Pyx_GOTREF(__pyx_t_4);
5455 __Pyx_INCREF(__pyx_v__dict);
5456 __Pyx_GIVEREF(__pyx_v__dict);
5457 PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_v__dict);
5458 __pyx_t_3 = PyNumber_InPlaceAdd(__pyx_v_state, __pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 8, __pyx_L1_error)
5459 __Pyx_GOTREF(__pyx_t_3);
5460 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
5461 __Pyx_DECREF_SET(__pyx_v_state, ((PyObject*)__pyx_t_3));
5462 __pyx_t_3 = 0;
5463
5464 /* "(tree fragment)":9
5465 * if _dict is not None:
5466 * state += (_dict,)
5467 * use_setstate = True # <<<<<<<<<<<<<<
5468 * else:
5469 * use_setstate = self.max_val is not None or self.min_val is not None or self.sum_data is not None or self.sum_squares is not None or self.valid_count is not None
5470 */
5471 __pyx_v_use_setstate = 1;
5472
5473 /* "(tree fragment)":7
5474 * state = (self.end, self.max_val, self.min_val, self.size, self.start, self.sum_data, self.sum_squares, self.valid_count)
5475 * _dict = getattr(self, '__dict__', None)
5476 * if _dict is not None: # <<<<<<<<<<<<<<
5477 * state += (_dict,)
5478 * use_setstate = True
5479 */
5480 goto __pyx_L3;
5481 }
5482
5483 /* "(tree fragment)":11
5484 * use_setstate = True
5485 * else:
5486 * use_setstate = self.max_val is not None or self.min_val is not None or self.sum_data is not None or self.sum_squares is not None or self.valid_count is not None # <<<<<<<<<<<<<<
5487 * if use_setstate:
5488 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, None), state
5489 */
5490 /*else*/ {
5491 __pyx_t_5 = (((PyObject *)__pyx_v_self->max_val) != Py_None);
5492 __pyx_t_7 = (__pyx_t_5 != 0);
5493 if (!__pyx_t_7) {
5494 } else {
5495 __pyx_t_6 = __pyx_t_7;
5496 goto __pyx_L4_bool_binop_done;
5497 }
5498 __pyx_t_7 = (((PyObject *)__pyx_v_self->min_val) != Py_None);
5499 __pyx_t_5 = (__pyx_t_7 != 0);
5500 if (!__pyx_t_5) {
5501 } else {
5502 __pyx_t_6 = __pyx_t_5;
5503 goto __pyx_L4_bool_binop_done;
5504 }
5505 __pyx_t_5 = (((PyObject *)__pyx_v_self->sum_data) != Py_None);
5506 __pyx_t_7 = (__pyx_t_5 != 0);
5507 if (!__pyx_t_7) {
5508 } else {
5509 __pyx_t_6 = __pyx_t_7;
5510 goto __pyx_L4_bool_binop_done;
5511 }
5512 __pyx_t_7 = (((PyObject *)__pyx_v_self->sum_squares) != Py_None);
5513 __pyx_t_5 = (__pyx_t_7 != 0);
5514 if (!__pyx_t_5) {
5515 } else {
5516 __pyx_t_6 = __pyx_t_5;
5517 goto __pyx_L4_bool_binop_done;
5518 }
5519 __pyx_t_5 = (((PyObject *)__pyx_v_self->valid_count) != Py_None);
5520 __pyx_t_7 = (__pyx_t_5 != 0);
5521 __pyx_t_6 = __pyx_t_7;
5522 __pyx_L4_bool_binop_done:;
5523 __pyx_v_use_setstate = __pyx_t_6;
5524 }
5525 __pyx_L3:;
5526
5527 /* "(tree fragment)":12
5528 * else:
5529 * use_setstate = self.max_val is not None or self.min_val is not None or self.sum_data is not None or self.sum_squares is not None or self.valid_count is not None
5530 * if use_setstate: # <<<<<<<<<<<<<<
5531 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, None), state
5532 * else:
5533 */
5534 __pyx_t_6 = (__pyx_v_use_setstate != 0);
5535 if (__pyx_t_6) {
5536
5537 /* "(tree fragment)":13
5538 * use_setstate = self.max_val is not None or self.min_val is not None or self.sum_data is not None or self.sum_squares is not None or self.valid_count is not None
5539 * if use_setstate:
5540 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, None), state # <<<<<<<<<<<<<<
5541 * else:
5542 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, state)
5543 */
5544 __Pyx_XDECREF(__pyx_r);
5545 __Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_n_s_pyx_unpickle_SummarizedData); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 13, __pyx_L1_error)
5546 __Pyx_GOTREF(__pyx_t_3);
5547 __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 13, __pyx_L1_error)
5548 __Pyx_GOTREF(__pyx_t_4);
5549 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5550 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5551 PyTuple_SET_ITEM(__pyx_t_4, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5552 __Pyx_INCREF(__pyx_int_259536735);
5553 __Pyx_GIVEREF(__pyx_int_259536735);
5554 PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_int_259536735);
5555 __Pyx_INCREF(Py_None);
5556 __Pyx_GIVEREF(Py_None);
5557 PyTuple_SET_ITEM(__pyx_t_4, 2, Py_None);
5558 __pyx_t_2 = PyTuple_New(3); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 13, __pyx_L1_error)
5559 __Pyx_GOTREF(__pyx_t_2);
5560 __Pyx_GIVEREF(__pyx_t_3);
5561 PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_3);
5562 __Pyx_GIVEREF(__pyx_t_4);
5563 PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_4);
5564 __Pyx_INCREF(__pyx_v_state);
5565 __Pyx_GIVEREF(__pyx_v_state);
5566 PyTuple_SET_ITEM(__pyx_t_2, 2, __pyx_v_state);
5567 __pyx_t_3 = 0;
5568 __pyx_t_4 = 0;
5569 __pyx_r = __pyx_t_2;
5570 __pyx_t_2 = 0;
5571 goto __pyx_L0;
5572
5573 /* "(tree fragment)":12
5574 * else:
5575 * use_setstate = self.max_val is not None or self.min_val is not None or self.sum_data is not None or self.sum_squares is not None or self.valid_count is not None
5576 * if use_setstate: # <<<<<<<<<<<<<<
5577 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, None), state
5578 * else:
5579 */
5580 }
5581
5582 /* "(tree fragment)":15
5583 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, None), state
5584 * else:
5585 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, state) # <<<<<<<<<<<<<<
5586 * def __setstate_cython__(self, __pyx_state):
5587 * __pyx_unpickle_SummarizedData__set_state(self, __pyx_state)
5588 */
5589 /*else*/ {
5590 __Pyx_XDECREF(__pyx_r);
5591 __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_pyx_unpickle_SummarizedData); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 15, __pyx_L1_error)
5592 __Pyx_GOTREF(__pyx_t_2);
5593 __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 15, __pyx_L1_error)
5594 __Pyx_GOTREF(__pyx_t_4);
5595 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5596 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5597 PyTuple_SET_ITEM(__pyx_t_4, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5598 __Pyx_INCREF(__pyx_int_259536735);
5599 __Pyx_GIVEREF(__pyx_int_259536735);
5600 PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_int_259536735);
5601 __Pyx_INCREF(__pyx_v_state);
5602 __Pyx_GIVEREF(__pyx_v_state);
5603 PyTuple_SET_ITEM(__pyx_t_4, 2, __pyx_v_state);
5604 __pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 15, __pyx_L1_error)
5605 __Pyx_GOTREF(__pyx_t_3);
5606 __Pyx_GIVEREF(__pyx_t_2);
5607 PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_2);
5608 __Pyx_GIVEREF(__pyx_t_4);
5609 PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_4);
5610 __pyx_t_2 = 0;
5611 __pyx_t_4 = 0;
5612 __pyx_r = __pyx_t_3;
5613 __pyx_t_3 = 0;
5614 goto __pyx_L0;
5615 }
5616
5617 /* "(tree fragment)":1
5618 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
5619 * cdef tuple state
5620 * cdef object _dict
5621 */
5622
5623 /* function exit code */
5624 __pyx_L1_error:;
5625 __Pyx_XDECREF(__pyx_t_1);
5626 __Pyx_XDECREF(__pyx_t_2);
5627 __Pyx_XDECREF(__pyx_t_3);
5628 __Pyx_XDECREF(__pyx_t_4);
5629 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
5630 __pyx_r = NULL;
5631 __pyx_L0:;
5632 __Pyx_XDECREF(__pyx_v_state);
5633 __Pyx_XDECREF(__pyx_v__dict);
5634 __Pyx_XGIVEREF(__pyx_r);
5635 __Pyx_RefNannyFinishContext();
5636 return __pyx_r;
5637 }
5638
5639 /* "(tree fragment)":16
5640 * else:
5641 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, state)
5642 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
5643 * __pyx_unpickle_SummarizedData__set_state(self, __pyx_state)
5644 */
5645
5646 /* Python wrapper */
5647 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5__setstate_cython__(PyObject * __pyx_v_self,PyObject * __pyx_v___pyx_state)5648 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
5649 PyObject *__pyx_r = 0;
5650 __Pyx_RefNannyDeclarations
5651 __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
5652 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4__setstate_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));
5653
5654 /* function exit code */
5655 __Pyx_RefNannyFinishContext();
5656 return __pyx_r;
5657 }
5658
__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v_self,PyObject * __pyx_v___pyx_state)5659 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_14SummarizedData_4__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
5660 PyObject *__pyx_r = NULL;
5661 __Pyx_RefNannyDeclarations
5662 PyObject *__pyx_t_1 = NULL;
5663 int __pyx_lineno = 0;
5664 const char *__pyx_filename = NULL;
5665 int __pyx_clineno = 0;
5666 __Pyx_RefNannySetupContext("__setstate_cython__", 0);
5667
5668 /* "(tree fragment)":17
5669 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, state)
5670 * def __setstate_cython__(self, __pyx_state):
5671 * __pyx_unpickle_SummarizedData__set_state(self, __pyx_state) # <<<<<<<<<<<<<<
5672 */
5673 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 17, __pyx_L1_error)
5674 __pyx_t_1 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummarizedData__set_state(__pyx_v_self, ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 17, __pyx_L1_error)
5675 __Pyx_GOTREF(__pyx_t_1);
5676 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5677
5678 /* "(tree fragment)":16
5679 * else:
5680 * return __pyx_unpickle_SummarizedData, (type(self), 0xf78375f, state)
5681 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
5682 * __pyx_unpickle_SummarizedData__set_state(self, __pyx_state)
5683 */
5684
5685 /* function exit code */
5686 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
5687 goto __pyx_L0;
5688 __pyx_L1_error:;
5689 __Pyx_XDECREF(__pyx_t_1);
5690 __Pyx_AddTraceback("bx.bbi.bbi_file.SummarizedData.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
5691 __pyx_r = NULL;
5692 __pyx_L0:;
5693 __Pyx_XGIVEREF(__pyx_r);
5694 __Pyx_RefNannyFinishContext();
5695 return __pyx_r;
5696 }
5697
5698 /* "bx/bbi/bbi_file.pyx":113
5699 * Callback for `BBIFile.visit_blocks_in_region`
5700 * """
5701 * cdef handle_block( self, bytes block_data, BBIFile bbi_file ): # <<<<<<<<<<<<<<
5702 * pass
5703 *
5704 */
5705
__pyx_f_2bx_3bbi_8bbi_file_12BlockHandler_handle_block(CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler * __pyx_v_self,CYTHON_UNUSED PyObject * __pyx_v_block_data,CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_bbi_file)5706 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_12BlockHandler_handle_block(CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_block_data, CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_bbi_file) {
5707 PyObject *__pyx_r = NULL;
5708 __Pyx_RefNannyDeclarations
5709 __Pyx_RefNannySetupContext("handle_block", 0);
5710
5711 /* function exit code */
5712 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
5713 __Pyx_XGIVEREF(__pyx_r);
5714 __Pyx_RefNannyFinishContext();
5715 return __pyx_r;
5716 }
5717
5718 /* "(tree fragment)":1
5719 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
5720 * cdef tuple state
5721 * cdef object _dict
5722 */
5723
5724 /* Python wrapper */
5725 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12BlockHandler_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12BlockHandler_1__reduce_cython__(PyObject * __pyx_v_self,CYTHON_UNUSED PyObject * unused)5726 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12BlockHandler_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
5727 PyObject *__pyx_r = 0;
5728 __Pyx_RefNannyDeclarations
5729 __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
5730 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12BlockHandler___reduce_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *)__pyx_v_self));
5731
5732 /* function exit code */
5733 __Pyx_RefNannyFinishContext();
5734 return __pyx_r;
5735 }
5736
__pyx_pf_2bx_3bbi_8bbi_file_12BlockHandler___reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler * __pyx_v_self)5737 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12BlockHandler___reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *__pyx_v_self) {
5738 PyObject *__pyx_v_state = 0;
5739 PyObject *__pyx_v__dict = 0;
5740 int __pyx_v_use_setstate;
5741 PyObject *__pyx_r = NULL;
5742 __Pyx_RefNannyDeclarations
5743 PyObject *__pyx_t_1 = NULL;
5744 int __pyx_t_2;
5745 int __pyx_t_3;
5746 PyObject *__pyx_t_4 = NULL;
5747 PyObject *__pyx_t_5 = NULL;
5748 int __pyx_lineno = 0;
5749 const char *__pyx_filename = NULL;
5750 int __pyx_clineno = 0;
5751 __Pyx_RefNannySetupContext("__reduce_cython__", 0);
5752
5753 /* "(tree fragment)":5
5754 * cdef object _dict
5755 * cdef bint use_setstate
5756 * state = () # <<<<<<<<<<<<<<
5757 * _dict = getattr(self, '__dict__', None)
5758 * if _dict is not None:
5759 */
5760 __Pyx_INCREF(__pyx_empty_tuple);
5761 __pyx_v_state = __pyx_empty_tuple;
5762
5763 /* "(tree fragment)":6
5764 * cdef bint use_setstate
5765 * state = ()
5766 * _dict = getattr(self, '__dict__', None) # <<<<<<<<<<<<<<
5767 * if _dict is not None:
5768 * state += (_dict,)
5769 */
5770 __pyx_t_1 = __Pyx_GetAttr3(((PyObject *)__pyx_v_self), __pyx_n_s_dict, Py_None); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 6, __pyx_L1_error)
5771 __Pyx_GOTREF(__pyx_t_1);
5772 __pyx_v__dict = __pyx_t_1;
5773 __pyx_t_1 = 0;
5774
5775 /* "(tree fragment)":7
5776 * state = ()
5777 * _dict = getattr(self, '__dict__', None)
5778 * if _dict is not None: # <<<<<<<<<<<<<<
5779 * state += (_dict,)
5780 * use_setstate = True
5781 */
5782 __pyx_t_2 = (__pyx_v__dict != Py_None);
5783 __pyx_t_3 = (__pyx_t_2 != 0);
5784 if (__pyx_t_3) {
5785
5786 /* "(tree fragment)":8
5787 * _dict = getattr(self, '__dict__', None)
5788 * if _dict is not None:
5789 * state += (_dict,) # <<<<<<<<<<<<<<
5790 * use_setstate = True
5791 * else:
5792 */
5793 __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 8, __pyx_L1_error)
5794 __Pyx_GOTREF(__pyx_t_1);
5795 __Pyx_INCREF(__pyx_v__dict);
5796 __Pyx_GIVEREF(__pyx_v__dict);
5797 PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_v__dict);
5798 __pyx_t_4 = PyNumber_InPlaceAdd(__pyx_v_state, __pyx_t_1); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 8, __pyx_L1_error)
5799 __Pyx_GOTREF(__pyx_t_4);
5800 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5801 __Pyx_DECREF_SET(__pyx_v_state, ((PyObject*)__pyx_t_4));
5802 __pyx_t_4 = 0;
5803
5804 /* "(tree fragment)":9
5805 * if _dict is not None:
5806 * state += (_dict,)
5807 * use_setstate = True # <<<<<<<<<<<<<<
5808 * else:
5809 * use_setstate = False
5810 */
5811 __pyx_v_use_setstate = 1;
5812
5813 /* "(tree fragment)":7
5814 * state = ()
5815 * _dict = getattr(self, '__dict__', None)
5816 * if _dict is not None: # <<<<<<<<<<<<<<
5817 * state += (_dict,)
5818 * use_setstate = True
5819 */
5820 goto __pyx_L3;
5821 }
5822
5823 /* "(tree fragment)":11
5824 * use_setstate = True
5825 * else:
5826 * use_setstate = False # <<<<<<<<<<<<<<
5827 * if use_setstate:
5828 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, None), state
5829 */
5830 /*else*/ {
5831 __pyx_v_use_setstate = 0;
5832 }
5833 __pyx_L3:;
5834
5835 /* "(tree fragment)":12
5836 * else:
5837 * use_setstate = False
5838 * if use_setstate: # <<<<<<<<<<<<<<
5839 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, None), state
5840 * else:
5841 */
5842 __pyx_t_3 = (__pyx_v_use_setstate != 0);
5843 if (__pyx_t_3) {
5844
5845 /* "(tree fragment)":13
5846 * use_setstate = False
5847 * if use_setstate:
5848 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, None), state # <<<<<<<<<<<<<<
5849 * else:
5850 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, state)
5851 */
5852 __Pyx_XDECREF(__pyx_r);
5853 __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_pyx_unpickle_BlockHandler); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 13, __pyx_L1_error)
5854 __Pyx_GOTREF(__pyx_t_4);
5855 __pyx_t_1 = PyTuple_New(3); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 13, __pyx_L1_error)
5856 __Pyx_GOTREF(__pyx_t_1);
5857 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5858 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5859 PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5860 __Pyx_INCREF(__pyx_int_222419149);
5861 __Pyx_GIVEREF(__pyx_int_222419149);
5862 PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_int_222419149);
5863 __Pyx_INCREF(Py_None);
5864 __Pyx_GIVEREF(Py_None);
5865 PyTuple_SET_ITEM(__pyx_t_1, 2, Py_None);
5866 __pyx_t_5 = PyTuple_New(3); if (unlikely(!__pyx_t_5)) __PYX_ERR(2, 13, __pyx_L1_error)
5867 __Pyx_GOTREF(__pyx_t_5);
5868 __Pyx_GIVEREF(__pyx_t_4);
5869 PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_4);
5870 __Pyx_GIVEREF(__pyx_t_1);
5871 PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_1);
5872 __Pyx_INCREF(__pyx_v_state);
5873 __Pyx_GIVEREF(__pyx_v_state);
5874 PyTuple_SET_ITEM(__pyx_t_5, 2, __pyx_v_state);
5875 __pyx_t_4 = 0;
5876 __pyx_t_1 = 0;
5877 __pyx_r = __pyx_t_5;
5878 __pyx_t_5 = 0;
5879 goto __pyx_L0;
5880
5881 /* "(tree fragment)":12
5882 * else:
5883 * use_setstate = False
5884 * if use_setstate: # <<<<<<<<<<<<<<
5885 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, None), state
5886 * else:
5887 */
5888 }
5889
5890 /* "(tree fragment)":15
5891 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, None), state
5892 * else:
5893 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, state) # <<<<<<<<<<<<<<
5894 * def __setstate_cython__(self, __pyx_state):
5895 * __pyx_unpickle_BlockHandler__set_state(self, __pyx_state)
5896 */
5897 /*else*/ {
5898 __Pyx_XDECREF(__pyx_r);
5899 __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_pyx_unpickle_BlockHandler); if (unlikely(!__pyx_t_5)) __PYX_ERR(2, 15, __pyx_L1_error)
5900 __Pyx_GOTREF(__pyx_t_5);
5901 __pyx_t_1 = PyTuple_New(3); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 15, __pyx_L1_error)
5902 __Pyx_GOTREF(__pyx_t_1);
5903 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5904 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5905 PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
5906 __Pyx_INCREF(__pyx_int_222419149);
5907 __Pyx_GIVEREF(__pyx_int_222419149);
5908 PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_int_222419149);
5909 __Pyx_INCREF(__pyx_v_state);
5910 __Pyx_GIVEREF(__pyx_v_state);
5911 PyTuple_SET_ITEM(__pyx_t_1, 2, __pyx_v_state);
5912 __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 15, __pyx_L1_error)
5913 __Pyx_GOTREF(__pyx_t_4);
5914 __Pyx_GIVEREF(__pyx_t_5);
5915 PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_5);
5916 __Pyx_GIVEREF(__pyx_t_1);
5917 PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_1);
5918 __pyx_t_5 = 0;
5919 __pyx_t_1 = 0;
5920 __pyx_r = __pyx_t_4;
5921 __pyx_t_4 = 0;
5922 goto __pyx_L0;
5923 }
5924
5925 /* "(tree fragment)":1
5926 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
5927 * cdef tuple state
5928 * cdef object _dict
5929 */
5930
5931 /* function exit code */
5932 __pyx_L1_error:;
5933 __Pyx_XDECREF(__pyx_t_1);
5934 __Pyx_XDECREF(__pyx_t_4);
5935 __Pyx_XDECREF(__pyx_t_5);
5936 __Pyx_AddTraceback("bx.bbi.bbi_file.BlockHandler.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
5937 __pyx_r = NULL;
5938 __pyx_L0:;
5939 __Pyx_XDECREF(__pyx_v_state);
5940 __Pyx_XDECREF(__pyx_v__dict);
5941 __Pyx_XGIVEREF(__pyx_r);
5942 __Pyx_RefNannyFinishContext();
5943 return __pyx_r;
5944 }
5945
5946 /* "(tree fragment)":16
5947 * else:
5948 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, state)
5949 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
5950 * __pyx_unpickle_BlockHandler__set_state(self, __pyx_state)
5951 */
5952
5953 /* Python wrapper */
5954 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12BlockHandler_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_12BlockHandler_3__setstate_cython__(PyObject * __pyx_v_self,PyObject * __pyx_v___pyx_state)5955 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_12BlockHandler_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
5956 PyObject *__pyx_r = 0;
5957 __Pyx_RefNannyDeclarations
5958 __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
5959 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_12BlockHandler_2__setstate_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));
5960
5961 /* function exit code */
5962 __Pyx_RefNannyFinishContext();
5963 return __pyx_r;
5964 }
5965
__pyx_pf_2bx_3bbi_8bbi_file_12BlockHandler_2__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler * __pyx_v_self,PyObject * __pyx_v___pyx_state)5966 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_12BlockHandler_2__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
5967 PyObject *__pyx_r = NULL;
5968 __Pyx_RefNannyDeclarations
5969 PyObject *__pyx_t_1 = NULL;
5970 int __pyx_lineno = 0;
5971 const char *__pyx_filename = NULL;
5972 int __pyx_clineno = 0;
5973 __Pyx_RefNannySetupContext("__setstate_cython__", 0);
5974
5975 /* "(tree fragment)":17
5976 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, state)
5977 * def __setstate_cython__(self, __pyx_state):
5978 * __pyx_unpickle_BlockHandler__set_state(self, __pyx_state) # <<<<<<<<<<<<<<
5979 */
5980 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 17, __pyx_L1_error)
5981 __pyx_t_1 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BlockHandler__set_state(__pyx_v_self, ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 17, __pyx_L1_error)
5982 __Pyx_GOTREF(__pyx_t_1);
5983 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
5984
5985 /* "(tree fragment)":16
5986 * else:
5987 * return __pyx_unpickle_BlockHandler, (type(self), 0xd41d8cd, state)
5988 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
5989 * __pyx_unpickle_BlockHandler__set_state(self, __pyx_state)
5990 */
5991
5992 /* function exit code */
5993 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
5994 goto __pyx_L0;
5995 __pyx_L1_error:;
5996 __Pyx_XDECREF(__pyx_t_1);
5997 __Pyx_AddTraceback("bx.bbi.bbi_file.BlockHandler.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
5998 __pyx_r = NULL;
5999 __pyx_L0:;
6000 __Pyx_XGIVEREF(__pyx_r);
6001 __Pyx_RefNannyFinishContext();
6002 return __pyx_r;
6003 }
6004
6005 /* "bx/bbi/bbi_file.pyx":123
6006 * """
6007 *
6008 * def __init__( self, file=None, expected_sig=None, type_name=None ): # <<<<<<<<<<<<<<
6009 * if file is not None:
6010 * self.open( file, expected_sig, type_name )
6011 */
6012
6013 /* Python wrapper */
6014 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_1__init__(PyObject * __pyx_v_self,PyObject * __pyx_args,PyObject * __pyx_kwds)6015 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
6016 PyObject *__pyx_v_file = 0;
6017 PyObject *__pyx_v_expected_sig = 0;
6018 PyObject *__pyx_v_type_name = 0;
6019 int __pyx_lineno = 0;
6020 const char *__pyx_filename = NULL;
6021 int __pyx_clineno = 0;
6022 int __pyx_r;
6023 __Pyx_RefNannyDeclarations
6024 __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
6025 {
6026 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_file,&__pyx_n_s_expected_sig,&__pyx_n_s_type_name,0};
6027 PyObject* values[3] = {0,0,0};
6028 values[0] = ((PyObject *)Py_None);
6029 values[1] = ((PyObject *)Py_None);
6030 values[2] = ((PyObject *)Py_None);
6031 if (unlikely(__pyx_kwds)) {
6032 Py_ssize_t kw_args;
6033 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
6034 switch (pos_args) {
6035 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
6036 CYTHON_FALLTHROUGH;
6037 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
6038 CYTHON_FALLTHROUGH;
6039 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
6040 CYTHON_FALLTHROUGH;
6041 case 0: break;
6042 default: goto __pyx_L5_argtuple_error;
6043 }
6044 kw_args = PyDict_Size(__pyx_kwds);
6045 switch (pos_args) {
6046 case 0:
6047 if (kw_args > 0) {
6048 PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_file);
6049 if (value) { values[0] = value; kw_args--; }
6050 }
6051 CYTHON_FALLTHROUGH;
6052 case 1:
6053 if (kw_args > 0) {
6054 PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_expected_sig);
6055 if (value) { values[1] = value; kw_args--; }
6056 }
6057 CYTHON_FALLTHROUGH;
6058 case 2:
6059 if (kw_args > 0) {
6060 PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_type_name);
6061 if (value) { values[2] = value; kw_args--; }
6062 }
6063 }
6064 if (unlikely(kw_args > 0)) {
6065 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(0, 123, __pyx_L3_error)
6066 }
6067 } else {
6068 switch (PyTuple_GET_SIZE(__pyx_args)) {
6069 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
6070 CYTHON_FALLTHROUGH;
6071 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
6072 CYTHON_FALLTHROUGH;
6073 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
6074 CYTHON_FALLTHROUGH;
6075 case 0: break;
6076 default: goto __pyx_L5_argtuple_error;
6077 }
6078 }
6079 __pyx_v_file = values[0];
6080 __pyx_v_expected_sig = values[1];
6081 __pyx_v_type_name = values[2];
6082 }
6083 goto __pyx_L4_argument_unpacking_done;
6084 __pyx_L5_argtuple_error:;
6085 __Pyx_RaiseArgtupleInvalid("__init__", 0, 0, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 123, __pyx_L3_error)
6086 __pyx_L3_error:;
6087 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
6088 __Pyx_RefNannyFinishContext();
6089 return -1;
6090 __pyx_L4_argument_unpacking_done:;
6091 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile___init__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), __pyx_v_file, __pyx_v_expected_sig, __pyx_v_type_name);
6092
6093 /* function exit code */
6094 __Pyx_RefNannyFinishContext();
6095 return __pyx_r;
6096 }
6097
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile___init__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_file,PyObject * __pyx_v_expected_sig,PyObject * __pyx_v_type_name)6098 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile___init__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_file, PyObject *__pyx_v_expected_sig, PyObject *__pyx_v_type_name) {
6099 int __pyx_r;
6100 __Pyx_RefNannyDeclarations
6101 int __pyx_t_1;
6102 int __pyx_t_2;
6103 PyObject *__pyx_t_3 = NULL;
6104 PyObject *__pyx_t_4 = NULL;
6105 PyObject *__pyx_t_5 = NULL;
6106 int __pyx_t_6;
6107 PyObject *__pyx_t_7 = NULL;
6108 int __pyx_lineno = 0;
6109 const char *__pyx_filename = NULL;
6110 int __pyx_clineno = 0;
6111 __Pyx_RefNannySetupContext("__init__", 0);
6112
6113 /* "bx/bbi/bbi_file.pyx":124
6114 *
6115 * def __init__( self, file=None, expected_sig=None, type_name=None ):
6116 * if file is not None: # <<<<<<<<<<<<<<
6117 * self.open( file, expected_sig, type_name )
6118 *
6119 */
6120 __pyx_t_1 = (__pyx_v_file != Py_None);
6121 __pyx_t_2 = (__pyx_t_1 != 0);
6122 if (__pyx_t_2) {
6123
6124 /* "bx/bbi/bbi_file.pyx":125
6125 * def __init__( self, file=None, expected_sig=None, type_name=None ):
6126 * if file is not None:
6127 * self.open( file, expected_sig, type_name ) # <<<<<<<<<<<<<<
6128 *
6129 * def open( self, file, expected_sig, type_name ):
6130 */
6131 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_open); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 125, __pyx_L1_error)
6132 __Pyx_GOTREF(__pyx_t_4);
6133 __pyx_t_5 = NULL;
6134 __pyx_t_6 = 0;
6135 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
6136 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
6137 if (likely(__pyx_t_5)) {
6138 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
6139 __Pyx_INCREF(__pyx_t_5);
6140 __Pyx_INCREF(function);
6141 __Pyx_DECREF_SET(__pyx_t_4, function);
6142 __pyx_t_6 = 1;
6143 }
6144 }
6145 #if CYTHON_FAST_PYCALL
6146 if (PyFunction_Check(__pyx_t_4)) {
6147 PyObject *__pyx_temp[4] = {__pyx_t_5, __pyx_v_file, __pyx_v_expected_sig, __pyx_v_type_name};
6148 __pyx_t_3 = __Pyx_PyFunction_FastCall(__pyx_t_4, __pyx_temp+1-__pyx_t_6, 3+__pyx_t_6); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 125, __pyx_L1_error)
6149 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
6150 __Pyx_GOTREF(__pyx_t_3);
6151 } else
6152 #endif
6153 #if CYTHON_FAST_PYCCALL
6154 if (__Pyx_PyFastCFunction_Check(__pyx_t_4)) {
6155 PyObject *__pyx_temp[4] = {__pyx_t_5, __pyx_v_file, __pyx_v_expected_sig, __pyx_v_type_name};
6156 __pyx_t_3 = __Pyx_PyCFunction_FastCall(__pyx_t_4, __pyx_temp+1-__pyx_t_6, 3+__pyx_t_6); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 125, __pyx_L1_error)
6157 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
6158 __Pyx_GOTREF(__pyx_t_3);
6159 } else
6160 #endif
6161 {
6162 __pyx_t_7 = PyTuple_New(3+__pyx_t_6); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 125, __pyx_L1_error)
6163 __Pyx_GOTREF(__pyx_t_7);
6164 if (__pyx_t_5) {
6165 __Pyx_GIVEREF(__pyx_t_5); PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_5); __pyx_t_5 = NULL;
6166 }
6167 __Pyx_INCREF(__pyx_v_file);
6168 __Pyx_GIVEREF(__pyx_v_file);
6169 PyTuple_SET_ITEM(__pyx_t_7, 0+__pyx_t_6, __pyx_v_file);
6170 __Pyx_INCREF(__pyx_v_expected_sig);
6171 __Pyx_GIVEREF(__pyx_v_expected_sig);
6172 PyTuple_SET_ITEM(__pyx_t_7, 1+__pyx_t_6, __pyx_v_expected_sig);
6173 __Pyx_INCREF(__pyx_v_type_name);
6174 __Pyx_GIVEREF(__pyx_v_type_name);
6175 PyTuple_SET_ITEM(__pyx_t_7, 2+__pyx_t_6, __pyx_v_type_name);
6176 __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_7, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 125, __pyx_L1_error)
6177 __Pyx_GOTREF(__pyx_t_3);
6178 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
6179 }
6180 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
6181 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6182
6183 /* "bx/bbi/bbi_file.pyx":124
6184 *
6185 * def __init__( self, file=None, expected_sig=None, type_name=None ):
6186 * if file is not None: # <<<<<<<<<<<<<<
6187 * self.open( file, expected_sig, type_name )
6188 *
6189 */
6190 }
6191
6192 /* "bx/bbi/bbi_file.pyx":123
6193 * """
6194 *
6195 * def __init__( self, file=None, expected_sig=None, type_name=None ): # <<<<<<<<<<<<<<
6196 * if file is not None:
6197 * self.open( file, expected_sig, type_name )
6198 */
6199
6200 /* function exit code */
6201 __pyx_r = 0;
6202 goto __pyx_L0;
6203 __pyx_L1_error:;
6204 __Pyx_XDECREF(__pyx_t_3);
6205 __Pyx_XDECREF(__pyx_t_4);
6206 __Pyx_XDECREF(__pyx_t_5);
6207 __Pyx_XDECREF(__pyx_t_7);
6208 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
6209 __pyx_r = -1;
6210 __pyx_L0:;
6211 __Pyx_RefNannyFinishContext();
6212 return __pyx_r;
6213 }
6214
6215 /* "bx/bbi/bbi_file.pyx":127
6216 * self.open( file, expected_sig, type_name )
6217 *
6218 * def open( self, file, expected_sig, type_name ): # <<<<<<<<<<<<<<
6219 * """
6220 * Initialize from an existing bbi file, signature (magic) must be passed
6221 */
6222
6223 /* Python wrapper */
6224 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_3open(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
6225 static char __pyx_doc_2bx_3bbi_8bbi_file_7BBIFile_2open[] = "\n Initialize from an existing bbi file, signature (magic) must be passed\n in since this is generic. \n ";
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_3open(PyObject * __pyx_v_self,PyObject * __pyx_args,PyObject * __pyx_kwds)6226 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_3open(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
6227 PyObject *__pyx_v_file = 0;
6228 PyObject *__pyx_v_expected_sig = 0;
6229 CYTHON_UNUSED PyObject *__pyx_v_type_name = 0;
6230 int __pyx_lineno = 0;
6231 const char *__pyx_filename = NULL;
6232 int __pyx_clineno = 0;
6233 PyObject *__pyx_r = 0;
6234 __Pyx_RefNannyDeclarations
6235 __Pyx_RefNannySetupContext("open (wrapper)", 0);
6236 {
6237 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_file,&__pyx_n_s_expected_sig,&__pyx_n_s_type_name,0};
6238 PyObject* values[3] = {0,0,0};
6239 if (unlikely(__pyx_kwds)) {
6240 Py_ssize_t kw_args;
6241 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
6242 switch (pos_args) {
6243 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
6244 CYTHON_FALLTHROUGH;
6245 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
6246 CYTHON_FALLTHROUGH;
6247 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
6248 CYTHON_FALLTHROUGH;
6249 case 0: break;
6250 default: goto __pyx_L5_argtuple_error;
6251 }
6252 kw_args = PyDict_Size(__pyx_kwds);
6253 switch (pos_args) {
6254 case 0:
6255 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_file)) != 0)) kw_args--;
6256 else goto __pyx_L5_argtuple_error;
6257 CYTHON_FALLTHROUGH;
6258 case 1:
6259 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_expected_sig)) != 0)) kw_args--;
6260 else {
6261 __Pyx_RaiseArgtupleInvalid("open", 1, 3, 3, 1); __PYX_ERR(0, 127, __pyx_L3_error)
6262 }
6263 CYTHON_FALLTHROUGH;
6264 case 2:
6265 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_type_name)) != 0)) kw_args--;
6266 else {
6267 __Pyx_RaiseArgtupleInvalid("open", 1, 3, 3, 2); __PYX_ERR(0, 127, __pyx_L3_error)
6268 }
6269 }
6270 if (unlikely(kw_args > 0)) {
6271 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "open") < 0)) __PYX_ERR(0, 127, __pyx_L3_error)
6272 }
6273 } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
6274 goto __pyx_L5_argtuple_error;
6275 } else {
6276 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
6277 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
6278 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
6279 }
6280 __pyx_v_file = values[0];
6281 __pyx_v_expected_sig = values[1];
6282 __pyx_v_type_name = values[2];
6283 }
6284 goto __pyx_L4_argument_unpacking_done;
6285 __pyx_L5_argtuple_error:;
6286 __Pyx_RaiseArgtupleInvalid("open", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 127, __pyx_L3_error)
6287 __pyx_L3_error:;
6288 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.open", __pyx_clineno, __pyx_lineno, __pyx_filename);
6289 __Pyx_RefNannyFinishContext();
6290 return NULL;
6291 __pyx_L4_argument_unpacking_done:;
6292 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_2open(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), __pyx_v_file, __pyx_v_expected_sig, __pyx_v_type_name);
6293
6294 /* function exit code */
6295 __Pyx_RefNannyFinishContext();
6296 return __pyx_r;
6297 }
6298
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_2open(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_file,PyObject * __pyx_v_expected_sig,CYTHON_UNUSED PyObject * __pyx_v_type_name)6299 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_2open(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_file, PyObject *__pyx_v_expected_sig, CYTHON_UNUSED PyObject *__pyx_v_type_name) {
6300 PyObject *__pyx_v_reader = NULL;
6301 CYTHON_UNUSED long __pyx_v_i;
6302 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_level = NULL;
6303 PyObject *__pyx_r = NULL;
6304 __Pyx_RefNannyDeclarations
6305 int __pyx_t_1;
6306 PyObject *__pyx_t_2 = NULL;
6307 PyObject *__pyx_t_3 = NULL;
6308 PyObject *__pyx_t_4 = NULL;
6309 int __pyx_t_5;
6310 PyObject *__pyx_t_6 = NULL;
6311 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_7;
6312 __pyx_t_2bx_3bbi_5types_boolean __pyx_t_8;
6313 __pyx_t_2bx_3bbi_5types_bits16 __pyx_t_9;
6314 __pyx_t_2bx_3bbi_5types_bits64 __pyx_t_10;
6315 int __pyx_t_11;
6316 int __pyx_lineno = 0;
6317 const char *__pyx_filename = NULL;
6318 int __pyx_clineno = 0;
6319 __Pyx_RefNannySetupContext("open", 0);
6320
6321 /* "bx/bbi/bbi_file.pyx":132
6322 * in since this is generic.
6323 * """
6324 * assert expected_sig is not None # <<<<<<<<<<<<<<
6325 * self.file = file
6326 * # Open the file in a BinaryFileReader, handles magic and byteswapping
6327 */
6328 #ifndef CYTHON_WITHOUT_ASSERTIONS
6329 if (unlikely(!Py_OptimizeFlag)) {
6330 __pyx_t_1 = (__pyx_v_expected_sig != Py_None);
6331 if (unlikely(!(__pyx_t_1 != 0))) {
6332 PyErr_SetNone(PyExc_AssertionError);
6333 __PYX_ERR(0, 132, __pyx_L1_error)
6334 }
6335 }
6336 #endif
6337
6338 /* "bx/bbi/bbi_file.pyx":133
6339 * """
6340 * assert expected_sig is not None
6341 * self.file = file # <<<<<<<<<<<<<<
6342 * # Open the file in a BinaryFileReader, handles magic and byteswapping
6343 * self.reader = reader = BinaryFileReader( file, expected_sig )
6344 */
6345 __Pyx_INCREF(__pyx_v_file);
6346 __Pyx_GIVEREF(__pyx_v_file);
6347 __Pyx_GOTREF(__pyx_v_self->file);
6348 __Pyx_DECREF(__pyx_v_self->file);
6349 __pyx_v_self->file = __pyx_v_file;
6350
6351 /* "bx/bbi/bbi_file.pyx":135
6352 * self.file = file
6353 * # Open the file in a BinaryFileReader, handles magic and byteswapping
6354 * self.reader = reader = BinaryFileReader( file, expected_sig ) # <<<<<<<<<<<<<<
6355 * self.magic = expected_sig
6356 * self.is_byteswapped = self.reader.byteswap_needed
6357 */
6358 __Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_n_s_BinaryFileReader); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 135, __pyx_L1_error)
6359 __Pyx_GOTREF(__pyx_t_3);
6360 __pyx_t_4 = NULL;
6361 __pyx_t_5 = 0;
6362 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_3))) {
6363 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_3);
6364 if (likely(__pyx_t_4)) {
6365 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6366 __Pyx_INCREF(__pyx_t_4);
6367 __Pyx_INCREF(function);
6368 __Pyx_DECREF_SET(__pyx_t_3, function);
6369 __pyx_t_5 = 1;
6370 }
6371 }
6372 #if CYTHON_FAST_PYCALL
6373 if (PyFunction_Check(__pyx_t_3)) {
6374 PyObject *__pyx_temp[3] = {__pyx_t_4, __pyx_v_file, __pyx_v_expected_sig};
6375 __pyx_t_2 = __Pyx_PyFunction_FastCall(__pyx_t_3, __pyx_temp+1-__pyx_t_5, 2+__pyx_t_5); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 135, __pyx_L1_error)
6376 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
6377 __Pyx_GOTREF(__pyx_t_2);
6378 } else
6379 #endif
6380 #if CYTHON_FAST_PYCCALL
6381 if (__Pyx_PyFastCFunction_Check(__pyx_t_3)) {
6382 PyObject *__pyx_temp[3] = {__pyx_t_4, __pyx_v_file, __pyx_v_expected_sig};
6383 __pyx_t_2 = __Pyx_PyCFunction_FastCall(__pyx_t_3, __pyx_temp+1-__pyx_t_5, 2+__pyx_t_5); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 135, __pyx_L1_error)
6384 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
6385 __Pyx_GOTREF(__pyx_t_2);
6386 } else
6387 #endif
6388 {
6389 __pyx_t_6 = PyTuple_New(2+__pyx_t_5); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 135, __pyx_L1_error)
6390 __Pyx_GOTREF(__pyx_t_6);
6391 if (__pyx_t_4) {
6392 __Pyx_GIVEREF(__pyx_t_4); PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_t_4); __pyx_t_4 = NULL;
6393 }
6394 __Pyx_INCREF(__pyx_v_file);
6395 __Pyx_GIVEREF(__pyx_v_file);
6396 PyTuple_SET_ITEM(__pyx_t_6, 0+__pyx_t_5, __pyx_v_file);
6397 __Pyx_INCREF(__pyx_v_expected_sig);
6398 __Pyx_GIVEREF(__pyx_v_expected_sig);
6399 PyTuple_SET_ITEM(__pyx_t_6, 1+__pyx_t_5, __pyx_v_expected_sig);
6400 __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_6, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 135, __pyx_L1_error)
6401 __Pyx_GOTREF(__pyx_t_2);
6402 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
6403 }
6404 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6405 __Pyx_INCREF(__pyx_t_2);
6406 __Pyx_GIVEREF(__pyx_t_2);
6407 __Pyx_GOTREF(__pyx_v_self->reader);
6408 __Pyx_DECREF(__pyx_v_self->reader);
6409 __pyx_v_self->reader = __pyx_t_2;
6410 __Pyx_INCREF(__pyx_t_2);
6411 __pyx_v_reader = __pyx_t_2;
6412 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6413
6414 /* "bx/bbi/bbi_file.pyx":136
6415 * # Open the file in a BinaryFileReader, handles magic and byteswapping
6416 * self.reader = reader = BinaryFileReader( file, expected_sig )
6417 * self.magic = expected_sig # <<<<<<<<<<<<<<
6418 * self.is_byteswapped = self.reader.byteswap_needed
6419 * # Read header stuff
6420 */
6421 __pyx_t_7 = __Pyx_PyInt_As_unsigned_int(__pyx_v_expected_sig); if (unlikely((__pyx_t_7 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 136, __pyx_L1_error)
6422 __pyx_v_self->magic = __pyx_t_7;
6423
6424 /* "bx/bbi/bbi_file.pyx":137
6425 * self.reader = reader = BinaryFileReader( file, expected_sig )
6426 * self.magic = expected_sig
6427 * self.is_byteswapped = self.reader.byteswap_needed # <<<<<<<<<<<<<<
6428 * # Read header stuff
6429 * self.version = reader.read_uint16()
6430 */
6431 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self->reader, __pyx_n_s_byteswap_needed); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 137, __pyx_L1_error)
6432 __Pyx_GOTREF(__pyx_t_2);
6433 __pyx_t_8 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely((__pyx_t_8 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 137, __pyx_L1_error)
6434 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6435 __pyx_v_self->is_byteswapped = __pyx_t_8;
6436
6437 /* "bx/bbi/bbi_file.pyx":139
6438 * self.is_byteswapped = self.reader.byteswap_needed
6439 * # Read header stuff
6440 * self.version = reader.read_uint16() # <<<<<<<<<<<<<<
6441 * self.zoom_levels = reader.read_uint16()
6442 * self.chrom_tree_offset = reader.read_uint64()
6443 */
6444 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint16); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 139, __pyx_L1_error)
6445 __Pyx_GOTREF(__pyx_t_3);
6446 __pyx_t_6 = NULL;
6447 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6448 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6449 if (likely(__pyx_t_6)) {
6450 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6451 __Pyx_INCREF(__pyx_t_6);
6452 __Pyx_INCREF(function);
6453 __Pyx_DECREF_SET(__pyx_t_3, function);
6454 }
6455 }
6456 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6457 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6458 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 139, __pyx_L1_error)
6459 __Pyx_GOTREF(__pyx_t_2);
6460 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6461 __pyx_t_9 = __Pyx_PyInt_As_unsigned_short(__pyx_t_2); if (unlikely((__pyx_t_9 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(0, 139, __pyx_L1_error)
6462 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6463 __pyx_v_self->version = __pyx_t_9;
6464
6465 /* "bx/bbi/bbi_file.pyx":140
6466 * # Read header stuff
6467 * self.version = reader.read_uint16()
6468 * self.zoom_levels = reader.read_uint16() # <<<<<<<<<<<<<<
6469 * self.chrom_tree_offset = reader.read_uint64()
6470 * self.unzoomed_data_offset = reader.read_uint64()
6471 */
6472 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint16); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 140, __pyx_L1_error)
6473 __Pyx_GOTREF(__pyx_t_3);
6474 __pyx_t_6 = NULL;
6475 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6476 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6477 if (likely(__pyx_t_6)) {
6478 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6479 __Pyx_INCREF(__pyx_t_6);
6480 __Pyx_INCREF(function);
6481 __Pyx_DECREF_SET(__pyx_t_3, function);
6482 }
6483 }
6484 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6485 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6486 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 140, __pyx_L1_error)
6487 __Pyx_GOTREF(__pyx_t_2);
6488 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6489 __pyx_t_9 = __Pyx_PyInt_As_unsigned_short(__pyx_t_2); if (unlikely((__pyx_t_9 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(0, 140, __pyx_L1_error)
6490 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6491 __pyx_v_self->zoom_levels = __pyx_t_9;
6492
6493 /* "bx/bbi/bbi_file.pyx":141
6494 * self.version = reader.read_uint16()
6495 * self.zoom_levels = reader.read_uint16()
6496 * self.chrom_tree_offset = reader.read_uint64() # <<<<<<<<<<<<<<
6497 * self.unzoomed_data_offset = reader.read_uint64()
6498 * self.unzoomed_index_offset = reader.read_uint64()
6499 */
6500 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint64); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 141, __pyx_L1_error)
6501 __Pyx_GOTREF(__pyx_t_3);
6502 __pyx_t_6 = NULL;
6503 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6504 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6505 if (likely(__pyx_t_6)) {
6506 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6507 __Pyx_INCREF(__pyx_t_6);
6508 __Pyx_INCREF(function);
6509 __Pyx_DECREF_SET(__pyx_t_3, function);
6510 }
6511 }
6512 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6513 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6514 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 141, __pyx_L1_error)
6515 __Pyx_GOTREF(__pyx_t_2);
6516 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6517 __pyx_t_10 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_2); if (unlikely((__pyx_t_10 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(0, 141, __pyx_L1_error)
6518 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6519 __pyx_v_self->chrom_tree_offset = __pyx_t_10;
6520
6521 /* "bx/bbi/bbi_file.pyx":142
6522 * self.zoom_levels = reader.read_uint16()
6523 * self.chrom_tree_offset = reader.read_uint64()
6524 * self.unzoomed_data_offset = reader.read_uint64() # <<<<<<<<<<<<<<
6525 * self.unzoomed_index_offset = reader.read_uint64()
6526 * self.field_count = reader.read_uint16()
6527 */
6528 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint64); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 142, __pyx_L1_error)
6529 __Pyx_GOTREF(__pyx_t_3);
6530 __pyx_t_6 = NULL;
6531 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6532 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6533 if (likely(__pyx_t_6)) {
6534 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6535 __Pyx_INCREF(__pyx_t_6);
6536 __Pyx_INCREF(function);
6537 __Pyx_DECREF_SET(__pyx_t_3, function);
6538 }
6539 }
6540 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6541 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6542 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 142, __pyx_L1_error)
6543 __Pyx_GOTREF(__pyx_t_2);
6544 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6545 __pyx_t_10 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_2); if (unlikely((__pyx_t_10 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(0, 142, __pyx_L1_error)
6546 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6547 __pyx_v_self->unzoomed_data_offset = __pyx_t_10;
6548
6549 /* "bx/bbi/bbi_file.pyx":143
6550 * self.chrom_tree_offset = reader.read_uint64()
6551 * self.unzoomed_data_offset = reader.read_uint64()
6552 * self.unzoomed_index_offset = reader.read_uint64() # <<<<<<<<<<<<<<
6553 * self.field_count = reader.read_uint16()
6554 * self.defined_field_count = reader.read_uint16()
6555 */
6556 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint64); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 143, __pyx_L1_error)
6557 __Pyx_GOTREF(__pyx_t_3);
6558 __pyx_t_6 = NULL;
6559 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6560 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6561 if (likely(__pyx_t_6)) {
6562 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6563 __Pyx_INCREF(__pyx_t_6);
6564 __Pyx_INCREF(function);
6565 __Pyx_DECREF_SET(__pyx_t_3, function);
6566 }
6567 }
6568 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6569 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6570 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 143, __pyx_L1_error)
6571 __Pyx_GOTREF(__pyx_t_2);
6572 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6573 __pyx_t_10 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_2); if (unlikely((__pyx_t_10 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(0, 143, __pyx_L1_error)
6574 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6575 __pyx_v_self->unzoomed_index_offset = __pyx_t_10;
6576
6577 /* "bx/bbi/bbi_file.pyx":144
6578 * self.unzoomed_data_offset = reader.read_uint64()
6579 * self.unzoomed_index_offset = reader.read_uint64()
6580 * self.field_count = reader.read_uint16() # <<<<<<<<<<<<<<
6581 * self.defined_field_count = reader.read_uint16()
6582 * self.as_offset = reader.read_uint64()
6583 */
6584 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint16); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 144, __pyx_L1_error)
6585 __Pyx_GOTREF(__pyx_t_3);
6586 __pyx_t_6 = NULL;
6587 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6588 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6589 if (likely(__pyx_t_6)) {
6590 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6591 __Pyx_INCREF(__pyx_t_6);
6592 __Pyx_INCREF(function);
6593 __Pyx_DECREF_SET(__pyx_t_3, function);
6594 }
6595 }
6596 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6597 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6598 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 144, __pyx_L1_error)
6599 __Pyx_GOTREF(__pyx_t_2);
6600 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6601 __pyx_t_9 = __Pyx_PyInt_As_unsigned_short(__pyx_t_2); if (unlikely((__pyx_t_9 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(0, 144, __pyx_L1_error)
6602 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6603 __pyx_v_self->field_count = __pyx_t_9;
6604
6605 /* "bx/bbi/bbi_file.pyx":145
6606 * self.unzoomed_index_offset = reader.read_uint64()
6607 * self.field_count = reader.read_uint16()
6608 * self.defined_field_count = reader.read_uint16() # <<<<<<<<<<<<<<
6609 * self.as_offset = reader.read_uint64()
6610 * self.total_summary_offset = reader.read_uint64()
6611 */
6612 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint16); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 145, __pyx_L1_error)
6613 __Pyx_GOTREF(__pyx_t_3);
6614 __pyx_t_6 = NULL;
6615 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6616 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6617 if (likely(__pyx_t_6)) {
6618 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6619 __Pyx_INCREF(__pyx_t_6);
6620 __Pyx_INCREF(function);
6621 __Pyx_DECREF_SET(__pyx_t_3, function);
6622 }
6623 }
6624 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6625 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6626 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 145, __pyx_L1_error)
6627 __Pyx_GOTREF(__pyx_t_2);
6628 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6629 __pyx_t_9 = __Pyx_PyInt_As_unsigned_short(__pyx_t_2); if (unlikely((__pyx_t_9 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(0, 145, __pyx_L1_error)
6630 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6631 __pyx_v_self->defined_field_count = __pyx_t_9;
6632
6633 /* "bx/bbi/bbi_file.pyx":146
6634 * self.field_count = reader.read_uint16()
6635 * self.defined_field_count = reader.read_uint16()
6636 * self.as_offset = reader.read_uint64() # <<<<<<<<<<<<<<
6637 * self.total_summary_offset = reader.read_uint64()
6638 * self.uncompress_buf_size = reader.read_uint32()
6639 */
6640 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint64); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 146, __pyx_L1_error)
6641 __Pyx_GOTREF(__pyx_t_3);
6642 __pyx_t_6 = NULL;
6643 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6644 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6645 if (likely(__pyx_t_6)) {
6646 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6647 __Pyx_INCREF(__pyx_t_6);
6648 __Pyx_INCREF(function);
6649 __Pyx_DECREF_SET(__pyx_t_3, function);
6650 }
6651 }
6652 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6653 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6654 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 146, __pyx_L1_error)
6655 __Pyx_GOTREF(__pyx_t_2);
6656 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6657 __pyx_t_10 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_2); if (unlikely((__pyx_t_10 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(0, 146, __pyx_L1_error)
6658 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6659 __pyx_v_self->as_offset = __pyx_t_10;
6660
6661 /* "bx/bbi/bbi_file.pyx":147
6662 * self.defined_field_count = reader.read_uint16()
6663 * self.as_offset = reader.read_uint64()
6664 * self.total_summary_offset = reader.read_uint64() # <<<<<<<<<<<<<<
6665 * self.uncompress_buf_size = reader.read_uint32()
6666 * # Skip reserved
6667 */
6668 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint64); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 147, __pyx_L1_error)
6669 __Pyx_GOTREF(__pyx_t_3);
6670 __pyx_t_6 = NULL;
6671 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6672 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6673 if (likely(__pyx_t_6)) {
6674 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6675 __Pyx_INCREF(__pyx_t_6);
6676 __Pyx_INCREF(function);
6677 __Pyx_DECREF_SET(__pyx_t_3, function);
6678 }
6679 }
6680 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6681 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6682 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 147, __pyx_L1_error)
6683 __Pyx_GOTREF(__pyx_t_2);
6684 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6685 __pyx_t_10 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_2); if (unlikely((__pyx_t_10 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(0, 147, __pyx_L1_error)
6686 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6687 __pyx_v_self->total_summary_offset = __pyx_t_10;
6688
6689 /* "bx/bbi/bbi_file.pyx":148
6690 * self.as_offset = reader.read_uint64()
6691 * self.total_summary_offset = reader.read_uint64()
6692 * self.uncompress_buf_size = reader.read_uint32() # <<<<<<<<<<<<<<
6693 * # Skip reserved
6694 * reader.seek( 64 )
6695 */
6696 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint32); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 148, __pyx_L1_error)
6697 __Pyx_GOTREF(__pyx_t_3);
6698 __pyx_t_6 = NULL;
6699 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6700 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6701 if (likely(__pyx_t_6)) {
6702 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6703 __Pyx_INCREF(__pyx_t_6);
6704 __Pyx_INCREF(function);
6705 __Pyx_DECREF_SET(__pyx_t_3, function);
6706 }
6707 }
6708 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6709 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6710 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 148, __pyx_L1_error)
6711 __Pyx_GOTREF(__pyx_t_2);
6712 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6713 __pyx_t_7 = __Pyx_PyInt_As_unsigned_int(__pyx_t_2); if (unlikely((__pyx_t_7 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 148, __pyx_L1_error)
6714 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6715 __pyx_v_self->uncompress_buf_size = __pyx_t_7;
6716
6717 /* "bx/bbi/bbi_file.pyx":150
6718 * self.uncompress_buf_size = reader.read_uint32()
6719 * # Skip reserved
6720 * reader.seek( 64 ) # <<<<<<<<<<<<<<
6721 * # Read zoom headers
6722 * self.level_list = []
6723 */
6724 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_seek); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 150, __pyx_L1_error)
6725 __Pyx_GOTREF(__pyx_t_3);
6726 __pyx_t_6 = NULL;
6727 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6728 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6729 if (likely(__pyx_t_6)) {
6730 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6731 __Pyx_INCREF(__pyx_t_6);
6732 __Pyx_INCREF(function);
6733 __Pyx_DECREF_SET(__pyx_t_3, function);
6734 }
6735 }
6736 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_3, __pyx_t_6, __pyx_int_64) : __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_int_64);
6737 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6738 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 150, __pyx_L1_error)
6739 __Pyx_GOTREF(__pyx_t_2);
6740 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6741 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6742
6743 /* "bx/bbi/bbi_file.pyx":152
6744 * reader.seek( 64 )
6745 * # Read zoom headers
6746 * self.level_list = [] # <<<<<<<<<<<<<<
6747 * for i from 0 <= i < self.zoom_levels:
6748 * level = ZoomLevel()
6749 */
6750 __pyx_t_2 = PyList_New(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 152, __pyx_L1_error)
6751 __Pyx_GOTREF(__pyx_t_2);
6752 __Pyx_GIVEREF(__pyx_t_2);
6753 __Pyx_GOTREF(__pyx_v_self->level_list);
6754 __Pyx_DECREF(__pyx_v_self->level_list);
6755 __pyx_v_self->level_list = __pyx_t_2;
6756 __pyx_t_2 = 0;
6757
6758 /* "bx/bbi/bbi_file.pyx":153
6759 * # Read zoom headers
6760 * self.level_list = []
6761 * for i from 0 <= i < self.zoom_levels: # <<<<<<<<<<<<<<
6762 * level = ZoomLevel()
6763 * level.bbi_file = self
6764 */
6765 __pyx_t_9 = __pyx_v_self->zoom_levels;
6766 for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_9; __pyx_v_i++) {
6767
6768 /* "bx/bbi/bbi_file.pyx":154
6769 * self.level_list = []
6770 * for i from 0 <= i < self.zoom_levels:
6771 * level = ZoomLevel() # <<<<<<<<<<<<<<
6772 * level.bbi_file = self
6773 * level.reduction_level = reader.read_uint32()
6774 */
6775 __pyx_t_2 = __Pyx_PyObject_CallNoArg(((PyObject *)__pyx_ptype_2bx_3bbi_8bbi_file_ZoomLevel)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 154, __pyx_L1_error)
6776 __Pyx_GOTREF(__pyx_t_2);
6777 __Pyx_XDECREF_SET(__pyx_v_level, ((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_t_2));
6778 __pyx_t_2 = 0;
6779
6780 /* "bx/bbi/bbi_file.pyx":155
6781 * for i from 0 <= i < self.zoom_levels:
6782 * level = ZoomLevel()
6783 * level.bbi_file = self # <<<<<<<<<<<<<<
6784 * level.reduction_level = reader.read_uint32()
6785 * level.reserved = reader.read_uint32()
6786 */
6787 __Pyx_INCREF(((PyObject *)__pyx_v_self));
6788 __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
6789 __Pyx_GOTREF(__pyx_v_level->bbi_file);
6790 __Pyx_DECREF(((PyObject *)__pyx_v_level->bbi_file));
6791 __pyx_v_level->bbi_file = __pyx_v_self;
6792
6793 /* "bx/bbi/bbi_file.pyx":156
6794 * level = ZoomLevel()
6795 * level.bbi_file = self
6796 * level.reduction_level = reader.read_uint32() # <<<<<<<<<<<<<<
6797 * level.reserved = reader.read_uint32()
6798 * level.data_offset = reader.read_uint64()
6799 */
6800 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint32); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 156, __pyx_L1_error)
6801 __Pyx_GOTREF(__pyx_t_3);
6802 __pyx_t_6 = NULL;
6803 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6804 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6805 if (likely(__pyx_t_6)) {
6806 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6807 __Pyx_INCREF(__pyx_t_6);
6808 __Pyx_INCREF(function);
6809 __Pyx_DECREF_SET(__pyx_t_3, function);
6810 }
6811 }
6812 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6813 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6814 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 156, __pyx_L1_error)
6815 __Pyx_GOTREF(__pyx_t_2);
6816 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6817 __pyx_t_7 = __Pyx_PyInt_As_unsigned_int(__pyx_t_2); if (unlikely((__pyx_t_7 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 156, __pyx_L1_error)
6818 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6819 __pyx_v_level->reduction_level = __pyx_t_7;
6820
6821 /* "bx/bbi/bbi_file.pyx":157
6822 * level.bbi_file = self
6823 * level.reduction_level = reader.read_uint32()
6824 * level.reserved = reader.read_uint32() # <<<<<<<<<<<<<<
6825 * level.data_offset = reader.read_uint64()
6826 * level.index_offset = reader.read_uint64()
6827 */
6828 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint32); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 157, __pyx_L1_error)
6829 __Pyx_GOTREF(__pyx_t_3);
6830 __pyx_t_6 = NULL;
6831 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6832 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6833 if (likely(__pyx_t_6)) {
6834 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6835 __Pyx_INCREF(__pyx_t_6);
6836 __Pyx_INCREF(function);
6837 __Pyx_DECREF_SET(__pyx_t_3, function);
6838 }
6839 }
6840 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6841 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6842 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 157, __pyx_L1_error)
6843 __Pyx_GOTREF(__pyx_t_2);
6844 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6845 __pyx_t_7 = __Pyx_PyInt_As_unsigned_int(__pyx_t_2); if (unlikely((__pyx_t_7 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 157, __pyx_L1_error)
6846 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6847 __pyx_v_level->reserved = __pyx_t_7;
6848
6849 /* "bx/bbi/bbi_file.pyx":158
6850 * level.reduction_level = reader.read_uint32()
6851 * level.reserved = reader.read_uint32()
6852 * level.data_offset = reader.read_uint64() # <<<<<<<<<<<<<<
6853 * level.index_offset = reader.read_uint64()
6854 * self.level_list.append( level )
6855 */
6856 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint64); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 158, __pyx_L1_error)
6857 __Pyx_GOTREF(__pyx_t_3);
6858 __pyx_t_6 = NULL;
6859 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6860 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6861 if (likely(__pyx_t_6)) {
6862 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6863 __Pyx_INCREF(__pyx_t_6);
6864 __Pyx_INCREF(function);
6865 __Pyx_DECREF_SET(__pyx_t_3, function);
6866 }
6867 }
6868 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6869 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6870 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 158, __pyx_L1_error)
6871 __Pyx_GOTREF(__pyx_t_2);
6872 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6873 __pyx_t_10 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_2); if (unlikely((__pyx_t_10 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(0, 158, __pyx_L1_error)
6874 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6875 __pyx_v_level->data_offset = __pyx_t_10;
6876
6877 /* "bx/bbi/bbi_file.pyx":159
6878 * level.reserved = reader.read_uint32()
6879 * level.data_offset = reader.read_uint64()
6880 * level.index_offset = reader.read_uint64() # <<<<<<<<<<<<<<
6881 * self.level_list.append( level )
6882 * # Initialize and attach embedded BPTFile containing chromosome names and ids
6883 */
6884 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read_uint64); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 159, __pyx_L1_error)
6885 __Pyx_GOTREF(__pyx_t_3);
6886 __pyx_t_6 = NULL;
6887 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6888 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_3);
6889 if (likely(__pyx_t_6)) {
6890 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6891 __Pyx_INCREF(__pyx_t_6);
6892 __Pyx_INCREF(function);
6893 __Pyx_DECREF_SET(__pyx_t_3, function);
6894 }
6895 }
6896 __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
6897 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
6898 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 159, __pyx_L1_error)
6899 __Pyx_GOTREF(__pyx_t_2);
6900 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6901 __pyx_t_10 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_2); if (unlikely((__pyx_t_10 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(0, 159, __pyx_L1_error)
6902 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6903 __pyx_v_level->index_offset = __pyx_t_10;
6904
6905 /* "bx/bbi/bbi_file.pyx":160
6906 * level.data_offset = reader.read_uint64()
6907 * level.index_offset = reader.read_uint64()
6908 * self.level_list.append( level ) # <<<<<<<<<<<<<<
6909 * # Initialize and attach embedded BPTFile containing chromosome names and ids
6910 * reader.seek( self.chrom_tree_offset )
6911 */
6912 __pyx_t_11 = __Pyx_PyObject_Append(__pyx_v_self->level_list, ((PyObject *)__pyx_v_level)); if (unlikely(__pyx_t_11 == ((int)-1))) __PYX_ERR(0, 160, __pyx_L1_error)
6913 }
6914
6915 /* "bx/bbi/bbi_file.pyx":162
6916 * self.level_list.append( level )
6917 * # Initialize and attach embedded BPTFile containing chromosome names and ids
6918 * reader.seek( self.chrom_tree_offset ) # <<<<<<<<<<<<<<
6919 * self.chrom_bpt = BPTFile( file=self.file )
6920 *
6921 */
6922 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_seek); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 162, __pyx_L1_error)
6923 __Pyx_GOTREF(__pyx_t_3);
6924 __pyx_t_6 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->chrom_tree_offset); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 162, __pyx_L1_error)
6925 __Pyx_GOTREF(__pyx_t_6);
6926 __pyx_t_4 = NULL;
6927 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
6928 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_3);
6929 if (likely(__pyx_t_4)) {
6930 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
6931 __Pyx_INCREF(__pyx_t_4);
6932 __Pyx_INCREF(function);
6933 __Pyx_DECREF_SET(__pyx_t_3, function);
6934 }
6935 }
6936 __pyx_t_2 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_3, __pyx_t_4, __pyx_t_6) : __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_6);
6937 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
6938 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
6939 if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 162, __pyx_L1_error)
6940 __Pyx_GOTREF(__pyx_t_2);
6941 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
6942 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6943
6944 /* "bx/bbi/bbi_file.pyx":163
6945 * # Initialize and attach embedded BPTFile containing chromosome names and ids
6946 * reader.seek( self.chrom_tree_offset )
6947 * self.chrom_bpt = BPTFile( file=self.file ) # <<<<<<<<<<<<<<
6948 *
6949 * cdef visit_blocks_in_region( self, bits32 chrom_id, bits32 start, bits32 end, BlockHandler handler ):
6950 */
6951 __pyx_t_2 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 163, __pyx_L1_error)
6952 __Pyx_GOTREF(__pyx_t_2);
6953 if (PyDict_SetItem(__pyx_t_2, __pyx_n_s_file, __pyx_v_self->file) < 0) __PYX_ERR(0, 163, __pyx_L1_error)
6954 __pyx_t_3 = __Pyx_PyObject_Call(((PyObject *)__pyx_ptype_2bx_3bbi_8bpt_file_BPTFile), __pyx_empty_tuple, __pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 163, __pyx_L1_error)
6955 __Pyx_GOTREF(__pyx_t_3);
6956 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
6957 __Pyx_GIVEREF(__pyx_t_3);
6958 __Pyx_GOTREF(__pyx_v_self->chrom_bpt);
6959 __Pyx_DECREF(((PyObject *)__pyx_v_self->chrom_bpt));
6960 __pyx_v_self->chrom_bpt = ((struct __pyx_obj_2bx_3bbi_8bpt_file_BPTFile *)__pyx_t_3);
6961 __pyx_t_3 = 0;
6962
6963 /* "bx/bbi/bbi_file.pyx":127
6964 * self.open( file, expected_sig, type_name )
6965 *
6966 * def open( self, file, expected_sig, type_name ): # <<<<<<<<<<<<<<
6967 * """
6968 * Initialize from an existing bbi file, signature (magic) must be passed
6969 */
6970
6971 /* function exit code */
6972 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
6973 goto __pyx_L0;
6974 __pyx_L1_error:;
6975 __Pyx_XDECREF(__pyx_t_2);
6976 __Pyx_XDECREF(__pyx_t_3);
6977 __Pyx_XDECREF(__pyx_t_4);
6978 __Pyx_XDECREF(__pyx_t_6);
6979 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.open", __pyx_clineno, __pyx_lineno, __pyx_filename);
6980 __pyx_r = NULL;
6981 __pyx_L0:;
6982 __Pyx_XDECREF(__pyx_v_reader);
6983 __Pyx_XDECREF((PyObject *)__pyx_v_level);
6984 __Pyx_XGIVEREF(__pyx_r);
6985 __Pyx_RefNannyFinishContext();
6986 return __pyx_r;
6987 }
6988
6989 /* "bx/bbi/bbi_file.pyx":165
6990 * self.chrom_bpt = BPTFile( file=self.file )
6991 *
6992 * cdef visit_blocks_in_region( self, bits32 chrom_id, bits32 start, bits32 end, BlockHandler handler ): # <<<<<<<<<<<<<<
6993 * """
6994 * Visit each block from the full data that overlaps a specific region
6995 */
6996
__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_visit_blocks_in_region(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler * __pyx_v_handler)6997 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_visit_blocks_in_region(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *__pyx_v_handler) {
6998 struct __pyx_obj_2bx_3bbi_12cirtree_file_CIRTreeFile *__pyx_v_ctf = 0;
6999 PyObject *__pyx_v_reader = NULL;
7000 PyObject *__pyx_v_block_list = NULL;
7001 PyObject *__pyx_v_offset = NULL;
7002 PyObject *__pyx_v_size = NULL;
7003 PyObject *__pyx_v_block_data = NULL;
7004 PyObject *__pyx_r = NULL;
7005 __Pyx_RefNannyDeclarations
7006 PyObject *__pyx_t_1 = NULL;
7007 PyObject *__pyx_t_2 = NULL;
7008 PyObject *__pyx_t_3 = NULL;
7009 PyObject *__pyx_t_4 = NULL;
7010 PyObject *__pyx_t_5 = NULL;
7011 PyObject *__pyx_t_6 = NULL;
7012 int __pyx_t_7;
7013 PyObject *__pyx_t_8 = NULL;
7014 Py_ssize_t __pyx_t_9;
7015 PyObject *(*__pyx_t_10)(PyObject *);
7016 PyObject *(*__pyx_t_11)(PyObject *);
7017 int __pyx_t_12;
7018 int __pyx_lineno = 0;
7019 const char *__pyx_filename = NULL;
7020 int __pyx_clineno = 0;
7021 __Pyx_RefNannySetupContext("visit_blocks_in_region", 0);
7022
7023 /* "bx/bbi/bbi_file.pyx":170
7024 * """
7025 * cdef CIRTreeFile ctf
7026 * reader = self.reader # <<<<<<<<<<<<<<
7027 * reader.seek( self.unzoomed_index_offset )
7028 * ctf = CIRTreeFile( reader.file )
7029 */
7030 __pyx_t_1 = __pyx_v_self->reader;
7031 __Pyx_INCREF(__pyx_t_1);
7032 __pyx_v_reader = __pyx_t_1;
7033 __pyx_t_1 = 0;
7034
7035 /* "bx/bbi/bbi_file.pyx":171
7036 * cdef CIRTreeFile ctf
7037 * reader = self.reader
7038 * reader.seek( self.unzoomed_index_offset ) # <<<<<<<<<<<<<<
7039 * ctf = CIRTreeFile( reader.file )
7040 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end )
7041 */
7042 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_seek); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 171, __pyx_L1_error)
7043 __Pyx_GOTREF(__pyx_t_2);
7044 __pyx_t_3 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->unzoomed_index_offset); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 171, __pyx_L1_error)
7045 __Pyx_GOTREF(__pyx_t_3);
7046 __pyx_t_4 = NULL;
7047 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
7048 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_2);
7049 if (likely(__pyx_t_4)) {
7050 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
7051 __Pyx_INCREF(__pyx_t_4);
7052 __Pyx_INCREF(function);
7053 __Pyx_DECREF_SET(__pyx_t_2, function);
7054 }
7055 }
7056 __pyx_t_1 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_4, __pyx_t_3) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_3);
7057 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
7058 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
7059 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 171, __pyx_L1_error)
7060 __Pyx_GOTREF(__pyx_t_1);
7061 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
7062 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7063
7064 /* "bx/bbi/bbi_file.pyx":172
7065 * reader = self.reader
7066 * reader.seek( self.unzoomed_index_offset )
7067 * ctf = CIRTreeFile( reader.file ) # <<<<<<<<<<<<<<
7068 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end )
7069 * for offset, size in block_list:
7070 */
7071 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_file); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 172, __pyx_L1_error)
7072 __Pyx_GOTREF(__pyx_t_1);
7073 __pyx_t_2 = __Pyx_PyObject_CallOneArg(((PyObject *)__pyx_ptype_2bx_3bbi_12cirtree_file_CIRTreeFile), __pyx_t_1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 172, __pyx_L1_error)
7074 __Pyx_GOTREF(__pyx_t_2);
7075 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7076 __pyx_v_ctf = ((struct __pyx_obj_2bx_3bbi_12cirtree_file_CIRTreeFile *)__pyx_t_2);
7077 __pyx_t_2 = 0;
7078
7079 /* "bx/bbi/bbi_file.pyx":173
7080 * reader.seek( self.unzoomed_index_offset )
7081 * ctf = CIRTreeFile( reader.file )
7082 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end ) # <<<<<<<<<<<<<<
7083 * for offset, size in block_list:
7084 * # Seek to and read all data for the block
7085 */
7086 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_ctf), __pyx_n_s_find_overlapping_blocks); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 173, __pyx_L1_error)
7087 __Pyx_GOTREF(__pyx_t_1);
7088 __pyx_t_3 = __Pyx_PyInt_From_unsigned_int(__pyx_v_chrom_id); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 173, __pyx_L1_error)
7089 __Pyx_GOTREF(__pyx_t_3);
7090 __pyx_t_4 = __Pyx_PyInt_From_unsigned_int(__pyx_v_start); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 173, __pyx_L1_error)
7091 __Pyx_GOTREF(__pyx_t_4);
7092 __pyx_t_5 = __Pyx_PyInt_From_unsigned_int(__pyx_v_end); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 173, __pyx_L1_error)
7093 __Pyx_GOTREF(__pyx_t_5);
7094 __pyx_t_6 = NULL;
7095 __pyx_t_7 = 0;
7096 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_1))) {
7097 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_1);
7098 if (likely(__pyx_t_6)) {
7099 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
7100 __Pyx_INCREF(__pyx_t_6);
7101 __Pyx_INCREF(function);
7102 __Pyx_DECREF_SET(__pyx_t_1, function);
7103 __pyx_t_7 = 1;
7104 }
7105 }
7106 #if CYTHON_FAST_PYCALL
7107 if (PyFunction_Check(__pyx_t_1)) {
7108 PyObject *__pyx_temp[4] = {__pyx_t_6, __pyx_t_3, __pyx_t_4, __pyx_t_5};
7109 __pyx_t_2 = __Pyx_PyFunction_FastCall(__pyx_t_1, __pyx_temp+1-__pyx_t_7, 3+__pyx_t_7); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 173, __pyx_L1_error)
7110 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
7111 __Pyx_GOTREF(__pyx_t_2);
7112 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
7113 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
7114 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
7115 } else
7116 #endif
7117 #if CYTHON_FAST_PYCCALL
7118 if (__Pyx_PyFastCFunction_Check(__pyx_t_1)) {
7119 PyObject *__pyx_temp[4] = {__pyx_t_6, __pyx_t_3, __pyx_t_4, __pyx_t_5};
7120 __pyx_t_2 = __Pyx_PyCFunction_FastCall(__pyx_t_1, __pyx_temp+1-__pyx_t_7, 3+__pyx_t_7); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 173, __pyx_L1_error)
7121 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
7122 __Pyx_GOTREF(__pyx_t_2);
7123 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
7124 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
7125 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
7126 } else
7127 #endif
7128 {
7129 __pyx_t_8 = PyTuple_New(3+__pyx_t_7); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 173, __pyx_L1_error)
7130 __Pyx_GOTREF(__pyx_t_8);
7131 if (__pyx_t_6) {
7132 __Pyx_GIVEREF(__pyx_t_6); PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_6); __pyx_t_6 = NULL;
7133 }
7134 __Pyx_GIVEREF(__pyx_t_3);
7135 PyTuple_SET_ITEM(__pyx_t_8, 0+__pyx_t_7, __pyx_t_3);
7136 __Pyx_GIVEREF(__pyx_t_4);
7137 PyTuple_SET_ITEM(__pyx_t_8, 1+__pyx_t_7, __pyx_t_4);
7138 __Pyx_GIVEREF(__pyx_t_5);
7139 PyTuple_SET_ITEM(__pyx_t_8, 2+__pyx_t_7, __pyx_t_5);
7140 __pyx_t_3 = 0;
7141 __pyx_t_4 = 0;
7142 __pyx_t_5 = 0;
7143 __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_1, __pyx_t_8, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 173, __pyx_L1_error)
7144 __Pyx_GOTREF(__pyx_t_2);
7145 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
7146 }
7147 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7148 __pyx_v_block_list = __pyx_t_2;
7149 __pyx_t_2 = 0;
7150
7151 /* "bx/bbi/bbi_file.pyx":174
7152 * ctf = CIRTreeFile( reader.file )
7153 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end )
7154 * for offset, size in block_list: # <<<<<<<<<<<<<<
7155 * # Seek to and read all data for the block
7156 * reader.seek( offset )
7157 */
7158 if (likely(PyList_CheckExact(__pyx_v_block_list)) || PyTuple_CheckExact(__pyx_v_block_list)) {
7159 __pyx_t_2 = __pyx_v_block_list; __Pyx_INCREF(__pyx_t_2); __pyx_t_9 = 0;
7160 __pyx_t_10 = NULL;
7161 } else {
7162 __pyx_t_9 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_v_block_list); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 174, __pyx_L1_error)
7163 __Pyx_GOTREF(__pyx_t_2);
7164 __pyx_t_10 = Py_TYPE(__pyx_t_2)->tp_iternext; if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 174, __pyx_L1_error)
7165 }
7166 for (;;) {
7167 if (likely(!__pyx_t_10)) {
7168 if (likely(PyList_CheckExact(__pyx_t_2))) {
7169 if (__pyx_t_9 >= PyList_GET_SIZE(__pyx_t_2)) break;
7170 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
7171 __pyx_t_1 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_9); __Pyx_INCREF(__pyx_t_1); __pyx_t_9++; if (unlikely(0 < 0)) __PYX_ERR(0, 174, __pyx_L1_error)
7172 #else
7173 __pyx_t_1 = PySequence_ITEM(__pyx_t_2, __pyx_t_9); __pyx_t_9++; if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 174, __pyx_L1_error)
7174 __Pyx_GOTREF(__pyx_t_1);
7175 #endif
7176 } else {
7177 if (__pyx_t_9 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
7178 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
7179 __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_9); __Pyx_INCREF(__pyx_t_1); __pyx_t_9++; if (unlikely(0 < 0)) __PYX_ERR(0, 174, __pyx_L1_error)
7180 #else
7181 __pyx_t_1 = PySequence_ITEM(__pyx_t_2, __pyx_t_9); __pyx_t_9++; if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 174, __pyx_L1_error)
7182 __Pyx_GOTREF(__pyx_t_1);
7183 #endif
7184 }
7185 } else {
7186 __pyx_t_1 = __pyx_t_10(__pyx_t_2);
7187 if (unlikely(!__pyx_t_1)) {
7188 PyObject* exc_type = PyErr_Occurred();
7189 if (exc_type) {
7190 if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
7191 else __PYX_ERR(0, 174, __pyx_L1_error)
7192 }
7193 break;
7194 }
7195 __Pyx_GOTREF(__pyx_t_1);
7196 }
7197 if ((likely(PyTuple_CheckExact(__pyx_t_1))) || (PyList_CheckExact(__pyx_t_1))) {
7198 PyObject* sequence = __pyx_t_1;
7199 Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
7200 if (unlikely(size != 2)) {
7201 if (size > 2) __Pyx_RaiseTooManyValuesError(2);
7202 else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
7203 __PYX_ERR(0, 174, __pyx_L1_error)
7204 }
7205 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
7206 if (likely(PyTuple_CheckExact(sequence))) {
7207 __pyx_t_8 = PyTuple_GET_ITEM(sequence, 0);
7208 __pyx_t_5 = PyTuple_GET_ITEM(sequence, 1);
7209 } else {
7210 __pyx_t_8 = PyList_GET_ITEM(sequence, 0);
7211 __pyx_t_5 = PyList_GET_ITEM(sequence, 1);
7212 }
7213 __Pyx_INCREF(__pyx_t_8);
7214 __Pyx_INCREF(__pyx_t_5);
7215 #else
7216 __pyx_t_8 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 174, __pyx_L1_error)
7217 __Pyx_GOTREF(__pyx_t_8);
7218 __pyx_t_5 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 174, __pyx_L1_error)
7219 __Pyx_GOTREF(__pyx_t_5);
7220 #endif
7221 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7222 } else {
7223 Py_ssize_t index = -1;
7224 __pyx_t_4 = PyObject_GetIter(__pyx_t_1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 174, __pyx_L1_error)
7225 __Pyx_GOTREF(__pyx_t_4);
7226 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7227 __pyx_t_11 = Py_TYPE(__pyx_t_4)->tp_iternext;
7228 index = 0; __pyx_t_8 = __pyx_t_11(__pyx_t_4); if (unlikely(!__pyx_t_8)) goto __pyx_L5_unpacking_failed;
7229 __Pyx_GOTREF(__pyx_t_8);
7230 index = 1; __pyx_t_5 = __pyx_t_11(__pyx_t_4); if (unlikely(!__pyx_t_5)) goto __pyx_L5_unpacking_failed;
7231 __Pyx_GOTREF(__pyx_t_5);
7232 if (__Pyx_IternextUnpackEndCheck(__pyx_t_11(__pyx_t_4), 2) < 0) __PYX_ERR(0, 174, __pyx_L1_error)
7233 __pyx_t_11 = NULL;
7234 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
7235 goto __pyx_L6_unpacking_done;
7236 __pyx_L5_unpacking_failed:;
7237 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
7238 __pyx_t_11 = NULL;
7239 if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
7240 __PYX_ERR(0, 174, __pyx_L1_error)
7241 __pyx_L6_unpacking_done:;
7242 }
7243 __Pyx_XDECREF_SET(__pyx_v_offset, __pyx_t_8);
7244 __pyx_t_8 = 0;
7245 __Pyx_XDECREF_SET(__pyx_v_size, __pyx_t_5);
7246 __pyx_t_5 = 0;
7247
7248 /* "bx/bbi/bbi_file.pyx":176
7249 * for offset, size in block_list:
7250 * # Seek to and read all data for the block
7251 * reader.seek( offset ) # <<<<<<<<<<<<<<
7252 * block_data = reader.read( size )
7253 * # Might need to uncompress
7254 */
7255 __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_seek); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 176, __pyx_L1_error)
7256 __Pyx_GOTREF(__pyx_t_5);
7257 __pyx_t_8 = NULL;
7258 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
7259 __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_5);
7260 if (likely(__pyx_t_8)) {
7261 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
7262 __Pyx_INCREF(__pyx_t_8);
7263 __Pyx_INCREF(function);
7264 __Pyx_DECREF_SET(__pyx_t_5, function);
7265 }
7266 }
7267 __pyx_t_1 = (__pyx_t_8) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_8, __pyx_v_offset) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_v_offset);
7268 __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
7269 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 176, __pyx_L1_error)
7270 __Pyx_GOTREF(__pyx_t_1);
7271 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
7272 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7273
7274 /* "bx/bbi/bbi_file.pyx":177
7275 * # Seek to and read all data for the block
7276 * reader.seek( offset )
7277 * block_data = reader.read( size ) # <<<<<<<<<<<<<<
7278 * # Might need to uncompress
7279 * if self.uncompress_buf_size > 0:
7280 */
7281 __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 177, __pyx_L1_error)
7282 __Pyx_GOTREF(__pyx_t_5);
7283 __pyx_t_8 = NULL;
7284 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
7285 __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_5);
7286 if (likely(__pyx_t_8)) {
7287 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
7288 __Pyx_INCREF(__pyx_t_8);
7289 __Pyx_INCREF(function);
7290 __Pyx_DECREF_SET(__pyx_t_5, function);
7291 }
7292 }
7293 __pyx_t_1 = (__pyx_t_8) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_8, __pyx_v_size) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_v_size);
7294 __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
7295 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 177, __pyx_L1_error)
7296 __Pyx_GOTREF(__pyx_t_1);
7297 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
7298 __Pyx_XDECREF_SET(__pyx_v_block_data, __pyx_t_1);
7299 __pyx_t_1 = 0;
7300
7301 /* "bx/bbi/bbi_file.pyx":179
7302 * block_data = reader.read( size )
7303 * # Might need to uncompress
7304 * if self.uncompress_buf_size > 0: # <<<<<<<<<<<<<<
7305 * block_data = zlib.decompress( block_data )
7306 * handler.handle_block( block_data, self )
7307 */
7308 __pyx_t_12 = ((__pyx_v_self->uncompress_buf_size > 0) != 0);
7309 if (__pyx_t_12) {
7310
7311 /* "bx/bbi/bbi_file.pyx":180
7312 * # Might need to uncompress
7313 * if self.uncompress_buf_size > 0:
7314 * block_data = zlib.decompress( block_data ) # <<<<<<<<<<<<<<
7315 * handler.handle_block( block_data, self )
7316 *
7317 */
7318 __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_zlib); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 180, __pyx_L1_error)
7319 __Pyx_GOTREF(__pyx_t_5);
7320 __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_decompress); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 180, __pyx_L1_error)
7321 __Pyx_GOTREF(__pyx_t_8);
7322 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
7323 __pyx_t_5 = NULL;
7324 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_8))) {
7325 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_8);
7326 if (likely(__pyx_t_5)) {
7327 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_8);
7328 __Pyx_INCREF(__pyx_t_5);
7329 __Pyx_INCREF(function);
7330 __Pyx_DECREF_SET(__pyx_t_8, function);
7331 }
7332 }
7333 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_8, __pyx_t_5, __pyx_v_block_data) : __Pyx_PyObject_CallOneArg(__pyx_t_8, __pyx_v_block_data);
7334 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
7335 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 180, __pyx_L1_error)
7336 __Pyx_GOTREF(__pyx_t_1);
7337 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
7338 __Pyx_DECREF_SET(__pyx_v_block_data, __pyx_t_1);
7339 __pyx_t_1 = 0;
7340
7341 /* "bx/bbi/bbi_file.pyx":179
7342 * block_data = reader.read( size )
7343 * # Might need to uncompress
7344 * if self.uncompress_buf_size > 0: # <<<<<<<<<<<<<<
7345 * block_data = zlib.decompress( block_data )
7346 * handler.handle_block( block_data, self )
7347 */
7348 }
7349
7350 /* "bx/bbi/bbi_file.pyx":181
7351 * if self.uncompress_buf_size > 0:
7352 * block_data = zlib.decompress( block_data )
7353 * handler.handle_block( block_data, self ) # <<<<<<<<<<<<<<
7354 *
7355 * cpdef summarize( self, object chrom, bits32 start, bits32 end, int summary_size ):
7356 */
7357 if (!(likely(PyBytes_CheckExact(__pyx_v_block_data))||((__pyx_v_block_data) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "bytes", Py_TYPE(__pyx_v_block_data)->tp_name), 0))) __PYX_ERR(0, 181, __pyx_L1_error)
7358 __pyx_t_1 = ((struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BlockHandler *)__pyx_v_handler->__pyx_vtab)->handle_block(__pyx_v_handler, ((PyObject*)__pyx_v_block_data), __pyx_v_self); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 181, __pyx_L1_error)
7359 __Pyx_GOTREF(__pyx_t_1);
7360 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7361
7362 /* "bx/bbi/bbi_file.pyx":174
7363 * ctf = CIRTreeFile( reader.file )
7364 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end )
7365 * for offset, size in block_list: # <<<<<<<<<<<<<<
7366 * # Seek to and read all data for the block
7367 * reader.seek( offset )
7368 */
7369 }
7370 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
7371
7372 /* "bx/bbi/bbi_file.pyx":165
7373 * self.chrom_bpt = BPTFile( file=self.file )
7374 *
7375 * cdef visit_blocks_in_region( self, bits32 chrom_id, bits32 start, bits32 end, BlockHandler handler ): # <<<<<<<<<<<<<<
7376 * """
7377 * Visit each block from the full data that overlaps a specific region
7378 */
7379
7380 /* function exit code */
7381 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
7382 goto __pyx_L0;
7383 __pyx_L1_error:;
7384 __Pyx_XDECREF(__pyx_t_1);
7385 __Pyx_XDECREF(__pyx_t_2);
7386 __Pyx_XDECREF(__pyx_t_3);
7387 __Pyx_XDECREF(__pyx_t_4);
7388 __Pyx_XDECREF(__pyx_t_5);
7389 __Pyx_XDECREF(__pyx_t_6);
7390 __Pyx_XDECREF(__pyx_t_8);
7391 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.visit_blocks_in_region", __pyx_clineno, __pyx_lineno, __pyx_filename);
7392 __pyx_r = 0;
7393 __pyx_L0:;
7394 __Pyx_XDECREF((PyObject *)__pyx_v_ctf);
7395 __Pyx_XDECREF(__pyx_v_reader);
7396 __Pyx_XDECREF(__pyx_v_block_list);
7397 __Pyx_XDECREF(__pyx_v_offset);
7398 __Pyx_XDECREF(__pyx_v_size);
7399 __Pyx_XDECREF(__pyx_v_block_data);
7400 __Pyx_XGIVEREF(__pyx_r);
7401 __Pyx_RefNannyFinishContext();
7402 return __pyx_r;
7403 }
7404
7405 /* "bx/bbi/bbi_file.pyx":183
7406 * handler.handle_block( block_data, self )
7407 *
7408 * cpdef summarize( self, object chrom, bits32 start, bits32 end, int summary_size ): # <<<<<<<<<<<<<<
7409 * """
7410 * Gets `summary_size` data points over the regions `chrom`:`start`-`end`.
7411 */
7412
7413 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5summarize(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_chrom,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,int __pyx_v_summary_size,int __pyx_skip_dispatch)7414 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size, int __pyx_skip_dispatch) {
7415 char *__pyx_v_cchrom;
7416 PyObject *__pyx_v_bytes_chrom = NULL;
7417 PyObject *__pyx_v_chrom_id = NULL;
7418 CYTHON_UNUSED PyObject *__pyx_v_chrom_size = NULL;
7419 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_size;
7420 int __pyx_v_full_reduction;
7421 int __pyx_v_zoom;
7422 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_zoom_level = 0;
7423 PyObject *__pyx_r = NULL;
7424 __Pyx_RefNannyDeclarations
7425 PyObject *__pyx_t_1 = NULL;
7426 PyObject *__pyx_t_2 = NULL;
7427 PyObject *__pyx_t_3 = NULL;
7428 PyObject *__pyx_t_4 = NULL;
7429 PyObject *__pyx_t_5 = NULL;
7430 PyObject *__pyx_t_6 = NULL;
7431 PyObject *__pyx_t_7 = NULL;
7432 int __pyx_t_8;
7433 PyObject *__pyx_t_9 = NULL;
7434 int __pyx_t_10;
7435 PyObject *(*__pyx_t_11)(PyObject *);
7436 int __pyx_t_12;
7437 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_13;
7438 int __pyx_lineno = 0;
7439 const char *__pyx_filename = NULL;
7440 int __pyx_clineno = 0;
7441 __Pyx_RefNannySetupContext("summarize", 0);
7442 /* Check if called by wrapper */
7443 if (unlikely(__pyx_skip_dispatch)) ;
7444 /* Check if overridden in Python */
7445 else if (unlikely((Py_TYPE(((PyObject *)__pyx_v_self))->tp_dictoffset != 0) || (Py_TYPE(((PyObject *)__pyx_v_self))->tp_flags & (Py_TPFLAGS_IS_ABSTRACT | Py_TPFLAGS_HEAPTYPE)))) {
7446 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
7447 static PY_UINT64_T __pyx_tp_dict_version = __PYX_DICT_VERSION_INIT, __pyx_obj_dict_version = __PYX_DICT_VERSION_INIT;
7448 if (unlikely(!__Pyx_object_dict_version_matches(((PyObject *)__pyx_v_self), __pyx_tp_dict_version, __pyx_obj_dict_version))) {
7449 PY_UINT64_T __pyx_type_dict_guard = __Pyx_get_tp_dict_version(((PyObject *)__pyx_v_self));
7450 #endif
7451 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_summarize); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 183, __pyx_L1_error)
7452 __Pyx_GOTREF(__pyx_t_1);
7453 if (!PyCFunction_Check(__pyx_t_1) || (PyCFunction_GET_FUNCTION(__pyx_t_1) != (PyCFunction)(void*)__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5summarize)) {
7454 __Pyx_XDECREF(__pyx_r);
7455 __pyx_t_3 = __Pyx_PyInt_From_unsigned_int(__pyx_v_start); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 183, __pyx_L1_error)
7456 __Pyx_GOTREF(__pyx_t_3);
7457 __pyx_t_4 = __Pyx_PyInt_From_unsigned_int(__pyx_v_end); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 183, __pyx_L1_error)
7458 __Pyx_GOTREF(__pyx_t_4);
7459 __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_summary_size); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 183, __pyx_L1_error)
7460 __Pyx_GOTREF(__pyx_t_5);
7461 __Pyx_INCREF(__pyx_t_1);
7462 __pyx_t_6 = __pyx_t_1; __pyx_t_7 = NULL;
7463 __pyx_t_8 = 0;
7464 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_6))) {
7465 __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_6);
7466 if (likely(__pyx_t_7)) {
7467 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
7468 __Pyx_INCREF(__pyx_t_7);
7469 __Pyx_INCREF(function);
7470 __Pyx_DECREF_SET(__pyx_t_6, function);
7471 __pyx_t_8 = 1;
7472 }
7473 }
7474 #if CYTHON_FAST_PYCALL
7475 if (PyFunction_Check(__pyx_t_6)) {
7476 PyObject *__pyx_temp[5] = {__pyx_t_7, __pyx_v_chrom, __pyx_t_3, __pyx_t_4, __pyx_t_5};
7477 __pyx_t_2 = __Pyx_PyFunction_FastCall(__pyx_t_6, __pyx_temp+1-__pyx_t_8, 4+__pyx_t_8); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 183, __pyx_L1_error)
7478 __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
7479 __Pyx_GOTREF(__pyx_t_2);
7480 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
7481 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
7482 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
7483 } else
7484 #endif
7485 #if CYTHON_FAST_PYCCALL
7486 if (__Pyx_PyFastCFunction_Check(__pyx_t_6)) {
7487 PyObject *__pyx_temp[5] = {__pyx_t_7, __pyx_v_chrom, __pyx_t_3, __pyx_t_4, __pyx_t_5};
7488 __pyx_t_2 = __Pyx_PyCFunction_FastCall(__pyx_t_6, __pyx_temp+1-__pyx_t_8, 4+__pyx_t_8); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 183, __pyx_L1_error)
7489 __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
7490 __Pyx_GOTREF(__pyx_t_2);
7491 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
7492 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
7493 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
7494 } else
7495 #endif
7496 {
7497 __pyx_t_9 = PyTuple_New(4+__pyx_t_8); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 183, __pyx_L1_error)
7498 __Pyx_GOTREF(__pyx_t_9);
7499 if (__pyx_t_7) {
7500 __Pyx_GIVEREF(__pyx_t_7); PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_7); __pyx_t_7 = NULL;
7501 }
7502 __Pyx_INCREF(__pyx_v_chrom);
7503 __Pyx_GIVEREF(__pyx_v_chrom);
7504 PyTuple_SET_ITEM(__pyx_t_9, 0+__pyx_t_8, __pyx_v_chrom);
7505 __Pyx_GIVEREF(__pyx_t_3);
7506 PyTuple_SET_ITEM(__pyx_t_9, 1+__pyx_t_8, __pyx_t_3);
7507 __Pyx_GIVEREF(__pyx_t_4);
7508 PyTuple_SET_ITEM(__pyx_t_9, 2+__pyx_t_8, __pyx_t_4);
7509 __Pyx_GIVEREF(__pyx_t_5);
7510 PyTuple_SET_ITEM(__pyx_t_9, 3+__pyx_t_8, __pyx_t_5);
7511 __pyx_t_3 = 0;
7512 __pyx_t_4 = 0;
7513 __pyx_t_5 = 0;
7514 __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_6, __pyx_t_9, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 183, __pyx_L1_error)
7515 __Pyx_GOTREF(__pyx_t_2);
7516 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
7517 }
7518 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
7519 __pyx_r = __pyx_t_2;
7520 __pyx_t_2 = 0;
7521 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7522 goto __pyx_L0;
7523 }
7524 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
7525 __pyx_tp_dict_version = __Pyx_get_tp_dict_version(((PyObject *)__pyx_v_self));
7526 __pyx_obj_dict_version = __Pyx_get_object_dict_version(((PyObject *)__pyx_v_self));
7527 if (unlikely(__pyx_type_dict_guard != __pyx_tp_dict_version)) {
7528 __pyx_tp_dict_version = __pyx_obj_dict_version = __PYX_DICT_VERSION_INIT;
7529 }
7530 #endif
7531 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7532 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
7533 }
7534 #endif
7535 }
7536
7537 /* "bx/bbi/bbi_file.pyx":188
7538 * """
7539 * cdef char * cchrom
7540 * if PY_MAJOR_VERSION >= 3: # <<<<<<<<<<<<<<
7541 * bytes_chrom = chrom.encode()
7542 * else:
7543 */
7544 __pyx_t_10 = ((PY_MAJOR_VERSION >= 3) != 0);
7545 if (__pyx_t_10) {
7546
7547 /* "bx/bbi/bbi_file.pyx":189
7548 * cdef char * cchrom
7549 * if PY_MAJOR_VERSION >= 3:
7550 * bytes_chrom = chrom.encode() # <<<<<<<<<<<<<<
7551 * else:
7552 * bytes_chrom = chrom
7553 */
7554 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_chrom, __pyx_n_s_encode); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 189, __pyx_L1_error)
7555 __Pyx_GOTREF(__pyx_t_2);
7556 __pyx_t_6 = NULL;
7557 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
7558 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_2);
7559 if (likely(__pyx_t_6)) {
7560 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
7561 __Pyx_INCREF(__pyx_t_6);
7562 __Pyx_INCREF(function);
7563 __Pyx_DECREF_SET(__pyx_t_2, function);
7564 }
7565 }
7566 __pyx_t_1 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_2);
7567 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
7568 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 189, __pyx_L1_error)
7569 __Pyx_GOTREF(__pyx_t_1);
7570 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
7571 __pyx_v_bytes_chrom = __pyx_t_1;
7572 __pyx_t_1 = 0;
7573
7574 /* "bx/bbi/bbi_file.pyx":188
7575 * """
7576 * cdef char * cchrom
7577 * if PY_MAJOR_VERSION >= 3: # <<<<<<<<<<<<<<
7578 * bytes_chrom = chrom.encode()
7579 * else:
7580 */
7581 goto __pyx_L3;
7582 }
7583
7584 /* "bx/bbi/bbi_file.pyx":191
7585 * bytes_chrom = chrom.encode()
7586 * else:
7587 * bytes_chrom = chrom # <<<<<<<<<<<<<<
7588 * cchrom = PyBytes_AsString(bytes_chrom)
7589 * if start >= end:
7590 */
7591 /*else*/ {
7592 __Pyx_INCREF(__pyx_v_chrom);
7593 __pyx_v_bytes_chrom = __pyx_v_chrom;
7594 }
7595 __pyx_L3:;
7596
7597 /* "bx/bbi/bbi_file.pyx":192
7598 * else:
7599 * bytes_chrom = chrom
7600 * cchrom = PyBytes_AsString(bytes_chrom) # <<<<<<<<<<<<<<
7601 * if start >= end:
7602 * return None
7603 */
7604 __pyx_v_cchrom = PyBytes_AsString(__pyx_v_bytes_chrom);
7605
7606 /* "bx/bbi/bbi_file.pyx":193
7607 * bytes_chrom = chrom
7608 * cchrom = PyBytes_AsString(bytes_chrom)
7609 * if start >= end: # <<<<<<<<<<<<<<
7610 * return None
7611 * chrom_id, chrom_size = self._get_chrom_id_and_size( cchrom )
7612 */
7613 __pyx_t_10 = ((__pyx_v_start >= __pyx_v_end) != 0);
7614 if (__pyx_t_10) {
7615
7616 /* "bx/bbi/bbi_file.pyx":194
7617 * cchrom = PyBytes_AsString(bytes_chrom)
7618 * if start >= end:
7619 * return None # <<<<<<<<<<<<<<
7620 * chrom_id, chrom_size = self._get_chrom_id_and_size( cchrom )
7621 * if chrom_id is None:
7622 */
7623 __Pyx_XDECREF(__pyx_r);
7624 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
7625 goto __pyx_L0;
7626
7627 /* "bx/bbi/bbi_file.pyx":193
7628 * bytes_chrom = chrom
7629 * cchrom = PyBytes_AsString(bytes_chrom)
7630 * if start >= end: # <<<<<<<<<<<<<<
7631 * return None
7632 * chrom_id, chrom_size = self._get_chrom_id_and_size( cchrom )
7633 */
7634 }
7635
7636 /* "bx/bbi/bbi_file.pyx":195
7637 * if start >= end:
7638 * return None
7639 * chrom_id, chrom_size = self._get_chrom_id_and_size( cchrom ) # <<<<<<<<<<<<<<
7640 * if chrom_id is None:
7641 * return None
7642 */
7643 __pyx_t_1 = ((struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self->__pyx_vtab)->_get_chrom_id_and_size(__pyx_v_self, __pyx_v_cchrom); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 195, __pyx_L1_error)
7644 __Pyx_GOTREF(__pyx_t_1);
7645 if ((likely(PyTuple_CheckExact(__pyx_t_1))) || (PyList_CheckExact(__pyx_t_1))) {
7646 PyObject* sequence = __pyx_t_1;
7647 Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
7648 if (unlikely(size != 2)) {
7649 if (size > 2) __Pyx_RaiseTooManyValuesError(2);
7650 else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
7651 __PYX_ERR(0, 195, __pyx_L1_error)
7652 }
7653 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
7654 if (likely(PyTuple_CheckExact(sequence))) {
7655 __pyx_t_2 = PyTuple_GET_ITEM(sequence, 0);
7656 __pyx_t_6 = PyTuple_GET_ITEM(sequence, 1);
7657 } else {
7658 __pyx_t_2 = PyList_GET_ITEM(sequence, 0);
7659 __pyx_t_6 = PyList_GET_ITEM(sequence, 1);
7660 }
7661 __Pyx_INCREF(__pyx_t_2);
7662 __Pyx_INCREF(__pyx_t_6);
7663 #else
7664 __pyx_t_2 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 195, __pyx_L1_error)
7665 __Pyx_GOTREF(__pyx_t_2);
7666 __pyx_t_6 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 195, __pyx_L1_error)
7667 __Pyx_GOTREF(__pyx_t_6);
7668 #endif
7669 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7670 } else {
7671 Py_ssize_t index = -1;
7672 __pyx_t_9 = PyObject_GetIter(__pyx_t_1); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 195, __pyx_L1_error)
7673 __Pyx_GOTREF(__pyx_t_9);
7674 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
7675 __pyx_t_11 = Py_TYPE(__pyx_t_9)->tp_iternext;
7676 index = 0; __pyx_t_2 = __pyx_t_11(__pyx_t_9); if (unlikely(!__pyx_t_2)) goto __pyx_L5_unpacking_failed;
7677 __Pyx_GOTREF(__pyx_t_2);
7678 index = 1; __pyx_t_6 = __pyx_t_11(__pyx_t_9); if (unlikely(!__pyx_t_6)) goto __pyx_L5_unpacking_failed;
7679 __Pyx_GOTREF(__pyx_t_6);
7680 if (__Pyx_IternextUnpackEndCheck(__pyx_t_11(__pyx_t_9), 2) < 0) __PYX_ERR(0, 195, __pyx_L1_error)
7681 __pyx_t_11 = NULL;
7682 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
7683 goto __pyx_L6_unpacking_done;
7684 __pyx_L5_unpacking_failed:;
7685 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
7686 __pyx_t_11 = NULL;
7687 if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
7688 __PYX_ERR(0, 195, __pyx_L1_error)
7689 __pyx_L6_unpacking_done:;
7690 }
7691 __pyx_v_chrom_id = __pyx_t_2;
7692 __pyx_t_2 = 0;
7693 __pyx_v_chrom_size = __pyx_t_6;
7694 __pyx_t_6 = 0;
7695
7696 /* "bx/bbi/bbi_file.pyx":196
7697 * return None
7698 * chrom_id, chrom_size = self._get_chrom_id_and_size( cchrom )
7699 * if chrom_id is None: # <<<<<<<<<<<<<<
7700 * return None
7701 * # Return value will be a structured array (rather than an array
7702 */
7703 __pyx_t_10 = (__pyx_v_chrom_id == Py_None);
7704 __pyx_t_12 = (__pyx_t_10 != 0);
7705 if (__pyx_t_12) {
7706
7707 /* "bx/bbi/bbi_file.pyx":197
7708 * chrom_id, chrom_size = self._get_chrom_id_and_size( cchrom )
7709 * if chrom_id is None:
7710 * return None # <<<<<<<<<<<<<<
7711 * # Return value will be a structured array (rather than an array
7712 * # of summary element structures
7713 */
7714 __Pyx_XDECREF(__pyx_r);
7715 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
7716 goto __pyx_L0;
7717
7718 /* "bx/bbi/bbi_file.pyx":196
7719 * return None
7720 * chrom_id, chrom_size = self._get_chrom_id_and_size( cchrom )
7721 * if chrom_id is None: # <<<<<<<<<<<<<<
7722 * return None
7723 * # Return value will be a structured array (rather than an array
7724 */
7725 }
7726
7727 /* "bx/bbi/bbi_file.pyx":202
7728 *
7729 * # Find appropriate zoom level
7730 * cdef bits32 base_size = end - start # <<<<<<<<<<<<<<
7731 * cdef int full_reduction = base_size / summary_size
7732 * cdef int zoom = full_reduction / 2
7733 */
7734 __pyx_v_base_size = (__pyx_v_end - __pyx_v_start);
7735
7736 /* "bx/bbi/bbi_file.pyx":203
7737 * # Find appropriate zoom level
7738 * cdef bits32 base_size = end - start
7739 * cdef int full_reduction = base_size / summary_size # <<<<<<<<<<<<<<
7740 * cdef int zoom = full_reduction / 2
7741 * if zoom < 0:
7742 */
7743 if (unlikely(__pyx_v_summary_size == 0)) {
7744 PyErr_SetString(PyExc_ZeroDivisionError, "integer division or modulo by zero");
7745 __PYX_ERR(0, 203, __pyx_L1_error)
7746 }
7747 __pyx_v_full_reduction = (__pyx_v_base_size / __pyx_v_summary_size);
7748
7749 /* "bx/bbi/bbi_file.pyx":204
7750 * cdef bits32 base_size = end - start
7751 * cdef int full_reduction = base_size / summary_size
7752 * cdef int zoom = full_reduction / 2 # <<<<<<<<<<<<<<
7753 * if zoom < 0:
7754 * zoom = 0
7755 */
7756 __pyx_v_zoom = __Pyx_div_long(__pyx_v_full_reduction, 2);
7757
7758 /* "bx/bbi/bbi_file.pyx":205
7759 * cdef int full_reduction = base_size / summary_size
7760 * cdef int zoom = full_reduction / 2
7761 * if zoom < 0: # <<<<<<<<<<<<<<
7762 * zoom = 0
7763 * cdef ZoomLevel zoom_level = self._best_zoom_level( zoom )
7764 */
7765 __pyx_t_12 = ((__pyx_v_zoom < 0) != 0);
7766 if (__pyx_t_12) {
7767
7768 /* "bx/bbi/bbi_file.pyx":206
7769 * cdef int zoom = full_reduction / 2
7770 * if zoom < 0:
7771 * zoom = 0 # <<<<<<<<<<<<<<
7772 * cdef ZoomLevel zoom_level = self._best_zoom_level( zoom )
7773 * if zoom_level is not None:
7774 */
7775 __pyx_v_zoom = 0;
7776
7777 /* "bx/bbi/bbi_file.pyx":205
7778 * cdef int full_reduction = base_size / summary_size
7779 * cdef int zoom = full_reduction / 2
7780 * if zoom < 0: # <<<<<<<<<<<<<<
7781 * zoom = 0
7782 * cdef ZoomLevel zoom_level = self._best_zoom_level( zoom )
7783 */
7784 }
7785
7786 /* "bx/bbi/bbi_file.pyx":207
7787 * if zoom < 0:
7788 * zoom = 0
7789 * cdef ZoomLevel zoom_level = self._best_zoom_level( zoom ) # <<<<<<<<<<<<<<
7790 * if zoom_level is not None:
7791 * return zoom_level._summarize( chrom_id, start, end, summary_size )
7792 */
7793 __pyx_t_1 = ((struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self->__pyx_vtab)->_best_zoom_level(__pyx_v_self, __pyx_v_zoom); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 207, __pyx_L1_error)
7794 __Pyx_GOTREF(__pyx_t_1);
7795 if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_2bx_3bbi_8bbi_file_ZoomLevel))))) __PYX_ERR(0, 207, __pyx_L1_error)
7796 __pyx_v_zoom_level = ((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_t_1);
7797 __pyx_t_1 = 0;
7798
7799 /* "bx/bbi/bbi_file.pyx":208
7800 * zoom = 0
7801 * cdef ZoomLevel zoom_level = self._best_zoom_level( zoom )
7802 * if zoom_level is not None: # <<<<<<<<<<<<<<
7803 * return zoom_level._summarize( chrom_id, start, end, summary_size )
7804 * else:
7805 */
7806 __pyx_t_12 = (((PyObject *)__pyx_v_zoom_level) != Py_None);
7807 __pyx_t_10 = (__pyx_t_12 != 0);
7808 if (__pyx_t_10) {
7809
7810 /* "bx/bbi/bbi_file.pyx":209
7811 * cdef ZoomLevel zoom_level = self._best_zoom_level( zoom )
7812 * if zoom_level is not None:
7813 * return zoom_level._summarize( chrom_id, start, end, summary_size ) # <<<<<<<<<<<<<<
7814 * else:
7815 * return self._summarize_from_full( chrom_id, start, end, summary_size )
7816 */
7817 __Pyx_XDECREF(__pyx_r);
7818 __pyx_t_13 = __Pyx_PyInt_As_unsigned_int(__pyx_v_chrom_id); if (unlikely((__pyx_t_13 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 209, __pyx_L1_error)
7819 __pyx_t_1 = ((struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_zoom_level->__pyx_vtab)->_summarize(__pyx_v_zoom_level, __pyx_t_13, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 209, __pyx_L1_error)
7820 __Pyx_GOTREF(__pyx_t_1);
7821 __pyx_r = __pyx_t_1;
7822 __pyx_t_1 = 0;
7823 goto __pyx_L0;
7824
7825 /* "bx/bbi/bbi_file.pyx":208
7826 * zoom = 0
7827 * cdef ZoomLevel zoom_level = self._best_zoom_level( zoom )
7828 * if zoom_level is not None: # <<<<<<<<<<<<<<
7829 * return zoom_level._summarize( chrom_id, start, end, summary_size )
7830 * else:
7831 */
7832 }
7833
7834 /* "bx/bbi/bbi_file.pyx":211
7835 * return zoom_level._summarize( chrom_id, start, end, summary_size )
7836 * else:
7837 * return self._summarize_from_full( chrom_id, start, end, summary_size ) # <<<<<<<<<<<<<<
7838 *
7839 * cpdef summarize_from_full( self, char * chrom, bits32 start, bits32 end, int summary_size ):
7840 */
7841 /*else*/ {
7842 __Pyx_XDECREF(__pyx_r);
7843 __pyx_t_13 = __Pyx_PyInt_As_unsigned_int(__pyx_v_chrom_id); if (unlikely((__pyx_t_13 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 211, __pyx_L1_error)
7844 __pyx_t_1 = ((struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self->__pyx_vtab)->_summarize_from_full(__pyx_v_self, __pyx_t_13, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 211, __pyx_L1_error)
7845 __Pyx_GOTREF(__pyx_t_1);
7846 __pyx_r = __pyx_t_1;
7847 __pyx_t_1 = 0;
7848 goto __pyx_L0;
7849 }
7850
7851 /* "bx/bbi/bbi_file.pyx":183
7852 * handler.handle_block( block_data, self )
7853 *
7854 * cpdef summarize( self, object chrom, bits32 start, bits32 end, int summary_size ): # <<<<<<<<<<<<<<
7855 * """
7856 * Gets `summary_size` data points over the regions `chrom`:`start`-`end`.
7857 */
7858
7859 /* function exit code */
7860 __pyx_L1_error:;
7861 __Pyx_XDECREF(__pyx_t_1);
7862 __Pyx_XDECREF(__pyx_t_2);
7863 __Pyx_XDECREF(__pyx_t_3);
7864 __Pyx_XDECREF(__pyx_t_4);
7865 __Pyx_XDECREF(__pyx_t_5);
7866 __Pyx_XDECREF(__pyx_t_6);
7867 __Pyx_XDECREF(__pyx_t_7);
7868 __Pyx_XDECREF(__pyx_t_9);
7869 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.summarize", __pyx_clineno, __pyx_lineno, __pyx_filename);
7870 __pyx_r = 0;
7871 __pyx_L0:;
7872 __Pyx_XDECREF(__pyx_v_bytes_chrom);
7873 __Pyx_XDECREF(__pyx_v_chrom_id);
7874 __Pyx_XDECREF(__pyx_v_chrom_size);
7875 __Pyx_XDECREF((PyObject *)__pyx_v_zoom_level);
7876 __Pyx_XGIVEREF(__pyx_r);
7877 __Pyx_RefNannyFinishContext();
7878 return __pyx_r;
7879 }
7880
7881 /* Python wrapper */
7882 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5summarize(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
7883 static char __pyx_doc_2bx_3bbi_8bbi_file_7BBIFile_4summarize[] = "\n Gets `summary_size` data points over the regions `chrom`:`start`-`end`.\n ";
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5summarize(PyObject * __pyx_v_self,PyObject * __pyx_args,PyObject * __pyx_kwds)7884 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5summarize(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
7885 PyObject *__pyx_v_chrom = 0;
7886 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start;
7887 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end;
7888 int __pyx_v_summary_size;
7889 int __pyx_lineno = 0;
7890 const char *__pyx_filename = NULL;
7891 int __pyx_clineno = 0;
7892 PyObject *__pyx_r = 0;
7893 __Pyx_RefNannyDeclarations
7894 __Pyx_RefNannySetupContext("summarize (wrapper)", 0);
7895 {
7896 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_chrom,&__pyx_n_s_start,&__pyx_n_s_end,&__pyx_n_s_summary_size,0};
7897 PyObject* values[4] = {0,0,0,0};
7898 if (unlikely(__pyx_kwds)) {
7899 Py_ssize_t kw_args;
7900 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
7901 switch (pos_args) {
7902 case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
7903 CYTHON_FALLTHROUGH;
7904 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
7905 CYTHON_FALLTHROUGH;
7906 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
7907 CYTHON_FALLTHROUGH;
7908 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
7909 CYTHON_FALLTHROUGH;
7910 case 0: break;
7911 default: goto __pyx_L5_argtuple_error;
7912 }
7913 kw_args = PyDict_Size(__pyx_kwds);
7914 switch (pos_args) {
7915 case 0:
7916 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_chrom)) != 0)) kw_args--;
7917 else goto __pyx_L5_argtuple_error;
7918 CYTHON_FALLTHROUGH;
7919 case 1:
7920 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_start)) != 0)) kw_args--;
7921 else {
7922 __Pyx_RaiseArgtupleInvalid("summarize", 1, 4, 4, 1); __PYX_ERR(0, 183, __pyx_L3_error)
7923 }
7924 CYTHON_FALLTHROUGH;
7925 case 2:
7926 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_end)) != 0)) kw_args--;
7927 else {
7928 __Pyx_RaiseArgtupleInvalid("summarize", 1, 4, 4, 2); __PYX_ERR(0, 183, __pyx_L3_error)
7929 }
7930 CYTHON_FALLTHROUGH;
7931 case 3:
7932 if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_summary_size)) != 0)) kw_args--;
7933 else {
7934 __Pyx_RaiseArgtupleInvalid("summarize", 1, 4, 4, 3); __PYX_ERR(0, 183, __pyx_L3_error)
7935 }
7936 }
7937 if (unlikely(kw_args > 0)) {
7938 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "summarize") < 0)) __PYX_ERR(0, 183, __pyx_L3_error)
7939 }
7940 } else if (PyTuple_GET_SIZE(__pyx_args) != 4) {
7941 goto __pyx_L5_argtuple_error;
7942 } else {
7943 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
7944 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
7945 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
7946 values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
7947 }
7948 __pyx_v_chrom = values[0];
7949 __pyx_v_start = __Pyx_PyInt_As_unsigned_int(values[1]); if (unlikely((__pyx_v_start == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 183, __pyx_L3_error)
7950 __pyx_v_end = __Pyx_PyInt_As_unsigned_int(values[2]); if (unlikely((__pyx_v_end == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 183, __pyx_L3_error)
7951 __pyx_v_summary_size = __Pyx_PyInt_As_int(values[3]); if (unlikely((__pyx_v_summary_size == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 183, __pyx_L3_error)
7952 }
7953 goto __pyx_L4_argument_unpacking_done;
7954 __pyx_L5_argtuple_error:;
7955 __Pyx_RaiseArgtupleInvalid("summarize", 1, 4, 4, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 183, __pyx_L3_error)
7956 __pyx_L3_error:;
7957 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.summarize", __pyx_clineno, __pyx_lineno, __pyx_filename);
7958 __Pyx_RefNannyFinishContext();
7959 return NULL;
7960 __pyx_L4_argument_unpacking_done:;
7961 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_4summarize(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), __pyx_v_chrom, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size);
7962
7963 /* function exit code */
7964 __Pyx_RefNannyFinishContext();
7965 return __pyx_r;
7966 }
7967
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_4summarize(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_chrom,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,int __pyx_v_summary_size)7968 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_4summarize(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size) {
7969 PyObject *__pyx_r = NULL;
7970 __Pyx_RefNannyDeclarations
7971 PyObject *__pyx_t_1 = NULL;
7972 int __pyx_lineno = 0;
7973 const char *__pyx_filename = NULL;
7974 int __pyx_clineno = 0;
7975 __Pyx_RefNannySetupContext("summarize", 0);
7976 __Pyx_XDECREF(__pyx_r);
7977 __pyx_t_1 = __pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize(__pyx_v_self, __pyx_v_chrom, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 183, __pyx_L1_error)
7978 __Pyx_GOTREF(__pyx_t_1);
7979 __pyx_r = __pyx_t_1;
7980 __pyx_t_1 = 0;
7981 goto __pyx_L0;
7982
7983 /* function exit code */
7984 __pyx_L1_error:;
7985 __Pyx_XDECREF(__pyx_t_1);
7986 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.summarize", __pyx_clineno, __pyx_lineno, __pyx_filename);
7987 __pyx_r = NULL;
7988 __pyx_L0:;
7989 __Pyx_XGIVEREF(__pyx_r);
7990 __Pyx_RefNannyFinishContext();
7991 return __pyx_r;
7992 }
7993
7994 /* "bx/bbi/bbi_file.pyx":213
7995 * return self._summarize_from_full( chrom_id, start, end, summary_size )
7996 *
7997 * cpdef summarize_from_full( self, char * chrom, bits32 start, bits32 end, int summary_size ): # <<<<<<<<<<<<<<
7998 * """
7999 * Gets `summary_size` data points over the regions `chrom`:`start`-`end`,
8000 */
8001
8002 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7summarize_from_full(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize_from_full(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,char * __pyx_v_chrom,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,int __pyx_v_summary_size,int __pyx_skip_dispatch)8003 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize_from_full(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, char *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size, int __pyx_skip_dispatch) {
8004 PyObject *__pyx_v_chrom_id = NULL;
8005 CYTHON_UNUSED PyObject *__pyx_v_chrom_size = NULL;
8006 PyObject *__pyx_r = NULL;
8007 __Pyx_RefNannyDeclarations
8008 PyObject *__pyx_t_1 = NULL;
8009 PyObject *__pyx_t_2 = NULL;
8010 PyObject *__pyx_t_3 = NULL;
8011 PyObject *__pyx_t_4 = NULL;
8012 PyObject *__pyx_t_5 = NULL;
8013 PyObject *__pyx_t_6 = NULL;
8014 PyObject *__pyx_t_7 = NULL;
8015 PyObject *__pyx_t_8 = NULL;
8016 int __pyx_t_9;
8017 PyObject *__pyx_t_10 = NULL;
8018 int __pyx_t_11;
8019 PyObject *(*__pyx_t_12)(PyObject *);
8020 int __pyx_t_13;
8021 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_14;
8022 int __pyx_lineno = 0;
8023 const char *__pyx_filename = NULL;
8024 int __pyx_clineno = 0;
8025 __Pyx_RefNannySetupContext("summarize_from_full", 0);
8026 /* Check if called by wrapper */
8027 if (unlikely(__pyx_skip_dispatch)) ;
8028 /* Check if overridden in Python */
8029 else if (unlikely((Py_TYPE(((PyObject *)__pyx_v_self))->tp_dictoffset != 0) || (Py_TYPE(((PyObject *)__pyx_v_self))->tp_flags & (Py_TPFLAGS_IS_ABSTRACT | Py_TPFLAGS_HEAPTYPE)))) {
8030 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
8031 static PY_UINT64_T __pyx_tp_dict_version = __PYX_DICT_VERSION_INIT, __pyx_obj_dict_version = __PYX_DICT_VERSION_INIT;
8032 if (unlikely(!__Pyx_object_dict_version_matches(((PyObject *)__pyx_v_self), __pyx_tp_dict_version, __pyx_obj_dict_version))) {
8033 PY_UINT64_T __pyx_type_dict_guard = __Pyx_get_tp_dict_version(((PyObject *)__pyx_v_self));
8034 #endif
8035 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_summarize_from_full); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 213, __pyx_L1_error)
8036 __Pyx_GOTREF(__pyx_t_1);
8037 if (!PyCFunction_Check(__pyx_t_1) || (PyCFunction_GET_FUNCTION(__pyx_t_1) != (PyCFunction)(void*)__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7summarize_from_full)) {
8038 __Pyx_XDECREF(__pyx_r);
8039 __pyx_t_3 = __Pyx_PyBytes_FromString(__pyx_v_chrom); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 213, __pyx_L1_error)
8040 __Pyx_GOTREF(__pyx_t_3);
8041 __pyx_t_4 = __Pyx_PyInt_From_unsigned_int(__pyx_v_start); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 213, __pyx_L1_error)
8042 __Pyx_GOTREF(__pyx_t_4);
8043 __pyx_t_5 = __Pyx_PyInt_From_unsigned_int(__pyx_v_end); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 213, __pyx_L1_error)
8044 __Pyx_GOTREF(__pyx_t_5);
8045 __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_summary_size); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 213, __pyx_L1_error)
8046 __Pyx_GOTREF(__pyx_t_6);
8047 __Pyx_INCREF(__pyx_t_1);
8048 __pyx_t_7 = __pyx_t_1; __pyx_t_8 = NULL;
8049 __pyx_t_9 = 0;
8050 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_7))) {
8051 __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_7);
8052 if (likely(__pyx_t_8)) {
8053 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
8054 __Pyx_INCREF(__pyx_t_8);
8055 __Pyx_INCREF(function);
8056 __Pyx_DECREF_SET(__pyx_t_7, function);
8057 __pyx_t_9 = 1;
8058 }
8059 }
8060 #if CYTHON_FAST_PYCALL
8061 if (PyFunction_Check(__pyx_t_7)) {
8062 PyObject *__pyx_temp[5] = {__pyx_t_8, __pyx_t_3, __pyx_t_4, __pyx_t_5, __pyx_t_6};
8063 __pyx_t_2 = __Pyx_PyFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_9, 4+__pyx_t_9); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 213, __pyx_L1_error)
8064 __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
8065 __Pyx_GOTREF(__pyx_t_2);
8066 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
8067 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
8068 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
8069 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
8070 } else
8071 #endif
8072 #if CYTHON_FAST_PYCCALL
8073 if (__Pyx_PyFastCFunction_Check(__pyx_t_7)) {
8074 PyObject *__pyx_temp[5] = {__pyx_t_8, __pyx_t_3, __pyx_t_4, __pyx_t_5, __pyx_t_6};
8075 __pyx_t_2 = __Pyx_PyCFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_9, 4+__pyx_t_9); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 213, __pyx_L1_error)
8076 __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
8077 __Pyx_GOTREF(__pyx_t_2);
8078 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
8079 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
8080 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
8081 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
8082 } else
8083 #endif
8084 {
8085 __pyx_t_10 = PyTuple_New(4+__pyx_t_9); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 213, __pyx_L1_error)
8086 __Pyx_GOTREF(__pyx_t_10);
8087 if (__pyx_t_8) {
8088 __Pyx_GIVEREF(__pyx_t_8); PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_t_8); __pyx_t_8 = NULL;
8089 }
8090 __Pyx_GIVEREF(__pyx_t_3);
8091 PyTuple_SET_ITEM(__pyx_t_10, 0+__pyx_t_9, __pyx_t_3);
8092 __Pyx_GIVEREF(__pyx_t_4);
8093 PyTuple_SET_ITEM(__pyx_t_10, 1+__pyx_t_9, __pyx_t_4);
8094 __Pyx_GIVEREF(__pyx_t_5);
8095 PyTuple_SET_ITEM(__pyx_t_10, 2+__pyx_t_9, __pyx_t_5);
8096 __Pyx_GIVEREF(__pyx_t_6);
8097 PyTuple_SET_ITEM(__pyx_t_10, 3+__pyx_t_9, __pyx_t_6);
8098 __pyx_t_3 = 0;
8099 __pyx_t_4 = 0;
8100 __pyx_t_5 = 0;
8101 __pyx_t_6 = 0;
8102 __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_10, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 213, __pyx_L1_error)
8103 __Pyx_GOTREF(__pyx_t_2);
8104 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
8105 }
8106 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
8107 __pyx_r = __pyx_t_2;
8108 __pyx_t_2 = 0;
8109 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8110 goto __pyx_L0;
8111 }
8112 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
8113 __pyx_tp_dict_version = __Pyx_get_tp_dict_version(((PyObject *)__pyx_v_self));
8114 __pyx_obj_dict_version = __Pyx_get_object_dict_version(((PyObject *)__pyx_v_self));
8115 if (unlikely(__pyx_type_dict_guard != __pyx_tp_dict_version)) {
8116 __pyx_tp_dict_version = __pyx_obj_dict_version = __PYX_DICT_VERSION_INIT;
8117 }
8118 #endif
8119 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8120 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
8121 }
8122 #endif
8123 }
8124
8125 /* "bx/bbi/bbi_file.pyx":218
8126 * always using the raw data points
8127 * """
8128 * if start >= end: # <<<<<<<<<<<<<<
8129 * return None
8130 * chrom_id, chrom_size = self._get_chrom_id_and_size( chrom )
8131 */
8132 __pyx_t_11 = ((__pyx_v_start >= __pyx_v_end) != 0);
8133 if (__pyx_t_11) {
8134
8135 /* "bx/bbi/bbi_file.pyx":219
8136 * """
8137 * if start >= end:
8138 * return None # <<<<<<<<<<<<<<
8139 * chrom_id, chrom_size = self._get_chrom_id_and_size( chrom )
8140 * if chrom_id is None:
8141 */
8142 __Pyx_XDECREF(__pyx_r);
8143 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
8144 goto __pyx_L0;
8145
8146 /* "bx/bbi/bbi_file.pyx":218
8147 * always using the raw data points
8148 * """
8149 * if start >= end: # <<<<<<<<<<<<<<
8150 * return None
8151 * chrom_id, chrom_size = self._get_chrom_id_and_size( chrom )
8152 */
8153 }
8154
8155 /* "bx/bbi/bbi_file.pyx":220
8156 * if start >= end:
8157 * return None
8158 * chrom_id, chrom_size = self._get_chrom_id_and_size( chrom ) # <<<<<<<<<<<<<<
8159 * if chrom_id is None:
8160 * return None
8161 */
8162 __pyx_t_1 = ((struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self->__pyx_vtab)->_get_chrom_id_and_size(__pyx_v_self, __pyx_v_chrom); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 220, __pyx_L1_error)
8163 __Pyx_GOTREF(__pyx_t_1);
8164 if ((likely(PyTuple_CheckExact(__pyx_t_1))) || (PyList_CheckExact(__pyx_t_1))) {
8165 PyObject* sequence = __pyx_t_1;
8166 Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
8167 if (unlikely(size != 2)) {
8168 if (size > 2) __Pyx_RaiseTooManyValuesError(2);
8169 else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
8170 __PYX_ERR(0, 220, __pyx_L1_error)
8171 }
8172 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
8173 if (likely(PyTuple_CheckExact(sequence))) {
8174 __pyx_t_2 = PyTuple_GET_ITEM(sequence, 0);
8175 __pyx_t_7 = PyTuple_GET_ITEM(sequence, 1);
8176 } else {
8177 __pyx_t_2 = PyList_GET_ITEM(sequence, 0);
8178 __pyx_t_7 = PyList_GET_ITEM(sequence, 1);
8179 }
8180 __Pyx_INCREF(__pyx_t_2);
8181 __Pyx_INCREF(__pyx_t_7);
8182 #else
8183 __pyx_t_2 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 220, __pyx_L1_error)
8184 __Pyx_GOTREF(__pyx_t_2);
8185 __pyx_t_7 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 220, __pyx_L1_error)
8186 __Pyx_GOTREF(__pyx_t_7);
8187 #endif
8188 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8189 } else {
8190 Py_ssize_t index = -1;
8191 __pyx_t_10 = PyObject_GetIter(__pyx_t_1); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 220, __pyx_L1_error)
8192 __Pyx_GOTREF(__pyx_t_10);
8193 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8194 __pyx_t_12 = Py_TYPE(__pyx_t_10)->tp_iternext;
8195 index = 0; __pyx_t_2 = __pyx_t_12(__pyx_t_10); if (unlikely(!__pyx_t_2)) goto __pyx_L4_unpacking_failed;
8196 __Pyx_GOTREF(__pyx_t_2);
8197 index = 1; __pyx_t_7 = __pyx_t_12(__pyx_t_10); if (unlikely(!__pyx_t_7)) goto __pyx_L4_unpacking_failed;
8198 __Pyx_GOTREF(__pyx_t_7);
8199 if (__Pyx_IternextUnpackEndCheck(__pyx_t_12(__pyx_t_10), 2) < 0) __PYX_ERR(0, 220, __pyx_L1_error)
8200 __pyx_t_12 = NULL;
8201 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
8202 goto __pyx_L5_unpacking_done;
8203 __pyx_L4_unpacking_failed:;
8204 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
8205 __pyx_t_12 = NULL;
8206 if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
8207 __PYX_ERR(0, 220, __pyx_L1_error)
8208 __pyx_L5_unpacking_done:;
8209 }
8210 __pyx_v_chrom_id = __pyx_t_2;
8211 __pyx_t_2 = 0;
8212 __pyx_v_chrom_size = __pyx_t_7;
8213 __pyx_t_7 = 0;
8214
8215 /* "bx/bbi/bbi_file.pyx":221
8216 * return None
8217 * chrom_id, chrom_size = self._get_chrom_id_and_size( chrom )
8218 * if chrom_id is None: # <<<<<<<<<<<<<<
8219 * return None
8220 * # Return value will be a structured array (rather than an array
8221 */
8222 __pyx_t_11 = (__pyx_v_chrom_id == Py_None);
8223 __pyx_t_13 = (__pyx_t_11 != 0);
8224 if (__pyx_t_13) {
8225
8226 /* "bx/bbi/bbi_file.pyx":222
8227 * chrom_id, chrom_size = self._get_chrom_id_and_size( chrom )
8228 * if chrom_id is None:
8229 * return None # <<<<<<<<<<<<<<
8230 * # Return value will be a structured array (rather than an array
8231 * # of summary element structures
8232 */
8233 __Pyx_XDECREF(__pyx_r);
8234 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
8235 goto __pyx_L0;
8236
8237 /* "bx/bbi/bbi_file.pyx":221
8238 * return None
8239 * chrom_id, chrom_size = self._get_chrom_id_and_size( chrom )
8240 * if chrom_id is None: # <<<<<<<<<<<<<<
8241 * return None
8242 * # Return value will be a structured array (rather than an array
8243 */
8244 }
8245
8246 /* "bx/bbi/bbi_file.pyx":225
8247 * # Return value will be a structured array (rather than an array
8248 * # of summary element structures
8249 * return self._summarize_from_full( chrom_id, start, end, summary_size ) # <<<<<<<<<<<<<<
8250 *
8251 * cpdef query( self, object chrom, bits32 start, bits32 end, int summary_size ):
8252 */
8253 __Pyx_XDECREF(__pyx_r);
8254 __pyx_t_14 = __Pyx_PyInt_As_unsigned_int(__pyx_v_chrom_id); if (unlikely((__pyx_t_14 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 225, __pyx_L1_error)
8255 __pyx_t_1 = ((struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self->__pyx_vtab)->_summarize_from_full(__pyx_v_self, __pyx_t_14, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 225, __pyx_L1_error)
8256 __Pyx_GOTREF(__pyx_t_1);
8257 __pyx_r = __pyx_t_1;
8258 __pyx_t_1 = 0;
8259 goto __pyx_L0;
8260
8261 /* "bx/bbi/bbi_file.pyx":213
8262 * return self._summarize_from_full( chrom_id, start, end, summary_size )
8263 *
8264 * cpdef summarize_from_full( self, char * chrom, bits32 start, bits32 end, int summary_size ): # <<<<<<<<<<<<<<
8265 * """
8266 * Gets `summary_size` data points over the regions `chrom`:`start`-`end`,
8267 */
8268
8269 /* function exit code */
8270 __pyx_L1_error:;
8271 __Pyx_XDECREF(__pyx_t_1);
8272 __Pyx_XDECREF(__pyx_t_2);
8273 __Pyx_XDECREF(__pyx_t_3);
8274 __Pyx_XDECREF(__pyx_t_4);
8275 __Pyx_XDECREF(__pyx_t_5);
8276 __Pyx_XDECREF(__pyx_t_6);
8277 __Pyx_XDECREF(__pyx_t_7);
8278 __Pyx_XDECREF(__pyx_t_8);
8279 __Pyx_XDECREF(__pyx_t_10);
8280 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.summarize_from_full", __pyx_clineno, __pyx_lineno, __pyx_filename);
8281 __pyx_r = 0;
8282 __pyx_L0:;
8283 __Pyx_XDECREF(__pyx_v_chrom_id);
8284 __Pyx_XDECREF(__pyx_v_chrom_size);
8285 __Pyx_XGIVEREF(__pyx_r);
8286 __Pyx_RefNannyFinishContext();
8287 return __pyx_r;
8288 }
8289
8290 /* Python wrapper */
8291 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7summarize_from_full(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
8292 static char __pyx_doc_2bx_3bbi_8bbi_file_7BBIFile_6summarize_from_full[] = "\n Gets `summary_size` data points over the regions `chrom`:`start`-`end`, \n always using the raw data points\n ";
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7summarize_from_full(PyObject * __pyx_v_self,PyObject * __pyx_args,PyObject * __pyx_kwds)8293 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7summarize_from_full(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
8294 char *__pyx_v_chrom;
8295 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start;
8296 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end;
8297 int __pyx_v_summary_size;
8298 int __pyx_lineno = 0;
8299 const char *__pyx_filename = NULL;
8300 int __pyx_clineno = 0;
8301 PyObject *__pyx_r = 0;
8302 __Pyx_RefNannyDeclarations
8303 __Pyx_RefNannySetupContext("summarize_from_full (wrapper)", 0);
8304 {
8305 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_chrom,&__pyx_n_s_start,&__pyx_n_s_end,&__pyx_n_s_summary_size,0};
8306 PyObject* values[4] = {0,0,0,0};
8307 if (unlikely(__pyx_kwds)) {
8308 Py_ssize_t kw_args;
8309 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
8310 switch (pos_args) {
8311 case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
8312 CYTHON_FALLTHROUGH;
8313 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
8314 CYTHON_FALLTHROUGH;
8315 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
8316 CYTHON_FALLTHROUGH;
8317 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
8318 CYTHON_FALLTHROUGH;
8319 case 0: break;
8320 default: goto __pyx_L5_argtuple_error;
8321 }
8322 kw_args = PyDict_Size(__pyx_kwds);
8323 switch (pos_args) {
8324 case 0:
8325 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_chrom)) != 0)) kw_args--;
8326 else goto __pyx_L5_argtuple_error;
8327 CYTHON_FALLTHROUGH;
8328 case 1:
8329 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_start)) != 0)) kw_args--;
8330 else {
8331 __Pyx_RaiseArgtupleInvalid("summarize_from_full", 1, 4, 4, 1); __PYX_ERR(0, 213, __pyx_L3_error)
8332 }
8333 CYTHON_FALLTHROUGH;
8334 case 2:
8335 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_end)) != 0)) kw_args--;
8336 else {
8337 __Pyx_RaiseArgtupleInvalid("summarize_from_full", 1, 4, 4, 2); __PYX_ERR(0, 213, __pyx_L3_error)
8338 }
8339 CYTHON_FALLTHROUGH;
8340 case 3:
8341 if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_summary_size)) != 0)) kw_args--;
8342 else {
8343 __Pyx_RaiseArgtupleInvalid("summarize_from_full", 1, 4, 4, 3); __PYX_ERR(0, 213, __pyx_L3_error)
8344 }
8345 }
8346 if (unlikely(kw_args > 0)) {
8347 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "summarize_from_full") < 0)) __PYX_ERR(0, 213, __pyx_L3_error)
8348 }
8349 } else if (PyTuple_GET_SIZE(__pyx_args) != 4) {
8350 goto __pyx_L5_argtuple_error;
8351 } else {
8352 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
8353 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
8354 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
8355 values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
8356 }
8357 __pyx_v_chrom = __Pyx_PyObject_AsWritableString(values[0]); if (unlikely((!__pyx_v_chrom) && PyErr_Occurred())) __PYX_ERR(0, 213, __pyx_L3_error)
8358 __pyx_v_start = __Pyx_PyInt_As_unsigned_int(values[1]); if (unlikely((__pyx_v_start == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 213, __pyx_L3_error)
8359 __pyx_v_end = __Pyx_PyInt_As_unsigned_int(values[2]); if (unlikely((__pyx_v_end == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 213, __pyx_L3_error)
8360 __pyx_v_summary_size = __Pyx_PyInt_As_int(values[3]); if (unlikely((__pyx_v_summary_size == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 213, __pyx_L3_error)
8361 }
8362 goto __pyx_L4_argument_unpacking_done;
8363 __pyx_L5_argtuple_error:;
8364 __Pyx_RaiseArgtupleInvalid("summarize_from_full", 1, 4, 4, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 213, __pyx_L3_error)
8365 __pyx_L3_error:;
8366 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.summarize_from_full", __pyx_clineno, __pyx_lineno, __pyx_filename);
8367 __Pyx_RefNannyFinishContext();
8368 return NULL;
8369 __pyx_L4_argument_unpacking_done:;
8370 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_6summarize_from_full(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), __pyx_v_chrom, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size);
8371
8372 /* function exit code */
8373 __Pyx_RefNannyFinishContext();
8374 return __pyx_r;
8375 }
8376
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_6summarize_from_full(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,char * __pyx_v_chrom,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,int __pyx_v_summary_size)8377 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_6summarize_from_full(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, char *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size) {
8378 PyObject *__pyx_r = NULL;
8379 __Pyx_RefNannyDeclarations
8380 PyObject *__pyx_t_1 = NULL;
8381 int __pyx_lineno = 0;
8382 const char *__pyx_filename = NULL;
8383 int __pyx_clineno = 0;
8384 __Pyx_RefNannySetupContext("summarize_from_full", 0);
8385 __Pyx_XDECREF(__pyx_r);
8386 __pyx_t_1 = __pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize_from_full(__pyx_v_self, __pyx_v_chrom, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 213, __pyx_L1_error)
8387 __Pyx_GOTREF(__pyx_t_1);
8388 __pyx_r = __pyx_t_1;
8389 __pyx_t_1 = 0;
8390 goto __pyx_L0;
8391
8392 /* function exit code */
8393 __pyx_L1_error:;
8394 __Pyx_XDECREF(__pyx_t_1);
8395 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.summarize_from_full", __pyx_clineno, __pyx_lineno, __pyx_filename);
8396 __pyx_r = NULL;
8397 __pyx_L0:;
8398 __Pyx_XGIVEREF(__pyx_r);
8399 __Pyx_RefNannyFinishContext();
8400 return __pyx_r;
8401 }
8402
8403 /* "bx/bbi/bbi_file.pyx":227
8404 * return self._summarize_from_full( chrom_id, start, end, summary_size )
8405 *
8406 * cpdef query( self, object chrom, bits32 start, bits32 end, int summary_size ): # <<<<<<<<<<<<<<
8407 * """
8408 * Provides a different view of summary for region, a list of dictionaries
8409 */
8410
8411 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_9query(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_chrom,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,int __pyx_v_summary_size,int __pyx_skip_dispatch)8412 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size, int __pyx_skip_dispatch) {
8413 PyObject *__pyx_v_results = NULL;
8414 PyObject *__pyx_v_rval = NULL;
8415 int __pyx_v_i;
8416 PyObject *__pyx_v_sum_data = NULL;
8417 PyObject *__pyx_v_valid_count = NULL;
8418 PyObject *__pyx_v_mean = NULL;
8419 PyObject *__pyx_v_coverage = NULL;
8420 PyObject *__pyx_v_variance = NULL;
8421 PyObject *__pyx_v_std_dev = NULL;
8422 PyObject *__pyx_r = NULL;
8423 __Pyx_RefNannyDeclarations
8424 PyObject *__pyx_t_1 = NULL;
8425 PyObject *__pyx_t_2 = NULL;
8426 PyObject *__pyx_t_3 = NULL;
8427 PyObject *__pyx_t_4 = NULL;
8428 PyObject *__pyx_t_5 = NULL;
8429 PyObject *__pyx_t_6 = NULL;
8430 PyObject *__pyx_t_7 = NULL;
8431 int __pyx_t_8;
8432 PyObject *__pyx_t_9 = NULL;
8433 int __pyx_t_10;
8434 int __pyx_t_11;
8435 int __pyx_t_12;
8436 int __pyx_t_13;
8437 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_14;
8438 long __pyx_t_15;
8439 int __pyx_t_16;
8440 int __pyx_lineno = 0;
8441 const char *__pyx_filename = NULL;
8442 int __pyx_clineno = 0;
8443 __Pyx_RefNannySetupContext("query", 0);
8444 /* Check if called by wrapper */
8445 if (unlikely(__pyx_skip_dispatch)) ;
8446 /* Check if overridden in Python */
8447 else if (unlikely((Py_TYPE(((PyObject *)__pyx_v_self))->tp_dictoffset != 0) || (Py_TYPE(((PyObject *)__pyx_v_self))->tp_flags & (Py_TPFLAGS_IS_ABSTRACT | Py_TPFLAGS_HEAPTYPE)))) {
8448 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
8449 static PY_UINT64_T __pyx_tp_dict_version = __PYX_DICT_VERSION_INIT, __pyx_obj_dict_version = __PYX_DICT_VERSION_INIT;
8450 if (unlikely(!__Pyx_object_dict_version_matches(((PyObject *)__pyx_v_self), __pyx_tp_dict_version, __pyx_obj_dict_version))) {
8451 PY_UINT64_T __pyx_type_dict_guard = __Pyx_get_tp_dict_version(((PyObject *)__pyx_v_self));
8452 #endif
8453 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_query); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 227, __pyx_L1_error)
8454 __Pyx_GOTREF(__pyx_t_1);
8455 if (!PyCFunction_Check(__pyx_t_1) || (PyCFunction_GET_FUNCTION(__pyx_t_1) != (PyCFunction)(void*)__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_9query)) {
8456 __Pyx_XDECREF(__pyx_r);
8457 __pyx_t_3 = __Pyx_PyInt_From_unsigned_int(__pyx_v_start); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 227, __pyx_L1_error)
8458 __Pyx_GOTREF(__pyx_t_3);
8459 __pyx_t_4 = __Pyx_PyInt_From_unsigned_int(__pyx_v_end); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 227, __pyx_L1_error)
8460 __Pyx_GOTREF(__pyx_t_4);
8461 __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_summary_size); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 227, __pyx_L1_error)
8462 __Pyx_GOTREF(__pyx_t_5);
8463 __Pyx_INCREF(__pyx_t_1);
8464 __pyx_t_6 = __pyx_t_1; __pyx_t_7 = NULL;
8465 __pyx_t_8 = 0;
8466 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_6))) {
8467 __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_6);
8468 if (likely(__pyx_t_7)) {
8469 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
8470 __Pyx_INCREF(__pyx_t_7);
8471 __Pyx_INCREF(function);
8472 __Pyx_DECREF_SET(__pyx_t_6, function);
8473 __pyx_t_8 = 1;
8474 }
8475 }
8476 #if CYTHON_FAST_PYCALL
8477 if (PyFunction_Check(__pyx_t_6)) {
8478 PyObject *__pyx_temp[5] = {__pyx_t_7, __pyx_v_chrom, __pyx_t_3, __pyx_t_4, __pyx_t_5};
8479 __pyx_t_2 = __Pyx_PyFunction_FastCall(__pyx_t_6, __pyx_temp+1-__pyx_t_8, 4+__pyx_t_8); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 227, __pyx_L1_error)
8480 __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
8481 __Pyx_GOTREF(__pyx_t_2);
8482 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
8483 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
8484 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
8485 } else
8486 #endif
8487 #if CYTHON_FAST_PYCCALL
8488 if (__Pyx_PyFastCFunction_Check(__pyx_t_6)) {
8489 PyObject *__pyx_temp[5] = {__pyx_t_7, __pyx_v_chrom, __pyx_t_3, __pyx_t_4, __pyx_t_5};
8490 __pyx_t_2 = __Pyx_PyCFunction_FastCall(__pyx_t_6, __pyx_temp+1-__pyx_t_8, 4+__pyx_t_8); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 227, __pyx_L1_error)
8491 __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
8492 __Pyx_GOTREF(__pyx_t_2);
8493 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
8494 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
8495 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
8496 } else
8497 #endif
8498 {
8499 __pyx_t_9 = PyTuple_New(4+__pyx_t_8); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 227, __pyx_L1_error)
8500 __Pyx_GOTREF(__pyx_t_9);
8501 if (__pyx_t_7) {
8502 __Pyx_GIVEREF(__pyx_t_7); PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_7); __pyx_t_7 = NULL;
8503 }
8504 __Pyx_INCREF(__pyx_v_chrom);
8505 __Pyx_GIVEREF(__pyx_v_chrom);
8506 PyTuple_SET_ITEM(__pyx_t_9, 0+__pyx_t_8, __pyx_v_chrom);
8507 __Pyx_GIVEREF(__pyx_t_3);
8508 PyTuple_SET_ITEM(__pyx_t_9, 1+__pyx_t_8, __pyx_t_3);
8509 __Pyx_GIVEREF(__pyx_t_4);
8510 PyTuple_SET_ITEM(__pyx_t_9, 2+__pyx_t_8, __pyx_t_4);
8511 __Pyx_GIVEREF(__pyx_t_5);
8512 PyTuple_SET_ITEM(__pyx_t_9, 3+__pyx_t_8, __pyx_t_5);
8513 __pyx_t_3 = 0;
8514 __pyx_t_4 = 0;
8515 __pyx_t_5 = 0;
8516 __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_6, __pyx_t_9, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 227, __pyx_L1_error)
8517 __Pyx_GOTREF(__pyx_t_2);
8518 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
8519 }
8520 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
8521 __pyx_r = __pyx_t_2;
8522 __pyx_t_2 = 0;
8523 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8524 goto __pyx_L0;
8525 }
8526 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
8527 __pyx_tp_dict_version = __Pyx_get_tp_dict_version(((PyObject *)__pyx_v_self));
8528 __pyx_obj_dict_version = __Pyx_get_object_dict_version(((PyObject *)__pyx_v_self));
8529 if (unlikely(__pyx_type_dict_guard != __pyx_tp_dict_version)) {
8530 __pyx_tp_dict_version = __pyx_obj_dict_version = __PYX_DICT_VERSION_INIT;
8531 }
8532 #endif
8533 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8534 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
8535 }
8536 #endif
8537 }
8538
8539 /* "bx/bbi/bbi_file.pyx":233
8540 * """
8541 *
8542 * if end > 2147483647 or start < 0: # <<<<<<<<<<<<<<
8543 * raise ValueError
8544 * results = self.summarize(chrom, start, end, summary_size)
8545 */
8546 __pyx_t_11 = ((__pyx_v_end > 0x7FFFFFFF) != 0);
8547 if (!__pyx_t_11) {
8548 } else {
8549 __pyx_t_10 = __pyx_t_11;
8550 goto __pyx_L4_bool_binop_done;
8551 }
8552 __pyx_t_11 = ((__pyx_v_start < 0) != 0);
8553 __pyx_t_10 = __pyx_t_11;
8554 __pyx_L4_bool_binop_done:;
8555 if (unlikely(__pyx_t_10)) {
8556
8557 /* "bx/bbi/bbi_file.pyx":234
8558 *
8559 * if end > 2147483647 or start < 0:
8560 * raise ValueError # <<<<<<<<<<<<<<
8561 * results = self.summarize(chrom, start, end, summary_size)
8562 *
8563 */
8564 __Pyx_Raise(__pyx_builtin_ValueError, 0, 0, 0);
8565 __PYX_ERR(0, 234, __pyx_L1_error)
8566
8567 /* "bx/bbi/bbi_file.pyx":233
8568 * """
8569 *
8570 * if end > 2147483647 or start < 0: # <<<<<<<<<<<<<<
8571 * raise ValueError
8572 * results = self.summarize(chrom, start, end, summary_size)
8573 */
8574 }
8575
8576 /* "bx/bbi/bbi_file.pyx":235
8577 * if end > 2147483647 or start < 0:
8578 * raise ValueError
8579 * results = self.summarize(chrom, start, end, summary_size) # <<<<<<<<<<<<<<
8580 *
8581 * if not results:
8582 */
8583 __pyx_t_1 = ((struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self->__pyx_vtab)->summarize(__pyx_v_self, __pyx_v_chrom, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 235, __pyx_L1_error)
8584 __Pyx_GOTREF(__pyx_t_1);
8585 __pyx_v_results = __pyx_t_1;
8586 __pyx_t_1 = 0;
8587
8588 /* "bx/bbi/bbi_file.pyx":237
8589 * results = self.summarize(chrom, start, end, summary_size)
8590 *
8591 * if not results: # <<<<<<<<<<<<<<
8592 * return None
8593 *
8594 */
8595 __pyx_t_10 = __Pyx_PyObject_IsTrue(__pyx_v_results); if (unlikely(__pyx_t_10 < 0)) __PYX_ERR(0, 237, __pyx_L1_error)
8596 __pyx_t_11 = ((!__pyx_t_10) != 0);
8597 if (__pyx_t_11) {
8598
8599 /* "bx/bbi/bbi_file.pyx":238
8600 *
8601 * if not results:
8602 * return None # <<<<<<<<<<<<<<
8603 *
8604 * rval = []
8605 */
8606 __Pyx_XDECREF(__pyx_r);
8607 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
8608 goto __pyx_L0;
8609
8610 /* "bx/bbi/bbi_file.pyx":237
8611 * results = self.summarize(chrom, start, end, summary_size)
8612 *
8613 * if not results: # <<<<<<<<<<<<<<
8614 * return None
8615 *
8616 */
8617 }
8618
8619 /* "bx/bbi/bbi_file.pyx":240
8620 * return None
8621 *
8622 * rval = [] # <<<<<<<<<<<<<<
8623 * for i in range(summary_size):
8624 * sum_data = results.sum_data[i]
8625 */
8626 __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 240, __pyx_L1_error)
8627 __Pyx_GOTREF(__pyx_t_1);
8628 __pyx_v_rval = ((PyObject*)__pyx_t_1);
8629 __pyx_t_1 = 0;
8630
8631 /* "bx/bbi/bbi_file.pyx":241
8632 *
8633 * rval = []
8634 * for i in range(summary_size): # <<<<<<<<<<<<<<
8635 * sum_data = results.sum_data[i]
8636 * valid_count = results.valid_count[i]
8637 */
8638 __pyx_t_8 = __pyx_v_summary_size;
8639 __pyx_t_12 = __pyx_t_8;
8640 for (__pyx_t_13 = 0; __pyx_t_13 < __pyx_t_12; __pyx_t_13+=1) {
8641 __pyx_v_i = __pyx_t_13;
8642
8643 /* "bx/bbi/bbi_file.pyx":242
8644 * rval = []
8645 * for i in range(summary_size):
8646 * sum_data = results.sum_data[i] # <<<<<<<<<<<<<<
8647 * valid_count = results.valid_count[i]
8648 * mean = sum_data / valid_count
8649 */
8650 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_results, __pyx_n_s_sum_data); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 242, __pyx_L1_error)
8651 __Pyx_GOTREF(__pyx_t_1);
8652 __pyx_t_2 = __Pyx_GetItemInt(__pyx_t_1, __pyx_v_i, int, 1, __Pyx_PyInt_From_int, 0, 1, 1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 242, __pyx_L1_error)
8653 __Pyx_GOTREF(__pyx_t_2);
8654 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8655 __Pyx_XDECREF_SET(__pyx_v_sum_data, __pyx_t_2);
8656 __pyx_t_2 = 0;
8657
8658 /* "bx/bbi/bbi_file.pyx":243
8659 * for i in range(summary_size):
8660 * sum_data = results.sum_data[i]
8661 * valid_count = results.valid_count[i] # <<<<<<<<<<<<<<
8662 * mean = sum_data / valid_count
8663 * coverage = <double> summary_size / (end - start) * valid_count
8664 */
8665 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_results, __pyx_n_s_valid_count); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 243, __pyx_L1_error)
8666 __Pyx_GOTREF(__pyx_t_2);
8667 __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_2, __pyx_v_i, int, 1, __Pyx_PyInt_From_int, 0, 1, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 243, __pyx_L1_error)
8668 __Pyx_GOTREF(__pyx_t_1);
8669 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
8670 __Pyx_XDECREF_SET(__pyx_v_valid_count, __pyx_t_1);
8671 __pyx_t_1 = 0;
8672
8673 /* "bx/bbi/bbi_file.pyx":244
8674 * sum_data = results.sum_data[i]
8675 * valid_count = results.valid_count[i]
8676 * mean = sum_data / valid_count # <<<<<<<<<<<<<<
8677 * coverage = <double> summary_size / (end - start) * valid_count
8678 *
8679 */
8680 __pyx_t_1 = __Pyx_PyNumber_Divide(__pyx_v_sum_data, __pyx_v_valid_count); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 244, __pyx_L1_error)
8681 __Pyx_GOTREF(__pyx_t_1);
8682 __Pyx_XDECREF_SET(__pyx_v_mean, __pyx_t_1);
8683 __pyx_t_1 = 0;
8684
8685 /* "bx/bbi/bbi_file.pyx":245
8686 * valid_count = results.valid_count[i]
8687 * mean = sum_data / valid_count
8688 * coverage = <double> summary_size / (end - start) * valid_count # <<<<<<<<<<<<<<
8689 *
8690 * # print results.sum_squares[i], sum_data, valid_count
8691 */
8692 __pyx_t_14 = (__pyx_v_end - __pyx_v_start);
8693 if (unlikely(__pyx_t_14 == 0)) {
8694 PyErr_SetString(PyExc_ZeroDivisionError, "float division");
8695 __PYX_ERR(0, 245, __pyx_L1_error)
8696 }
8697 __pyx_t_1 = PyFloat_FromDouble((((double)__pyx_v_summary_size) / __pyx_t_14)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 245, __pyx_L1_error)
8698 __Pyx_GOTREF(__pyx_t_1);
8699 __pyx_t_2 = PyNumber_Multiply(__pyx_t_1, __pyx_v_valid_count); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 245, __pyx_L1_error)
8700 __Pyx_GOTREF(__pyx_t_2);
8701 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8702 __Pyx_XDECREF_SET(__pyx_v_coverage, __pyx_t_2);
8703 __pyx_t_2 = 0;
8704
8705 /* "bx/bbi/bbi_file.pyx":248
8706 *
8707 * # print results.sum_squares[i], sum_data, valid_count
8708 * variance = results.sum_squares[i] - sum_data * sum_data / valid_count # <<<<<<<<<<<<<<
8709 * if valid_count > 1:
8710 * variance /= valid_count - 1
8711 */
8712 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_results, __pyx_n_s_sum_squares); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 248, __pyx_L1_error)
8713 __Pyx_GOTREF(__pyx_t_2);
8714 __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_2, __pyx_v_i, int, 1, __Pyx_PyInt_From_int, 0, 1, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 248, __pyx_L1_error)
8715 __Pyx_GOTREF(__pyx_t_1);
8716 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
8717 __pyx_t_2 = PyNumber_Multiply(__pyx_v_sum_data, __pyx_v_sum_data); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 248, __pyx_L1_error)
8718 __Pyx_GOTREF(__pyx_t_2);
8719 __pyx_t_6 = __Pyx_PyNumber_Divide(__pyx_t_2, __pyx_v_valid_count); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 248, __pyx_L1_error)
8720 __Pyx_GOTREF(__pyx_t_6);
8721 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
8722 __pyx_t_2 = PyNumber_Subtract(__pyx_t_1, __pyx_t_6); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 248, __pyx_L1_error)
8723 __Pyx_GOTREF(__pyx_t_2);
8724 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8725 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
8726 __Pyx_XDECREF_SET(__pyx_v_variance, __pyx_t_2);
8727 __pyx_t_2 = 0;
8728
8729 /* "bx/bbi/bbi_file.pyx":249
8730 * # print results.sum_squares[i], sum_data, valid_count
8731 * variance = results.sum_squares[i] - sum_data * sum_data / valid_count
8732 * if valid_count > 1: # <<<<<<<<<<<<<<
8733 * variance /= valid_count - 1
8734 * std_dev = math.sqrt(max(variance, 0))
8735 */
8736 __pyx_t_2 = PyObject_RichCompare(__pyx_v_valid_count, __pyx_int_1, Py_GT); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 249, __pyx_L1_error)
8737 __pyx_t_11 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_11 < 0)) __PYX_ERR(0, 249, __pyx_L1_error)
8738 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
8739 if (__pyx_t_11) {
8740
8741 /* "bx/bbi/bbi_file.pyx":250
8742 * variance = results.sum_squares[i] - sum_data * sum_data / valid_count
8743 * if valid_count > 1:
8744 * variance /= valid_count - 1 # <<<<<<<<<<<<<<
8745 * std_dev = math.sqrt(max(variance, 0))
8746 *
8747 */
8748 __pyx_t_2 = __Pyx_PyInt_SubtractObjC(__pyx_v_valid_count, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 250, __pyx_L1_error)
8749 __Pyx_GOTREF(__pyx_t_2);
8750 __pyx_t_6 = __Pyx_PyNumber_InPlaceDivide(__pyx_v_variance, __pyx_t_2); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 250, __pyx_L1_error)
8751 __Pyx_GOTREF(__pyx_t_6);
8752 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
8753 __Pyx_DECREF_SET(__pyx_v_variance, __pyx_t_6);
8754 __pyx_t_6 = 0;
8755
8756 /* "bx/bbi/bbi_file.pyx":249
8757 * # print results.sum_squares[i], sum_data, valid_count
8758 * variance = results.sum_squares[i] - sum_data * sum_data / valid_count
8759 * if valid_count > 1: # <<<<<<<<<<<<<<
8760 * variance /= valid_count - 1
8761 * std_dev = math.sqrt(max(variance, 0))
8762 */
8763 }
8764
8765 /* "bx/bbi/bbi_file.pyx":251
8766 * if valid_count > 1:
8767 * variance /= valid_count - 1
8768 * std_dev = math.sqrt(max(variance, 0)) # <<<<<<<<<<<<<<
8769 *
8770 * rval.append( { "mean": mean, "max": results.max_val[i], "min": results.min_val[i], \
8771 */
8772 __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_math); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 251, __pyx_L1_error)
8773 __Pyx_GOTREF(__pyx_t_2);
8774 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_sqrt); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 251, __pyx_L1_error)
8775 __Pyx_GOTREF(__pyx_t_1);
8776 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
8777 __pyx_t_15 = 0;
8778 __Pyx_INCREF(__pyx_v_variance);
8779 __pyx_t_2 = __pyx_v_variance;
8780 __pyx_t_5 = __Pyx_PyInt_From_long(__pyx_t_15); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 251, __pyx_L1_error)
8781 __Pyx_GOTREF(__pyx_t_5);
8782 __pyx_t_4 = PyObject_RichCompare(__pyx_t_5, __pyx_t_2, Py_GT); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 251, __pyx_L1_error)
8783 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
8784 __pyx_t_11 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_11 < 0)) __PYX_ERR(0, 251, __pyx_L1_error)
8785 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
8786 if (__pyx_t_11) {
8787 __pyx_t_4 = __Pyx_PyInt_From_long(__pyx_t_15); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 251, __pyx_L1_error)
8788 __Pyx_GOTREF(__pyx_t_4);
8789 __pyx_t_9 = __pyx_t_4;
8790 __pyx_t_4 = 0;
8791 } else {
8792 __Pyx_INCREF(__pyx_t_2);
8793 __pyx_t_9 = __pyx_t_2;
8794 }
8795 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
8796 __pyx_t_2 = NULL;
8797 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_1))) {
8798 __pyx_t_2 = PyMethod_GET_SELF(__pyx_t_1);
8799 if (likely(__pyx_t_2)) {
8800 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
8801 __Pyx_INCREF(__pyx_t_2);
8802 __Pyx_INCREF(function);
8803 __Pyx_DECREF_SET(__pyx_t_1, function);
8804 }
8805 }
8806 __pyx_t_6 = (__pyx_t_2) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_2, __pyx_t_9) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_t_9);
8807 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
8808 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
8809 if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 251, __pyx_L1_error)
8810 __Pyx_GOTREF(__pyx_t_6);
8811 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8812 __Pyx_XDECREF_SET(__pyx_v_std_dev, __pyx_t_6);
8813 __pyx_t_6 = 0;
8814
8815 /* "bx/bbi/bbi_file.pyx":253
8816 * std_dev = math.sqrt(max(variance, 0))
8817 *
8818 * rval.append( { "mean": mean, "max": results.max_val[i], "min": results.min_val[i], \ # <<<<<<<<<<<<<<
8819 * "coverage": coverage, "std_dev": std_dev } )
8820 *
8821 */
8822 __pyx_t_6 = __Pyx_PyDict_NewPresized(5); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 253, __pyx_L1_error)
8823 __Pyx_GOTREF(__pyx_t_6);
8824 if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_mean, __pyx_v_mean) < 0) __PYX_ERR(0, 253, __pyx_L1_error)
8825 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_results, __pyx_n_s_max_val); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 253, __pyx_L1_error)
8826 __Pyx_GOTREF(__pyx_t_1);
8827 __pyx_t_9 = __Pyx_GetItemInt(__pyx_t_1, __pyx_v_i, int, 1, __Pyx_PyInt_From_int, 0, 1, 1); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 253, __pyx_L1_error)
8828 __Pyx_GOTREF(__pyx_t_9);
8829 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8830 if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_max, __pyx_t_9) < 0) __PYX_ERR(0, 253, __pyx_L1_error)
8831 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
8832 __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_results, __pyx_n_s_min_val); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 253, __pyx_L1_error)
8833 __Pyx_GOTREF(__pyx_t_9);
8834 __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_9, __pyx_v_i, int, 1, __Pyx_PyInt_From_int, 0, 1, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 253, __pyx_L1_error)
8835 __Pyx_GOTREF(__pyx_t_1);
8836 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
8837 if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_min, __pyx_t_1) < 0) __PYX_ERR(0, 253, __pyx_L1_error)
8838 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
8839
8840 /* "bx/bbi/bbi_file.pyx":254
8841 *
8842 * rval.append( { "mean": mean, "max": results.max_val[i], "min": results.min_val[i], \
8843 * "coverage": coverage, "std_dev": std_dev } ) # <<<<<<<<<<<<<<
8844 *
8845 * return rval
8846 */
8847 if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_coverage, __pyx_v_coverage) < 0) __PYX_ERR(0, 253, __pyx_L1_error)
8848 if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_std_dev, __pyx_v_std_dev) < 0) __PYX_ERR(0, 253, __pyx_L1_error)
8849
8850 /* "bx/bbi/bbi_file.pyx":253
8851 * std_dev = math.sqrt(max(variance, 0))
8852 *
8853 * rval.append( { "mean": mean, "max": results.max_val[i], "min": results.min_val[i], \ # <<<<<<<<<<<<<<
8854 * "coverage": coverage, "std_dev": std_dev } )
8855 *
8856 */
8857 __pyx_t_16 = __Pyx_PyList_Append(__pyx_v_rval, __pyx_t_6); if (unlikely(__pyx_t_16 == ((int)-1))) __PYX_ERR(0, 253, __pyx_L1_error)
8858 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
8859 }
8860
8861 /* "bx/bbi/bbi_file.pyx":256
8862 * "coverage": coverage, "std_dev": std_dev } )
8863 *
8864 * return rval # <<<<<<<<<<<<<<
8865 *
8866 * cdef _get_chrom_id_and_size( self, char * chrom ):
8867 */
8868 __Pyx_XDECREF(__pyx_r);
8869 __Pyx_INCREF(__pyx_v_rval);
8870 __pyx_r = __pyx_v_rval;
8871 goto __pyx_L0;
8872
8873 /* "bx/bbi/bbi_file.pyx":227
8874 * return self._summarize_from_full( chrom_id, start, end, summary_size )
8875 *
8876 * cpdef query( self, object chrom, bits32 start, bits32 end, int summary_size ): # <<<<<<<<<<<<<<
8877 * """
8878 * Provides a different view of summary for region, a list of dictionaries
8879 */
8880
8881 /* function exit code */
8882 __pyx_L1_error:;
8883 __Pyx_XDECREF(__pyx_t_1);
8884 __Pyx_XDECREF(__pyx_t_2);
8885 __Pyx_XDECREF(__pyx_t_3);
8886 __Pyx_XDECREF(__pyx_t_4);
8887 __Pyx_XDECREF(__pyx_t_5);
8888 __Pyx_XDECREF(__pyx_t_6);
8889 __Pyx_XDECREF(__pyx_t_7);
8890 __Pyx_XDECREF(__pyx_t_9);
8891 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.query", __pyx_clineno, __pyx_lineno, __pyx_filename);
8892 __pyx_r = 0;
8893 __pyx_L0:;
8894 __Pyx_XDECREF(__pyx_v_results);
8895 __Pyx_XDECREF(__pyx_v_rval);
8896 __Pyx_XDECREF(__pyx_v_sum_data);
8897 __Pyx_XDECREF(__pyx_v_valid_count);
8898 __Pyx_XDECREF(__pyx_v_mean);
8899 __Pyx_XDECREF(__pyx_v_coverage);
8900 __Pyx_XDECREF(__pyx_v_variance);
8901 __Pyx_XDECREF(__pyx_v_std_dev);
8902 __Pyx_XGIVEREF(__pyx_r);
8903 __Pyx_RefNannyFinishContext();
8904 return __pyx_r;
8905 }
8906
8907 /* Python wrapper */
8908 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_9query(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
8909 static char __pyx_doc_2bx_3bbi_8bbi_file_7BBIFile_8query[] = "\n Provides a different view of summary for region, a list of dictionaries\n with keys: mean, max, min, coverage, std_dev\n ";
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_9query(PyObject * __pyx_v_self,PyObject * __pyx_args,PyObject * __pyx_kwds)8910 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_9query(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
8911 PyObject *__pyx_v_chrom = 0;
8912 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start;
8913 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end;
8914 int __pyx_v_summary_size;
8915 int __pyx_lineno = 0;
8916 const char *__pyx_filename = NULL;
8917 int __pyx_clineno = 0;
8918 PyObject *__pyx_r = 0;
8919 __Pyx_RefNannyDeclarations
8920 __Pyx_RefNannySetupContext("query (wrapper)", 0);
8921 {
8922 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_chrom,&__pyx_n_s_start,&__pyx_n_s_end,&__pyx_n_s_summary_size,0};
8923 PyObject* values[4] = {0,0,0,0};
8924 if (unlikely(__pyx_kwds)) {
8925 Py_ssize_t kw_args;
8926 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
8927 switch (pos_args) {
8928 case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
8929 CYTHON_FALLTHROUGH;
8930 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
8931 CYTHON_FALLTHROUGH;
8932 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
8933 CYTHON_FALLTHROUGH;
8934 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
8935 CYTHON_FALLTHROUGH;
8936 case 0: break;
8937 default: goto __pyx_L5_argtuple_error;
8938 }
8939 kw_args = PyDict_Size(__pyx_kwds);
8940 switch (pos_args) {
8941 case 0:
8942 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_chrom)) != 0)) kw_args--;
8943 else goto __pyx_L5_argtuple_error;
8944 CYTHON_FALLTHROUGH;
8945 case 1:
8946 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_start)) != 0)) kw_args--;
8947 else {
8948 __Pyx_RaiseArgtupleInvalid("query", 1, 4, 4, 1); __PYX_ERR(0, 227, __pyx_L3_error)
8949 }
8950 CYTHON_FALLTHROUGH;
8951 case 2:
8952 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_end)) != 0)) kw_args--;
8953 else {
8954 __Pyx_RaiseArgtupleInvalid("query", 1, 4, 4, 2); __PYX_ERR(0, 227, __pyx_L3_error)
8955 }
8956 CYTHON_FALLTHROUGH;
8957 case 3:
8958 if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_summary_size)) != 0)) kw_args--;
8959 else {
8960 __Pyx_RaiseArgtupleInvalid("query", 1, 4, 4, 3); __PYX_ERR(0, 227, __pyx_L3_error)
8961 }
8962 }
8963 if (unlikely(kw_args > 0)) {
8964 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "query") < 0)) __PYX_ERR(0, 227, __pyx_L3_error)
8965 }
8966 } else if (PyTuple_GET_SIZE(__pyx_args) != 4) {
8967 goto __pyx_L5_argtuple_error;
8968 } else {
8969 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
8970 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
8971 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
8972 values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
8973 }
8974 __pyx_v_chrom = values[0];
8975 __pyx_v_start = __Pyx_PyInt_As_unsigned_int(values[1]); if (unlikely((__pyx_v_start == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 227, __pyx_L3_error)
8976 __pyx_v_end = __Pyx_PyInt_As_unsigned_int(values[2]); if (unlikely((__pyx_v_end == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 227, __pyx_L3_error)
8977 __pyx_v_summary_size = __Pyx_PyInt_As_int(values[3]); if (unlikely((__pyx_v_summary_size == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 227, __pyx_L3_error)
8978 }
8979 goto __pyx_L4_argument_unpacking_done;
8980 __pyx_L5_argtuple_error:;
8981 __Pyx_RaiseArgtupleInvalid("query", 1, 4, 4, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 227, __pyx_L3_error)
8982 __pyx_L3_error:;
8983 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.query", __pyx_clineno, __pyx_lineno, __pyx_filename);
8984 __Pyx_RefNannyFinishContext();
8985 return NULL;
8986 __pyx_L4_argument_unpacking_done:;
8987 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_8query(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), __pyx_v_chrom, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size);
8988
8989 /* function exit code */
8990 __Pyx_RefNannyFinishContext();
8991 return __pyx_r;
8992 }
8993
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_8query(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_chrom,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,int __pyx_v_summary_size)8994 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_8query(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_chrom, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size) {
8995 PyObject *__pyx_r = NULL;
8996 __Pyx_RefNannyDeclarations
8997 PyObject *__pyx_t_1 = NULL;
8998 int __pyx_lineno = 0;
8999 const char *__pyx_filename = NULL;
9000 int __pyx_clineno = 0;
9001 __Pyx_RefNannySetupContext("query", 0);
9002 __Pyx_XDECREF(__pyx_r);
9003 __pyx_t_1 = __pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query(__pyx_v_self, __pyx_v_chrom, __pyx_v_start, __pyx_v_end, __pyx_v_summary_size, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 227, __pyx_L1_error)
9004 __Pyx_GOTREF(__pyx_t_1);
9005 __pyx_r = __pyx_t_1;
9006 __pyx_t_1 = 0;
9007 goto __pyx_L0;
9008
9009 /* function exit code */
9010 __pyx_L1_error:;
9011 __Pyx_XDECREF(__pyx_t_1);
9012 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.query", __pyx_clineno, __pyx_lineno, __pyx_filename);
9013 __pyx_r = NULL;
9014 __pyx_L0:;
9015 __Pyx_XGIVEREF(__pyx_r);
9016 __Pyx_RefNannyFinishContext();
9017 return __pyx_r;
9018 }
9019
9020 /* "bx/bbi/bbi_file.pyx":258
9021 * return rval
9022 *
9023 * cdef _get_chrom_id_and_size( self, char * chrom ): # <<<<<<<<<<<<<<
9024 * """
9025 * Lookup id and size from the chromosome named `chrom`
9026 */
9027
__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__get_chrom_id_and_size(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,char * __pyx_v_chrom)9028 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__get_chrom_id_and_size(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, char *__pyx_v_chrom) {
9029 PyObject *__pyx_v_bytes = NULL;
9030 PyObject *__pyx_v_chrom_id = NULL;
9031 PyObject *__pyx_v_chrom_size = NULL;
9032 PyObject *__pyx_r = NULL;
9033 __Pyx_RefNannyDeclarations
9034 PyObject *__pyx_t_1 = NULL;
9035 PyObject *__pyx_t_2 = NULL;
9036 PyObject *__pyx_t_3 = NULL;
9037 PyObject *__pyx_t_4 = NULL;
9038 int __pyx_t_5;
9039 int __pyx_t_6;
9040 Py_ssize_t __pyx_t_7;
9041 int __pyx_t_8;
9042 PyObject *(*__pyx_t_9)(PyObject *);
9043 int __pyx_lineno = 0;
9044 const char *__pyx_filename = NULL;
9045 int __pyx_clineno = 0;
9046 __Pyx_RefNannySetupContext("_get_chrom_id_and_size", 0);
9047
9048 /* "bx/bbi/bbi_file.pyx":262
9049 * Lookup id and size from the chromosome named `chrom`
9050 * """
9051 * bytes = self.chrom_bpt.find( chrom ) # <<<<<<<<<<<<<<
9052 * if bytes is not None:
9053 * # The value is two 32 bit uints, use the BPT's reader for checking byteswapping
9054 */
9055 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self->chrom_bpt), __pyx_n_s_find); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 262, __pyx_L1_error)
9056 __Pyx_GOTREF(__pyx_t_2);
9057 __pyx_t_3 = __Pyx_PyBytes_FromString(__pyx_v_chrom); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 262, __pyx_L1_error)
9058 __Pyx_GOTREF(__pyx_t_3);
9059 __pyx_t_4 = NULL;
9060 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
9061 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_2);
9062 if (likely(__pyx_t_4)) {
9063 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
9064 __Pyx_INCREF(__pyx_t_4);
9065 __Pyx_INCREF(function);
9066 __Pyx_DECREF_SET(__pyx_t_2, function);
9067 }
9068 }
9069 __pyx_t_1 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_4, __pyx_t_3) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_3);
9070 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
9071 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
9072 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 262, __pyx_L1_error)
9073 __Pyx_GOTREF(__pyx_t_1);
9074 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
9075 __pyx_v_bytes = __pyx_t_1;
9076 __pyx_t_1 = 0;
9077
9078 /* "bx/bbi/bbi_file.pyx":263
9079 * """
9080 * bytes = self.chrom_bpt.find( chrom )
9081 * if bytes is not None: # <<<<<<<<<<<<<<
9082 * # The value is two 32 bit uints, use the BPT's reader for checking byteswapping
9083 * assert len( bytes ) == 8
9084 */
9085 __pyx_t_5 = (__pyx_v_bytes != Py_None);
9086 __pyx_t_6 = (__pyx_t_5 != 0);
9087 if (__pyx_t_6) {
9088
9089 /* "bx/bbi/bbi_file.pyx":265
9090 * if bytes is not None:
9091 * # The value is two 32 bit uints, use the BPT's reader for checking byteswapping
9092 * assert len( bytes ) == 8 # <<<<<<<<<<<<<<
9093 * chrom_id, chrom_size = self.chrom_bpt.reader.unpack( "II", bytes )
9094 * return chrom_id, chrom_size
9095 */
9096 #ifndef CYTHON_WITHOUT_ASSERTIONS
9097 if (unlikely(!Py_OptimizeFlag)) {
9098 __pyx_t_7 = PyObject_Length(__pyx_v_bytes); if (unlikely(__pyx_t_7 == ((Py_ssize_t)-1))) __PYX_ERR(0, 265, __pyx_L1_error)
9099 if (unlikely(!((__pyx_t_7 == 8) != 0))) {
9100 PyErr_SetNone(PyExc_AssertionError);
9101 __PYX_ERR(0, 265, __pyx_L1_error)
9102 }
9103 }
9104 #endif
9105
9106 /* "bx/bbi/bbi_file.pyx":266
9107 * # The value is two 32 bit uints, use the BPT's reader for checking byteswapping
9108 * assert len( bytes ) == 8
9109 * chrom_id, chrom_size = self.chrom_bpt.reader.unpack( "II", bytes ) # <<<<<<<<<<<<<<
9110 * return chrom_id, chrom_size
9111 * else:
9112 */
9113 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self->chrom_bpt->reader, __pyx_n_s_unpack); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 266, __pyx_L1_error)
9114 __Pyx_GOTREF(__pyx_t_2);
9115 __pyx_t_3 = NULL;
9116 __pyx_t_8 = 0;
9117 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
9118 __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2);
9119 if (likely(__pyx_t_3)) {
9120 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
9121 __Pyx_INCREF(__pyx_t_3);
9122 __Pyx_INCREF(function);
9123 __Pyx_DECREF_SET(__pyx_t_2, function);
9124 __pyx_t_8 = 1;
9125 }
9126 }
9127 #if CYTHON_FAST_PYCALL
9128 if (PyFunction_Check(__pyx_t_2)) {
9129 PyObject *__pyx_temp[3] = {__pyx_t_3, __pyx_n_s_II, __pyx_v_bytes};
9130 __pyx_t_1 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_8, 2+__pyx_t_8); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 266, __pyx_L1_error)
9131 __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
9132 __Pyx_GOTREF(__pyx_t_1);
9133 } else
9134 #endif
9135 #if CYTHON_FAST_PYCCALL
9136 if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
9137 PyObject *__pyx_temp[3] = {__pyx_t_3, __pyx_n_s_II, __pyx_v_bytes};
9138 __pyx_t_1 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_8, 2+__pyx_t_8); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 266, __pyx_L1_error)
9139 __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
9140 __Pyx_GOTREF(__pyx_t_1);
9141 } else
9142 #endif
9143 {
9144 __pyx_t_4 = PyTuple_New(2+__pyx_t_8); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 266, __pyx_L1_error)
9145 __Pyx_GOTREF(__pyx_t_4);
9146 if (__pyx_t_3) {
9147 __Pyx_GIVEREF(__pyx_t_3); PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_3); __pyx_t_3 = NULL;
9148 }
9149 __Pyx_INCREF(__pyx_n_s_II);
9150 __Pyx_GIVEREF(__pyx_n_s_II);
9151 PyTuple_SET_ITEM(__pyx_t_4, 0+__pyx_t_8, __pyx_n_s_II);
9152 __Pyx_INCREF(__pyx_v_bytes);
9153 __Pyx_GIVEREF(__pyx_v_bytes);
9154 PyTuple_SET_ITEM(__pyx_t_4, 1+__pyx_t_8, __pyx_v_bytes);
9155 __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_4, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 266, __pyx_L1_error)
9156 __Pyx_GOTREF(__pyx_t_1);
9157 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
9158 }
9159 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
9160 if ((likely(PyTuple_CheckExact(__pyx_t_1))) || (PyList_CheckExact(__pyx_t_1))) {
9161 PyObject* sequence = __pyx_t_1;
9162 Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
9163 if (unlikely(size != 2)) {
9164 if (size > 2) __Pyx_RaiseTooManyValuesError(2);
9165 else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
9166 __PYX_ERR(0, 266, __pyx_L1_error)
9167 }
9168 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
9169 if (likely(PyTuple_CheckExact(sequence))) {
9170 __pyx_t_2 = PyTuple_GET_ITEM(sequence, 0);
9171 __pyx_t_4 = PyTuple_GET_ITEM(sequence, 1);
9172 } else {
9173 __pyx_t_2 = PyList_GET_ITEM(sequence, 0);
9174 __pyx_t_4 = PyList_GET_ITEM(sequence, 1);
9175 }
9176 __Pyx_INCREF(__pyx_t_2);
9177 __Pyx_INCREF(__pyx_t_4);
9178 #else
9179 __pyx_t_2 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 266, __pyx_L1_error)
9180 __Pyx_GOTREF(__pyx_t_2);
9181 __pyx_t_4 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 266, __pyx_L1_error)
9182 __Pyx_GOTREF(__pyx_t_4);
9183 #endif
9184 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
9185 } else {
9186 Py_ssize_t index = -1;
9187 __pyx_t_3 = PyObject_GetIter(__pyx_t_1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 266, __pyx_L1_error)
9188 __Pyx_GOTREF(__pyx_t_3);
9189 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
9190 __pyx_t_9 = Py_TYPE(__pyx_t_3)->tp_iternext;
9191 index = 0; __pyx_t_2 = __pyx_t_9(__pyx_t_3); if (unlikely(!__pyx_t_2)) goto __pyx_L4_unpacking_failed;
9192 __Pyx_GOTREF(__pyx_t_2);
9193 index = 1; __pyx_t_4 = __pyx_t_9(__pyx_t_3); if (unlikely(!__pyx_t_4)) goto __pyx_L4_unpacking_failed;
9194 __Pyx_GOTREF(__pyx_t_4);
9195 if (__Pyx_IternextUnpackEndCheck(__pyx_t_9(__pyx_t_3), 2) < 0) __PYX_ERR(0, 266, __pyx_L1_error)
9196 __pyx_t_9 = NULL;
9197 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
9198 goto __pyx_L5_unpacking_done;
9199 __pyx_L4_unpacking_failed:;
9200 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
9201 __pyx_t_9 = NULL;
9202 if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
9203 __PYX_ERR(0, 266, __pyx_L1_error)
9204 __pyx_L5_unpacking_done:;
9205 }
9206 __pyx_v_chrom_id = __pyx_t_2;
9207 __pyx_t_2 = 0;
9208 __pyx_v_chrom_size = __pyx_t_4;
9209 __pyx_t_4 = 0;
9210
9211 /* "bx/bbi/bbi_file.pyx":267
9212 * assert len( bytes ) == 8
9213 * chrom_id, chrom_size = self.chrom_bpt.reader.unpack( "II", bytes )
9214 * return chrom_id, chrom_size # <<<<<<<<<<<<<<
9215 * else:
9216 * return None, None
9217 */
9218 __Pyx_XDECREF(__pyx_r);
9219 __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 267, __pyx_L1_error)
9220 __Pyx_GOTREF(__pyx_t_1);
9221 __Pyx_INCREF(__pyx_v_chrom_id);
9222 __Pyx_GIVEREF(__pyx_v_chrom_id);
9223 PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_v_chrom_id);
9224 __Pyx_INCREF(__pyx_v_chrom_size);
9225 __Pyx_GIVEREF(__pyx_v_chrom_size);
9226 PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_v_chrom_size);
9227 __pyx_r = __pyx_t_1;
9228 __pyx_t_1 = 0;
9229 goto __pyx_L0;
9230
9231 /* "bx/bbi/bbi_file.pyx":263
9232 * """
9233 * bytes = self.chrom_bpt.find( chrom )
9234 * if bytes is not None: # <<<<<<<<<<<<<<
9235 * # The value is two 32 bit uints, use the BPT's reader for checking byteswapping
9236 * assert len( bytes ) == 8
9237 */
9238 }
9239
9240 /* "bx/bbi/bbi_file.pyx":269
9241 * return chrom_id, chrom_size
9242 * else:
9243 * return None, None # <<<<<<<<<<<<<<
9244 *
9245 * cdef _summarize_from_full( self, bits32 chrom_id, bits32 start, bits32 end, int summary_size ):
9246 */
9247 /*else*/ {
9248 __Pyx_XDECREF(__pyx_r);
9249 __Pyx_INCREF(__pyx_tuple_);
9250 __pyx_r = __pyx_tuple_;
9251 goto __pyx_L0;
9252 }
9253
9254 /* "bx/bbi/bbi_file.pyx":258
9255 * return rval
9256 *
9257 * cdef _get_chrom_id_and_size( self, char * chrom ): # <<<<<<<<<<<<<<
9258 * """
9259 * Lookup id and size from the chromosome named `chrom`
9260 */
9261
9262 /* function exit code */
9263 __pyx_L1_error:;
9264 __Pyx_XDECREF(__pyx_t_1);
9265 __Pyx_XDECREF(__pyx_t_2);
9266 __Pyx_XDECREF(__pyx_t_3);
9267 __Pyx_XDECREF(__pyx_t_4);
9268 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile._get_chrom_id_and_size", __pyx_clineno, __pyx_lineno, __pyx_filename);
9269 __pyx_r = 0;
9270 __pyx_L0:;
9271 __Pyx_XDECREF(__pyx_v_bytes);
9272 __Pyx_XDECREF(__pyx_v_chrom_id);
9273 __Pyx_XDECREF(__pyx_v_chrom_size);
9274 __Pyx_XGIVEREF(__pyx_r);
9275 __Pyx_RefNannyFinishContext();
9276 return __pyx_r;
9277 }
9278
9279 /* "bx/bbi/bbi_file.pyx":271
9280 * return None, None
9281 *
9282 * cdef _summarize_from_full( self, bits32 chrom_id, bits32 start, bits32 end, int summary_size ): # <<<<<<<<<<<<<<
9283 * """
9284 * Create summary from full data. This is data specific so must be overridden.
9285 */
9286
__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__summarize_from_full(CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,CYTHON_UNUSED __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id,CYTHON_UNUSED __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,CYTHON_UNUSED __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,CYTHON_UNUSED int __pyx_v_summary_size)9287 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__summarize_from_full(CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, CYTHON_UNUSED __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id, CYTHON_UNUSED __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, CYTHON_UNUSED __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, CYTHON_UNUSED int __pyx_v_summary_size) {
9288 PyObject *__pyx_r = NULL;
9289 __Pyx_RefNannyDeclarations
9290 __Pyx_RefNannySetupContext("_summarize_from_full", 0);
9291
9292 /* function exit code */
9293 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
9294 __Pyx_XGIVEREF(__pyx_r);
9295 __Pyx_RefNannyFinishContext();
9296 return __pyx_r;
9297 }
9298
9299 /* "bx/bbi/bbi_file.pyx":277
9300 * pass
9301 *
9302 * cdef _best_zoom_level( self, int desired_reduction ): # <<<<<<<<<<<<<<
9303 * if desired_reduction <= 1:
9304 * return None
9305 */
9306
__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__best_zoom_level(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,int __pyx_v_desired_reduction)9307 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__best_zoom_level(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, int __pyx_v_desired_reduction) {
9308 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_level = 0;
9309 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_closest_level = 0;
9310 int __pyx_v_diff;
9311 int __pyx_v_closest_diff;
9312 PyObject *__pyx_r = NULL;
9313 __Pyx_RefNannyDeclarations
9314 int __pyx_t_1;
9315 PyObject *__pyx_t_2 = NULL;
9316 Py_ssize_t __pyx_t_3;
9317 PyObject *(*__pyx_t_4)(PyObject *);
9318 PyObject *__pyx_t_5 = NULL;
9319 int __pyx_t_6;
9320 int __pyx_lineno = 0;
9321 const char *__pyx_filename = NULL;
9322 int __pyx_clineno = 0;
9323 __Pyx_RefNannySetupContext("_best_zoom_level", 0);
9324
9325 /* "bx/bbi/bbi_file.pyx":278
9326 *
9327 * cdef _best_zoom_level( self, int desired_reduction ):
9328 * if desired_reduction <= 1: # <<<<<<<<<<<<<<
9329 * return None
9330 *
9331 */
9332 __pyx_t_1 = ((__pyx_v_desired_reduction <= 1) != 0);
9333 if (__pyx_t_1) {
9334
9335 /* "bx/bbi/bbi_file.pyx":279
9336 * cdef _best_zoom_level( self, int desired_reduction ):
9337 * if desired_reduction <= 1:
9338 * return None # <<<<<<<<<<<<<<
9339 *
9340 * cdef ZoomLevel level, closest_level
9341 */
9342 __Pyx_XDECREF(__pyx_r);
9343 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
9344 goto __pyx_L0;
9345
9346 /* "bx/bbi/bbi_file.pyx":278
9347 *
9348 * cdef _best_zoom_level( self, int desired_reduction ):
9349 * if desired_reduction <= 1: # <<<<<<<<<<<<<<
9350 * return None
9351 *
9352 */
9353 }
9354
9355 /* "bx/bbi/bbi_file.pyx":282
9356 *
9357 * cdef ZoomLevel level, closest_level
9358 * cdef int diff, closest_diff = limits.INT_MAX # <<<<<<<<<<<<<<
9359 *
9360 * closest_level = None
9361 */
9362 __pyx_v_closest_diff = INT_MAX;
9363
9364 /* "bx/bbi/bbi_file.pyx":284
9365 * cdef int diff, closest_diff = limits.INT_MAX
9366 *
9367 * closest_level = None # <<<<<<<<<<<<<<
9368 * for level in self.level_list:
9369 * diff = desired_reduction - level.reduction_level
9370 */
9371 __Pyx_INCREF(Py_None);
9372 __pyx_v_closest_level = ((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)Py_None);
9373
9374 /* "bx/bbi/bbi_file.pyx":285
9375 *
9376 * closest_level = None
9377 * for level in self.level_list: # <<<<<<<<<<<<<<
9378 * diff = desired_reduction - level.reduction_level
9379 * if diff >= 0 and diff < closest_diff:
9380 */
9381 if (likely(PyList_CheckExact(__pyx_v_self->level_list)) || PyTuple_CheckExact(__pyx_v_self->level_list)) {
9382 __pyx_t_2 = __pyx_v_self->level_list; __Pyx_INCREF(__pyx_t_2); __pyx_t_3 = 0;
9383 __pyx_t_4 = NULL;
9384 } else {
9385 __pyx_t_3 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_v_self->level_list); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 285, __pyx_L1_error)
9386 __Pyx_GOTREF(__pyx_t_2);
9387 __pyx_t_4 = Py_TYPE(__pyx_t_2)->tp_iternext; if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 285, __pyx_L1_error)
9388 }
9389 for (;;) {
9390 if (likely(!__pyx_t_4)) {
9391 if (likely(PyList_CheckExact(__pyx_t_2))) {
9392 if (__pyx_t_3 >= PyList_GET_SIZE(__pyx_t_2)) break;
9393 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
9394 __pyx_t_5 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(0, 285, __pyx_L1_error)
9395 #else
9396 __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 285, __pyx_L1_error)
9397 __Pyx_GOTREF(__pyx_t_5);
9398 #endif
9399 } else {
9400 if (__pyx_t_3 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
9401 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
9402 __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(0, 285, __pyx_L1_error)
9403 #else
9404 __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 285, __pyx_L1_error)
9405 __Pyx_GOTREF(__pyx_t_5);
9406 #endif
9407 }
9408 } else {
9409 __pyx_t_5 = __pyx_t_4(__pyx_t_2);
9410 if (unlikely(!__pyx_t_5)) {
9411 PyObject* exc_type = PyErr_Occurred();
9412 if (exc_type) {
9413 if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
9414 else __PYX_ERR(0, 285, __pyx_L1_error)
9415 }
9416 break;
9417 }
9418 __Pyx_GOTREF(__pyx_t_5);
9419 }
9420 if (!(likely(((__pyx_t_5) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_5, __pyx_ptype_2bx_3bbi_8bbi_file_ZoomLevel))))) __PYX_ERR(0, 285, __pyx_L1_error)
9421 __Pyx_XDECREF_SET(__pyx_v_level, ((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_t_5));
9422 __pyx_t_5 = 0;
9423
9424 /* "bx/bbi/bbi_file.pyx":286
9425 * closest_level = None
9426 * for level in self.level_list:
9427 * diff = desired_reduction - level.reduction_level # <<<<<<<<<<<<<<
9428 * if diff >= 0 and diff < closest_diff:
9429 * closest_diff = diff
9430 */
9431 __pyx_v_diff = (__pyx_v_desired_reduction - __pyx_v_level->reduction_level);
9432
9433 /* "bx/bbi/bbi_file.pyx":287
9434 * for level in self.level_list:
9435 * diff = desired_reduction - level.reduction_level
9436 * if diff >= 0 and diff < closest_diff: # <<<<<<<<<<<<<<
9437 * closest_diff = diff
9438 * closest_level = level
9439 */
9440 __pyx_t_6 = ((__pyx_v_diff >= 0) != 0);
9441 if (__pyx_t_6) {
9442 } else {
9443 __pyx_t_1 = __pyx_t_6;
9444 goto __pyx_L7_bool_binop_done;
9445 }
9446 __pyx_t_6 = ((__pyx_v_diff < __pyx_v_closest_diff) != 0);
9447 __pyx_t_1 = __pyx_t_6;
9448 __pyx_L7_bool_binop_done:;
9449 if (__pyx_t_1) {
9450
9451 /* "bx/bbi/bbi_file.pyx":288
9452 * diff = desired_reduction - level.reduction_level
9453 * if diff >= 0 and diff < closest_diff:
9454 * closest_diff = diff # <<<<<<<<<<<<<<
9455 * closest_level = level
9456 * return closest_level
9457 */
9458 __pyx_v_closest_diff = __pyx_v_diff;
9459
9460 /* "bx/bbi/bbi_file.pyx":289
9461 * if diff >= 0 and diff < closest_diff:
9462 * closest_diff = diff
9463 * closest_level = level # <<<<<<<<<<<<<<
9464 * return closest_level
9465 *
9466 */
9467 __Pyx_INCREF(((PyObject *)__pyx_v_level));
9468 __Pyx_DECREF_SET(__pyx_v_closest_level, __pyx_v_level);
9469
9470 /* "bx/bbi/bbi_file.pyx":287
9471 * for level in self.level_list:
9472 * diff = desired_reduction - level.reduction_level
9473 * if diff >= 0 and diff < closest_diff: # <<<<<<<<<<<<<<
9474 * closest_diff = diff
9475 * closest_level = level
9476 */
9477 }
9478
9479 /* "bx/bbi/bbi_file.pyx":285
9480 *
9481 * closest_level = None
9482 * for level in self.level_list: # <<<<<<<<<<<<<<
9483 * diff = desired_reduction - level.reduction_level
9484 * if diff >= 0 and diff < closest_diff:
9485 */
9486 }
9487 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
9488
9489 /* "bx/bbi/bbi_file.pyx":290
9490 * closest_diff = diff
9491 * closest_level = level
9492 * return closest_level # <<<<<<<<<<<<<<
9493 *
9494 * cdef class ZoomLevel:
9495 */
9496 __Pyx_XDECREF(__pyx_r);
9497 __Pyx_INCREF(((PyObject *)__pyx_v_closest_level));
9498 __pyx_r = ((PyObject *)__pyx_v_closest_level);
9499 goto __pyx_L0;
9500
9501 /* "bx/bbi/bbi_file.pyx":277
9502 * pass
9503 *
9504 * cdef _best_zoom_level( self, int desired_reduction ): # <<<<<<<<<<<<<<
9505 * if desired_reduction <= 1:
9506 * return None
9507 */
9508
9509 /* function exit code */
9510 __pyx_L1_error:;
9511 __Pyx_XDECREF(__pyx_t_2);
9512 __Pyx_XDECREF(__pyx_t_5);
9513 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile._best_zoom_level", __pyx_clineno, __pyx_lineno, __pyx_filename);
9514 __pyx_r = 0;
9515 __pyx_L0:;
9516 __Pyx_XDECREF((PyObject *)__pyx_v_level);
9517 __Pyx_XDECREF((PyObject *)__pyx_v_closest_level);
9518 __Pyx_XGIVEREF(__pyx_r);
9519 __Pyx_RefNannyFinishContext();
9520 return __pyx_r;
9521 }
9522
9523 /* "bx/bbi/bbi_file.pxd":56
9524 * cdef object reader
9525 * # The magic number or type signature (whether the file is bigWig or bigBed or...)
9526 * cdef public bits32 magic # <<<<<<<<<<<<<<
9527 * # Is the file byteswapped relative to our native byte order?
9528 * cdef boolean is_byteswapped
9529 */
9530
9531 /* Python wrapper */
9532 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5magic_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5magic_1__get__(PyObject * __pyx_v_self)9533 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5magic_1__get__(PyObject *__pyx_v_self) {
9534 PyObject *__pyx_r = 0;
9535 __Pyx_RefNannyDeclarations
9536 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
9537 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_5magic___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self));
9538
9539 /* function exit code */
9540 __Pyx_RefNannyFinishContext();
9541 return __pyx_r;
9542 }
9543
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_5magic___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self)9544 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_5magic___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self) {
9545 PyObject *__pyx_r = NULL;
9546 __Pyx_RefNannyDeclarations
9547 PyObject *__pyx_t_1 = NULL;
9548 int __pyx_lineno = 0;
9549 const char *__pyx_filename = NULL;
9550 int __pyx_clineno = 0;
9551 __Pyx_RefNannySetupContext("__get__", 0);
9552 __Pyx_XDECREF(__pyx_r);
9553 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->magic); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 56, __pyx_L1_error)
9554 __Pyx_GOTREF(__pyx_t_1);
9555 __pyx_r = __pyx_t_1;
9556 __pyx_t_1 = 0;
9557 goto __pyx_L0;
9558
9559 /* function exit code */
9560 __pyx_L1_error:;
9561 __Pyx_XDECREF(__pyx_t_1);
9562 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.magic.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
9563 __pyx_r = NULL;
9564 __pyx_L0:;
9565 __Pyx_XGIVEREF(__pyx_r);
9566 __Pyx_RefNannyFinishContext();
9567 return __pyx_r;
9568 }
9569
9570 /* Python wrapper */
9571 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5magic_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5magic_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)9572 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5magic_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
9573 int __pyx_r;
9574 __Pyx_RefNannyDeclarations
9575 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
9576 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_5magic_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), ((PyObject *)__pyx_v_value));
9577
9578 /* function exit code */
9579 __Pyx_RefNannyFinishContext();
9580 return __pyx_r;
9581 }
9582
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_5magic_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_value)9583 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_5magic_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_value) {
9584 int __pyx_r;
9585 __Pyx_RefNannyDeclarations
9586 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_1;
9587 int __pyx_lineno = 0;
9588 const char *__pyx_filename = NULL;
9589 int __pyx_clineno = 0;
9590 __Pyx_RefNannySetupContext("__set__", 0);
9591 __pyx_t_1 = __Pyx_PyInt_As_unsigned_int(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(1, 56, __pyx_L1_error)
9592 __pyx_v_self->magic = __pyx_t_1;
9593
9594 /* function exit code */
9595 __pyx_r = 0;
9596 goto __pyx_L0;
9597 __pyx_L1_error:;
9598 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.magic.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
9599 __pyx_r = -1;
9600 __pyx_L0:;
9601 __Pyx_RefNannyFinishContext();
9602 return __pyx_r;
9603 }
9604
9605 /* "bx/bbi/bbi_file.pxd":62
9606 * cdef BPTFile chrom_bpt
9607 * # Version number
9608 * cdef public bits16 version # <<<<<<<<<<<<<<
9609 * # Number of zoom levels
9610 * cdef public bits16 zoom_levels
9611 */
9612
9613 /* Python wrapper */
9614 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7version_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7version_1__get__(PyObject * __pyx_v_self)9615 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7version_1__get__(PyObject *__pyx_v_self) {
9616 PyObject *__pyx_r = 0;
9617 __Pyx_RefNannyDeclarations
9618 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
9619 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_7version___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self));
9620
9621 /* function exit code */
9622 __Pyx_RefNannyFinishContext();
9623 return __pyx_r;
9624 }
9625
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_7version___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self)9626 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_7version___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self) {
9627 PyObject *__pyx_r = NULL;
9628 __Pyx_RefNannyDeclarations
9629 PyObject *__pyx_t_1 = NULL;
9630 int __pyx_lineno = 0;
9631 const char *__pyx_filename = NULL;
9632 int __pyx_clineno = 0;
9633 __Pyx_RefNannySetupContext("__get__", 0);
9634 __Pyx_XDECREF(__pyx_r);
9635 __pyx_t_1 = __Pyx_PyInt_From_unsigned_short(__pyx_v_self->version); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 62, __pyx_L1_error)
9636 __Pyx_GOTREF(__pyx_t_1);
9637 __pyx_r = __pyx_t_1;
9638 __pyx_t_1 = 0;
9639 goto __pyx_L0;
9640
9641 /* function exit code */
9642 __pyx_L1_error:;
9643 __Pyx_XDECREF(__pyx_t_1);
9644 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.version.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
9645 __pyx_r = NULL;
9646 __pyx_L0:;
9647 __Pyx_XGIVEREF(__pyx_r);
9648 __Pyx_RefNannyFinishContext();
9649 return __pyx_r;
9650 }
9651
9652 /* Python wrapper */
9653 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7version_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7version_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)9654 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7version_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
9655 int __pyx_r;
9656 __Pyx_RefNannyDeclarations
9657 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
9658 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_7version_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), ((PyObject *)__pyx_v_value));
9659
9660 /* function exit code */
9661 __Pyx_RefNannyFinishContext();
9662 return __pyx_r;
9663 }
9664
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_7version_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_value)9665 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_7version_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_value) {
9666 int __pyx_r;
9667 __Pyx_RefNannyDeclarations
9668 __pyx_t_2bx_3bbi_5types_bits16 __pyx_t_1;
9669 int __pyx_lineno = 0;
9670 const char *__pyx_filename = NULL;
9671 int __pyx_clineno = 0;
9672 __Pyx_RefNannySetupContext("__set__", 0);
9673 __pyx_t_1 = __Pyx_PyInt_As_unsigned_short(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(1, 62, __pyx_L1_error)
9674 __pyx_v_self->version = __pyx_t_1;
9675
9676 /* function exit code */
9677 __pyx_r = 0;
9678 goto __pyx_L0;
9679 __pyx_L1_error:;
9680 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.version.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
9681 __pyx_r = -1;
9682 __pyx_L0:;
9683 __Pyx_RefNannyFinishContext();
9684 return __pyx_r;
9685 }
9686
9687 /* "bx/bbi/bbi_file.pxd":64
9688 * cdef public bits16 version
9689 * # Number of zoom levels
9690 * cdef public bits16 zoom_levels # <<<<<<<<<<<<<<
9691 * # Offset to chromosome index
9692 * cdef bits64 chrom_tree_offset
9693 */
9694
9695 /* Python wrapper */
9696 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_1__get__(PyObject * __pyx_v_self)9697 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_1__get__(PyObject *__pyx_v_self) {
9698 PyObject *__pyx_r = 0;
9699 __Pyx_RefNannyDeclarations
9700 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
9701 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self));
9702
9703 /* function exit code */
9704 __Pyx_RefNannyFinishContext();
9705 return __pyx_r;
9706 }
9707
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self)9708 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self) {
9709 PyObject *__pyx_r = NULL;
9710 __Pyx_RefNannyDeclarations
9711 PyObject *__pyx_t_1 = NULL;
9712 int __pyx_lineno = 0;
9713 const char *__pyx_filename = NULL;
9714 int __pyx_clineno = 0;
9715 __Pyx_RefNannySetupContext("__get__", 0);
9716 __Pyx_XDECREF(__pyx_r);
9717 __pyx_t_1 = __Pyx_PyInt_From_unsigned_short(__pyx_v_self->zoom_levels); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 64, __pyx_L1_error)
9718 __Pyx_GOTREF(__pyx_t_1);
9719 __pyx_r = __pyx_t_1;
9720 __pyx_t_1 = 0;
9721 goto __pyx_L0;
9722
9723 /* function exit code */
9724 __pyx_L1_error:;
9725 __Pyx_XDECREF(__pyx_t_1);
9726 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.zoom_levels.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
9727 __pyx_r = NULL;
9728 __pyx_L0:;
9729 __Pyx_XGIVEREF(__pyx_r);
9730 __Pyx_RefNannyFinishContext();
9731 return __pyx_r;
9732 }
9733
9734 /* Python wrapper */
9735 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)9736 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
9737 int __pyx_r;
9738 __Pyx_RefNannyDeclarations
9739 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
9740 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), ((PyObject *)__pyx_v_value));
9741
9742 /* function exit code */
9743 __Pyx_RefNannyFinishContext();
9744 return __pyx_r;
9745 }
9746
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_value)9747 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_value) {
9748 int __pyx_r;
9749 __Pyx_RefNannyDeclarations
9750 __pyx_t_2bx_3bbi_5types_bits16 __pyx_t_1;
9751 int __pyx_lineno = 0;
9752 const char *__pyx_filename = NULL;
9753 int __pyx_clineno = 0;
9754 __Pyx_RefNannySetupContext("__set__", 0);
9755 __pyx_t_1 = __Pyx_PyInt_As_unsigned_short(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(1, 64, __pyx_L1_error)
9756 __pyx_v_self->zoom_levels = __pyx_t_1;
9757
9758 /* function exit code */
9759 __pyx_r = 0;
9760 goto __pyx_L0;
9761 __pyx_L1_error:;
9762 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.zoom_levels.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
9763 __pyx_r = -1;
9764 __pyx_L0:;
9765 __Pyx_RefNannyFinishContext();
9766 return __pyx_r;
9767 }
9768
9769 /* "bx/bbi/bbi_file.pxd":81
9770 * cdef bits32 uncompress_buf_size
9771 * # Zoom levels list
9772 * cdef public object level_list # <<<<<<<<<<<<<<
9773 *
9774 * cdef visit_blocks_in_region( self, bits32 chrom_id, bits32 start, bits32 end, BlockHandler handler )
9775 */
9776
9777 /* Python wrapper */
9778 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_1__get__(PyObject * __pyx_v_self)9779 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_1__get__(PyObject *__pyx_v_self) {
9780 PyObject *__pyx_r = 0;
9781 __Pyx_RefNannyDeclarations
9782 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
9783 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self));
9784
9785 /* function exit code */
9786 __Pyx_RefNannyFinishContext();
9787 return __pyx_r;
9788 }
9789
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self)9790 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self) {
9791 PyObject *__pyx_r = NULL;
9792 __Pyx_RefNannyDeclarations
9793 __Pyx_RefNannySetupContext("__get__", 0);
9794 __Pyx_XDECREF(__pyx_r);
9795 __Pyx_INCREF(__pyx_v_self->level_list);
9796 __pyx_r = __pyx_v_self->level_list;
9797 goto __pyx_L0;
9798
9799 /* function exit code */
9800 __pyx_L0:;
9801 __Pyx_XGIVEREF(__pyx_r);
9802 __Pyx_RefNannyFinishContext();
9803 return __pyx_r;
9804 }
9805
9806 /* Python wrapper */
9807 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)9808 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
9809 int __pyx_r;
9810 __Pyx_RefNannyDeclarations
9811 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
9812 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), ((PyObject *)__pyx_v_value));
9813
9814 /* function exit code */
9815 __Pyx_RefNannyFinishContext();
9816 return __pyx_r;
9817 }
9818
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v_value)9819 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v_value) {
9820 int __pyx_r;
9821 __Pyx_RefNannyDeclarations
9822 __Pyx_RefNannySetupContext("__set__", 0);
9823 __Pyx_INCREF(__pyx_v_value);
9824 __Pyx_GIVEREF(__pyx_v_value);
9825 __Pyx_GOTREF(__pyx_v_self->level_list);
9826 __Pyx_DECREF(__pyx_v_self->level_list);
9827 __pyx_v_self->level_list = __pyx_v_value;
9828
9829 /* function exit code */
9830 __pyx_r = 0;
9831 __Pyx_RefNannyFinishContext();
9832 return __pyx_r;
9833 }
9834
9835 /* Python wrapper */
9836 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_5__del__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_5__del__(PyObject * __pyx_v_self)9837 static int __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_5__del__(PyObject *__pyx_v_self) {
9838 int __pyx_r;
9839 __Pyx_RefNannyDeclarations
9840 __Pyx_RefNannySetupContext("__del__ (wrapper)", 0);
9841 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list_4__del__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self));
9842
9843 /* function exit code */
9844 __Pyx_RefNannyFinishContext();
9845 return __pyx_r;
9846 }
9847
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self)9848 static int __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10level_list_4__del__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self) {
9849 int __pyx_r;
9850 __Pyx_RefNannyDeclarations
9851 __Pyx_RefNannySetupContext("__del__", 0);
9852 __Pyx_INCREF(Py_None);
9853 __Pyx_GIVEREF(Py_None);
9854 __Pyx_GOTREF(__pyx_v_self->level_list);
9855 __Pyx_DECREF(__pyx_v_self->level_list);
9856 __pyx_v_self->level_list = Py_None;
9857
9858 /* function exit code */
9859 __pyx_r = 0;
9860 __Pyx_RefNannyFinishContext();
9861 return __pyx_r;
9862 }
9863
9864 /* "(tree fragment)":1
9865 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
9866 * cdef tuple state
9867 * cdef object _dict
9868 */
9869
9870 /* Python wrapper */
9871 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11__reduce_cython__(PyObject * __pyx_v_self,CYTHON_UNUSED PyObject * unused)9872 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
9873 PyObject *__pyx_r = 0;
9874 __Pyx_RefNannyDeclarations
9875 __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
9876 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10__reduce_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self));
9877
9878 /* function exit code */
9879 __Pyx_RefNannyFinishContext();
9880 return __pyx_r;
9881 }
9882
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10__reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self)9883 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_10__reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self) {
9884 PyObject *__pyx_v_state = 0;
9885 PyObject *__pyx_v__dict = 0;
9886 int __pyx_v_use_setstate;
9887 PyObject *__pyx_r = NULL;
9888 __Pyx_RefNannyDeclarations
9889 PyObject *__pyx_t_1 = NULL;
9890 PyObject *__pyx_t_2 = NULL;
9891 PyObject *__pyx_t_3 = NULL;
9892 PyObject *__pyx_t_4 = NULL;
9893 PyObject *__pyx_t_5 = NULL;
9894 PyObject *__pyx_t_6 = NULL;
9895 PyObject *__pyx_t_7 = NULL;
9896 PyObject *__pyx_t_8 = NULL;
9897 PyObject *__pyx_t_9 = NULL;
9898 PyObject *__pyx_t_10 = NULL;
9899 PyObject *__pyx_t_11 = NULL;
9900 PyObject *__pyx_t_12 = NULL;
9901 PyObject *__pyx_t_13 = NULL;
9902 int __pyx_t_14;
9903 int __pyx_t_15;
9904 int __pyx_t_16;
9905 int __pyx_lineno = 0;
9906 const char *__pyx_filename = NULL;
9907 int __pyx_clineno = 0;
9908 __Pyx_RefNannySetupContext("__reduce_cython__", 0);
9909
9910 /* "(tree fragment)":5
9911 * cdef object _dict
9912 * cdef bint use_setstate
9913 * state = (self.as_offset, self.chrom_bpt, self.chrom_tree_offset, self.defined_field_count, self.field_count, self.file, self.is_byteswapped, self.level_list, self.magic, self.reader, self.total_summary_offset, self.uncompress_buf_size, self.unzoomed_data_offset, self.unzoomed_index_offset, self.version, self.zoom_levels) # <<<<<<<<<<<<<<
9914 * _dict = getattr(self, '__dict__', None)
9915 * if _dict is not None:
9916 */
9917 __pyx_t_1 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->as_offset); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 5, __pyx_L1_error)
9918 __Pyx_GOTREF(__pyx_t_1);
9919 __pyx_t_2 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->chrom_tree_offset); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
9920 __Pyx_GOTREF(__pyx_t_2);
9921 __pyx_t_3 = __Pyx_PyInt_From_unsigned_short(__pyx_v_self->defined_field_count); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 5, __pyx_L1_error)
9922 __Pyx_GOTREF(__pyx_t_3);
9923 __pyx_t_4 = __Pyx_PyInt_From_unsigned_short(__pyx_v_self->field_count); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 5, __pyx_L1_error)
9924 __Pyx_GOTREF(__pyx_t_4);
9925 __pyx_t_5 = __Pyx_PyBool_FromLong(__pyx_v_self->is_byteswapped); if (unlikely(!__pyx_t_5)) __PYX_ERR(2, 5, __pyx_L1_error)
9926 __Pyx_GOTREF(__pyx_t_5);
9927 __pyx_t_6 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->magic); if (unlikely(!__pyx_t_6)) __PYX_ERR(2, 5, __pyx_L1_error)
9928 __Pyx_GOTREF(__pyx_t_6);
9929 __pyx_t_7 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->total_summary_offset); if (unlikely(!__pyx_t_7)) __PYX_ERR(2, 5, __pyx_L1_error)
9930 __Pyx_GOTREF(__pyx_t_7);
9931 __pyx_t_8 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->uncompress_buf_size); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 5, __pyx_L1_error)
9932 __Pyx_GOTREF(__pyx_t_8);
9933 __pyx_t_9 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->unzoomed_data_offset); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 5, __pyx_L1_error)
9934 __Pyx_GOTREF(__pyx_t_9);
9935 __pyx_t_10 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->unzoomed_index_offset); if (unlikely(!__pyx_t_10)) __PYX_ERR(2, 5, __pyx_L1_error)
9936 __Pyx_GOTREF(__pyx_t_10);
9937 __pyx_t_11 = __Pyx_PyInt_From_unsigned_short(__pyx_v_self->version); if (unlikely(!__pyx_t_11)) __PYX_ERR(2, 5, __pyx_L1_error)
9938 __Pyx_GOTREF(__pyx_t_11);
9939 __pyx_t_12 = __Pyx_PyInt_From_unsigned_short(__pyx_v_self->zoom_levels); if (unlikely(!__pyx_t_12)) __PYX_ERR(2, 5, __pyx_L1_error)
9940 __Pyx_GOTREF(__pyx_t_12);
9941 __pyx_t_13 = PyTuple_New(16); if (unlikely(!__pyx_t_13)) __PYX_ERR(2, 5, __pyx_L1_error)
9942 __Pyx_GOTREF(__pyx_t_13);
9943 __Pyx_GIVEREF(__pyx_t_1);
9944 PyTuple_SET_ITEM(__pyx_t_13, 0, __pyx_t_1);
9945 __Pyx_INCREF(((PyObject *)__pyx_v_self->chrom_bpt));
9946 __Pyx_GIVEREF(((PyObject *)__pyx_v_self->chrom_bpt));
9947 PyTuple_SET_ITEM(__pyx_t_13, 1, ((PyObject *)__pyx_v_self->chrom_bpt));
9948 __Pyx_GIVEREF(__pyx_t_2);
9949 PyTuple_SET_ITEM(__pyx_t_13, 2, __pyx_t_2);
9950 __Pyx_GIVEREF(__pyx_t_3);
9951 PyTuple_SET_ITEM(__pyx_t_13, 3, __pyx_t_3);
9952 __Pyx_GIVEREF(__pyx_t_4);
9953 PyTuple_SET_ITEM(__pyx_t_13, 4, __pyx_t_4);
9954 __Pyx_INCREF(__pyx_v_self->file);
9955 __Pyx_GIVEREF(__pyx_v_self->file);
9956 PyTuple_SET_ITEM(__pyx_t_13, 5, __pyx_v_self->file);
9957 __Pyx_GIVEREF(__pyx_t_5);
9958 PyTuple_SET_ITEM(__pyx_t_13, 6, __pyx_t_5);
9959 __Pyx_INCREF(__pyx_v_self->level_list);
9960 __Pyx_GIVEREF(__pyx_v_self->level_list);
9961 PyTuple_SET_ITEM(__pyx_t_13, 7, __pyx_v_self->level_list);
9962 __Pyx_GIVEREF(__pyx_t_6);
9963 PyTuple_SET_ITEM(__pyx_t_13, 8, __pyx_t_6);
9964 __Pyx_INCREF(__pyx_v_self->reader);
9965 __Pyx_GIVEREF(__pyx_v_self->reader);
9966 PyTuple_SET_ITEM(__pyx_t_13, 9, __pyx_v_self->reader);
9967 __Pyx_GIVEREF(__pyx_t_7);
9968 PyTuple_SET_ITEM(__pyx_t_13, 10, __pyx_t_7);
9969 __Pyx_GIVEREF(__pyx_t_8);
9970 PyTuple_SET_ITEM(__pyx_t_13, 11, __pyx_t_8);
9971 __Pyx_GIVEREF(__pyx_t_9);
9972 PyTuple_SET_ITEM(__pyx_t_13, 12, __pyx_t_9);
9973 __Pyx_GIVEREF(__pyx_t_10);
9974 PyTuple_SET_ITEM(__pyx_t_13, 13, __pyx_t_10);
9975 __Pyx_GIVEREF(__pyx_t_11);
9976 PyTuple_SET_ITEM(__pyx_t_13, 14, __pyx_t_11);
9977 __Pyx_GIVEREF(__pyx_t_12);
9978 PyTuple_SET_ITEM(__pyx_t_13, 15, __pyx_t_12);
9979 __pyx_t_1 = 0;
9980 __pyx_t_2 = 0;
9981 __pyx_t_3 = 0;
9982 __pyx_t_4 = 0;
9983 __pyx_t_5 = 0;
9984 __pyx_t_6 = 0;
9985 __pyx_t_7 = 0;
9986 __pyx_t_8 = 0;
9987 __pyx_t_9 = 0;
9988 __pyx_t_10 = 0;
9989 __pyx_t_11 = 0;
9990 __pyx_t_12 = 0;
9991 __pyx_v_state = ((PyObject*)__pyx_t_13);
9992 __pyx_t_13 = 0;
9993
9994 /* "(tree fragment)":6
9995 * cdef bint use_setstate
9996 * state = (self.as_offset, self.chrom_bpt, self.chrom_tree_offset, self.defined_field_count, self.field_count, self.file, self.is_byteswapped, self.level_list, self.magic, self.reader, self.total_summary_offset, self.uncompress_buf_size, self.unzoomed_data_offset, self.unzoomed_index_offset, self.version, self.zoom_levels)
9997 * _dict = getattr(self, '__dict__', None) # <<<<<<<<<<<<<<
9998 * if _dict is not None:
9999 * state += (_dict,)
10000 */
10001 __pyx_t_13 = __Pyx_GetAttr3(((PyObject *)__pyx_v_self), __pyx_n_s_dict, Py_None); if (unlikely(!__pyx_t_13)) __PYX_ERR(2, 6, __pyx_L1_error)
10002 __Pyx_GOTREF(__pyx_t_13);
10003 __pyx_v__dict = __pyx_t_13;
10004 __pyx_t_13 = 0;
10005
10006 /* "(tree fragment)":7
10007 * state = (self.as_offset, self.chrom_bpt, self.chrom_tree_offset, self.defined_field_count, self.field_count, self.file, self.is_byteswapped, self.level_list, self.magic, self.reader, self.total_summary_offset, self.uncompress_buf_size, self.unzoomed_data_offset, self.unzoomed_index_offset, self.version, self.zoom_levels)
10008 * _dict = getattr(self, '__dict__', None)
10009 * if _dict is not None: # <<<<<<<<<<<<<<
10010 * state += (_dict,)
10011 * use_setstate = True
10012 */
10013 __pyx_t_14 = (__pyx_v__dict != Py_None);
10014 __pyx_t_15 = (__pyx_t_14 != 0);
10015 if (__pyx_t_15) {
10016
10017 /* "(tree fragment)":8
10018 * _dict = getattr(self, '__dict__', None)
10019 * if _dict is not None:
10020 * state += (_dict,) # <<<<<<<<<<<<<<
10021 * use_setstate = True
10022 * else:
10023 */
10024 __pyx_t_13 = PyTuple_New(1); if (unlikely(!__pyx_t_13)) __PYX_ERR(2, 8, __pyx_L1_error)
10025 __Pyx_GOTREF(__pyx_t_13);
10026 __Pyx_INCREF(__pyx_v__dict);
10027 __Pyx_GIVEREF(__pyx_v__dict);
10028 PyTuple_SET_ITEM(__pyx_t_13, 0, __pyx_v__dict);
10029 __pyx_t_12 = PyNumber_InPlaceAdd(__pyx_v_state, __pyx_t_13); if (unlikely(!__pyx_t_12)) __PYX_ERR(2, 8, __pyx_L1_error)
10030 __Pyx_GOTREF(__pyx_t_12);
10031 __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
10032 __Pyx_DECREF_SET(__pyx_v_state, ((PyObject*)__pyx_t_12));
10033 __pyx_t_12 = 0;
10034
10035 /* "(tree fragment)":9
10036 * if _dict is not None:
10037 * state += (_dict,)
10038 * use_setstate = True # <<<<<<<<<<<<<<
10039 * else:
10040 * use_setstate = self.chrom_bpt is not None or self.file is not None or self.level_list is not None or self.reader is not None
10041 */
10042 __pyx_v_use_setstate = 1;
10043
10044 /* "(tree fragment)":7
10045 * state = (self.as_offset, self.chrom_bpt, self.chrom_tree_offset, self.defined_field_count, self.field_count, self.file, self.is_byteswapped, self.level_list, self.magic, self.reader, self.total_summary_offset, self.uncompress_buf_size, self.unzoomed_data_offset, self.unzoomed_index_offset, self.version, self.zoom_levels)
10046 * _dict = getattr(self, '__dict__', None)
10047 * if _dict is not None: # <<<<<<<<<<<<<<
10048 * state += (_dict,)
10049 * use_setstate = True
10050 */
10051 goto __pyx_L3;
10052 }
10053
10054 /* "(tree fragment)":11
10055 * use_setstate = True
10056 * else:
10057 * use_setstate = self.chrom_bpt is not None or self.file is not None or self.level_list is not None or self.reader is not None # <<<<<<<<<<<<<<
10058 * if use_setstate:
10059 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, None), state
10060 */
10061 /*else*/ {
10062 __pyx_t_14 = (((PyObject *)__pyx_v_self->chrom_bpt) != Py_None);
10063 __pyx_t_16 = (__pyx_t_14 != 0);
10064 if (!__pyx_t_16) {
10065 } else {
10066 __pyx_t_15 = __pyx_t_16;
10067 goto __pyx_L4_bool_binop_done;
10068 }
10069 __pyx_t_16 = (__pyx_v_self->file != Py_None);
10070 __pyx_t_14 = (__pyx_t_16 != 0);
10071 if (!__pyx_t_14) {
10072 } else {
10073 __pyx_t_15 = __pyx_t_14;
10074 goto __pyx_L4_bool_binop_done;
10075 }
10076 __pyx_t_14 = (__pyx_v_self->level_list != Py_None);
10077 __pyx_t_16 = (__pyx_t_14 != 0);
10078 if (!__pyx_t_16) {
10079 } else {
10080 __pyx_t_15 = __pyx_t_16;
10081 goto __pyx_L4_bool_binop_done;
10082 }
10083 __pyx_t_16 = (__pyx_v_self->reader != Py_None);
10084 __pyx_t_14 = (__pyx_t_16 != 0);
10085 __pyx_t_15 = __pyx_t_14;
10086 __pyx_L4_bool_binop_done:;
10087 __pyx_v_use_setstate = __pyx_t_15;
10088 }
10089 __pyx_L3:;
10090
10091 /* "(tree fragment)":12
10092 * else:
10093 * use_setstate = self.chrom_bpt is not None or self.file is not None or self.level_list is not None or self.reader is not None
10094 * if use_setstate: # <<<<<<<<<<<<<<
10095 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, None), state
10096 * else:
10097 */
10098 __pyx_t_15 = (__pyx_v_use_setstate != 0);
10099 if (__pyx_t_15) {
10100
10101 /* "(tree fragment)":13
10102 * use_setstate = self.chrom_bpt is not None or self.file is not None or self.level_list is not None or self.reader is not None
10103 * if use_setstate:
10104 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, None), state # <<<<<<<<<<<<<<
10105 * else:
10106 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, state)
10107 */
10108 __Pyx_XDECREF(__pyx_r);
10109 __Pyx_GetModuleGlobalName(__pyx_t_12, __pyx_n_s_pyx_unpickle_BBIFile); if (unlikely(!__pyx_t_12)) __PYX_ERR(2, 13, __pyx_L1_error)
10110 __Pyx_GOTREF(__pyx_t_12);
10111 __pyx_t_13 = PyTuple_New(3); if (unlikely(!__pyx_t_13)) __PYX_ERR(2, 13, __pyx_L1_error)
10112 __Pyx_GOTREF(__pyx_t_13);
10113 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
10114 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
10115 PyTuple_SET_ITEM(__pyx_t_13, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
10116 __Pyx_INCREF(__pyx_int_89548920);
10117 __Pyx_GIVEREF(__pyx_int_89548920);
10118 PyTuple_SET_ITEM(__pyx_t_13, 1, __pyx_int_89548920);
10119 __Pyx_INCREF(Py_None);
10120 __Pyx_GIVEREF(Py_None);
10121 PyTuple_SET_ITEM(__pyx_t_13, 2, Py_None);
10122 __pyx_t_11 = PyTuple_New(3); if (unlikely(!__pyx_t_11)) __PYX_ERR(2, 13, __pyx_L1_error)
10123 __Pyx_GOTREF(__pyx_t_11);
10124 __Pyx_GIVEREF(__pyx_t_12);
10125 PyTuple_SET_ITEM(__pyx_t_11, 0, __pyx_t_12);
10126 __Pyx_GIVEREF(__pyx_t_13);
10127 PyTuple_SET_ITEM(__pyx_t_11, 1, __pyx_t_13);
10128 __Pyx_INCREF(__pyx_v_state);
10129 __Pyx_GIVEREF(__pyx_v_state);
10130 PyTuple_SET_ITEM(__pyx_t_11, 2, __pyx_v_state);
10131 __pyx_t_12 = 0;
10132 __pyx_t_13 = 0;
10133 __pyx_r = __pyx_t_11;
10134 __pyx_t_11 = 0;
10135 goto __pyx_L0;
10136
10137 /* "(tree fragment)":12
10138 * else:
10139 * use_setstate = self.chrom_bpt is not None or self.file is not None or self.level_list is not None or self.reader is not None
10140 * if use_setstate: # <<<<<<<<<<<<<<
10141 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, None), state
10142 * else:
10143 */
10144 }
10145
10146 /* "(tree fragment)":15
10147 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, None), state
10148 * else:
10149 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, state) # <<<<<<<<<<<<<<
10150 * def __setstate_cython__(self, __pyx_state):
10151 * __pyx_unpickle_BBIFile__set_state(self, __pyx_state)
10152 */
10153 /*else*/ {
10154 __Pyx_XDECREF(__pyx_r);
10155 __Pyx_GetModuleGlobalName(__pyx_t_11, __pyx_n_s_pyx_unpickle_BBIFile); if (unlikely(!__pyx_t_11)) __PYX_ERR(2, 15, __pyx_L1_error)
10156 __Pyx_GOTREF(__pyx_t_11);
10157 __pyx_t_13 = PyTuple_New(3); if (unlikely(!__pyx_t_13)) __PYX_ERR(2, 15, __pyx_L1_error)
10158 __Pyx_GOTREF(__pyx_t_13);
10159 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
10160 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
10161 PyTuple_SET_ITEM(__pyx_t_13, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
10162 __Pyx_INCREF(__pyx_int_89548920);
10163 __Pyx_GIVEREF(__pyx_int_89548920);
10164 PyTuple_SET_ITEM(__pyx_t_13, 1, __pyx_int_89548920);
10165 __Pyx_INCREF(__pyx_v_state);
10166 __Pyx_GIVEREF(__pyx_v_state);
10167 PyTuple_SET_ITEM(__pyx_t_13, 2, __pyx_v_state);
10168 __pyx_t_12 = PyTuple_New(2); if (unlikely(!__pyx_t_12)) __PYX_ERR(2, 15, __pyx_L1_error)
10169 __Pyx_GOTREF(__pyx_t_12);
10170 __Pyx_GIVEREF(__pyx_t_11);
10171 PyTuple_SET_ITEM(__pyx_t_12, 0, __pyx_t_11);
10172 __Pyx_GIVEREF(__pyx_t_13);
10173 PyTuple_SET_ITEM(__pyx_t_12, 1, __pyx_t_13);
10174 __pyx_t_11 = 0;
10175 __pyx_t_13 = 0;
10176 __pyx_r = __pyx_t_12;
10177 __pyx_t_12 = 0;
10178 goto __pyx_L0;
10179 }
10180
10181 /* "(tree fragment)":1
10182 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
10183 * cdef tuple state
10184 * cdef object _dict
10185 */
10186
10187 /* function exit code */
10188 __pyx_L1_error:;
10189 __Pyx_XDECREF(__pyx_t_1);
10190 __Pyx_XDECREF(__pyx_t_2);
10191 __Pyx_XDECREF(__pyx_t_3);
10192 __Pyx_XDECREF(__pyx_t_4);
10193 __Pyx_XDECREF(__pyx_t_5);
10194 __Pyx_XDECREF(__pyx_t_6);
10195 __Pyx_XDECREF(__pyx_t_7);
10196 __Pyx_XDECREF(__pyx_t_8);
10197 __Pyx_XDECREF(__pyx_t_9);
10198 __Pyx_XDECREF(__pyx_t_10);
10199 __Pyx_XDECREF(__pyx_t_11);
10200 __Pyx_XDECREF(__pyx_t_12);
10201 __Pyx_XDECREF(__pyx_t_13);
10202 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
10203 __pyx_r = NULL;
10204 __pyx_L0:;
10205 __Pyx_XDECREF(__pyx_v_state);
10206 __Pyx_XDECREF(__pyx_v__dict);
10207 __Pyx_XGIVEREF(__pyx_r);
10208 __Pyx_RefNannyFinishContext();
10209 return __pyx_r;
10210 }
10211
10212 /* "(tree fragment)":16
10213 * else:
10214 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, state)
10215 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
10216 * __pyx_unpickle_BBIFile__set_state(self, __pyx_state)
10217 */
10218
10219 /* Python wrapper */
10220 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_13__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_13__setstate_cython__(PyObject * __pyx_v_self,PyObject * __pyx_v___pyx_state)10221 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_13__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
10222 PyObject *__pyx_r = 0;
10223 __Pyx_RefNannyDeclarations
10224 __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
10225 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_12__setstate_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));
10226
10227 /* function exit code */
10228 __Pyx_RefNannyFinishContext();
10229 return __pyx_r;
10230 }
10231
__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_12__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v_self,PyObject * __pyx_v___pyx_state)10232 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_7BBIFile_12__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
10233 PyObject *__pyx_r = NULL;
10234 __Pyx_RefNannyDeclarations
10235 PyObject *__pyx_t_1 = NULL;
10236 int __pyx_lineno = 0;
10237 const char *__pyx_filename = NULL;
10238 int __pyx_clineno = 0;
10239 __Pyx_RefNannySetupContext("__setstate_cython__", 0);
10240
10241 /* "(tree fragment)":17
10242 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, state)
10243 * def __setstate_cython__(self, __pyx_state):
10244 * __pyx_unpickle_BBIFile__set_state(self, __pyx_state) # <<<<<<<<<<<<<<
10245 */
10246 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 17, __pyx_L1_error)
10247 __pyx_t_1 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BBIFile__set_state(__pyx_v_self, ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 17, __pyx_L1_error)
10248 __Pyx_GOTREF(__pyx_t_1);
10249 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10250
10251 /* "(tree fragment)":16
10252 * else:
10253 * return __pyx_unpickle_BBIFile, (type(self), 0x5566878, state)
10254 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
10255 * __pyx_unpickle_BBIFile__set_state(self, __pyx_state)
10256 */
10257
10258 /* function exit code */
10259 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
10260 goto __pyx_L0;
10261 __pyx_L1_error:;
10262 __Pyx_XDECREF(__pyx_t_1);
10263 __Pyx_AddTraceback("bx.bbi.bbi_file.BBIFile.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
10264 __pyx_r = NULL;
10265 __pyx_L0:;
10266 __Pyx_XGIVEREF(__pyx_r);
10267 __Pyx_RefNannyFinishContext();
10268 return __pyx_r;
10269 }
10270
10271 /* "bx/bbi/bbi_file.pyx":300
10272 * cdef int item_count
10273 *
10274 * def _summary_blocks_in_region( self, bits32 chrom_id, bits32 start, bits32 end ): # <<<<<<<<<<<<<<
10275 * """
10276 * Return a list of all SummaryBlocks that overlap the region
10277 */
10278
10279 /* Python wrapper */
10280 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_1_summary_blocks_in_region(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
10281 static char __pyx_doc_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region[] = "\n Return a list of all SummaryBlocks that overlap the region \n `chrom_id`:`start`-`end`\n ";
__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_1_summary_blocks_in_region(PyObject * __pyx_v_self,PyObject * __pyx_args,PyObject * __pyx_kwds)10282 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_1_summary_blocks_in_region(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
10283 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id;
10284 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start;
10285 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end;
10286 int __pyx_lineno = 0;
10287 const char *__pyx_filename = NULL;
10288 int __pyx_clineno = 0;
10289 PyObject *__pyx_r = 0;
10290 __Pyx_RefNannyDeclarations
10291 __Pyx_RefNannySetupContext("_summary_blocks_in_region (wrapper)", 0);
10292 {
10293 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_chrom_id,&__pyx_n_s_start,&__pyx_n_s_end,0};
10294 PyObject* values[3] = {0,0,0};
10295 if (unlikely(__pyx_kwds)) {
10296 Py_ssize_t kw_args;
10297 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
10298 switch (pos_args) {
10299 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
10300 CYTHON_FALLTHROUGH;
10301 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
10302 CYTHON_FALLTHROUGH;
10303 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
10304 CYTHON_FALLTHROUGH;
10305 case 0: break;
10306 default: goto __pyx_L5_argtuple_error;
10307 }
10308 kw_args = PyDict_Size(__pyx_kwds);
10309 switch (pos_args) {
10310 case 0:
10311 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_chrom_id)) != 0)) kw_args--;
10312 else goto __pyx_L5_argtuple_error;
10313 CYTHON_FALLTHROUGH;
10314 case 1:
10315 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_start)) != 0)) kw_args--;
10316 else {
10317 __Pyx_RaiseArgtupleInvalid("_summary_blocks_in_region", 1, 3, 3, 1); __PYX_ERR(0, 300, __pyx_L3_error)
10318 }
10319 CYTHON_FALLTHROUGH;
10320 case 2:
10321 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_end)) != 0)) kw_args--;
10322 else {
10323 __Pyx_RaiseArgtupleInvalid("_summary_blocks_in_region", 1, 3, 3, 2); __PYX_ERR(0, 300, __pyx_L3_error)
10324 }
10325 }
10326 if (unlikely(kw_args > 0)) {
10327 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "_summary_blocks_in_region") < 0)) __PYX_ERR(0, 300, __pyx_L3_error)
10328 }
10329 } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
10330 goto __pyx_L5_argtuple_error;
10331 } else {
10332 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
10333 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
10334 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
10335 }
10336 __pyx_v_chrom_id = __Pyx_PyInt_As_unsigned_int(values[0]); if (unlikely((__pyx_v_chrom_id == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 300, __pyx_L3_error)
10337 __pyx_v_start = __Pyx_PyInt_As_unsigned_int(values[1]); if (unlikely((__pyx_v_start == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 300, __pyx_L3_error)
10338 __pyx_v_end = __Pyx_PyInt_As_unsigned_int(values[2]); if (unlikely((__pyx_v_end == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 300, __pyx_L3_error)
10339 }
10340 goto __pyx_L4_argument_unpacking_done;
10341 __pyx_L5_argtuple_error:;
10342 __Pyx_RaiseArgtupleInvalid("_summary_blocks_in_region", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 300, __pyx_L3_error)
10343 __pyx_L3_error:;
10344 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel._summary_blocks_in_region", __pyx_clineno, __pyx_lineno, __pyx_filename);
10345 __Pyx_RefNannyFinishContext();
10346 return NULL;
10347 __pyx_L4_argument_unpacking_done:;
10348 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self), __pyx_v_chrom_id, __pyx_v_start, __pyx_v_end);
10349
10350 /* function exit code */
10351 __Pyx_RefNannyFinishContext();
10352 return __pyx_r;
10353 }
10354
__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end)10355 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end) {
10356 struct __pyx_obj_2bx_3bbi_12cirtree_file_CIRTreeFile *__pyx_v_ctf = 0;
10357 struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v_summary = 0;
10358 PyObject *__pyx_v_rval = NULL;
10359 PyObject *__pyx_v_reader = NULL;
10360 PyObject *__pyx_v_block_list = NULL;
10361 PyObject *__pyx_v_offset = NULL;
10362 PyObject *__pyx_v_size = NULL;
10363 PyObject *__pyx_v_block_data = NULL;
10364 PyObject *__pyx_v_block_size = NULL;
10365 PyObject *__pyx_v_item_count = NULL;
10366 PyObject *__pyx_v_block_reader = NULL;
10367 CYTHON_UNUSED long __pyx_v_i;
10368 PyObject *__pyx_v_sum_chrom_id = NULL;
10369 PyObject *__pyx_r = NULL;
10370 __Pyx_RefNannyDeclarations
10371 PyObject *__pyx_t_1 = NULL;
10372 PyObject *__pyx_t_2 = NULL;
10373 PyObject *__pyx_t_3 = NULL;
10374 PyObject *__pyx_t_4 = NULL;
10375 PyObject *__pyx_t_5 = NULL;
10376 PyObject *__pyx_t_6 = NULL;
10377 int __pyx_t_7;
10378 PyObject *__pyx_t_8 = NULL;
10379 Py_ssize_t __pyx_t_9;
10380 PyObject *(*__pyx_t_10)(PyObject *);
10381 PyObject *(*__pyx_t_11)(PyObject *);
10382 int __pyx_t_12;
10383 Py_ssize_t __pyx_t_13;
10384 long __pyx_t_14;
10385 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_15;
10386 double __pyx_t_16;
10387 int __pyx_t_17;
10388 int __pyx_lineno = 0;
10389 const char *__pyx_filename = NULL;
10390 int __pyx_clineno = 0;
10391 __Pyx_RefNannySetupContext("_summary_blocks_in_region", 0);
10392
10393 /* "bx/bbi/bbi_file.pyx":307
10394 * cdef CIRTreeFile ctf
10395 * cdef SummaryBlock summary
10396 * rval = deque() # <<<<<<<<<<<<<<
10397 * reader = self.bbi_file.reader
10398 * reader.seek( self.index_offset )
10399 */
10400 __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_deque); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 307, __pyx_L1_error)
10401 __Pyx_GOTREF(__pyx_t_2);
10402 __pyx_t_3 = NULL;
10403 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_2))) {
10404 __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2);
10405 if (likely(__pyx_t_3)) {
10406 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
10407 __Pyx_INCREF(__pyx_t_3);
10408 __Pyx_INCREF(function);
10409 __Pyx_DECREF_SET(__pyx_t_2, function);
10410 }
10411 }
10412 __pyx_t_1 = (__pyx_t_3) ? __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_3) : __Pyx_PyObject_CallNoArg(__pyx_t_2);
10413 __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
10414 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 307, __pyx_L1_error)
10415 __Pyx_GOTREF(__pyx_t_1);
10416 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10417 __pyx_v_rval = __pyx_t_1;
10418 __pyx_t_1 = 0;
10419
10420 /* "bx/bbi/bbi_file.pyx":308
10421 * cdef SummaryBlock summary
10422 * rval = deque()
10423 * reader = self.bbi_file.reader # <<<<<<<<<<<<<<
10424 * reader.seek( self.index_offset )
10425 * ctf = CIRTreeFile( reader.file )
10426 */
10427 __pyx_t_1 = __pyx_v_self->bbi_file->reader;
10428 __Pyx_INCREF(__pyx_t_1);
10429 __pyx_v_reader = __pyx_t_1;
10430 __pyx_t_1 = 0;
10431
10432 /* "bx/bbi/bbi_file.pyx":309
10433 * rval = deque()
10434 * reader = self.bbi_file.reader
10435 * reader.seek( self.index_offset ) # <<<<<<<<<<<<<<
10436 * ctf = CIRTreeFile( reader.file )
10437 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end )
10438 */
10439 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_seek); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 309, __pyx_L1_error)
10440 __Pyx_GOTREF(__pyx_t_2);
10441 __pyx_t_3 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->index_offset); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 309, __pyx_L1_error)
10442 __Pyx_GOTREF(__pyx_t_3);
10443 __pyx_t_4 = NULL;
10444 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
10445 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_2);
10446 if (likely(__pyx_t_4)) {
10447 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
10448 __Pyx_INCREF(__pyx_t_4);
10449 __Pyx_INCREF(function);
10450 __Pyx_DECREF_SET(__pyx_t_2, function);
10451 }
10452 }
10453 __pyx_t_1 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_4, __pyx_t_3) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_3);
10454 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
10455 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
10456 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 309, __pyx_L1_error)
10457 __Pyx_GOTREF(__pyx_t_1);
10458 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10459 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10460
10461 /* "bx/bbi/bbi_file.pyx":310
10462 * reader = self.bbi_file.reader
10463 * reader.seek( self.index_offset )
10464 * ctf = CIRTreeFile( reader.file ) # <<<<<<<<<<<<<<
10465 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end )
10466 * for offset, size in block_list:
10467 */
10468 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_file); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 310, __pyx_L1_error)
10469 __Pyx_GOTREF(__pyx_t_1);
10470 __pyx_t_2 = __Pyx_PyObject_CallOneArg(((PyObject *)__pyx_ptype_2bx_3bbi_12cirtree_file_CIRTreeFile), __pyx_t_1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 310, __pyx_L1_error)
10471 __Pyx_GOTREF(__pyx_t_2);
10472 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10473 __pyx_v_ctf = ((struct __pyx_obj_2bx_3bbi_12cirtree_file_CIRTreeFile *)__pyx_t_2);
10474 __pyx_t_2 = 0;
10475
10476 /* "bx/bbi/bbi_file.pyx":311
10477 * reader.seek( self.index_offset )
10478 * ctf = CIRTreeFile( reader.file )
10479 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end ) # <<<<<<<<<<<<<<
10480 * for offset, size in block_list:
10481 * # Seek to and read all data for the block
10482 */
10483 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_ctf), __pyx_n_s_find_overlapping_blocks); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 311, __pyx_L1_error)
10484 __Pyx_GOTREF(__pyx_t_1);
10485 __pyx_t_3 = __Pyx_PyInt_From_unsigned_int(__pyx_v_chrom_id); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 311, __pyx_L1_error)
10486 __Pyx_GOTREF(__pyx_t_3);
10487 __pyx_t_4 = __Pyx_PyInt_From_unsigned_int(__pyx_v_start); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 311, __pyx_L1_error)
10488 __Pyx_GOTREF(__pyx_t_4);
10489 __pyx_t_5 = __Pyx_PyInt_From_unsigned_int(__pyx_v_end); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 311, __pyx_L1_error)
10490 __Pyx_GOTREF(__pyx_t_5);
10491 __pyx_t_6 = NULL;
10492 __pyx_t_7 = 0;
10493 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_1))) {
10494 __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_1);
10495 if (likely(__pyx_t_6)) {
10496 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
10497 __Pyx_INCREF(__pyx_t_6);
10498 __Pyx_INCREF(function);
10499 __Pyx_DECREF_SET(__pyx_t_1, function);
10500 __pyx_t_7 = 1;
10501 }
10502 }
10503 #if CYTHON_FAST_PYCALL
10504 if (PyFunction_Check(__pyx_t_1)) {
10505 PyObject *__pyx_temp[4] = {__pyx_t_6, __pyx_t_3, __pyx_t_4, __pyx_t_5};
10506 __pyx_t_2 = __Pyx_PyFunction_FastCall(__pyx_t_1, __pyx_temp+1-__pyx_t_7, 3+__pyx_t_7); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 311, __pyx_L1_error)
10507 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
10508 __Pyx_GOTREF(__pyx_t_2);
10509 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
10510 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
10511 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
10512 } else
10513 #endif
10514 #if CYTHON_FAST_PYCCALL
10515 if (__Pyx_PyFastCFunction_Check(__pyx_t_1)) {
10516 PyObject *__pyx_temp[4] = {__pyx_t_6, __pyx_t_3, __pyx_t_4, __pyx_t_5};
10517 __pyx_t_2 = __Pyx_PyCFunction_FastCall(__pyx_t_1, __pyx_temp+1-__pyx_t_7, 3+__pyx_t_7); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 311, __pyx_L1_error)
10518 __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
10519 __Pyx_GOTREF(__pyx_t_2);
10520 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
10521 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
10522 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
10523 } else
10524 #endif
10525 {
10526 __pyx_t_8 = PyTuple_New(3+__pyx_t_7); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 311, __pyx_L1_error)
10527 __Pyx_GOTREF(__pyx_t_8);
10528 if (__pyx_t_6) {
10529 __Pyx_GIVEREF(__pyx_t_6); PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_6); __pyx_t_6 = NULL;
10530 }
10531 __Pyx_GIVEREF(__pyx_t_3);
10532 PyTuple_SET_ITEM(__pyx_t_8, 0+__pyx_t_7, __pyx_t_3);
10533 __Pyx_GIVEREF(__pyx_t_4);
10534 PyTuple_SET_ITEM(__pyx_t_8, 1+__pyx_t_7, __pyx_t_4);
10535 __Pyx_GIVEREF(__pyx_t_5);
10536 PyTuple_SET_ITEM(__pyx_t_8, 2+__pyx_t_7, __pyx_t_5);
10537 __pyx_t_3 = 0;
10538 __pyx_t_4 = 0;
10539 __pyx_t_5 = 0;
10540 __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_1, __pyx_t_8, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 311, __pyx_L1_error)
10541 __Pyx_GOTREF(__pyx_t_2);
10542 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
10543 }
10544 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10545 __pyx_v_block_list = __pyx_t_2;
10546 __pyx_t_2 = 0;
10547
10548 /* "bx/bbi/bbi_file.pyx":312
10549 * ctf = CIRTreeFile( reader.file )
10550 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end )
10551 * for offset, size in block_list: # <<<<<<<<<<<<<<
10552 * # Seek to and read all data for the block
10553 * reader.seek( offset )
10554 */
10555 if (likely(PyList_CheckExact(__pyx_v_block_list)) || PyTuple_CheckExact(__pyx_v_block_list)) {
10556 __pyx_t_2 = __pyx_v_block_list; __Pyx_INCREF(__pyx_t_2); __pyx_t_9 = 0;
10557 __pyx_t_10 = NULL;
10558 } else {
10559 __pyx_t_9 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_v_block_list); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 312, __pyx_L1_error)
10560 __Pyx_GOTREF(__pyx_t_2);
10561 __pyx_t_10 = Py_TYPE(__pyx_t_2)->tp_iternext; if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 312, __pyx_L1_error)
10562 }
10563 for (;;) {
10564 if (likely(!__pyx_t_10)) {
10565 if (likely(PyList_CheckExact(__pyx_t_2))) {
10566 if (__pyx_t_9 >= PyList_GET_SIZE(__pyx_t_2)) break;
10567 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
10568 __pyx_t_1 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_9); __Pyx_INCREF(__pyx_t_1); __pyx_t_9++; if (unlikely(0 < 0)) __PYX_ERR(0, 312, __pyx_L1_error)
10569 #else
10570 __pyx_t_1 = PySequence_ITEM(__pyx_t_2, __pyx_t_9); __pyx_t_9++; if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 312, __pyx_L1_error)
10571 __Pyx_GOTREF(__pyx_t_1);
10572 #endif
10573 } else {
10574 if (__pyx_t_9 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
10575 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
10576 __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_9); __Pyx_INCREF(__pyx_t_1); __pyx_t_9++; if (unlikely(0 < 0)) __PYX_ERR(0, 312, __pyx_L1_error)
10577 #else
10578 __pyx_t_1 = PySequence_ITEM(__pyx_t_2, __pyx_t_9); __pyx_t_9++; if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 312, __pyx_L1_error)
10579 __Pyx_GOTREF(__pyx_t_1);
10580 #endif
10581 }
10582 } else {
10583 __pyx_t_1 = __pyx_t_10(__pyx_t_2);
10584 if (unlikely(!__pyx_t_1)) {
10585 PyObject* exc_type = PyErr_Occurred();
10586 if (exc_type) {
10587 if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
10588 else __PYX_ERR(0, 312, __pyx_L1_error)
10589 }
10590 break;
10591 }
10592 __Pyx_GOTREF(__pyx_t_1);
10593 }
10594 if ((likely(PyTuple_CheckExact(__pyx_t_1))) || (PyList_CheckExact(__pyx_t_1))) {
10595 PyObject* sequence = __pyx_t_1;
10596 Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
10597 if (unlikely(size != 2)) {
10598 if (size > 2) __Pyx_RaiseTooManyValuesError(2);
10599 else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
10600 __PYX_ERR(0, 312, __pyx_L1_error)
10601 }
10602 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
10603 if (likely(PyTuple_CheckExact(sequence))) {
10604 __pyx_t_8 = PyTuple_GET_ITEM(sequence, 0);
10605 __pyx_t_5 = PyTuple_GET_ITEM(sequence, 1);
10606 } else {
10607 __pyx_t_8 = PyList_GET_ITEM(sequence, 0);
10608 __pyx_t_5 = PyList_GET_ITEM(sequence, 1);
10609 }
10610 __Pyx_INCREF(__pyx_t_8);
10611 __Pyx_INCREF(__pyx_t_5);
10612 #else
10613 __pyx_t_8 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 312, __pyx_L1_error)
10614 __Pyx_GOTREF(__pyx_t_8);
10615 __pyx_t_5 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 312, __pyx_L1_error)
10616 __Pyx_GOTREF(__pyx_t_5);
10617 #endif
10618 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10619 } else {
10620 Py_ssize_t index = -1;
10621 __pyx_t_4 = PyObject_GetIter(__pyx_t_1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 312, __pyx_L1_error)
10622 __Pyx_GOTREF(__pyx_t_4);
10623 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10624 __pyx_t_11 = Py_TYPE(__pyx_t_4)->tp_iternext;
10625 index = 0; __pyx_t_8 = __pyx_t_11(__pyx_t_4); if (unlikely(!__pyx_t_8)) goto __pyx_L5_unpacking_failed;
10626 __Pyx_GOTREF(__pyx_t_8);
10627 index = 1; __pyx_t_5 = __pyx_t_11(__pyx_t_4); if (unlikely(!__pyx_t_5)) goto __pyx_L5_unpacking_failed;
10628 __Pyx_GOTREF(__pyx_t_5);
10629 if (__Pyx_IternextUnpackEndCheck(__pyx_t_11(__pyx_t_4), 2) < 0) __PYX_ERR(0, 312, __pyx_L1_error)
10630 __pyx_t_11 = NULL;
10631 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
10632 goto __pyx_L6_unpacking_done;
10633 __pyx_L5_unpacking_failed:;
10634 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
10635 __pyx_t_11 = NULL;
10636 if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
10637 __PYX_ERR(0, 312, __pyx_L1_error)
10638 __pyx_L6_unpacking_done:;
10639 }
10640 __Pyx_XDECREF_SET(__pyx_v_offset, __pyx_t_8);
10641 __pyx_t_8 = 0;
10642 __Pyx_XDECREF_SET(__pyx_v_size, __pyx_t_5);
10643 __pyx_t_5 = 0;
10644
10645 /* "bx/bbi/bbi_file.pyx":314
10646 * for offset, size in block_list:
10647 * # Seek to and read all data for the block
10648 * reader.seek( offset ) # <<<<<<<<<<<<<<
10649 * block_data = reader.read( size )
10650 * # Might need to uncompress
10651 */
10652 __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_seek); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 314, __pyx_L1_error)
10653 __Pyx_GOTREF(__pyx_t_5);
10654 __pyx_t_8 = NULL;
10655 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
10656 __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_5);
10657 if (likely(__pyx_t_8)) {
10658 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
10659 __Pyx_INCREF(__pyx_t_8);
10660 __Pyx_INCREF(function);
10661 __Pyx_DECREF_SET(__pyx_t_5, function);
10662 }
10663 }
10664 __pyx_t_1 = (__pyx_t_8) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_8, __pyx_v_offset) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_v_offset);
10665 __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
10666 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 314, __pyx_L1_error)
10667 __Pyx_GOTREF(__pyx_t_1);
10668 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
10669 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10670
10671 /* "bx/bbi/bbi_file.pyx":315
10672 * # Seek to and read all data for the block
10673 * reader.seek( offset )
10674 * block_data = reader.read( size ) # <<<<<<<<<<<<<<
10675 * # Might need to uncompress
10676 * if self.bbi_file.uncompress_buf_size > 0:
10677 */
10678 __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_read); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 315, __pyx_L1_error)
10679 __Pyx_GOTREF(__pyx_t_5);
10680 __pyx_t_8 = NULL;
10681 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
10682 __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_5);
10683 if (likely(__pyx_t_8)) {
10684 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
10685 __Pyx_INCREF(__pyx_t_8);
10686 __Pyx_INCREF(function);
10687 __Pyx_DECREF_SET(__pyx_t_5, function);
10688 }
10689 }
10690 __pyx_t_1 = (__pyx_t_8) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_8, __pyx_v_size) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_v_size);
10691 __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
10692 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 315, __pyx_L1_error)
10693 __Pyx_GOTREF(__pyx_t_1);
10694 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
10695 __Pyx_XDECREF_SET(__pyx_v_block_data, __pyx_t_1);
10696 __pyx_t_1 = 0;
10697
10698 /* "bx/bbi/bbi_file.pyx":317
10699 * block_data = reader.read( size )
10700 * # Might need to uncompress
10701 * if self.bbi_file.uncompress_buf_size > 0: # <<<<<<<<<<<<<<
10702 * ## block_data = zlib.decompress( block_data, buf_size = self.bbi_file.uncompress_buf_size )
10703 * block_data = zlib.decompress( block_data )
10704 */
10705 __pyx_t_12 = ((__pyx_v_self->bbi_file->uncompress_buf_size > 0) != 0);
10706 if (__pyx_t_12) {
10707
10708 /* "bx/bbi/bbi_file.pyx":319
10709 * if self.bbi_file.uncompress_buf_size > 0:
10710 * ## block_data = zlib.decompress( block_data, buf_size = self.bbi_file.uncompress_buf_size )
10711 * block_data = zlib.decompress( block_data ) # <<<<<<<<<<<<<<
10712 * block_size = len( block_data )
10713 * # The block should be a bunch of summaries.
10714 */
10715 __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_zlib); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 319, __pyx_L1_error)
10716 __Pyx_GOTREF(__pyx_t_5);
10717 __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_decompress); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 319, __pyx_L1_error)
10718 __Pyx_GOTREF(__pyx_t_8);
10719 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
10720 __pyx_t_5 = NULL;
10721 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_8))) {
10722 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_8);
10723 if (likely(__pyx_t_5)) {
10724 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_8);
10725 __Pyx_INCREF(__pyx_t_5);
10726 __Pyx_INCREF(function);
10727 __Pyx_DECREF_SET(__pyx_t_8, function);
10728 }
10729 }
10730 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_8, __pyx_t_5, __pyx_v_block_data) : __Pyx_PyObject_CallOneArg(__pyx_t_8, __pyx_v_block_data);
10731 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
10732 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 319, __pyx_L1_error)
10733 __Pyx_GOTREF(__pyx_t_1);
10734 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
10735 __Pyx_DECREF_SET(__pyx_v_block_data, __pyx_t_1);
10736 __pyx_t_1 = 0;
10737
10738 /* "bx/bbi/bbi_file.pyx":317
10739 * block_data = reader.read( size )
10740 * # Might need to uncompress
10741 * if self.bbi_file.uncompress_buf_size > 0: # <<<<<<<<<<<<<<
10742 * ## block_data = zlib.decompress( block_data, buf_size = self.bbi_file.uncompress_buf_size )
10743 * block_data = zlib.decompress( block_data )
10744 */
10745 }
10746
10747 /* "bx/bbi/bbi_file.pyx":320
10748 * ## block_data = zlib.decompress( block_data, buf_size = self.bbi_file.uncompress_buf_size )
10749 * block_data = zlib.decompress( block_data )
10750 * block_size = len( block_data ) # <<<<<<<<<<<<<<
10751 * # The block should be a bunch of summaries.
10752 * assert block_size % summary_on_disk_size == 0
10753 */
10754 __pyx_t_13 = PyObject_Length(__pyx_v_block_data); if (unlikely(__pyx_t_13 == ((Py_ssize_t)-1))) __PYX_ERR(0, 320, __pyx_L1_error)
10755 __pyx_t_1 = PyInt_FromSsize_t(__pyx_t_13); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 320, __pyx_L1_error)
10756 __Pyx_GOTREF(__pyx_t_1);
10757 __Pyx_XDECREF_SET(__pyx_v_block_size, __pyx_t_1);
10758 __pyx_t_1 = 0;
10759
10760 /* "bx/bbi/bbi_file.pyx":322
10761 * block_size = len( block_data )
10762 * # The block should be a bunch of summaries.
10763 * assert block_size % summary_on_disk_size == 0 # <<<<<<<<<<<<<<
10764 * item_count = block_size / summary_on_disk_size
10765 * # Create another reader just for the block, shouldn't be too expensive
10766 */
10767 #ifndef CYTHON_WITHOUT_ASSERTIONS
10768 if (unlikely(!Py_OptimizeFlag)) {
10769 __pyx_t_1 = __Pyx_PyInt_RemainderObjC(__pyx_v_block_size, __pyx_int_32, 32, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 322, __pyx_L1_error)
10770 __Pyx_GOTREF(__pyx_t_1);
10771 __pyx_t_8 = __Pyx_PyInt_EqObjC(__pyx_t_1, __pyx_int_0, 0, 0); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 322, __pyx_L1_error)
10772 __Pyx_GOTREF(__pyx_t_8);
10773 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10774 __pyx_t_12 = __Pyx_PyObject_IsTrue(__pyx_t_8); if (unlikely(__pyx_t_12 < 0)) __PYX_ERR(0, 322, __pyx_L1_error)
10775 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
10776 if (unlikely(!__pyx_t_12)) {
10777 PyErr_SetNone(PyExc_AssertionError);
10778 __PYX_ERR(0, 322, __pyx_L1_error)
10779 }
10780 }
10781 #endif
10782
10783 /* "bx/bbi/bbi_file.pyx":323
10784 * # The block should be a bunch of summaries.
10785 * assert block_size % summary_on_disk_size == 0
10786 * item_count = block_size / summary_on_disk_size # <<<<<<<<<<<<<<
10787 * # Create another reader just for the block, shouldn't be too expensive
10788 * block_reader = BinaryFileReader( BytesIO( block_data ), is_little_endian=reader.is_little_endian )
10789 */
10790 __pyx_t_8 = __Pyx_PyNumber_Divide(__pyx_v_block_size, __pyx_int_32); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 323, __pyx_L1_error)
10791 __Pyx_GOTREF(__pyx_t_8);
10792 __Pyx_XDECREF_SET(__pyx_v_item_count, __pyx_t_8);
10793 __pyx_t_8 = 0;
10794
10795 /* "bx/bbi/bbi_file.pyx":325
10796 * item_count = block_size / summary_on_disk_size
10797 * # Create another reader just for the block, shouldn't be too expensive
10798 * block_reader = BinaryFileReader( BytesIO( block_data ), is_little_endian=reader.is_little_endian ) # <<<<<<<<<<<<<<
10799 * for i from 0 <= i < item_count:
10800 * ## NOTE: Look carefully at bbiRead again to be sure the endian
10801 */
10802 __Pyx_GetModuleGlobalName(__pyx_t_8, __pyx_n_s_BinaryFileReader); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 325, __pyx_L1_error)
10803 __Pyx_GOTREF(__pyx_t_8);
10804 __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_BytesIO); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 325, __pyx_L1_error)
10805 __Pyx_GOTREF(__pyx_t_5);
10806 __pyx_t_4 = NULL;
10807 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_5))) {
10808 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_5);
10809 if (likely(__pyx_t_4)) {
10810 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
10811 __Pyx_INCREF(__pyx_t_4);
10812 __Pyx_INCREF(function);
10813 __Pyx_DECREF_SET(__pyx_t_5, function);
10814 }
10815 }
10816 __pyx_t_1 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_4, __pyx_v_block_data) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_v_block_data);
10817 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
10818 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 325, __pyx_L1_error)
10819 __Pyx_GOTREF(__pyx_t_1);
10820 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
10821 __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 325, __pyx_L1_error)
10822 __Pyx_GOTREF(__pyx_t_5);
10823 __Pyx_GIVEREF(__pyx_t_1);
10824 PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_1);
10825 __pyx_t_1 = 0;
10826 __pyx_t_1 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 325, __pyx_L1_error)
10827 __Pyx_GOTREF(__pyx_t_1);
10828 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_is_little_endian); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 325, __pyx_L1_error)
10829 __Pyx_GOTREF(__pyx_t_4);
10830 if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_is_little_endian, __pyx_t_4) < 0) __PYX_ERR(0, 325, __pyx_L1_error)
10831 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
10832 __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_8, __pyx_t_5, __pyx_t_1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 325, __pyx_L1_error)
10833 __Pyx_GOTREF(__pyx_t_4);
10834 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
10835 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
10836 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10837 __Pyx_XDECREF_SET(__pyx_v_block_reader, __pyx_t_4);
10838 __pyx_t_4 = 0;
10839
10840 /* "bx/bbi/bbi_file.pyx":326
10841 * # Create another reader just for the block, shouldn't be too expensive
10842 * block_reader = BinaryFileReader( BytesIO( block_data ), is_little_endian=reader.is_little_endian )
10843 * for i from 0 <= i < item_count: # <<<<<<<<<<<<<<
10844 * ## NOTE: Look carefully at bbiRead again to be sure the endian
10845 * ## conversion here is all correct. It looks like it is
10846 */
10847 __pyx_t_14 = __Pyx_PyInt_As_long(__pyx_v_item_count); if (unlikely((__pyx_t_14 == (long)-1) && PyErr_Occurred())) __PYX_ERR(0, 326, __pyx_L1_error)
10848 for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_14; __pyx_v_i++) {
10849
10850 /* "bx/bbi/bbi_file.pyx":331
10851 * ## just pushing raw data into memory and not swapping
10852 *
10853 * sum_chrom_id = block_reader.read_uint32() # <<<<<<<<<<<<<<
10854 * # A block can contain summaries from more that one chrom_id
10855 * if sum_chrom_id != chrom_id:
10856 */
10857 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_block_reader, __pyx_n_s_read_uint32); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 331, __pyx_L1_error)
10858 __Pyx_GOTREF(__pyx_t_1);
10859 __pyx_t_5 = NULL;
10860 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_1))) {
10861 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_1);
10862 if (likely(__pyx_t_5)) {
10863 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
10864 __Pyx_INCREF(__pyx_t_5);
10865 __Pyx_INCREF(function);
10866 __Pyx_DECREF_SET(__pyx_t_1, function);
10867 }
10868 }
10869 __pyx_t_4 = (__pyx_t_5) ? __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_t_5) : __Pyx_PyObject_CallNoArg(__pyx_t_1);
10870 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
10871 if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 331, __pyx_L1_error)
10872 __Pyx_GOTREF(__pyx_t_4);
10873 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10874 __Pyx_XDECREF_SET(__pyx_v_sum_chrom_id, __pyx_t_4);
10875 __pyx_t_4 = 0;
10876
10877 /* "bx/bbi/bbi_file.pyx":333
10878 * sum_chrom_id = block_reader.read_uint32()
10879 * # A block can contain summaries from more that one chrom_id
10880 * if sum_chrom_id != chrom_id: # <<<<<<<<<<<<<<
10881 * block_reader.skip(7*4)
10882 * continue
10883 */
10884 __pyx_t_4 = __Pyx_PyInt_From_unsigned_int(__pyx_v_chrom_id); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 333, __pyx_L1_error)
10885 __Pyx_GOTREF(__pyx_t_4);
10886 __pyx_t_1 = PyObject_RichCompare(__pyx_v_sum_chrom_id, __pyx_t_4, Py_NE); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 333, __pyx_L1_error)
10887 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
10888 __pyx_t_12 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_12 < 0)) __PYX_ERR(0, 333, __pyx_L1_error)
10889 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10890 if (__pyx_t_12) {
10891
10892 /* "bx/bbi/bbi_file.pyx":334
10893 * # A block can contain summaries from more that one chrom_id
10894 * if sum_chrom_id != chrom_id:
10895 * block_reader.skip(7*4) # <<<<<<<<<<<<<<
10896 * continue
10897 *
10898 */
10899 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_block_reader, __pyx_n_s_skip); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 334, __pyx_L1_error)
10900 __Pyx_GOTREF(__pyx_t_4);
10901 __pyx_t_5 = NULL;
10902 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
10903 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
10904 if (likely(__pyx_t_5)) {
10905 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
10906 __Pyx_INCREF(__pyx_t_5);
10907 __Pyx_INCREF(function);
10908 __Pyx_DECREF_SET(__pyx_t_4, function);
10909 }
10910 }
10911 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_4, __pyx_t_5, __pyx_int_28) : __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_int_28);
10912 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
10913 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 334, __pyx_L1_error)
10914 __Pyx_GOTREF(__pyx_t_1);
10915 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
10916 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10917
10918 /* "bx/bbi/bbi_file.pyx":335
10919 * if sum_chrom_id != chrom_id:
10920 * block_reader.skip(7*4)
10921 * continue # <<<<<<<<<<<<<<
10922 *
10923 * summary = SummaryBlock()
10924 */
10925 goto __pyx_L8_continue;
10926
10927 /* "bx/bbi/bbi_file.pyx":333
10928 * sum_chrom_id = block_reader.read_uint32()
10929 * # A block can contain summaries from more that one chrom_id
10930 * if sum_chrom_id != chrom_id: # <<<<<<<<<<<<<<
10931 * block_reader.skip(7*4)
10932 * continue
10933 */
10934 }
10935
10936 /* "bx/bbi/bbi_file.pyx":337
10937 * continue
10938 *
10939 * summary = SummaryBlock() # <<<<<<<<<<<<<<
10940 * summary.chrom_id = sum_chrom_id
10941 * summary.start = block_reader.read_uint32()
10942 */
10943 __pyx_t_1 = __Pyx_PyObject_CallNoArg(((PyObject *)__pyx_ptype_2bx_3bbi_8bbi_file_SummaryBlock)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 337, __pyx_L1_error)
10944 __Pyx_GOTREF(__pyx_t_1);
10945 __Pyx_XDECREF_SET(__pyx_v_summary, ((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_t_1));
10946 __pyx_t_1 = 0;
10947
10948 /* "bx/bbi/bbi_file.pyx":338
10949 *
10950 * summary = SummaryBlock()
10951 * summary.chrom_id = sum_chrom_id # <<<<<<<<<<<<<<
10952 * summary.start = block_reader.read_uint32()
10953 * summary.end = block_reader.read_uint32()
10954 */
10955 __pyx_t_15 = __Pyx_PyInt_As_unsigned_int(__pyx_v_sum_chrom_id); if (unlikely((__pyx_t_15 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 338, __pyx_L1_error)
10956 __pyx_v_summary->chrom_id = __pyx_t_15;
10957
10958 /* "bx/bbi/bbi_file.pyx":339
10959 * summary = SummaryBlock()
10960 * summary.chrom_id = sum_chrom_id
10961 * summary.start = block_reader.read_uint32() # <<<<<<<<<<<<<<
10962 * summary.end = block_reader.read_uint32()
10963 * summary.valid_count = block_reader.read_uint32()
10964 */
10965 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_block_reader, __pyx_n_s_read_uint32); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 339, __pyx_L1_error)
10966 __Pyx_GOTREF(__pyx_t_4);
10967 __pyx_t_5 = NULL;
10968 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
10969 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
10970 if (likely(__pyx_t_5)) {
10971 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
10972 __Pyx_INCREF(__pyx_t_5);
10973 __Pyx_INCREF(function);
10974 __Pyx_DECREF_SET(__pyx_t_4, function);
10975 }
10976 }
10977 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_5) : __Pyx_PyObject_CallNoArg(__pyx_t_4);
10978 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
10979 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 339, __pyx_L1_error)
10980 __Pyx_GOTREF(__pyx_t_1);
10981 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
10982 __pyx_t_15 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_15 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 339, __pyx_L1_error)
10983 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10984 __pyx_v_summary->start = __pyx_t_15;
10985
10986 /* "bx/bbi/bbi_file.pyx":340
10987 * summary.chrom_id = sum_chrom_id
10988 * summary.start = block_reader.read_uint32()
10989 * summary.end = block_reader.read_uint32() # <<<<<<<<<<<<<<
10990 * summary.valid_count = block_reader.read_uint32()
10991 * summary.min_val = block_reader.read_float()
10992 */
10993 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_block_reader, __pyx_n_s_read_uint32); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 340, __pyx_L1_error)
10994 __Pyx_GOTREF(__pyx_t_4);
10995 __pyx_t_5 = NULL;
10996 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
10997 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
10998 if (likely(__pyx_t_5)) {
10999 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
11000 __Pyx_INCREF(__pyx_t_5);
11001 __Pyx_INCREF(function);
11002 __Pyx_DECREF_SET(__pyx_t_4, function);
11003 }
11004 }
11005 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_5) : __Pyx_PyObject_CallNoArg(__pyx_t_4);
11006 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
11007 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 340, __pyx_L1_error)
11008 __Pyx_GOTREF(__pyx_t_1);
11009 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
11010 __pyx_t_15 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_15 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 340, __pyx_L1_error)
11011 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11012 __pyx_v_summary->end = __pyx_t_15;
11013
11014 /* "bx/bbi/bbi_file.pyx":341
11015 * summary.start = block_reader.read_uint32()
11016 * summary.end = block_reader.read_uint32()
11017 * summary.valid_count = block_reader.read_uint32() # <<<<<<<<<<<<<<
11018 * summary.min_val = block_reader.read_float()
11019 * summary.max_val = block_reader.read_float()
11020 */
11021 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_block_reader, __pyx_n_s_read_uint32); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 341, __pyx_L1_error)
11022 __Pyx_GOTREF(__pyx_t_4);
11023 __pyx_t_5 = NULL;
11024 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
11025 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
11026 if (likely(__pyx_t_5)) {
11027 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
11028 __Pyx_INCREF(__pyx_t_5);
11029 __Pyx_INCREF(function);
11030 __Pyx_DECREF_SET(__pyx_t_4, function);
11031 }
11032 }
11033 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_5) : __Pyx_PyObject_CallNoArg(__pyx_t_4);
11034 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
11035 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 341, __pyx_L1_error)
11036 __Pyx_GOTREF(__pyx_t_1);
11037 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
11038 __pyx_t_15 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_15 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 341, __pyx_L1_error)
11039 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11040 __pyx_v_summary->valid_count = __pyx_t_15;
11041
11042 /* "bx/bbi/bbi_file.pyx":342
11043 * summary.end = block_reader.read_uint32()
11044 * summary.valid_count = block_reader.read_uint32()
11045 * summary.min_val = block_reader.read_float() # <<<<<<<<<<<<<<
11046 * summary.max_val = block_reader.read_float()
11047 * summary.sum_data = block_reader.read_float()
11048 */
11049 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_block_reader, __pyx_n_s_read_float); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 342, __pyx_L1_error)
11050 __Pyx_GOTREF(__pyx_t_4);
11051 __pyx_t_5 = NULL;
11052 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
11053 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
11054 if (likely(__pyx_t_5)) {
11055 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
11056 __Pyx_INCREF(__pyx_t_5);
11057 __Pyx_INCREF(function);
11058 __Pyx_DECREF_SET(__pyx_t_4, function);
11059 }
11060 }
11061 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_5) : __Pyx_PyObject_CallNoArg(__pyx_t_4);
11062 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
11063 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 342, __pyx_L1_error)
11064 __Pyx_GOTREF(__pyx_t_1);
11065 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
11066 __pyx_t_16 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_16 == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 342, __pyx_L1_error)
11067 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11068 __pyx_v_summary->min_val = __pyx_t_16;
11069
11070 /* "bx/bbi/bbi_file.pyx":343
11071 * summary.valid_count = block_reader.read_uint32()
11072 * summary.min_val = block_reader.read_float()
11073 * summary.max_val = block_reader.read_float() # <<<<<<<<<<<<<<
11074 * summary.sum_data = block_reader.read_float()
11075 * summary.sum_squares = block_reader.read_float()
11076 */
11077 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_block_reader, __pyx_n_s_read_float); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 343, __pyx_L1_error)
11078 __Pyx_GOTREF(__pyx_t_4);
11079 __pyx_t_5 = NULL;
11080 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
11081 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
11082 if (likely(__pyx_t_5)) {
11083 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
11084 __Pyx_INCREF(__pyx_t_5);
11085 __Pyx_INCREF(function);
11086 __Pyx_DECREF_SET(__pyx_t_4, function);
11087 }
11088 }
11089 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_5) : __Pyx_PyObject_CallNoArg(__pyx_t_4);
11090 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
11091 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 343, __pyx_L1_error)
11092 __Pyx_GOTREF(__pyx_t_1);
11093 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
11094 __pyx_t_16 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_16 == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 343, __pyx_L1_error)
11095 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11096 __pyx_v_summary->max_val = __pyx_t_16;
11097
11098 /* "bx/bbi/bbi_file.pyx":344
11099 * summary.min_val = block_reader.read_float()
11100 * summary.max_val = block_reader.read_float()
11101 * summary.sum_data = block_reader.read_float() # <<<<<<<<<<<<<<
11102 * summary.sum_squares = block_reader.read_float()
11103 * rval.append( summary )
11104 */
11105 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_block_reader, __pyx_n_s_read_float); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 344, __pyx_L1_error)
11106 __Pyx_GOTREF(__pyx_t_4);
11107 __pyx_t_5 = NULL;
11108 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
11109 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
11110 if (likely(__pyx_t_5)) {
11111 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
11112 __Pyx_INCREF(__pyx_t_5);
11113 __Pyx_INCREF(function);
11114 __Pyx_DECREF_SET(__pyx_t_4, function);
11115 }
11116 }
11117 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_5) : __Pyx_PyObject_CallNoArg(__pyx_t_4);
11118 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
11119 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 344, __pyx_L1_error)
11120 __Pyx_GOTREF(__pyx_t_1);
11121 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
11122 __pyx_t_16 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_16 == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 344, __pyx_L1_error)
11123 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11124 __pyx_v_summary->sum_data = __pyx_t_16;
11125
11126 /* "bx/bbi/bbi_file.pyx":345
11127 * summary.max_val = block_reader.read_float()
11128 * summary.sum_data = block_reader.read_float()
11129 * summary.sum_squares = block_reader.read_float() # <<<<<<<<<<<<<<
11130 * rval.append( summary )
11131 *
11132 */
11133 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_block_reader, __pyx_n_s_read_float); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 345, __pyx_L1_error)
11134 __Pyx_GOTREF(__pyx_t_4);
11135 __pyx_t_5 = NULL;
11136 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
11137 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
11138 if (likely(__pyx_t_5)) {
11139 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
11140 __Pyx_INCREF(__pyx_t_5);
11141 __Pyx_INCREF(function);
11142 __Pyx_DECREF_SET(__pyx_t_4, function);
11143 }
11144 }
11145 __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_5) : __Pyx_PyObject_CallNoArg(__pyx_t_4);
11146 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
11147 if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 345, __pyx_L1_error)
11148 __Pyx_GOTREF(__pyx_t_1);
11149 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
11150 __pyx_t_16 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_16 == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 345, __pyx_L1_error)
11151 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11152 __pyx_v_summary->sum_squares = __pyx_t_16;
11153
11154 /* "bx/bbi/bbi_file.pyx":346
11155 * summary.sum_data = block_reader.read_float()
11156 * summary.sum_squares = block_reader.read_float()
11157 * rval.append( summary ) # <<<<<<<<<<<<<<
11158 *
11159 *
11160 */
11161 __pyx_t_17 = __Pyx_PyObject_Append(__pyx_v_rval, ((PyObject *)__pyx_v_summary)); if (unlikely(__pyx_t_17 == ((int)-1))) __PYX_ERR(0, 346, __pyx_L1_error)
11162 __pyx_L8_continue:;
11163 }
11164
11165 /* "bx/bbi/bbi_file.pyx":312
11166 * ctf = CIRTreeFile( reader.file )
11167 * block_list = ctf.find_overlapping_blocks( chrom_id, start, end )
11168 * for offset, size in block_list: # <<<<<<<<<<<<<<
11169 * # Seek to and read all data for the block
11170 * reader.seek( offset )
11171 */
11172 }
11173 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11174
11175 /* "bx/bbi/bbi_file.pyx":349
11176 *
11177 *
11178 * return rval # <<<<<<<<<<<<<<
11179 *
11180 * cdef _get_summary_slice( self, bits32 base_start, bits32 base_end, summaries ):
11181 */
11182 __Pyx_XDECREF(__pyx_r);
11183 __Pyx_INCREF(__pyx_v_rval);
11184 __pyx_r = __pyx_v_rval;
11185 goto __pyx_L0;
11186
11187 /* "bx/bbi/bbi_file.pyx":300
11188 * cdef int item_count
11189 *
11190 * def _summary_blocks_in_region( self, bits32 chrom_id, bits32 start, bits32 end ): # <<<<<<<<<<<<<<
11191 * """
11192 * Return a list of all SummaryBlocks that overlap the region
11193 */
11194
11195 /* function exit code */
11196 __pyx_L1_error:;
11197 __Pyx_XDECREF(__pyx_t_1);
11198 __Pyx_XDECREF(__pyx_t_2);
11199 __Pyx_XDECREF(__pyx_t_3);
11200 __Pyx_XDECREF(__pyx_t_4);
11201 __Pyx_XDECREF(__pyx_t_5);
11202 __Pyx_XDECREF(__pyx_t_6);
11203 __Pyx_XDECREF(__pyx_t_8);
11204 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel._summary_blocks_in_region", __pyx_clineno, __pyx_lineno, __pyx_filename);
11205 __pyx_r = NULL;
11206 __pyx_L0:;
11207 __Pyx_XDECREF((PyObject *)__pyx_v_ctf);
11208 __Pyx_XDECREF((PyObject *)__pyx_v_summary);
11209 __Pyx_XDECREF(__pyx_v_rval);
11210 __Pyx_XDECREF(__pyx_v_reader);
11211 __Pyx_XDECREF(__pyx_v_block_list);
11212 __Pyx_XDECREF(__pyx_v_offset);
11213 __Pyx_XDECREF(__pyx_v_size);
11214 __Pyx_XDECREF(__pyx_v_block_data);
11215 __Pyx_XDECREF(__pyx_v_block_size);
11216 __Pyx_XDECREF(__pyx_v_item_count);
11217 __Pyx_XDECREF(__pyx_v_block_reader);
11218 __Pyx_XDECREF(__pyx_v_sum_chrom_id);
11219 __Pyx_XGIVEREF(__pyx_r);
11220 __Pyx_RefNannyFinishContext();
11221 return __pyx_r;
11222 }
11223
11224 /* "bx/bbi/bbi_file.pyx":351
11225 * return rval
11226 *
11227 * cdef _get_summary_slice( self, bits32 base_start, bits32 base_end, summaries ): # <<<<<<<<<<<<<<
11228 * cdef float valid_count = 0.0
11229 * cdef float sum_data = 0.0
11230 */
11231
__pyx_f_2bx_3bbi_8bbi_file_9ZoomLevel__get_summary_slice(CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_end,PyObject * __pyx_v_summaries)11232 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_9ZoomLevel__get_summary_slice(CYTHON_UNUSED struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_end, PyObject *__pyx_v_summaries) {
11233 float __pyx_v_valid_count;
11234 float __pyx_v_sum_data;
11235 float __pyx_v_sum_squares;
11236 float __pyx_v_min_val;
11237 float __pyx_v_max_val;
11238 float __pyx_v_overlap_factor;
11239 int __pyx_v_overlap;
11240 PyObject *__pyx_v_summary = NULL;
11241 PyObject *__pyx_r = NULL;
11242 __Pyx_RefNannyDeclarations
11243 PyObject *__pyx_t_1 = NULL;
11244 PyObject *__pyx_t_2 = NULL;
11245 float __pyx_t_3;
11246 int __pyx_t_4;
11247 Py_ssize_t __pyx_t_5;
11248 PyObject *(*__pyx_t_6)(PyObject *);
11249 PyObject *__pyx_t_7 = NULL;
11250 PyObject *__pyx_t_8 = NULL;
11251 int __pyx_t_9;
11252 int __pyx_t_10;
11253 PyObject *__pyx_t_11 = NULL;
11254 PyObject *__pyx_t_12 = NULL;
11255 int __pyx_lineno = 0;
11256 const char *__pyx_filename = NULL;
11257 int __pyx_clineno = 0;
11258 __Pyx_RefNannySetupContext("_get_summary_slice", 0);
11259
11260 /* "bx/bbi/bbi_file.pyx":352
11261 *
11262 * cdef _get_summary_slice( self, bits32 base_start, bits32 base_end, summaries ):
11263 * cdef float valid_count = 0.0 # <<<<<<<<<<<<<<
11264 * cdef float sum_data = 0.0
11265 * cdef float sum_squares = 0.0
11266 */
11267 __pyx_v_valid_count = 0.0;
11268
11269 /* "bx/bbi/bbi_file.pyx":353
11270 * cdef _get_summary_slice( self, bits32 base_start, bits32 base_end, summaries ):
11271 * cdef float valid_count = 0.0
11272 * cdef float sum_data = 0.0 # <<<<<<<<<<<<<<
11273 * cdef float sum_squares = 0.0
11274 * cdef float min_val = numpy.nan
11275 */
11276 __pyx_v_sum_data = 0.0;
11277
11278 /* "bx/bbi/bbi_file.pyx":354
11279 * cdef float valid_count = 0.0
11280 * cdef float sum_data = 0.0
11281 * cdef float sum_squares = 0.0 # <<<<<<<<<<<<<<
11282 * cdef float min_val = numpy.nan
11283 * cdef float max_val = numpy.nan
11284 */
11285 __pyx_v_sum_squares = 0.0;
11286
11287 /* "bx/bbi/bbi_file.pyx":355
11288 * cdef float sum_data = 0.0
11289 * cdef float sum_squares = 0.0
11290 * cdef float min_val = numpy.nan # <<<<<<<<<<<<<<
11291 * cdef float max_val = numpy.nan
11292 * cdef float overlap_factor
11293 */
11294 __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_numpy); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 355, __pyx_L1_error)
11295 __Pyx_GOTREF(__pyx_t_1);
11296 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_nan); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 355, __pyx_L1_error)
11297 __Pyx_GOTREF(__pyx_t_2);
11298 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11299 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_2); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 355, __pyx_L1_error)
11300 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11301 __pyx_v_min_val = __pyx_t_3;
11302
11303 /* "bx/bbi/bbi_file.pyx":356
11304 * cdef float sum_squares = 0.0
11305 * cdef float min_val = numpy.nan
11306 * cdef float max_val = numpy.nan # <<<<<<<<<<<<<<
11307 * cdef float overlap_factor
11308 * cdef int overlap
11309 */
11310 __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_numpy); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 356, __pyx_L1_error)
11311 __Pyx_GOTREF(__pyx_t_2);
11312 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_nan); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 356, __pyx_L1_error)
11313 __Pyx_GOTREF(__pyx_t_1);
11314 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11315 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_1); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 356, __pyx_L1_error)
11316 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11317 __pyx_v_max_val = __pyx_t_3;
11318
11319 /* "bx/bbi/bbi_file.pyx":360
11320 * cdef int overlap
11321 *
11322 * if summaries: # <<<<<<<<<<<<<<
11323 *
11324 * min_val = summaries[0].min_val
11325 */
11326 __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_v_summaries); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(0, 360, __pyx_L1_error)
11327 if (__pyx_t_4) {
11328
11329 /* "bx/bbi/bbi_file.pyx":362
11330 * if summaries:
11331 *
11332 * min_val = summaries[0].min_val # <<<<<<<<<<<<<<
11333 * max_val = summaries[0].max_val
11334 *
11335 */
11336 __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_summaries, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 362, __pyx_L1_error)
11337 __Pyx_GOTREF(__pyx_t_1);
11338 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_min_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 362, __pyx_L1_error)
11339 __Pyx_GOTREF(__pyx_t_2);
11340 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11341 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_2); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 362, __pyx_L1_error)
11342 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11343 __pyx_v_min_val = __pyx_t_3;
11344
11345 /* "bx/bbi/bbi_file.pyx":363
11346 *
11347 * min_val = summaries[0].min_val
11348 * max_val = summaries[0].max_val # <<<<<<<<<<<<<<
11349 *
11350 * for summary in summaries:
11351 */
11352 __pyx_t_2 = __Pyx_GetItemInt(__pyx_v_summaries, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 363, __pyx_L1_error)
11353 __Pyx_GOTREF(__pyx_t_2);
11354 __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_max_val); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 363, __pyx_L1_error)
11355 __Pyx_GOTREF(__pyx_t_1);
11356 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11357 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_1); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 363, __pyx_L1_error)
11358 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11359 __pyx_v_max_val = __pyx_t_3;
11360
11361 /* "bx/bbi/bbi_file.pyx":365
11362 * max_val = summaries[0].max_val
11363 *
11364 * for summary in summaries: # <<<<<<<<<<<<<<
11365 * if summary.start >= base_end:
11366 * break
11367 */
11368 if (likely(PyList_CheckExact(__pyx_v_summaries)) || PyTuple_CheckExact(__pyx_v_summaries)) {
11369 __pyx_t_1 = __pyx_v_summaries; __Pyx_INCREF(__pyx_t_1); __pyx_t_5 = 0;
11370 __pyx_t_6 = NULL;
11371 } else {
11372 __pyx_t_5 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_v_summaries); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 365, __pyx_L1_error)
11373 __Pyx_GOTREF(__pyx_t_1);
11374 __pyx_t_6 = Py_TYPE(__pyx_t_1)->tp_iternext; if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 365, __pyx_L1_error)
11375 }
11376 for (;;) {
11377 if (likely(!__pyx_t_6)) {
11378 if (likely(PyList_CheckExact(__pyx_t_1))) {
11379 if (__pyx_t_5 >= PyList_GET_SIZE(__pyx_t_1)) break;
11380 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
11381 __pyx_t_2 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_5); __Pyx_INCREF(__pyx_t_2); __pyx_t_5++; if (unlikely(0 < 0)) __PYX_ERR(0, 365, __pyx_L1_error)
11382 #else
11383 __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 365, __pyx_L1_error)
11384 __Pyx_GOTREF(__pyx_t_2);
11385 #endif
11386 } else {
11387 if (__pyx_t_5 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
11388 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
11389 __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_5); __Pyx_INCREF(__pyx_t_2); __pyx_t_5++; if (unlikely(0 < 0)) __PYX_ERR(0, 365, __pyx_L1_error)
11390 #else
11391 __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 365, __pyx_L1_error)
11392 __Pyx_GOTREF(__pyx_t_2);
11393 #endif
11394 }
11395 } else {
11396 __pyx_t_2 = __pyx_t_6(__pyx_t_1);
11397 if (unlikely(!__pyx_t_2)) {
11398 PyObject* exc_type = PyErr_Occurred();
11399 if (exc_type) {
11400 if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
11401 else __PYX_ERR(0, 365, __pyx_L1_error)
11402 }
11403 break;
11404 }
11405 __Pyx_GOTREF(__pyx_t_2);
11406 }
11407 __Pyx_XDECREF_SET(__pyx_v_summary, __pyx_t_2);
11408 __pyx_t_2 = 0;
11409
11410 /* "bx/bbi/bbi_file.pyx":366
11411 *
11412 * for summary in summaries:
11413 * if summary.start >= base_end: # <<<<<<<<<<<<<<
11414 * break
11415 *
11416 */
11417 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_start); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 366, __pyx_L1_error)
11418 __Pyx_GOTREF(__pyx_t_2);
11419 __pyx_t_7 = __Pyx_PyInt_From_unsigned_int(__pyx_v_base_end); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 366, __pyx_L1_error)
11420 __Pyx_GOTREF(__pyx_t_7);
11421 __pyx_t_8 = PyObject_RichCompare(__pyx_t_2, __pyx_t_7, Py_GE); __Pyx_XGOTREF(__pyx_t_8); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 366, __pyx_L1_error)
11422 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11423 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
11424 __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_8); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(0, 366, __pyx_L1_error)
11425 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11426 if (__pyx_t_4) {
11427
11428 /* "bx/bbi/bbi_file.pyx":367
11429 * for summary in summaries:
11430 * if summary.start >= base_end:
11431 * break # <<<<<<<<<<<<<<
11432 *
11433 * overlap = range_intersection( base_start, base_end, summary.start, summary.end )
11434 */
11435 goto __pyx_L5_break;
11436
11437 /* "bx/bbi/bbi_file.pyx":366
11438 *
11439 * for summary in summaries:
11440 * if summary.start >= base_end: # <<<<<<<<<<<<<<
11441 * break
11442 *
11443 */
11444 }
11445
11446 /* "bx/bbi/bbi_file.pyx":369
11447 * break
11448 *
11449 * overlap = range_intersection( base_start, base_end, summary.start, summary.end ) # <<<<<<<<<<<<<<
11450 * if overlap > 0:
11451 * overlap_factor = <double> overlap / (summary.end - summary.start)
11452 */
11453 __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_start); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 369, __pyx_L1_error)
11454 __Pyx_GOTREF(__pyx_t_8);
11455 __pyx_t_9 = __Pyx_PyInt_As_int(__pyx_t_8); if (unlikely((__pyx_t_9 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 369, __pyx_L1_error)
11456 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11457 __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_end); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 369, __pyx_L1_error)
11458 __Pyx_GOTREF(__pyx_t_8);
11459 __pyx_t_10 = __Pyx_PyInt_As_int(__pyx_t_8); if (unlikely((__pyx_t_10 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 369, __pyx_L1_error)
11460 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11461 __pyx_v_overlap = __pyx_f_2bx_3bbi_8bbi_file_range_intersection(__pyx_v_base_start, __pyx_v_base_end, __pyx_t_9, __pyx_t_10);
11462
11463 /* "bx/bbi/bbi_file.pyx":370
11464 *
11465 * overlap = range_intersection( base_start, base_end, summary.start, summary.end )
11466 * if overlap > 0: # <<<<<<<<<<<<<<
11467 * overlap_factor = <double> overlap / (summary.end - summary.start)
11468 *
11469 */
11470 __pyx_t_4 = ((__pyx_v_overlap > 0) != 0);
11471 if (__pyx_t_4) {
11472
11473 /* "bx/bbi/bbi_file.pyx":371
11474 * overlap = range_intersection( base_start, base_end, summary.start, summary.end )
11475 * if overlap > 0:
11476 * overlap_factor = <double> overlap / (summary.end - summary.start) # <<<<<<<<<<<<<<
11477 *
11478 * valid_count += summary.valid_count * overlap_factor
11479 */
11480 __pyx_t_8 = PyFloat_FromDouble(((double)__pyx_v_overlap)); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 371, __pyx_L1_error)
11481 __Pyx_GOTREF(__pyx_t_8);
11482 __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_end); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 371, __pyx_L1_error)
11483 __Pyx_GOTREF(__pyx_t_7);
11484 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_start); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 371, __pyx_L1_error)
11485 __Pyx_GOTREF(__pyx_t_2);
11486 __pyx_t_11 = PyNumber_Subtract(__pyx_t_7, __pyx_t_2); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 371, __pyx_L1_error)
11487 __Pyx_GOTREF(__pyx_t_11);
11488 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
11489 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11490 __pyx_t_2 = __Pyx_PyNumber_Divide(__pyx_t_8, __pyx_t_11); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 371, __pyx_L1_error)
11491 __Pyx_GOTREF(__pyx_t_2);
11492 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11493 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
11494 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_2); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 371, __pyx_L1_error)
11495 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11496 __pyx_v_overlap_factor = __pyx_t_3;
11497
11498 /* "bx/bbi/bbi_file.pyx":373
11499 * overlap_factor = <double> overlap / (summary.end - summary.start)
11500 *
11501 * valid_count += summary.valid_count * overlap_factor # <<<<<<<<<<<<<<
11502 * sum_data += summary.sum_data * overlap_factor
11503 * sum_squares += summary.sum_squares * overlap_factor
11504 */
11505 __pyx_t_2 = PyFloat_FromDouble(__pyx_v_valid_count); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 373, __pyx_L1_error)
11506 __Pyx_GOTREF(__pyx_t_2);
11507 __pyx_t_11 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_valid_count); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 373, __pyx_L1_error)
11508 __Pyx_GOTREF(__pyx_t_11);
11509 __pyx_t_8 = PyFloat_FromDouble(__pyx_v_overlap_factor); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 373, __pyx_L1_error)
11510 __Pyx_GOTREF(__pyx_t_8);
11511 __pyx_t_7 = PyNumber_Multiply(__pyx_t_11, __pyx_t_8); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 373, __pyx_L1_error)
11512 __Pyx_GOTREF(__pyx_t_7);
11513 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
11514 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11515 __pyx_t_8 = PyNumber_InPlaceAdd(__pyx_t_2, __pyx_t_7); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 373, __pyx_L1_error)
11516 __Pyx_GOTREF(__pyx_t_8);
11517 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11518 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
11519 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_8); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 373, __pyx_L1_error)
11520 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11521 __pyx_v_valid_count = __pyx_t_3;
11522
11523 /* "bx/bbi/bbi_file.pyx":374
11524 *
11525 * valid_count += summary.valid_count * overlap_factor
11526 * sum_data += summary.sum_data * overlap_factor # <<<<<<<<<<<<<<
11527 * sum_squares += summary.sum_squares * overlap_factor
11528 *
11529 */
11530 __pyx_t_8 = PyFloat_FromDouble(__pyx_v_sum_data); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 374, __pyx_L1_error)
11531 __Pyx_GOTREF(__pyx_t_8);
11532 __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_sum_data); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 374, __pyx_L1_error)
11533 __Pyx_GOTREF(__pyx_t_7);
11534 __pyx_t_2 = PyFloat_FromDouble(__pyx_v_overlap_factor); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 374, __pyx_L1_error)
11535 __Pyx_GOTREF(__pyx_t_2);
11536 __pyx_t_11 = PyNumber_Multiply(__pyx_t_7, __pyx_t_2); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 374, __pyx_L1_error)
11537 __Pyx_GOTREF(__pyx_t_11);
11538 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
11539 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11540 __pyx_t_2 = PyNumber_InPlaceAdd(__pyx_t_8, __pyx_t_11); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 374, __pyx_L1_error)
11541 __Pyx_GOTREF(__pyx_t_2);
11542 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11543 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
11544 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_2); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 374, __pyx_L1_error)
11545 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11546 __pyx_v_sum_data = __pyx_t_3;
11547
11548 /* "bx/bbi/bbi_file.pyx":375
11549 * valid_count += summary.valid_count * overlap_factor
11550 * sum_data += summary.sum_data * overlap_factor
11551 * sum_squares += summary.sum_squares * overlap_factor # <<<<<<<<<<<<<<
11552 *
11553 * if max_val < summary.max_val:
11554 */
11555 __pyx_t_2 = PyFloat_FromDouble(__pyx_v_sum_squares); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 375, __pyx_L1_error)
11556 __Pyx_GOTREF(__pyx_t_2);
11557 __pyx_t_11 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_sum_squares); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 375, __pyx_L1_error)
11558 __Pyx_GOTREF(__pyx_t_11);
11559 __pyx_t_8 = PyFloat_FromDouble(__pyx_v_overlap_factor); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 375, __pyx_L1_error)
11560 __Pyx_GOTREF(__pyx_t_8);
11561 __pyx_t_7 = PyNumber_Multiply(__pyx_t_11, __pyx_t_8); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 375, __pyx_L1_error)
11562 __Pyx_GOTREF(__pyx_t_7);
11563 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
11564 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11565 __pyx_t_8 = PyNumber_InPlaceAdd(__pyx_t_2, __pyx_t_7); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 375, __pyx_L1_error)
11566 __Pyx_GOTREF(__pyx_t_8);
11567 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11568 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
11569 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_8); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 375, __pyx_L1_error)
11570 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11571 __pyx_v_sum_squares = __pyx_t_3;
11572
11573 /* "bx/bbi/bbi_file.pyx":377
11574 * sum_squares += summary.sum_squares * overlap_factor
11575 *
11576 * if max_val < summary.max_val: # <<<<<<<<<<<<<<
11577 * max_val = summary.max_val
11578 * if min_val > summary.min_val:
11579 */
11580 __pyx_t_8 = PyFloat_FromDouble(__pyx_v_max_val); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 377, __pyx_L1_error)
11581 __Pyx_GOTREF(__pyx_t_8);
11582 __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_max_val); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 377, __pyx_L1_error)
11583 __Pyx_GOTREF(__pyx_t_7);
11584 __pyx_t_2 = PyObject_RichCompare(__pyx_t_8, __pyx_t_7, Py_LT); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 377, __pyx_L1_error)
11585 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11586 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
11587 __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(0, 377, __pyx_L1_error)
11588 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11589 if (__pyx_t_4) {
11590
11591 /* "bx/bbi/bbi_file.pyx":378
11592 *
11593 * if max_val < summary.max_val:
11594 * max_val = summary.max_val # <<<<<<<<<<<<<<
11595 * if min_val > summary.min_val:
11596 * min_val = summary.min_val
11597 */
11598 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_max_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 378, __pyx_L1_error)
11599 __Pyx_GOTREF(__pyx_t_2);
11600 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_2); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 378, __pyx_L1_error)
11601 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11602 __pyx_v_max_val = __pyx_t_3;
11603
11604 /* "bx/bbi/bbi_file.pyx":377
11605 * sum_squares += summary.sum_squares * overlap_factor
11606 *
11607 * if max_val < summary.max_val: # <<<<<<<<<<<<<<
11608 * max_val = summary.max_val
11609 * if min_val > summary.min_val:
11610 */
11611 }
11612
11613 /* "bx/bbi/bbi_file.pyx":379
11614 * if max_val < summary.max_val:
11615 * max_val = summary.max_val
11616 * if min_val > summary.min_val: # <<<<<<<<<<<<<<
11617 * min_val = summary.min_val
11618 *
11619 */
11620 __pyx_t_2 = PyFloat_FromDouble(__pyx_v_min_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 379, __pyx_L1_error)
11621 __Pyx_GOTREF(__pyx_t_2);
11622 __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_min_val); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 379, __pyx_L1_error)
11623 __Pyx_GOTREF(__pyx_t_7);
11624 __pyx_t_8 = PyObject_RichCompare(__pyx_t_2, __pyx_t_7, Py_GT); __Pyx_XGOTREF(__pyx_t_8); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 379, __pyx_L1_error)
11625 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
11626 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
11627 __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_8); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(0, 379, __pyx_L1_error)
11628 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11629 if (__pyx_t_4) {
11630
11631 /* "bx/bbi/bbi_file.pyx":380
11632 * max_val = summary.max_val
11633 * if min_val > summary.min_val:
11634 * min_val = summary.min_val # <<<<<<<<<<<<<<
11635 *
11636 * return valid_count, sum_data, sum_squares, min_val, max_val
11637 */
11638 __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_v_summary, __pyx_n_s_min_val); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 380, __pyx_L1_error)
11639 __Pyx_GOTREF(__pyx_t_8);
11640 __pyx_t_3 = __pyx_PyFloat_AsFloat(__pyx_t_8); if (unlikely((__pyx_t_3 == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 380, __pyx_L1_error)
11641 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
11642 __pyx_v_min_val = __pyx_t_3;
11643
11644 /* "bx/bbi/bbi_file.pyx":379
11645 * if max_val < summary.max_val:
11646 * max_val = summary.max_val
11647 * if min_val > summary.min_val: # <<<<<<<<<<<<<<
11648 * min_val = summary.min_val
11649 *
11650 */
11651 }
11652
11653 /* "bx/bbi/bbi_file.pyx":370
11654 *
11655 * overlap = range_intersection( base_start, base_end, summary.start, summary.end )
11656 * if overlap > 0: # <<<<<<<<<<<<<<
11657 * overlap_factor = <double> overlap / (summary.end - summary.start)
11658 *
11659 */
11660 }
11661
11662 /* "bx/bbi/bbi_file.pyx":365
11663 * max_val = summaries[0].max_val
11664 *
11665 * for summary in summaries: # <<<<<<<<<<<<<<
11666 * if summary.start >= base_end:
11667 * break
11668 */
11669 }
11670 __pyx_L5_break:;
11671 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
11672
11673 /* "bx/bbi/bbi_file.pyx":360
11674 * cdef int overlap
11675 *
11676 * if summaries: # <<<<<<<<<<<<<<
11677 *
11678 * min_val = summaries[0].min_val
11679 */
11680 }
11681
11682 /* "bx/bbi/bbi_file.pyx":382
11683 * min_val = summary.min_val
11684 *
11685 * return valid_count, sum_data, sum_squares, min_val, max_val # <<<<<<<<<<<<<<
11686 *
11687 * cdef _summarize( self, bits32 chrom_id, bits32 start, bits32 end, int summary_size ):
11688 */
11689 __Pyx_XDECREF(__pyx_r);
11690 __pyx_t_1 = PyFloat_FromDouble(__pyx_v_valid_count); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 382, __pyx_L1_error)
11691 __Pyx_GOTREF(__pyx_t_1);
11692 __pyx_t_8 = PyFloat_FromDouble(__pyx_v_sum_data); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 382, __pyx_L1_error)
11693 __Pyx_GOTREF(__pyx_t_8);
11694 __pyx_t_7 = PyFloat_FromDouble(__pyx_v_sum_squares); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 382, __pyx_L1_error)
11695 __Pyx_GOTREF(__pyx_t_7);
11696 __pyx_t_2 = PyFloat_FromDouble(__pyx_v_min_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 382, __pyx_L1_error)
11697 __Pyx_GOTREF(__pyx_t_2);
11698 __pyx_t_11 = PyFloat_FromDouble(__pyx_v_max_val); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 382, __pyx_L1_error)
11699 __Pyx_GOTREF(__pyx_t_11);
11700 __pyx_t_12 = PyTuple_New(5); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 382, __pyx_L1_error)
11701 __Pyx_GOTREF(__pyx_t_12);
11702 __Pyx_GIVEREF(__pyx_t_1);
11703 PyTuple_SET_ITEM(__pyx_t_12, 0, __pyx_t_1);
11704 __Pyx_GIVEREF(__pyx_t_8);
11705 PyTuple_SET_ITEM(__pyx_t_12, 1, __pyx_t_8);
11706 __Pyx_GIVEREF(__pyx_t_7);
11707 PyTuple_SET_ITEM(__pyx_t_12, 2, __pyx_t_7);
11708 __Pyx_GIVEREF(__pyx_t_2);
11709 PyTuple_SET_ITEM(__pyx_t_12, 3, __pyx_t_2);
11710 __Pyx_GIVEREF(__pyx_t_11);
11711 PyTuple_SET_ITEM(__pyx_t_12, 4, __pyx_t_11);
11712 __pyx_t_1 = 0;
11713 __pyx_t_8 = 0;
11714 __pyx_t_7 = 0;
11715 __pyx_t_2 = 0;
11716 __pyx_t_11 = 0;
11717 __pyx_r = __pyx_t_12;
11718 __pyx_t_12 = 0;
11719 goto __pyx_L0;
11720
11721 /* "bx/bbi/bbi_file.pyx":351
11722 * return rval
11723 *
11724 * cdef _get_summary_slice( self, bits32 base_start, bits32 base_end, summaries ): # <<<<<<<<<<<<<<
11725 * cdef float valid_count = 0.0
11726 * cdef float sum_data = 0.0
11727 */
11728
11729 /* function exit code */
11730 __pyx_L1_error:;
11731 __Pyx_XDECREF(__pyx_t_1);
11732 __Pyx_XDECREF(__pyx_t_2);
11733 __Pyx_XDECREF(__pyx_t_7);
11734 __Pyx_XDECREF(__pyx_t_8);
11735 __Pyx_XDECREF(__pyx_t_11);
11736 __Pyx_XDECREF(__pyx_t_12);
11737 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel._get_summary_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
11738 __pyx_r = 0;
11739 __pyx_L0:;
11740 __Pyx_XDECREF(__pyx_v_summary);
11741 __Pyx_XGIVEREF(__pyx_r);
11742 __Pyx_RefNannyFinishContext();
11743 return __pyx_r;
11744 }
11745
11746 /* "bx/bbi/bbi_file.pyx":384
11747 * return valid_count, sum_data, sum_squares, min_val, max_val
11748 *
11749 * cdef _summarize( self, bits32 chrom_id, bits32 start, bits32 end, int summary_size ): # <<<<<<<<<<<<<<
11750 * """
11751 * Summarize directly from file.
11752 */
11753
__pyx_f_2bx_3bbi_8bbi_file_9ZoomLevel__summarize(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start,__pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end,int __pyx_v_summary_size)11754 static PyObject *__pyx_f_2bx_3bbi_8bbi_file_9ZoomLevel__summarize(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_chrom_id, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_start, __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_end, int __pyx_v_summary_size) {
11755 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_start;
11756 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_end;
11757 __pyx_t_2bx_3bbi_5types_bits32 __pyx_v_base_step;
11758 PyArrayObject *__pyx_v_valid_count = 0;
11759 PyArrayObject *__pyx_v_min_val = 0;
11760 PyArrayObject *__pyx_v_max_val = 0;
11761 PyArrayObject *__pyx_v_sum_data = 0;
11762 PyArrayObject *__pyx_v_sum_squares = 0;
11763 struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v_rval = NULL;
11764 PyObject *__pyx_v_reader = NULL;
11765 PyObject *__pyx_v_summaries = NULL;
11766 int __pyx_v_i;
11767 __Pyx_LocalBuf_ND __pyx_pybuffernd_max_val;
11768 __Pyx_Buffer __pyx_pybuffer_max_val;
11769 __Pyx_LocalBuf_ND __pyx_pybuffernd_min_val;
11770 __Pyx_Buffer __pyx_pybuffer_min_val;
11771 __Pyx_LocalBuf_ND __pyx_pybuffernd_sum_data;
11772 __Pyx_Buffer __pyx_pybuffer_sum_data;
11773 __Pyx_LocalBuf_ND __pyx_pybuffernd_sum_squares;
11774 __Pyx_Buffer __pyx_pybuffer_sum_squares;
11775 __Pyx_LocalBuf_ND __pyx_pybuffernd_valid_count;
11776 __Pyx_Buffer __pyx_pybuffer_valid_count;
11777 PyObject *__pyx_r = NULL;
11778 __Pyx_RefNannyDeclarations
11779 PyObject *__pyx_t_1 = NULL;
11780 PyObject *__pyx_t_2 = NULL;
11781 PyObject *__pyx_t_3 = NULL;
11782 PyObject *__pyx_t_4 = NULL;
11783 int __pyx_t_5;
11784 PyObject *__pyx_t_6 = NULL;
11785 PyObject *__pyx_t_7 = NULL;
11786 PyObject *__pyx_t_8 = NULL;
11787 PyObject *__pyx_t_9 = NULL;
11788 PyObject *__pyx_t_10 = NULL;
11789 PyObject *__pyx_t_11 = NULL;
11790 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_12;
11791 int __pyx_t_13;
11792 int __pyx_t_14;
11793 int __pyx_t_15;
11794 int __pyx_t_16;
11795 PyObject *(*__pyx_t_17)(PyObject *);
11796 __pyx_t_5numpy_float64_t __pyx_t_18;
11797 __pyx_t_5numpy_float64_t __pyx_t_19;
11798 __pyx_t_5numpy_float64_t __pyx_t_20;
11799 __pyx_t_5numpy_float64_t __pyx_t_21;
11800 __pyx_t_5numpy_float64_t __pyx_t_22;
11801 Py_ssize_t __pyx_t_23;
11802 int __pyx_t_24;
11803 int __pyx_lineno = 0;
11804 const char *__pyx_filename = NULL;
11805 int __pyx_clineno = 0;
11806 __Pyx_RefNannySetupContext("_summarize", 0);
11807 __pyx_pybuffer_valid_count.pybuffer.buf = NULL;
11808 __pyx_pybuffer_valid_count.refcount = 0;
11809 __pyx_pybuffernd_valid_count.data = NULL;
11810 __pyx_pybuffernd_valid_count.rcbuffer = &__pyx_pybuffer_valid_count;
11811 __pyx_pybuffer_min_val.pybuffer.buf = NULL;
11812 __pyx_pybuffer_min_val.refcount = 0;
11813 __pyx_pybuffernd_min_val.data = NULL;
11814 __pyx_pybuffernd_min_val.rcbuffer = &__pyx_pybuffer_min_val;
11815 __pyx_pybuffer_max_val.pybuffer.buf = NULL;
11816 __pyx_pybuffer_max_val.refcount = 0;
11817 __pyx_pybuffernd_max_val.data = NULL;
11818 __pyx_pybuffernd_max_val.rcbuffer = &__pyx_pybuffer_max_val;
11819 __pyx_pybuffer_sum_data.pybuffer.buf = NULL;
11820 __pyx_pybuffer_sum_data.refcount = 0;
11821 __pyx_pybuffernd_sum_data.data = NULL;
11822 __pyx_pybuffernd_sum_data.rcbuffer = &__pyx_pybuffer_sum_data;
11823 __pyx_pybuffer_sum_squares.pybuffer.buf = NULL;
11824 __pyx_pybuffer_sum_squares.refcount = 0;
11825 __pyx_pybuffernd_sum_squares.data = NULL;
11826 __pyx_pybuffernd_sum_squares.rcbuffer = &__pyx_pybuffer_sum_squares;
11827
11828 /* "bx/bbi/bbi_file.pyx":404
11829 *
11830 * # What we will load into
11831 * rval = SummarizedData( start, end, summary_size ) # <<<<<<<<<<<<<<
11832 * valid_count = rval.valid_count
11833 * min_val = rval.min_val
11834 */
11835 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_start); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 404, __pyx_L1_error)
11836 __Pyx_GOTREF(__pyx_t_1);
11837 __pyx_t_2 = __Pyx_PyInt_From_unsigned_int(__pyx_v_end); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 404, __pyx_L1_error)
11838 __Pyx_GOTREF(__pyx_t_2);
11839 __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_summary_size); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 404, __pyx_L1_error)
11840 __Pyx_GOTREF(__pyx_t_3);
11841 __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 404, __pyx_L1_error)
11842 __Pyx_GOTREF(__pyx_t_4);
11843 __Pyx_GIVEREF(__pyx_t_1);
11844 PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_1);
11845 __Pyx_GIVEREF(__pyx_t_2);
11846 PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_2);
11847 __Pyx_GIVEREF(__pyx_t_3);
11848 PyTuple_SET_ITEM(__pyx_t_4, 2, __pyx_t_3);
11849 __pyx_t_1 = 0;
11850 __pyx_t_2 = 0;
11851 __pyx_t_3 = 0;
11852 __pyx_t_3 = __Pyx_PyObject_Call(((PyObject *)__pyx_ptype_2bx_3bbi_8bbi_file_SummarizedData), __pyx_t_4, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 404, __pyx_L1_error)
11853 __Pyx_GOTREF(__pyx_t_3);
11854 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
11855 __pyx_v_rval = ((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_t_3);
11856 __pyx_t_3 = 0;
11857
11858 /* "bx/bbi/bbi_file.pyx":405
11859 * # What we will load into
11860 * rval = SummarizedData( start, end, summary_size )
11861 * valid_count = rval.valid_count # <<<<<<<<<<<<<<
11862 * min_val = rval.min_val
11863 * max_val = rval.max_val
11864 */
11865 __pyx_t_3 = ((PyObject *)__pyx_v_rval->valid_count);
11866 __Pyx_INCREF(__pyx_t_3);
11867 {
11868 __Pyx_BufFmt_StackElem __pyx_stack[1];
11869 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_valid_count.rcbuffer->pybuffer);
11870 __pyx_t_5 = __Pyx_GetBufferAndValidate(&__pyx_pybuffernd_valid_count.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_3), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack);
11871 if (unlikely(__pyx_t_5 < 0)) {
11872 PyErr_Fetch(&__pyx_t_6, &__pyx_t_7, &__pyx_t_8);
11873 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_valid_count.rcbuffer->pybuffer, (PyObject*)__pyx_v_valid_count, &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
11874 Py_XDECREF(__pyx_t_6); Py_XDECREF(__pyx_t_7); Py_XDECREF(__pyx_t_8);
11875 __Pyx_RaiseBufferFallbackError();
11876 } else {
11877 PyErr_Restore(__pyx_t_6, __pyx_t_7, __pyx_t_8);
11878 }
11879 __pyx_t_6 = __pyx_t_7 = __pyx_t_8 = 0;
11880 }
11881 __pyx_pybuffernd_valid_count.diminfo[0].strides = __pyx_pybuffernd_valid_count.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_valid_count.diminfo[0].shape = __pyx_pybuffernd_valid_count.rcbuffer->pybuffer.shape[0];
11882 if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(0, 405, __pyx_L1_error)
11883 }
11884 __pyx_v_valid_count = ((PyArrayObject *)__pyx_t_3);
11885 __pyx_t_3 = 0;
11886
11887 /* "bx/bbi/bbi_file.pyx":406
11888 * rval = SummarizedData( start, end, summary_size )
11889 * valid_count = rval.valid_count
11890 * min_val = rval.min_val # <<<<<<<<<<<<<<
11891 * max_val = rval.max_val
11892 * sum_data = rval.sum_data
11893 */
11894 __pyx_t_3 = ((PyObject *)__pyx_v_rval->min_val);
11895 __Pyx_INCREF(__pyx_t_3);
11896 {
11897 __Pyx_BufFmt_StackElem __pyx_stack[1];
11898 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_min_val.rcbuffer->pybuffer);
11899 __pyx_t_5 = __Pyx_GetBufferAndValidate(&__pyx_pybuffernd_min_val.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_3), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack);
11900 if (unlikely(__pyx_t_5 < 0)) {
11901 PyErr_Fetch(&__pyx_t_8, &__pyx_t_7, &__pyx_t_6);
11902 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_min_val.rcbuffer->pybuffer, (PyObject*)__pyx_v_min_val, &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
11903 Py_XDECREF(__pyx_t_8); Py_XDECREF(__pyx_t_7); Py_XDECREF(__pyx_t_6);
11904 __Pyx_RaiseBufferFallbackError();
11905 } else {
11906 PyErr_Restore(__pyx_t_8, __pyx_t_7, __pyx_t_6);
11907 }
11908 __pyx_t_8 = __pyx_t_7 = __pyx_t_6 = 0;
11909 }
11910 __pyx_pybuffernd_min_val.diminfo[0].strides = __pyx_pybuffernd_min_val.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_min_val.diminfo[0].shape = __pyx_pybuffernd_min_val.rcbuffer->pybuffer.shape[0];
11911 if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(0, 406, __pyx_L1_error)
11912 }
11913 __pyx_v_min_val = ((PyArrayObject *)__pyx_t_3);
11914 __pyx_t_3 = 0;
11915
11916 /* "bx/bbi/bbi_file.pyx":407
11917 * valid_count = rval.valid_count
11918 * min_val = rval.min_val
11919 * max_val = rval.max_val # <<<<<<<<<<<<<<
11920 * sum_data = rval.sum_data
11921 * sum_squares = rval.sum_squares
11922 */
11923 __pyx_t_3 = ((PyObject *)__pyx_v_rval->max_val);
11924 __Pyx_INCREF(__pyx_t_3);
11925 {
11926 __Pyx_BufFmt_StackElem __pyx_stack[1];
11927 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_max_val.rcbuffer->pybuffer);
11928 __pyx_t_5 = __Pyx_GetBufferAndValidate(&__pyx_pybuffernd_max_val.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_3), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack);
11929 if (unlikely(__pyx_t_5 < 0)) {
11930 PyErr_Fetch(&__pyx_t_6, &__pyx_t_7, &__pyx_t_8);
11931 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_max_val.rcbuffer->pybuffer, (PyObject*)__pyx_v_max_val, &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
11932 Py_XDECREF(__pyx_t_6); Py_XDECREF(__pyx_t_7); Py_XDECREF(__pyx_t_8);
11933 __Pyx_RaiseBufferFallbackError();
11934 } else {
11935 PyErr_Restore(__pyx_t_6, __pyx_t_7, __pyx_t_8);
11936 }
11937 __pyx_t_6 = __pyx_t_7 = __pyx_t_8 = 0;
11938 }
11939 __pyx_pybuffernd_max_val.diminfo[0].strides = __pyx_pybuffernd_max_val.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_max_val.diminfo[0].shape = __pyx_pybuffernd_max_val.rcbuffer->pybuffer.shape[0];
11940 if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(0, 407, __pyx_L1_error)
11941 }
11942 __pyx_v_max_val = ((PyArrayObject *)__pyx_t_3);
11943 __pyx_t_3 = 0;
11944
11945 /* "bx/bbi/bbi_file.pyx":408
11946 * min_val = rval.min_val
11947 * max_val = rval.max_val
11948 * sum_data = rval.sum_data # <<<<<<<<<<<<<<
11949 * sum_squares = rval.sum_squares
11950 * # First, load up summaries
11951 */
11952 __pyx_t_3 = ((PyObject *)__pyx_v_rval->sum_data);
11953 __Pyx_INCREF(__pyx_t_3);
11954 {
11955 __Pyx_BufFmt_StackElem __pyx_stack[1];
11956 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_data.rcbuffer->pybuffer);
11957 __pyx_t_5 = __Pyx_GetBufferAndValidate(&__pyx_pybuffernd_sum_data.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_3), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack);
11958 if (unlikely(__pyx_t_5 < 0)) {
11959 PyErr_Fetch(&__pyx_t_8, &__pyx_t_7, &__pyx_t_6);
11960 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_sum_data.rcbuffer->pybuffer, (PyObject*)__pyx_v_sum_data, &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
11961 Py_XDECREF(__pyx_t_8); Py_XDECREF(__pyx_t_7); Py_XDECREF(__pyx_t_6);
11962 __Pyx_RaiseBufferFallbackError();
11963 } else {
11964 PyErr_Restore(__pyx_t_8, __pyx_t_7, __pyx_t_6);
11965 }
11966 __pyx_t_8 = __pyx_t_7 = __pyx_t_6 = 0;
11967 }
11968 __pyx_pybuffernd_sum_data.diminfo[0].strides = __pyx_pybuffernd_sum_data.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_sum_data.diminfo[0].shape = __pyx_pybuffernd_sum_data.rcbuffer->pybuffer.shape[0];
11969 if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(0, 408, __pyx_L1_error)
11970 }
11971 __pyx_v_sum_data = ((PyArrayObject *)__pyx_t_3);
11972 __pyx_t_3 = 0;
11973
11974 /* "bx/bbi/bbi_file.pyx":409
11975 * max_val = rval.max_val
11976 * sum_data = rval.sum_data
11977 * sum_squares = rval.sum_squares # <<<<<<<<<<<<<<
11978 * # First, load up summaries
11979 * reader = self.bbi_file.reader
11980 */
11981 __pyx_t_3 = ((PyObject *)__pyx_v_rval->sum_squares);
11982 __Pyx_INCREF(__pyx_t_3);
11983 {
11984 __Pyx_BufFmt_StackElem __pyx_stack[1];
11985 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_squares.rcbuffer->pybuffer);
11986 __pyx_t_5 = __Pyx_GetBufferAndValidate(&__pyx_pybuffernd_sum_squares.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_3), &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack);
11987 if (unlikely(__pyx_t_5 < 0)) {
11988 PyErr_Fetch(&__pyx_t_6, &__pyx_t_7, &__pyx_t_8);
11989 if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_sum_squares.rcbuffer->pybuffer, (PyObject*)__pyx_v_sum_squares, &__Pyx_TypeInfo_nn___pyx_t_5numpy_float64_t, PyBUF_FORMAT| PyBUF_STRIDES| PyBUF_WRITABLE, 1, 0, __pyx_stack) == -1)) {
11990 Py_XDECREF(__pyx_t_6); Py_XDECREF(__pyx_t_7); Py_XDECREF(__pyx_t_8);
11991 __Pyx_RaiseBufferFallbackError();
11992 } else {
11993 PyErr_Restore(__pyx_t_6, __pyx_t_7, __pyx_t_8);
11994 }
11995 __pyx_t_6 = __pyx_t_7 = __pyx_t_8 = 0;
11996 }
11997 __pyx_pybuffernd_sum_squares.diminfo[0].strides = __pyx_pybuffernd_sum_squares.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_sum_squares.diminfo[0].shape = __pyx_pybuffernd_sum_squares.rcbuffer->pybuffer.shape[0];
11998 if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(0, 409, __pyx_L1_error)
11999 }
12000 __pyx_v_sum_squares = ((PyArrayObject *)__pyx_t_3);
12001 __pyx_t_3 = 0;
12002
12003 /* "bx/bbi/bbi_file.pyx":411
12004 * sum_squares = rval.sum_squares
12005 * # First, load up summaries
12006 * reader = self.bbi_file.reader # <<<<<<<<<<<<<<
12007 * reader.seek( self.index_offset )
12008 * summaries = self._summary_blocks_in_region(chrom_id, start, end)
12009 */
12010 __pyx_t_3 = __pyx_v_self->bbi_file->reader;
12011 __Pyx_INCREF(__pyx_t_3);
12012 __pyx_v_reader = __pyx_t_3;
12013 __pyx_t_3 = 0;
12014
12015 /* "bx/bbi/bbi_file.pyx":412
12016 * # First, load up summaries
12017 * reader = self.bbi_file.reader
12018 * reader.seek( self.index_offset ) # <<<<<<<<<<<<<<
12019 * summaries = self._summary_blocks_in_region(chrom_id, start, end)
12020 *
12021 */
12022 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_reader, __pyx_n_s_seek); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 412, __pyx_L1_error)
12023 __Pyx_GOTREF(__pyx_t_4);
12024 __pyx_t_2 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->index_offset); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 412, __pyx_L1_error)
12025 __Pyx_GOTREF(__pyx_t_2);
12026 __pyx_t_1 = NULL;
12027 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
12028 __pyx_t_1 = PyMethod_GET_SELF(__pyx_t_4);
12029 if (likely(__pyx_t_1)) {
12030 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
12031 __Pyx_INCREF(__pyx_t_1);
12032 __Pyx_INCREF(function);
12033 __Pyx_DECREF_SET(__pyx_t_4, function);
12034 }
12035 }
12036 __pyx_t_3 = (__pyx_t_1) ? __Pyx_PyObject_Call2Args(__pyx_t_4, __pyx_t_1, __pyx_t_2) : __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_2);
12037 __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
12038 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
12039 if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 412, __pyx_L1_error)
12040 __Pyx_GOTREF(__pyx_t_3);
12041 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
12042 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
12043
12044 /* "bx/bbi/bbi_file.pyx":413
12045 * reader = self.bbi_file.reader
12046 * reader.seek( self.index_offset )
12047 * summaries = self._summary_blocks_in_region(chrom_id, start, end) # <<<<<<<<<<<<<<
12048 *
12049 * base_step = (end - start) / summary_size
12050 */
12051 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_summary_blocks_in_region); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 413, __pyx_L1_error)
12052 __Pyx_GOTREF(__pyx_t_4);
12053 __pyx_t_2 = __Pyx_PyInt_From_unsigned_int(__pyx_v_chrom_id); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 413, __pyx_L1_error)
12054 __Pyx_GOTREF(__pyx_t_2);
12055 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_start); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 413, __pyx_L1_error)
12056 __Pyx_GOTREF(__pyx_t_1);
12057 __pyx_t_9 = __Pyx_PyInt_From_unsigned_int(__pyx_v_end); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 413, __pyx_L1_error)
12058 __Pyx_GOTREF(__pyx_t_9);
12059 __pyx_t_10 = NULL;
12060 __pyx_t_5 = 0;
12061 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
12062 __pyx_t_10 = PyMethod_GET_SELF(__pyx_t_4);
12063 if (likely(__pyx_t_10)) {
12064 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
12065 __Pyx_INCREF(__pyx_t_10);
12066 __Pyx_INCREF(function);
12067 __Pyx_DECREF_SET(__pyx_t_4, function);
12068 __pyx_t_5 = 1;
12069 }
12070 }
12071 #if CYTHON_FAST_PYCALL
12072 if (PyFunction_Check(__pyx_t_4)) {
12073 PyObject *__pyx_temp[4] = {__pyx_t_10, __pyx_t_2, __pyx_t_1, __pyx_t_9};
12074 __pyx_t_3 = __Pyx_PyFunction_FastCall(__pyx_t_4, __pyx_temp+1-__pyx_t_5, 3+__pyx_t_5); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 413, __pyx_L1_error)
12075 __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
12076 __Pyx_GOTREF(__pyx_t_3);
12077 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
12078 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
12079 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
12080 } else
12081 #endif
12082 #if CYTHON_FAST_PYCCALL
12083 if (__Pyx_PyFastCFunction_Check(__pyx_t_4)) {
12084 PyObject *__pyx_temp[4] = {__pyx_t_10, __pyx_t_2, __pyx_t_1, __pyx_t_9};
12085 __pyx_t_3 = __Pyx_PyCFunction_FastCall(__pyx_t_4, __pyx_temp+1-__pyx_t_5, 3+__pyx_t_5); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 413, __pyx_L1_error)
12086 __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
12087 __Pyx_GOTREF(__pyx_t_3);
12088 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
12089 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
12090 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
12091 } else
12092 #endif
12093 {
12094 __pyx_t_11 = PyTuple_New(3+__pyx_t_5); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 413, __pyx_L1_error)
12095 __Pyx_GOTREF(__pyx_t_11);
12096 if (__pyx_t_10) {
12097 __Pyx_GIVEREF(__pyx_t_10); PyTuple_SET_ITEM(__pyx_t_11, 0, __pyx_t_10); __pyx_t_10 = NULL;
12098 }
12099 __Pyx_GIVEREF(__pyx_t_2);
12100 PyTuple_SET_ITEM(__pyx_t_11, 0+__pyx_t_5, __pyx_t_2);
12101 __Pyx_GIVEREF(__pyx_t_1);
12102 PyTuple_SET_ITEM(__pyx_t_11, 1+__pyx_t_5, __pyx_t_1);
12103 __Pyx_GIVEREF(__pyx_t_9);
12104 PyTuple_SET_ITEM(__pyx_t_11, 2+__pyx_t_5, __pyx_t_9);
12105 __pyx_t_2 = 0;
12106 __pyx_t_1 = 0;
12107 __pyx_t_9 = 0;
12108 __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_11, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 413, __pyx_L1_error)
12109 __Pyx_GOTREF(__pyx_t_3);
12110 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
12111 }
12112 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
12113 __pyx_v_summaries = __pyx_t_3;
12114 __pyx_t_3 = 0;
12115
12116 /* "bx/bbi/bbi_file.pyx":415
12117 * summaries = self._summary_blocks_in_region(chrom_id, start, end)
12118 *
12119 * base_step = (end - start) / summary_size # <<<<<<<<<<<<<<
12120 * base_start = start
12121 * base_end = start
12122 */
12123 __pyx_t_12 = (__pyx_v_end - __pyx_v_start);
12124 if (unlikely(__pyx_v_summary_size == 0)) {
12125 PyErr_SetString(PyExc_ZeroDivisionError, "integer division or modulo by zero");
12126 __PYX_ERR(0, 415, __pyx_L1_error)
12127 }
12128 __pyx_v_base_step = (__pyx_t_12 / __pyx_v_summary_size);
12129
12130 /* "bx/bbi/bbi_file.pyx":416
12131 *
12132 * base_step = (end - start) / summary_size
12133 * base_start = start # <<<<<<<<<<<<<<
12134 * base_end = start
12135 *
12136 */
12137 __pyx_v_base_start = __pyx_v_start;
12138
12139 /* "bx/bbi/bbi_file.pyx":417
12140 * base_step = (end - start) / summary_size
12141 * base_start = start
12142 * base_end = start # <<<<<<<<<<<<<<
12143 *
12144 * for i in range(summary_size):
12145 */
12146 __pyx_v_base_end = __pyx_v_start;
12147
12148 /* "bx/bbi/bbi_file.pyx":419
12149 * base_end = start
12150 *
12151 * for i in range(summary_size): # <<<<<<<<<<<<<<
12152 * base_end += base_step
12153 *
12154 */
12155 __pyx_t_5 = __pyx_v_summary_size;
12156 __pyx_t_13 = __pyx_t_5;
12157 for (__pyx_t_14 = 0; __pyx_t_14 < __pyx_t_13; __pyx_t_14+=1) {
12158 __pyx_v_i = __pyx_t_14;
12159
12160 /* "bx/bbi/bbi_file.pyx":420
12161 *
12162 * for i in range(summary_size):
12163 * base_end += base_step # <<<<<<<<<<<<<<
12164 *
12165 * while summaries and summaries[0].end <= base_start:
12166 */
12167 __pyx_v_base_end = (__pyx_v_base_end + __pyx_v_base_step);
12168
12169 /* "bx/bbi/bbi_file.pyx":422
12170 * base_end += base_step
12171 *
12172 * while summaries and summaries[0].end <= base_start: # <<<<<<<<<<<<<<
12173 * summaries.popleft()
12174 *
12175 */
12176 while (1) {
12177 __pyx_t_16 = __Pyx_PyObject_IsTrue(__pyx_v_summaries); if (unlikely(__pyx_t_16 < 0)) __PYX_ERR(0, 422, __pyx_L1_error)
12178 if (__pyx_t_16) {
12179 } else {
12180 __pyx_t_15 = __pyx_t_16;
12181 goto __pyx_L7_bool_binop_done;
12182 }
12183 __pyx_t_3 = __Pyx_GetItemInt(__pyx_v_summaries, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 422, __pyx_L1_error)
12184 __Pyx_GOTREF(__pyx_t_3);
12185 __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_end); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 422, __pyx_L1_error)
12186 __Pyx_GOTREF(__pyx_t_4);
12187 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
12188 __pyx_t_3 = __Pyx_PyInt_From_unsigned_int(__pyx_v_base_start); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 422, __pyx_L1_error)
12189 __Pyx_GOTREF(__pyx_t_3);
12190 __pyx_t_11 = PyObject_RichCompare(__pyx_t_4, __pyx_t_3, Py_LE); __Pyx_XGOTREF(__pyx_t_11); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 422, __pyx_L1_error)
12191 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
12192 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
12193 __pyx_t_16 = __Pyx_PyObject_IsTrue(__pyx_t_11); if (unlikely(__pyx_t_16 < 0)) __PYX_ERR(0, 422, __pyx_L1_error)
12194 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
12195 __pyx_t_15 = __pyx_t_16;
12196 __pyx_L7_bool_binop_done:;
12197 if (!__pyx_t_15) break;
12198
12199 /* "bx/bbi/bbi_file.pyx":423
12200 *
12201 * while summaries and summaries[0].end <= base_start:
12202 * summaries.popleft() # <<<<<<<<<<<<<<
12203 *
12204 * valid_count[i], sum_data[i], sum_squares[i], min_val[i], max_val[i] = self._get_summary_slice(base_start, base_end, summaries)
12205 */
12206 __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_summaries, __pyx_n_s_popleft); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 423, __pyx_L1_error)
12207 __Pyx_GOTREF(__pyx_t_3);
12208 __pyx_t_4 = NULL;
12209 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
12210 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_3);
12211 if (likely(__pyx_t_4)) {
12212 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
12213 __Pyx_INCREF(__pyx_t_4);
12214 __Pyx_INCREF(function);
12215 __Pyx_DECREF_SET(__pyx_t_3, function);
12216 }
12217 }
12218 __pyx_t_11 = (__pyx_t_4) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_4) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
12219 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
12220 if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 423, __pyx_L1_error)
12221 __Pyx_GOTREF(__pyx_t_11);
12222 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
12223 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
12224 }
12225
12226 /* "bx/bbi/bbi_file.pyx":425
12227 * summaries.popleft()
12228 *
12229 * valid_count[i], sum_data[i], sum_squares[i], min_val[i], max_val[i] = self._get_summary_slice(base_start, base_end, summaries) # <<<<<<<<<<<<<<
12230 * base_start = base_end
12231 *
12232 */
12233 __pyx_t_11 = ((struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self->__pyx_vtab)->_get_summary_slice(__pyx_v_self, __pyx_v_base_start, __pyx_v_base_end, __pyx_v_summaries); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 425, __pyx_L1_error)
12234 __Pyx_GOTREF(__pyx_t_11);
12235 if ((likely(PyTuple_CheckExact(__pyx_t_11))) || (PyList_CheckExact(__pyx_t_11))) {
12236 PyObject* sequence = __pyx_t_11;
12237 Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
12238 if (unlikely(size != 5)) {
12239 if (size > 5) __Pyx_RaiseTooManyValuesError(5);
12240 else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
12241 __PYX_ERR(0, 425, __pyx_L1_error)
12242 }
12243 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
12244 if (likely(PyTuple_CheckExact(sequence))) {
12245 __pyx_t_3 = PyTuple_GET_ITEM(sequence, 0);
12246 __pyx_t_4 = PyTuple_GET_ITEM(sequence, 1);
12247 __pyx_t_9 = PyTuple_GET_ITEM(sequence, 2);
12248 __pyx_t_1 = PyTuple_GET_ITEM(sequence, 3);
12249 __pyx_t_2 = PyTuple_GET_ITEM(sequence, 4);
12250 } else {
12251 __pyx_t_3 = PyList_GET_ITEM(sequence, 0);
12252 __pyx_t_4 = PyList_GET_ITEM(sequence, 1);
12253 __pyx_t_9 = PyList_GET_ITEM(sequence, 2);
12254 __pyx_t_1 = PyList_GET_ITEM(sequence, 3);
12255 __pyx_t_2 = PyList_GET_ITEM(sequence, 4);
12256 }
12257 __Pyx_INCREF(__pyx_t_3);
12258 __Pyx_INCREF(__pyx_t_4);
12259 __Pyx_INCREF(__pyx_t_9);
12260 __Pyx_INCREF(__pyx_t_1);
12261 __Pyx_INCREF(__pyx_t_2);
12262 #else
12263 {
12264 Py_ssize_t i;
12265 PyObject** temps[5] = {&__pyx_t_3,&__pyx_t_4,&__pyx_t_9,&__pyx_t_1,&__pyx_t_2};
12266 for (i=0; i < 5; i++) {
12267 PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) __PYX_ERR(0, 425, __pyx_L1_error)
12268 __Pyx_GOTREF(item);
12269 *(temps[i]) = item;
12270 }
12271 }
12272 #endif
12273 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
12274 } else {
12275 Py_ssize_t index = -1;
12276 PyObject** temps[5] = {&__pyx_t_3,&__pyx_t_4,&__pyx_t_9,&__pyx_t_1,&__pyx_t_2};
12277 __pyx_t_10 = PyObject_GetIter(__pyx_t_11); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 425, __pyx_L1_error)
12278 __Pyx_GOTREF(__pyx_t_10);
12279 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
12280 __pyx_t_17 = Py_TYPE(__pyx_t_10)->tp_iternext;
12281 for (index=0; index < 5; index++) {
12282 PyObject* item = __pyx_t_17(__pyx_t_10); if (unlikely(!item)) goto __pyx_L9_unpacking_failed;
12283 __Pyx_GOTREF(item);
12284 *(temps[index]) = item;
12285 }
12286 if (__Pyx_IternextUnpackEndCheck(__pyx_t_17(__pyx_t_10), 5) < 0) __PYX_ERR(0, 425, __pyx_L1_error)
12287 __pyx_t_17 = NULL;
12288 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
12289 goto __pyx_L10_unpacking_done;
12290 __pyx_L9_unpacking_failed:;
12291 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
12292 __pyx_t_17 = NULL;
12293 if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
12294 __PYX_ERR(0, 425, __pyx_L1_error)
12295 __pyx_L10_unpacking_done:;
12296 }
12297 __pyx_t_18 = __pyx_PyFloat_AsDouble(__pyx_t_3); if (unlikely((__pyx_t_18 == ((npy_float64)-1)) && PyErr_Occurred())) __PYX_ERR(0, 425, __pyx_L1_error)
12298 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
12299 __pyx_t_19 = __pyx_PyFloat_AsDouble(__pyx_t_4); if (unlikely((__pyx_t_19 == ((npy_float64)-1)) && PyErr_Occurred())) __PYX_ERR(0, 425, __pyx_L1_error)
12300 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
12301 __pyx_t_20 = __pyx_PyFloat_AsDouble(__pyx_t_9); if (unlikely((__pyx_t_20 == ((npy_float64)-1)) && PyErr_Occurred())) __PYX_ERR(0, 425, __pyx_L1_error)
12302 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
12303 __pyx_t_21 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_21 == ((npy_float64)-1)) && PyErr_Occurred())) __PYX_ERR(0, 425, __pyx_L1_error)
12304 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
12305 __pyx_t_22 = __pyx_PyFloat_AsDouble(__pyx_t_2); if (unlikely((__pyx_t_22 == ((npy_float64)-1)) && PyErr_Occurred())) __PYX_ERR(0, 425, __pyx_L1_error)
12306 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
12307 __pyx_t_23 = __pyx_v_i;
12308 __pyx_t_24 = -1;
12309 if (__pyx_t_23 < 0) {
12310 __pyx_t_23 += __pyx_pybuffernd_valid_count.diminfo[0].shape;
12311 if (unlikely(__pyx_t_23 < 0)) __pyx_t_24 = 0;
12312 } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_valid_count.diminfo[0].shape)) __pyx_t_24 = 0;
12313 if (unlikely(__pyx_t_24 != -1)) {
12314 __Pyx_RaiseBufferIndexError(__pyx_t_24);
12315 __PYX_ERR(0, 425, __pyx_L1_error)
12316 }
12317 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_valid_count.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_valid_count.diminfo[0].strides) = __pyx_t_18;
12318 __pyx_t_23 = __pyx_v_i;
12319 __pyx_t_24 = -1;
12320 if (__pyx_t_23 < 0) {
12321 __pyx_t_23 += __pyx_pybuffernd_sum_data.diminfo[0].shape;
12322 if (unlikely(__pyx_t_23 < 0)) __pyx_t_24 = 0;
12323 } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_sum_data.diminfo[0].shape)) __pyx_t_24 = 0;
12324 if (unlikely(__pyx_t_24 != -1)) {
12325 __Pyx_RaiseBufferIndexError(__pyx_t_24);
12326 __PYX_ERR(0, 425, __pyx_L1_error)
12327 }
12328 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_sum_data.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_sum_data.diminfo[0].strides) = __pyx_t_19;
12329 __pyx_t_23 = __pyx_v_i;
12330 __pyx_t_24 = -1;
12331 if (__pyx_t_23 < 0) {
12332 __pyx_t_23 += __pyx_pybuffernd_sum_squares.diminfo[0].shape;
12333 if (unlikely(__pyx_t_23 < 0)) __pyx_t_24 = 0;
12334 } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_sum_squares.diminfo[0].shape)) __pyx_t_24 = 0;
12335 if (unlikely(__pyx_t_24 != -1)) {
12336 __Pyx_RaiseBufferIndexError(__pyx_t_24);
12337 __PYX_ERR(0, 425, __pyx_L1_error)
12338 }
12339 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_sum_squares.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_sum_squares.diminfo[0].strides) = __pyx_t_20;
12340 __pyx_t_23 = __pyx_v_i;
12341 __pyx_t_24 = -1;
12342 if (__pyx_t_23 < 0) {
12343 __pyx_t_23 += __pyx_pybuffernd_min_val.diminfo[0].shape;
12344 if (unlikely(__pyx_t_23 < 0)) __pyx_t_24 = 0;
12345 } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_min_val.diminfo[0].shape)) __pyx_t_24 = 0;
12346 if (unlikely(__pyx_t_24 != -1)) {
12347 __Pyx_RaiseBufferIndexError(__pyx_t_24);
12348 __PYX_ERR(0, 425, __pyx_L1_error)
12349 }
12350 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_min_val.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_min_val.diminfo[0].strides) = __pyx_t_21;
12351 __pyx_t_23 = __pyx_v_i;
12352 __pyx_t_24 = -1;
12353 if (__pyx_t_23 < 0) {
12354 __pyx_t_23 += __pyx_pybuffernd_max_val.diminfo[0].shape;
12355 if (unlikely(__pyx_t_23 < 0)) __pyx_t_24 = 0;
12356 } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_max_val.diminfo[0].shape)) __pyx_t_24 = 0;
12357 if (unlikely(__pyx_t_24 != -1)) {
12358 __Pyx_RaiseBufferIndexError(__pyx_t_24);
12359 __PYX_ERR(0, 425, __pyx_L1_error)
12360 }
12361 *__Pyx_BufPtrStrided1d(__pyx_t_5numpy_float64_t *, __pyx_pybuffernd_max_val.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_max_val.diminfo[0].strides) = __pyx_t_22;
12362
12363 /* "bx/bbi/bbi_file.pyx":426
12364 *
12365 * valid_count[i], sum_data[i], sum_squares[i], min_val[i], max_val[i] = self._get_summary_slice(base_start, base_end, summaries)
12366 * base_start = base_end # <<<<<<<<<<<<<<
12367 *
12368 * return rval
12369 */
12370 __pyx_v_base_start = __pyx_v_base_end;
12371 }
12372
12373 /* "bx/bbi/bbi_file.pyx":428
12374 * base_start = base_end
12375 *
12376 * return rval # <<<<<<<<<<<<<<
12377 */
12378 __Pyx_XDECREF(__pyx_r);
12379 __Pyx_INCREF(((PyObject *)__pyx_v_rval));
12380 __pyx_r = ((PyObject *)__pyx_v_rval);
12381 goto __pyx_L0;
12382
12383 /* "bx/bbi/bbi_file.pyx":384
12384 * return valid_count, sum_data, sum_squares, min_val, max_val
12385 *
12386 * cdef _summarize( self, bits32 chrom_id, bits32 start, bits32 end, int summary_size ): # <<<<<<<<<<<<<<
12387 * """
12388 * Summarize directly from file.
12389 */
12390
12391 /* function exit code */
12392 __pyx_L1_error:;
12393 __Pyx_XDECREF(__pyx_t_1);
12394 __Pyx_XDECREF(__pyx_t_2);
12395 __Pyx_XDECREF(__pyx_t_3);
12396 __Pyx_XDECREF(__pyx_t_4);
12397 __Pyx_XDECREF(__pyx_t_9);
12398 __Pyx_XDECREF(__pyx_t_10);
12399 __Pyx_XDECREF(__pyx_t_11);
12400 { PyObject *__pyx_type, *__pyx_value, *__pyx_tb;
12401 __Pyx_PyThreadState_declare
12402 __Pyx_PyThreadState_assign
12403 __Pyx_ErrFetch(&__pyx_type, &__pyx_value, &__pyx_tb);
12404 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_max_val.rcbuffer->pybuffer);
12405 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_min_val.rcbuffer->pybuffer);
12406 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_data.rcbuffer->pybuffer);
12407 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_squares.rcbuffer->pybuffer);
12408 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_valid_count.rcbuffer->pybuffer);
12409 __Pyx_ErrRestore(__pyx_type, __pyx_value, __pyx_tb);}
12410 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel._summarize", __pyx_clineno, __pyx_lineno, __pyx_filename);
12411 __pyx_r = 0;
12412 goto __pyx_L2;
12413 __pyx_L0:;
12414 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_max_val.rcbuffer->pybuffer);
12415 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_min_val.rcbuffer->pybuffer);
12416 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_data.rcbuffer->pybuffer);
12417 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_sum_squares.rcbuffer->pybuffer);
12418 __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_valid_count.rcbuffer->pybuffer);
12419 __pyx_L2:;
12420 __Pyx_XDECREF((PyObject *)__pyx_v_valid_count);
12421 __Pyx_XDECREF((PyObject *)__pyx_v_min_val);
12422 __Pyx_XDECREF((PyObject *)__pyx_v_max_val);
12423 __Pyx_XDECREF((PyObject *)__pyx_v_sum_data);
12424 __Pyx_XDECREF((PyObject *)__pyx_v_sum_squares);
12425 __Pyx_XDECREF((PyObject *)__pyx_v_rval);
12426 __Pyx_XDECREF(__pyx_v_reader);
12427 __Pyx_XDECREF(__pyx_v_summaries);
12428 __Pyx_XGIVEREF(__pyx_r);
12429 __Pyx_RefNannyFinishContext();
12430 return __pyx_r;
12431 }
12432
12433 /* "bx/bbi/bbi_file.pyx":294
12434 * cdef class ZoomLevel:
12435 * cdef BBIFile bbi_file
12436 * cdef public bits32 reduction_level # <<<<<<<<<<<<<<
12437 * cdef bits32 reserved
12438 * cdef public bits64 data_offset
12439 */
12440
12441 /* Python wrapper */
12442 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_1__get__(PyObject * __pyx_v_self)12443 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_1__get__(PyObject *__pyx_v_self) {
12444 PyObject *__pyx_r = 0;
12445 __Pyx_RefNannyDeclarations
12446 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
12447 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self));
12448
12449 /* function exit code */
12450 __Pyx_RefNannyFinishContext();
12451 return __pyx_r;
12452 }
12453
__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self)12454 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self) {
12455 PyObject *__pyx_r = NULL;
12456 __Pyx_RefNannyDeclarations
12457 PyObject *__pyx_t_1 = NULL;
12458 int __pyx_lineno = 0;
12459 const char *__pyx_filename = NULL;
12460 int __pyx_clineno = 0;
12461 __Pyx_RefNannySetupContext("__get__", 0);
12462 __Pyx_XDECREF(__pyx_r);
12463 __pyx_t_1 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->reduction_level); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 294, __pyx_L1_error)
12464 __Pyx_GOTREF(__pyx_t_1);
12465 __pyx_r = __pyx_t_1;
12466 __pyx_t_1 = 0;
12467 goto __pyx_L0;
12468
12469 /* function exit code */
12470 __pyx_L1_error:;
12471 __Pyx_XDECREF(__pyx_t_1);
12472 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel.reduction_level.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
12473 __pyx_r = NULL;
12474 __pyx_L0:;
12475 __Pyx_XGIVEREF(__pyx_r);
12476 __Pyx_RefNannyFinishContext();
12477 return __pyx_r;
12478 }
12479
12480 /* Python wrapper */
12481 static int __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)12482 static int __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
12483 int __pyx_r;
12484 __Pyx_RefNannyDeclarations
12485 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
12486 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self), ((PyObject *)__pyx_v_value));
12487
12488 /* function exit code */
12489 __Pyx_RefNannyFinishContext();
12490 return __pyx_r;
12491 }
12492
__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self,PyObject * __pyx_v_value)12493 static int __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, PyObject *__pyx_v_value) {
12494 int __pyx_r;
12495 __Pyx_RefNannyDeclarations
12496 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_1;
12497 int __pyx_lineno = 0;
12498 const char *__pyx_filename = NULL;
12499 int __pyx_clineno = 0;
12500 __Pyx_RefNannySetupContext("__set__", 0);
12501 __pyx_t_1 = __Pyx_PyInt_As_unsigned_int(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(0, 294, __pyx_L1_error)
12502 __pyx_v_self->reduction_level = __pyx_t_1;
12503
12504 /* function exit code */
12505 __pyx_r = 0;
12506 goto __pyx_L0;
12507 __pyx_L1_error:;
12508 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel.reduction_level.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
12509 __pyx_r = -1;
12510 __pyx_L0:;
12511 __Pyx_RefNannyFinishContext();
12512 return __pyx_r;
12513 }
12514
12515 /* "bx/bbi/bbi_file.pyx":296
12516 * cdef public bits32 reduction_level
12517 * cdef bits32 reserved
12518 * cdef public bits64 data_offset # <<<<<<<<<<<<<<
12519 * cdef public bits64 index_offset
12520 * cdef int item_count
12521 */
12522
12523 /* Python wrapper */
12524 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_1__get__(PyObject * __pyx_v_self)12525 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_1__get__(PyObject *__pyx_v_self) {
12526 PyObject *__pyx_r = 0;
12527 __Pyx_RefNannyDeclarations
12528 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
12529 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self));
12530
12531 /* function exit code */
12532 __Pyx_RefNannyFinishContext();
12533 return __pyx_r;
12534 }
12535
__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self)12536 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self) {
12537 PyObject *__pyx_r = NULL;
12538 __Pyx_RefNannyDeclarations
12539 PyObject *__pyx_t_1 = NULL;
12540 int __pyx_lineno = 0;
12541 const char *__pyx_filename = NULL;
12542 int __pyx_clineno = 0;
12543 __Pyx_RefNannySetupContext("__get__", 0);
12544 __Pyx_XDECREF(__pyx_r);
12545 __pyx_t_1 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->data_offset); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 296, __pyx_L1_error)
12546 __Pyx_GOTREF(__pyx_t_1);
12547 __pyx_r = __pyx_t_1;
12548 __pyx_t_1 = 0;
12549 goto __pyx_L0;
12550
12551 /* function exit code */
12552 __pyx_L1_error:;
12553 __Pyx_XDECREF(__pyx_t_1);
12554 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel.data_offset.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
12555 __pyx_r = NULL;
12556 __pyx_L0:;
12557 __Pyx_XGIVEREF(__pyx_r);
12558 __Pyx_RefNannyFinishContext();
12559 return __pyx_r;
12560 }
12561
12562 /* Python wrapper */
12563 static int __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)12564 static int __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
12565 int __pyx_r;
12566 __Pyx_RefNannyDeclarations
12567 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
12568 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self), ((PyObject *)__pyx_v_value));
12569
12570 /* function exit code */
12571 __Pyx_RefNannyFinishContext();
12572 return __pyx_r;
12573 }
12574
__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self,PyObject * __pyx_v_value)12575 static int __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, PyObject *__pyx_v_value) {
12576 int __pyx_r;
12577 __Pyx_RefNannyDeclarations
12578 __pyx_t_2bx_3bbi_5types_bits64 __pyx_t_1;
12579 int __pyx_lineno = 0;
12580 const char *__pyx_filename = NULL;
12581 int __pyx_clineno = 0;
12582 __Pyx_RefNannySetupContext("__set__", 0);
12583 __pyx_t_1 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(0, 296, __pyx_L1_error)
12584 __pyx_v_self->data_offset = __pyx_t_1;
12585
12586 /* function exit code */
12587 __pyx_r = 0;
12588 goto __pyx_L0;
12589 __pyx_L1_error:;
12590 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel.data_offset.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
12591 __pyx_r = -1;
12592 __pyx_L0:;
12593 __Pyx_RefNannyFinishContext();
12594 return __pyx_r;
12595 }
12596
12597 /* "bx/bbi/bbi_file.pyx":297
12598 * cdef bits32 reserved
12599 * cdef public bits64 data_offset
12600 * cdef public bits64 index_offset # <<<<<<<<<<<<<<
12601 * cdef int item_count
12602 *
12603 */
12604
12605 /* Python wrapper */
12606 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_1__get__(PyObject *__pyx_v_self); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_1__get__(PyObject * __pyx_v_self)12607 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_1__get__(PyObject *__pyx_v_self) {
12608 PyObject *__pyx_r = 0;
12609 __Pyx_RefNannyDeclarations
12610 __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
12611 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset___get__(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self));
12612
12613 /* function exit code */
12614 __Pyx_RefNannyFinishContext();
12615 return __pyx_r;
12616 }
12617
__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self)12618 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset___get__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self) {
12619 PyObject *__pyx_r = NULL;
12620 __Pyx_RefNannyDeclarations
12621 PyObject *__pyx_t_1 = NULL;
12622 int __pyx_lineno = 0;
12623 const char *__pyx_filename = NULL;
12624 int __pyx_clineno = 0;
12625 __Pyx_RefNannySetupContext("__get__", 0);
12626 __Pyx_XDECREF(__pyx_r);
12627 __pyx_t_1 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->index_offset); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 297, __pyx_L1_error)
12628 __Pyx_GOTREF(__pyx_t_1);
12629 __pyx_r = __pyx_t_1;
12630 __pyx_t_1 = 0;
12631 goto __pyx_L0;
12632
12633 /* function exit code */
12634 __pyx_L1_error:;
12635 __Pyx_XDECREF(__pyx_t_1);
12636 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel.index_offset.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
12637 __pyx_r = NULL;
12638 __pyx_L0:;
12639 __Pyx_XGIVEREF(__pyx_r);
12640 __Pyx_RefNannyFinishContext();
12641 return __pyx_r;
12642 }
12643
12644 /* Python wrapper */
12645 static int __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_3__set__(PyObject * __pyx_v_self,PyObject * __pyx_v_value)12646 static int __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
12647 int __pyx_r;
12648 __Pyx_RefNannyDeclarations
12649 __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
12650 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_2__set__(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self), ((PyObject *)__pyx_v_value));
12651
12652 /* function exit code */
12653 __Pyx_RefNannyFinishContext();
12654 return __pyx_r;
12655 }
12656
__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self,PyObject * __pyx_v_value)12657 static int __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_2__set__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, PyObject *__pyx_v_value) {
12658 int __pyx_r;
12659 __Pyx_RefNannyDeclarations
12660 __pyx_t_2bx_3bbi_5types_bits64 __pyx_t_1;
12661 int __pyx_lineno = 0;
12662 const char *__pyx_filename = NULL;
12663 int __pyx_clineno = 0;
12664 __Pyx_RefNannySetupContext("__set__", 0);
12665 __pyx_t_1 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_v_value); if (unlikely((__pyx_t_1 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(0, 297, __pyx_L1_error)
12666 __pyx_v_self->index_offset = __pyx_t_1;
12667
12668 /* function exit code */
12669 __pyx_r = 0;
12670 goto __pyx_L0;
12671 __pyx_L1_error:;
12672 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel.index_offset.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
12673 __pyx_r = -1;
12674 __pyx_L0:;
12675 __Pyx_RefNannyFinishContext();
12676 return __pyx_r;
12677 }
12678
12679 /* "(tree fragment)":1
12680 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
12681 * cdef tuple state
12682 * cdef object _dict
12683 */
12684
12685 /* Python wrapper */
12686 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_3__reduce_cython__(PyObject * __pyx_v_self,CYTHON_UNUSED PyObject * unused)12687 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
12688 PyObject *__pyx_r = 0;
12689 __Pyx_RefNannyDeclarations
12690 __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
12691 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_2__reduce_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self));
12692
12693 /* function exit code */
12694 __Pyx_RefNannyFinishContext();
12695 return __pyx_r;
12696 }
12697
__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_2__reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self)12698 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_2__reduce_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self) {
12699 PyObject *__pyx_v_state = 0;
12700 PyObject *__pyx_v__dict = 0;
12701 int __pyx_v_use_setstate;
12702 PyObject *__pyx_r = NULL;
12703 __Pyx_RefNannyDeclarations
12704 PyObject *__pyx_t_1 = NULL;
12705 PyObject *__pyx_t_2 = NULL;
12706 PyObject *__pyx_t_3 = NULL;
12707 PyObject *__pyx_t_4 = NULL;
12708 PyObject *__pyx_t_5 = NULL;
12709 PyObject *__pyx_t_6 = NULL;
12710 int __pyx_t_7;
12711 int __pyx_t_8;
12712 int __pyx_lineno = 0;
12713 const char *__pyx_filename = NULL;
12714 int __pyx_clineno = 0;
12715 __Pyx_RefNannySetupContext("__reduce_cython__", 0);
12716
12717 /* "(tree fragment)":5
12718 * cdef object _dict
12719 * cdef bint use_setstate
12720 * state = (self.bbi_file, self.data_offset, self.index_offset, self.item_count, self.reduction_level, self.reserved) # <<<<<<<<<<<<<<
12721 * _dict = getattr(self, '__dict__', None)
12722 * if _dict is not None:
12723 */
12724 __pyx_t_1 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->data_offset); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 5, __pyx_L1_error)
12725 __Pyx_GOTREF(__pyx_t_1);
12726 __pyx_t_2 = __Pyx_PyInt_From_unsigned_PY_LONG_LONG(__pyx_v_self->index_offset); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
12727 __Pyx_GOTREF(__pyx_t_2);
12728 __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_self->item_count); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 5, __pyx_L1_error)
12729 __Pyx_GOTREF(__pyx_t_3);
12730 __pyx_t_4 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->reduction_level); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 5, __pyx_L1_error)
12731 __Pyx_GOTREF(__pyx_t_4);
12732 __pyx_t_5 = __Pyx_PyInt_From_unsigned_int(__pyx_v_self->reserved); if (unlikely(!__pyx_t_5)) __PYX_ERR(2, 5, __pyx_L1_error)
12733 __Pyx_GOTREF(__pyx_t_5);
12734 __pyx_t_6 = PyTuple_New(6); if (unlikely(!__pyx_t_6)) __PYX_ERR(2, 5, __pyx_L1_error)
12735 __Pyx_GOTREF(__pyx_t_6);
12736 __Pyx_INCREF(((PyObject *)__pyx_v_self->bbi_file));
12737 __Pyx_GIVEREF(((PyObject *)__pyx_v_self->bbi_file));
12738 PyTuple_SET_ITEM(__pyx_t_6, 0, ((PyObject *)__pyx_v_self->bbi_file));
12739 __Pyx_GIVEREF(__pyx_t_1);
12740 PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_1);
12741 __Pyx_GIVEREF(__pyx_t_2);
12742 PyTuple_SET_ITEM(__pyx_t_6, 2, __pyx_t_2);
12743 __Pyx_GIVEREF(__pyx_t_3);
12744 PyTuple_SET_ITEM(__pyx_t_6, 3, __pyx_t_3);
12745 __Pyx_GIVEREF(__pyx_t_4);
12746 PyTuple_SET_ITEM(__pyx_t_6, 4, __pyx_t_4);
12747 __Pyx_GIVEREF(__pyx_t_5);
12748 PyTuple_SET_ITEM(__pyx_t_6, 5, __pyx_t_5);
12749 __pyx_t_1 = 0;
12750 __pyx_t_2 = 0;
12751 __pyx_t_3 = 0;
12752 __pyx_t_4 = 0;
12753 __pyx_t_5 = 0;
12754 __pyx_v_state = ((PyObject*)__pyx_t_6);
12755 __pyx_t_6 = 0;
12756
12757 /* "(tree fragment)":6
12758 * cdef bint use_setstate
12759 * state = (self.bbi_file, self.data_offset, self.index_offset, self.item_count, self.reduction_level, self.reserved)
12760 * _dict = getattr(self, '__dict__', None) # <<<<<<<<<<<<<<
12761 * if _dict is not None:
12762 * state += (_dict,)
12763 */
12764 __pyx_t_6 = __Pyx_GetAttr3(((PyObject *)__pyx_v_self), __pyx_n_s_dict, Py_None); if (unlikely(!__pyx_t_6)) __PYX_ERR(2, 6, __pyx_L1_error)
12765 __Pyx_GOTREF(__pyx_t_6);
12766 __pyx_v__dict = __pyx_t_6;
12767 __pyx_t_6 = 0;
12768
12769 /* "(tree fragment)":7
12770 * state = (self.bbi_file, self.data_offset, self.index_offset, self.item_count, self.reduction_level, self.reserved)
12771 * _dict = getattr(self, '__dict__', None)
12772 * if _dict is not None: # <<<<<<<<<<<<<<
12773 * state += (_dict,)
12774 * use_setstate = True
12775 */
12776 __pyx_t_7 = (__pyx_v__dict != Py_None);
12777 __pyx_t_8 = (__pyx_t_7 != 0);
12778 if (__pyx_t_8) {
12779
12780 /* "(tree fragment)":8
12781 * _dict = getattr(self, '__dict__', None)
12782 * if _dict is not None:
12783 * state += (_dict,) # <<<<<<<<<<<<<<
12784 * use_setstate = True
12785 * else:
12786 */
12787 __pyx_t_6 = PyTuple_New(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(2, 8, __pyx_L1_error)
12788 __Pyx_GOTREF(__pyx_t_6);
12789 __Pyx_INCREF(__pyx_v__dict);
12790 __Pyx_GIVEREF(__pyx_v__dict);
12791 PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_v__dict);
12792 __pyx_t_5 = PyNumber_InPlaceAdd(__pyx_v_state, __pyx_t_6); if (unlikely(!__pyx_t_5)) __PYX_ERR(2, 8, __pyx_L1_error)
12793 __Pyx_GOTREF(__pyx_t_5);
12794 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
12795 __Pyx_DECREF_SET(__pyx_v_state, ((PyObject*)__pyx_t_5));
12796 __pyx_t_5 = 0;
12797
12798 /* "(tree fragment)":9
12799 * if _dict is not None:
12800 * state += (_dict,)
12801 * use_setstate = True # <<<<<<<<<<<<<<
12802 * else:
12803 * use_setstate = self.bbi_file is not None
12804 */
12805 __pyx_v_use_setstate = 1;
12806
12807 /* "(tree fragment)":7
12808 * state = (self.bbi_file, self.data_offset, self.index_offset, self.item_count, self.reduction_level, self.reserved)
12809 * _dict = getattr(self, '__dict__', None)
12810 * if _dict is not None: # <<<<<<<<<<<<<<
12811 * state += (_dict,)
12812 * use_setstate = True
12813 */
12814 goto __pyx_L3;
12815 }
12816
12817 /* "(tree fragment)":11
12818 * use_setstate = True
12819 * else:
12820 * use_setstate = self.bbi_file is not None # <<<<<<<<<<<<<<
12821 * if use_setstate:
12822 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, None), state
12823 */
12824 /*else*/ {
12825 __pyx_t_8 = (((PyObject *)__pyx_v_self->bbi_file) != Py_None);
12826 __pyx_v_use_setstate = __pyx_t_8;
12827 }
12828 __pyx_L3:;
12829
12830 /* "(tree fragment)":12
12831 * else:
12832 * use_setstate = self.bbi_file is not None
12833 * if use_setstate: # <<<<<<<<<<<<<<
12834 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, None), state
12835 * else:
12836 */
12837 __pyx_t_8 = (__pyx_v_use_setstate != 0);
12838 if (__pyx_t_8) {
12839
12840 /* "(tree fragment)":13
12841 * use_setstate = self.bbi_file is not None
12842 * if use_setstate:
12843 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, None), state # <<<<<<<<<<<<<<
12844 * else:
12845 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, state)
12846 */
12847 __Pyx_XDECREF(__pyx_r);
12848 __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_pyx_unpickle_ZoomLevel); if (unlikely(!__pyx_t_5)) __PYX_ERR(2, 13, __pyx_L1_error)
12849 __Pyx_GOTREF(__pyx_t_5);
12850 __pyx_t_6 = PyTuple_New(3); if (unlikely(!__pyx_t_6)) __PYX_ERR(2, 13, __pyx_L1_error)
12851 __Pyx_GOTREF(__pyx_t_6);
12852 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
12853 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
12854 PyTuple_SET_ITEM(__pyx_t_6, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
12855 __Pyx_INCREF(__pyx_int_57037653);
12856 __Pyx_GIVEREF(__pyx_int_57037653);
12857 PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_int_57037653);
12858 __Pyx_INCREF(Py_None);
12859 __Pyx_GIVEREF(Py_None);
12860 PyTuple_SET_ITEM(__pyx_t_6, 2, Py_None);
12861 __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 13, __pyx_L1_error)
12862 __Pyx_GOTREF(__pyx_t_4);
12863 __Pyx_GIVEREF(__pyx_t_5);
12864 PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_5);
12865 __Pyx_GIVEREF(__pyx_t_6);
12866 PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_6);
12867 __Pyx_INCREF(__pyx_v_state);
12868 __Pyx_GIVEREF(__pyx_v_state);
12869 PyTuple_SET_ITEM(__pyx_t_4, 2, __pyx_v_state);
12870 __pyx_t_5 = 0;
12871 __pyx_t_6 = 0;
12872 __pyx_r = __pyx_t_4;
12873 __pyx_t_4 = 0;
12874 goto __pyx_L0;
12875
12876 /* "(tree fragment)":12
12877 * else:
12878 * use_setstate = self.bbi_file is not None
12879 * if use_setstate: # <<<<<<<<<<<<<<
12880 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, None), state
12881 * else:
12882 */
12883 }
12884
12885 /* "(tree fragment)":15
12886 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, None), state
12887 * else:
12888 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, state) # <<<<<<<<<<<<<<
12889 * def __setstate_cython__(self, __pyx_state):
12890 * __pyx_unpickle_ZoomLevel__set_state(self, __pyx_state)
12891 */
12892 /*else*/ {
12893 __Pyx_XDECREF(__pyx_r);
12894 __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_pyx_unpickle_ZoomLevel); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 15, __pyx_L1_error)
12895 __Pyx_GOTREF(__pyx_t_4);
12896 __pyx_t_6 = PyTuple_New(3); if (unlikely(!__pyx_t_6)) __PYX_ERR(2, 15, __pyx_L1_error)
12897 __Pyx_GOTREF(__pyx_t_6);
12898 __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
12899 __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
12900 PyTuple_SET_ITEM(__pyx_t_6, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
12901 __Pyx_INCREF(__pyx_int_57037653);
12902 __Pyx_GIVEREF(__pyx_int_57037653);
12903 PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_int_57037653);
12904 __Pyx_INCREF(__pyx_v_state);
12905 __Pyx_GIVEREF(__pyx_v_state);
12906 PyTuple_SET_ITEM(__pyx_t_6, 2, __pyx_v_state);
12907 __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) __PYX_ERR(2, 15, __pyx_L1_error)
12908 __Pyx_GOTREF(__pyx_t_5);
12909 __Pyx_GIVEREF(__pyx_t_4);
12910 PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_4);
12911 __Pyx_GIVEREF(__pyx_t_6);
12912 PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_6);
12913 __pyx_t_4 = 0;
12914 __pyx_t_6 = 0;
12915 __pyx_r = __pyx_t_5;
12916 __pyx_t_5 = 0;
12917 goto __pyx_L0;
12918 }
12919
12920 /* "(tree fragment)":1
12921 * def __reduce_cython__(self): # <<<<<<<<<<<<<<
12922 * cdef tuple state
12923 * cdef object _dict
12924 */
12925
12926 /* function exit code */
12927 __pyx_L1_error:;
12928 __Pyx_XDECREF(__pyx_t_1);
12929 __Pyx_XDECREF(__pyx_t_2);
12930 __Pyx_XDECREF(__pyx_t_3);
12931 __Pyx_XDECREF(__pyx_t_4);
12932 __Pyx_XDECREF(__pyx_t_5);
12933 __Pyx_XDECREF(__pyx_t_6);
12934 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
12935 __pyx_r = NULL;
12936 __pyx_L0:;
12937 __Pyx_XDECREF(__pyx_v_state);
12938 __Pyx_XDECREF(__pyx_v__dict);
12939 __Pyx_XGIVEREF(__pyx_r);
12940 __Pyx_RefNannyFinishContext();
12941 return __pyx_r;
12942 }
12943
12944 /* "(tree fragment)":16
12945 * else:
12946 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, state)
12947 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
12948 * __pyx_unpickle_ZoomLevel__set_state(self, __pyx_state)
12949 */
12950
12951 /* Python wrapper */
12952 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_5__setstate_cython__(PyObject * __pyx_v_self,PyObject * __pyx_v___pyx_state)12953 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
12954 PyObject *__pyx_r = 0;
12955 __Pyx_RefNannyDeclarations
12956 __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
12957 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_4__setstate_cython__(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));
12958
12959 /* function exit code */
12960 __Pyx_RefNannyFinishContext();
12961 return __pyx_r;
12962 }
12963
__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_4__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v_self,PyObject * __pyx_v___pyx_state)12964 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_9ZoomLevel_4__setstate_cython__(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
12965 PyObject *__pyx_r = NULL;
12966 __Pyx_RefNannyDeclarations
12967 PyObject *__pyx_t_1 = NULL;
12968 int __pyx_lineno = 0;
12969 const char *__pyx_filename = NULL;
12970 int __pyx_clineno = 0;
12971 __Pyx_RefNannySetupContext("__setstate_cython__", 0);
12972
12973 /* "(tree fragment)":17
12974 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, state)
12975 * def __setstate_cython__(self, __pyx_state):
12976 * __pyx_unpickle_ZoomLevel__set_state(self, __pyx_state) # <<<<<<<<<<<<<<
12977 */
12978 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 17, __pyx_L1_error)
12979 __pyx_t_1 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_ZoomLevel__set_state(__pyx_v_self, ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 17, __pyx_L1_error)
12980 __Pyx_GOTREF(__pyx_t_1);
12981 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
12982
12983 /* "(tree fragment)":16
12984 * else:
12985 * return __pyx_unpickle_ZoomLevel, (type(self), 0x3665355, state)
12986 * def __setstate_cython__(self, __pyx_state): # <<<<<<<<<<<<<<
12987 * __pyx_unpickle_ZoomLevel__set_state(self, __pyx_state)
12988 */
12989
12990 /* function exit code */
12991 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
12992 goto __pyx_L0;
12993 __pyx_L1_error:;
12994 __Pyx_XDECREF(__pyx_t_1);
12995 __Pyx_AddTraceback("bx.bbi.bbi_file.ZoomLevel.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
12996 __pyx_r = NULL;
12997 __pyx_L0:;
12998 __Pyx_XGIVEREF(__pyx_r);
12999 __Pyx_RefNannyFinishContext();
13000 return __pyx_r;
13001 }
13002
13003 /* "(tree fragment)":1
13004 * def __pyx_unpickle_SummaryBlock(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
13005 * cdef object __pyx_PickleError
13006 * cdef object __pyx_result
13007 */
13008
13009 /* Python wrapper */
13010 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_1__pyx_unpickle_SummaryBlock(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
13011 static PyMethodDef __pyx_mdef_2bx_3bbi_8bbi_file_1__pyx_unpickle_SummaryBlock = {"__pyx_unpickle_SummaryBlock", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_1__pyx_unpickle_SummaryBlock, METH_VARARGS|METH_KEYWORDS, 0};
__pyx_pw_2bx_3bbi_8bbi_file_1__pyx_unpickle_SummaryBlock(PyObject * __pyx_self,PyObject * __pyx_args,PyObject * __pyx_kwds)13012 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_1__pyx_unpickle_SummaryBlock(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
13013 PyObject *__pyx_v___pyx_type = 0;
13014 long __pyx_v___pyx_checksum;
13015 PyObject *__pyx_v___pyx_state = 0;
13016 int __pyx_lineno = 0;
13017 const char *__pyx_filename = NULL;
13018 int __pyx_clineno = 0;
13019 PyObject *__pyx_r = 0;
13020 __Pyx_RefNannyDeclarations
13021 __Pyx_RefNannySetupContext("__pyx_unpickle_SummaryBlock (wrapper)", 0);
13022 {
13023 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_type,&__pyx_n_s_pyx_checksum,&__pyx_n_s_pyx_state,0};
13024 PyObject* values[3] = {0,0,0};
13025 if (unlikely(__pyx_kwds)) {
13026 Py_ssize_t kw_args;
13027 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
13028 switch (pos_args) {
13029 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
13030 CYTHON_FALLTHROUGH;
13031 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
13032 CYTHON_FALLTHROUGH;
13033 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
13034 CYTHON_FALLTHROUGH;
13035 case 0: break;
13036 default: goto __pyx_L5_argtuple_error;
13037 }
13038 kw_args = PyDict_Size(__pyx_kwds);
13039 switch (pos_args) {
13040 case 0:
13041 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_type)) != 0)) kw_args--;
13042 else goto __pyx_L5_argtuple_error;
13043 CYTHON_FALLTHROUGH;
13044 case 1:
13045 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_checksum)) != 0)) kw_args--;
13046 else {
13047 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_SummaryBlock", 1, 3, 3, 1); __PYX_ERR(2, 1, __pyx_L3_error)
13048 }
13049 CYTHON_FALLTHROUGH;
13050 case 2:
13051 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_state)) != 0)) kw_args--;
13052 else {
13053 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_SummaryBlock", 1, 3, 3, 2); __PYX_ERR(2, 1, __pyx_L3_error)
13054 }
13055 }
13056 if (unlikely(kw_args > 0)) {
13057 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_unpickle_SummaryBlock") < 0)) __PYX_ERR(2, 1, __pyx_L3_error)
13058 }
13059 } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
13060 goto __pyx_L5_argtuple_error;
13061 } else {
13062 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
13063 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
13064 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
13065 }
13066 __pyx_v___pyx_type = values[0];
13067 __pyx_v___pyx_checksum = __Pyx_PyInt_As_long(values[1]); if (unlikely((__pyx_v___pyx_checksum == (long)-1) && PyErr_Occurred())) __PYX_ERR(2, 1, __pyx_L3_error)
13068 __pyx_v___pyx_state = values[2];
13069 }
13070 goto __pyx_L4_argument_unpacking_done;
13071 __pyx_L5_argtuple_error:;
13072 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_SummaryBlock", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(2, 1, __pyx_L3_error)
13073 __pyx_L3_error:;
13074 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_SummaryBlock", __pyx_clineno, __pyx_lineno, __pyx_filename);
13075 __Pyx_RefNannyFinishContext();
13076 return NULL;
13077 __pyx_L4_argument_unpacking_done:;
13078 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file___pyx_unpickle_SummaryBlock(__pyx_self, __pyx_v___pyx_type, __pyx_v___pyx_checksum, __pyx_v___pyx_state);
13079
13080 /* function exit code */
13081 __Pyx_RefNannyFinishContext();
13082 return __pyx_r;
13083 }
13084
__pyx_pf_2bx_3bbi_8bbi_file___pyx_unpickle_SummaryBlock(CYTHON_UNUSED PyObject * __pyx_self,PyObject * __pyx_v___pyx_type,long __pyx_v___pyx_checksum,PyObject * __pyx_v___pyx_state)13085 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file___pyx_unpickle_SummaryBlock(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state) {
13086 PyObject *__pyx_v___pyx_PickleError = 0;
13087 PyObject *__pyx_v___pyx_result = 0;
13088 PyObject *__pyx_r = NULL;
13089 __Pyx_RefNannyDeclarations
13090 int __pyx_t_1;
13091 PyObject *__pyx_t_2 = NULL;
13092 PyObject *__pyx_t_3 = NULL;
13093 PyObject *__pyx_t_4 = NULL;
13094 PyObject *__pyx_t_5 = NULL;
13095 int __pyx_t_6;
13096 int __pyx_lineno = 0;
13097 const char *__pyx_filename = NULL;
13098 int __pyx_clineno = 0;
13099 __Pyx_RefNannySetupContext("__pyx_unpickle_SummaryBlock", 0);
13100
13101 /* "(tree fragment)":4
13102 * cdef object __pyx_PickleError
13103 * cdef object __pyx_result
13104 * if __pyx_checksum != 0x732cf8a: # <<<<<<<<<<<<<<
13105 * from pickle import PickleError as __pyx_PickleError
13106 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x732cf8a = (chrom_id, end, max_val, min_val, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13107 */
13108 __pyx_t_1 = ((__pyx_v___pyx_checksum != 0x732cf8a) != 0);
13109 if (__pyx_t_1) {
13110
13111 /* "(tree fragment)":5
13112 * cdef object __pyx_result
13113 * if __pyx_checksum != 0x732cf8a:
13114 * from pickle import PickleError as __pyx_PickleError # <<<<<<<<<<<<<<
13115 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x732cf8a = (chrom_id, end, max_val, min_val, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13116 * __pyx_result = SummaryBlock.__new__(__pyx_type)
13117 */
13118 __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
13119 __Pyx_GOTREF(__pyx_t_2);
13120 __Pyx_INCREF(__pyx_n_s_PickleError);
13121 __Pyx_GIVEREF(__pyx_n_s_PickleError);
13122 PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_PickleError);
13123 __pyx_t_3 = __Pyx_Import(__pyx_n_s_pickle, __pyx_t_2, -1); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 5, __pyx_L1_error)
13124 __Pyx_GOTREF(__pyx_t_3);
13125 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13126 __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_n_s_PickleError); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
13127 __Pyx_GOTREF(__pyx_t_2);
13128 __Pyx_INCREF(__pyx_t_2);
13129 __pyx_v___pyx_PickleError = __pyx_t_2;
13130 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13131 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
13132
13133 /* "(tree fragment)":6
13134 * if __pyx_checksum != 0x732cf8a:
13135 * from pickle import PickleError as __pyx_PickleError
13136 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x732cf8a = (chrom_id, end, max_val, min_val, start, sum_data, sum_squares, valid_count))" % __pyx_checksum) # <<<<<<<<<<<<<<
13137 * __pyx_result = SummaryBlock.__new__(__pyx_type)
13138 * if __pyx_state is not None:
13139 */
13140 __pyx_t_2 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 6, __pyx_L1_error)
13141 __Pyx_GOTREF(__pyx_t_2);
13142 __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Incompatible_checksums_s_vs_0x73, __pyx_t_2); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 6, __pyx_L1_error)
13143 __Pyx_GOTREF(__pyx_t_4);
13144 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13145 __Pyx_INCREF(__pyx_v___pyx_PickleError);
13146 __pyx_t_2 = __pyx_v___pyx_PickleError; __pyx_t_5 = NULL;
13147 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_2))) {
13148 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_2);
13149 if (likely(__pyx_t_5)) {
13150 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
13151 __Pyx_INCREF(__pyx_t_5);
13152 __Pyx_INCREF(function);
13153 __Pyx_DECREF_SET(__pyx_t_2, function);
13154 }
13155 }
13156 __pyx_t_3 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_5, __pyx_t_4) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_4);
13157 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
13158 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
13159 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 6, __pyx_L1_error)
13160 __Pyx_GOTREF(__pyx_t_3);
13161 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13162 __Pyx_Raise(__pyx_t_3, 0, 0, 0);
13163 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
13164 __PYX_ERR(2, 6, __pyx_L1_error)
13165
13166 /* "(tree fragment)":4
13167 * cdef object __pyx_PickleError
13168 * cdef object __pyx_result
13169 * if __pyx_checksum != 0x732cf8a: # <<<<<<<<<<<<<<
13170 * from pickle import PickleError as __pyx_PickleError
13171 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x732cf8a = (chrom_id, end, max_val, min_val, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13172 */
13173 }
13174
13175 /* "(tree fragment)":7
13176 * from pickle import PickleError as __pyx_PickleError
13177 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x732cf8a = (chrom_id, end, max_val, min_val, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13178 * __pyx_result = SummaryBlock.__new__(__pyx_type) # <<<<<<<<<<<<<<
13179 * if __pyx_state is not None:
13180 * __pyx_unpickle_SummaryBlock__set_state(<SummaryBlock> __pyx_result, __pyx_state)
13181 */
13182 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_ptype_2bx_3bbi_8bbi_file_SummaryBlock), __pyx_n_s_new); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 7, __pyx_L1_error)
13183 __Pyx_GOTREF(__pyx_t_2);
13184 __pyx_t_4 = NULL;
13185 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
13186 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_2);
13187 if (likely(__pyx_t_4)) {
13188 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
13189 __Pyx_INCREF(__pyx_t_4);
13190 __Pyx_INCREF(function);
13191 __Pyx_DECREF_SET(__pyx_t_2, function);
13192 }
13193 }
13194 __pyx_t_3 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_4, __pyx_v___pyx_type) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_v___pyx_type);
13195 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
13196 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 7, __pyx_L1_error)
13197 __Pyx_GOTREF(__pyx_t_3);
13198 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13199 __pyx_v___pyx_result = __pyx_t_3;
13200 __pyx_t_3 = 0;
13201
13202 /* "(tree fragment)":8
13203 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x732cf8a = (chrom_id, end, max_val, min_val, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13204 * __pyx_result = SummaryBlock.__new__(__pyx_type)
13205 * if __pyx_state is not None: # <<<<<<<<<<<<<<
13206 * __pyx_unpickle_SummaryBlock__set_state(<SummaryBlock> __pyx_result, __pyx_state)
13207 * return __pyx_result
13208 */
13209 __pyx_t_1 = (__pyx_v___pyx_state != Py_None);
13210 __pyx_t_6 = (__pyx_t_1 != 0);
13211 if (__pyx_t_6) {
13212
13213 /* "(tree fragment)":9
13214 * __pyx_result = SummaryBlock.__new__(__pyx_type)
13215 * if __pyx_state is not None:
13216 * __pyx_unpickle_SummaryBlock__set_state(<SummaryBlock> __pyx_result, __pyx_state) # <<<<<<<<<<<<<<
13217 * return __pyx_result
13218 * cdef __pyx_unpickle_SummaryBlock__set_state(SummaryBlock __pyx_result, tuple __pyx_state):
13219 */
13220 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 9, __pyx_L1_error)
13221 __pyx_t_3 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummaryBlock__set_state(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *)__pyx_v___pyx_result), ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 9, __pyx_L1_error)
13222 __Pyx_GOTREF(__pyx_t_3);
13223 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
13224
13225 /* "(tree fragment)":8
13226 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x732cf8a = (chrom_id, end, max_val, min_val, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13227 * __pyx_result = SummaryBlock.__new__(__pyx_type)
13228 * if __pyx_state is not None: # <<<<<<<<<<<<<<
13229 * __pyx_unpickle_SummaryBlock__set_state(<SummaryBlock> __pyx_result, __pyx_state)
13230 * return __pyx_result
13231 */
13232 }
13233
13234 /* "(tree fragment)":10
13235 * if __pyx_state is not None:
13236 * __pyx_unpickle_SummaryBlock__set_state(<SummaryBlock> __pyx_result, __pyx_state)
13237 * return __pyx_result # <<<<<<<<<<<<<<
13238 * cdef __pyx_unpickle_SummaryBlock__set_state(SummaryBlock __pyx_result, tuple __pyx_state):
13239 * __pyx_result.chrom_id = __pyx_state[0]; __pyx_result.end = __pyx_state[1]; __pyx_result.max_val = __pyx_state[2]; __pyx_result.min_val = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13240 */
13241 __Pyx_XDECREF(__pyx_r);
13242 __Pyx_INCREF(__pyx_v___pyx_result);
13243 __pyx_r = __pyx_v___pyx_result;
13244 goto __pyx_L0;
13245
13246 /* "(tree fragment)":1
13247 * def __pyx_unpickle_SummaryBlock(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
13248 * cdef object __pyx_PickleError
13249 * cdef object __pyx_result
13250 */
13251
13252 /* function exit code */
13253 __pyx_L1_error:;
13254 __Pyx_XDECREF(__pyx_t_2);
13255 __Pyx_XDECREF(__pyx_t_3);
13256 __Pyx_XDECREF(__pyx_t_4);
13257 __Pyx_XDECREF(__pyx_t_5);
13258 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_SummaryBlock", __pyx_clineno, __pyx_lineno, __pyx_filename);
13259 __pyx_r = NULL;
13260 __pyx_L0:;
13261 __Pyx_XDECREF(__pyx_v___pyx_PickleError);
13262 __Pyx_XDECREF(__pyx_v___pyx_result);
13263 __Pyx_XGIVEREF(__pyx_r);
13264 __Pyx_RefNannyFinishContext();
13265 return __pyx_r;
13266 }
13267
13268 /* "(tree fragment)":11
13269 * __pyx_unpickle_SummaryBlock__set_state(<SummaryBlock> __pyx_result, __pyx_state)
13270 * return __pyx_result
13271 * cdef __pyx_unpickle_SummaryBlock__set_state(SummaryBlock __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
13272 * __pyx_result.chrom_id = __pyx_state[0]; __pyx_result.end = __pyx_state[1]; __pyx_result.max_val = __pyx_state[2]; __pyx_result.min_val = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13273 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'):
13274 */
13275
__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummaryBlock__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock * __pyx_v___pyx_result,PyObject * __pyx_v___pyx_state)13276 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummaryBlock__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock *__pyx_v___pyx_result, PyObject *__pyx_v___pyx_state) {
13277 PyObject *__pyx_r = NULL;
13278 __Pyx_RefNannyDeclarations
13279 PyObject *__pyx_t_1 = NULL;
13280 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_2;
13281 double __pyx_t_3;
13282 int __pyx_t_4;
13283 Py_ssize_t __pyx_t_5;
13284 int __pyx_t_6;
13285 int __pyx_t_7;
13286 PyObject *__pyx_t_8 = NULL;
13287 PyObject *__pyx_t_9 = NULL;
13288 PyObject *__pyx_t_10 = NULL;
13289 int __pyx_lineno = 0;
13290 const char *__pyx_filename = NULL;
13291 int __pyx_clineno = 0;
13292 __Pyx_RefNannySetupContext("__pyx_unpickle_SummaryBlock__set_state", 0);
13293
13294 /* "(tree fragment)":12
13295 * return __pyx_result
13296 * cdef __pyx_unpickle_SummaryBlock__set_state(SummaryBlock __pyx_result, tuple __pyx_state):
13297 * __pyx_result.chrom_id = __pyx_state[0]; __pyx_result.end = __pyx_state[1]; __pyx_result.max_val = __pyx_state[2]; __pyx_result.min_val = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7] # <<<<<<<<<<<<<<
13298 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'):
13299 * __pyx_result.__dict__.update(__pyx_state[8])
13300 */
13301 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13302 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13303 __PYX_ERR(2, 12, __pyx_L1_error)
13304 }
13305 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13306 __Pyx_GOTREF(__pyx_t_1);
13307 __pyx_t_2 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13308 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13309 __pyx_v___pyx_result->chrom_id = __pyx_t_2;
13310 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13311 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13312 __PYX_ERR(2, 12, __pyx_L1_error)
13313 }
13314 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13315 __Pyx_GOTREF(__pyx_t_1);
13316 __pyx_t_2 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13317 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13318 __pyx_v___pyx_result->end = __pyx_t_2;
13319 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13320 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13321 __PYX_ERR(2, 12, __pyx_L1_error)
13322 }
13323 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13324 __Pyx_GOTREF(__pyx_t_1);
13325 __pyx_t_3 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_3 == (double)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13326 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13327 __pyx_v___pyx_result->max_val = __pyx_t_3;
13328 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13329 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13330 __PYX_ERR(2, 12, __pyx_L1_error)
13331 }
13332 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13333 __Pyx_GOTREF(__pyx_t_1);
13334 __pyx_t_3 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_3 == (double)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13335 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13336 __pyx_v___pyx_result->min_val = __pyx_t_3;
13337 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13338 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13339 __PYX_ERR(2, 12, __pyx_L1_error)
13340 }
13341 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 4, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13342 __Pyx_GOTREF(__pyx_t_1);
13343 __pyx_t_2 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13344 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13345 __pyx_v___pyx_result->start = __pyx_t_2;
13346 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13347 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13348 __PYX_ERR(2, 12, __pyx_L1_error)
13349 }
13350 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 5, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13351 __Pyx_GOTREF(__pyx_t_1);
13352 __pyx_t_3 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_3 == (double)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13353 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13354 __pyx_v___pyx_result->sum_data = __pyx_t_3;
13355 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13356 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13357 __PYX_ERR(2, 12, __pyx_L1_error)
13358 }
13359 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 6, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13360 __Pyx_GOTREF(__pyx_t_1);
13361 __pyx_t_3 = __pyx_PyFloat_AsDouble(__pyx_t_1); if (unlikely((__pyx_t_3 == (double)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13362 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13363 __pyx_v___pyx_result->sum_squares = __pyx_t_3;
13364 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13365 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13366 __PYX_ERR(2, 12, __pyx_L1_error)
13367 }
13368 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 7, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13369 __Pyx_GOTREF(__pyx_t_1);
13370 __pyx_t_2 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13371 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13372 __pyx_v___pyx_result->valid_count = __pyx_t_2;
13373
13374 /* "(tree fragment)":13
13375 * cdef __pyx_unpickle_SummaryBlock__set_state(SummaryBlock __pyx_result, tuple __pyx_state):
13376 * __pyx_result.chrom_id = __pyx_state[0]; __pyx_result.end = __pyx_state[1]; __pyx_result.max_val = __pyx_state[2]; __pyx_result.min_val = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13377 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
13378 * __pyx_result.__dict__.update(__pyx_state[8])
13379 */
13380 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13381 PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
13382 __PYX_ERR(2, 13, __pyx_L1_error)
13383 }
13384 __pyx_t_5 = PyTuple_GET_SIZE(__pyx_v___pyx_state); if (unlikely(__pyx_t_5 == ((Py_ssize_t)-1))) __PYX_ERR(2, 13, __pyx_L1_error)
13385 __pyx_t_6 = ((__pyx_t_5 > 8) != 0);
13386 if (__pyx_t_6) {
13387 } else {
13388 __pyx_t_4 = __pyx_t_6;
13389 goto __pyx_L4_bool_binop_done;
13390 }
13391 __pyx_t_6 = __Pyx_HasAttr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(__pyx_t_6 == ((int)-1))) __PYX_ERR(2, 13, __pyx_L1_error)
13392 __pyx_t_7 = (__pyx_t_6 != 0);
13393 __pyx_t_4 = __pyx_t_7;
13394 __pyx_L4_bool_binop_done:;
13395 if (__pyx_t_4) {
13396
13397 /* "(tree fragment)":14
13398 * __pyx_result.chrom_id = __pyx_state[0]; __pyx_result.end = __pyx_state[1]; __pyx_result.max_val = __pyx_state[2]; __pyx_result.min_val = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13399 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'):
13400 * __pyx_result.__dict__.update(__pyx_state[8]) # <<<<<<<<<<<<<<
13401 */
13402 __pyx_t_8 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 14, __pyx_L1_error)
13403 __Pyx_GOTREF(__pyx_t_8);
13404 __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_t_8, __pyx_n_s_update); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 14, __pyx_L1_error)
13405 __Pyx_GOTREF(__pyx_t_9);
13406 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
13407 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13408 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13409 __PYX_ERR(2, 14, __pyx_L1_error)
13410 }
13411 __pyx_t_8 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 8, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 14, __pyx_L1_error)
13412 __Pyx_GOTREF(__pyx_t_8);
13413 __pyx_t_10 = NULL;
13414 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_9))) {
13415 __pyx_t_10 = PyMethod_GET_SELF(__pyx_t_9);
13416 if (likely(__pyx_t_10)) {
13417 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_9);
13418 __Pyx_INCREF(__pyx_t_10);
13419 __Pyx_INCREF(function);
13420 __Pyx_DECREF_SET(__pyx_t_9, function);
13421 }
13422 }
13423 __pyx_t_1 = (__pyx_t_10) ? __Pyx_PyObject_Call2Args(__pyx_t_9, __pyx_t_10, __pyx_t_8) : __Pyx_PyObject_CallOneArg(__pyx_t_9, __pyx_t_8);
13424 __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
13425 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
13426 if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 14, __pyx_L1_error)
13427 __Pyx_GOTREF(__pyx_t_1);
13428 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
13429 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13430
13431 /* "(tree fragment)":13
13432 * cdef __pyx_unpickle_SummaryBlock__set_state(SummaryBlock __pyx_result, tuple __pyx_state):
13433 * __pyx_result.chrom_id = __pyx_state[0]; __pyx_result.end = __pyx_state[1]; __pyx_result.max_val = __pyx_state[2]; __pyx_result.min_val = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13434 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
13435 * __pyx_result.__dict__.update(__pyx_state[8])
13436 */
13437 }
13438
13439 /* "(tree fragment)":11
13440 * __pyx_unpickle_SummaryBlock__set_state(<SummaryBlock> __pyx_result, __pyx_state)
13441 * return __pyx_result
13442 * cdef __pyx_unpickle_SummaryBlock__set_state(SummaryBlock __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
13443 * __pyx_result.chrom_id = __pyx_state[0]; __pyx_result.end = __pyx_state[1]; __pyx_result.max_val = __pyx_state[2]; __pyx_result.min_val = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13444 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'):
13445 */
13446
13447 /* function exit code */
13448 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
13449 goto __pyx_L0;
13450 __pyx_L1_error:;
13451 __Pyx_XDECREF(__pyx_t_1);
13452 __Pyx_XDECREF(__pyx_t_8);
13453 __Pyx_XDECREF(__pyx_t_9);
13454 __Pyx_XDECREF(__pyx_t_10);
13455 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_SummaryBlock__set_state", __pyx_clineno, __pyx_lineno, __pyx_filename);
13456 __pyx_r = 0;
13457 __pyx_L0:;
13458 __Pyx_XGIVEREF(__pyx_r);
13459 __Pyx_RefNannyFinishContext();
13460 return __pyx_r;
13461 }
13462
13463 /* "(tree fragment)":1
13464 * def __pyx_unpickle_SummarizedData(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
13465 * cdef object __pyx_PickleError
13466 * cdef object __pyx_result
13467 */
13468
13469 /* Python wrapper */
13470 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_3__pyx_unpickle_SummarizedData(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
13471 static PyMethodDef __pyx_mdef_2bx_3bbi_8bbi_file_3__pyx_unpickle_SummarizedData = {"__pyx_unpickle_SummarizedData", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_3__pyx_unpickle_SummarizedData, METH_VARARGS|METH_KEYWORDS, 0};
__pyx_pw_2bx_3bbi_8bbi_file_3__pyx_unpickle_SummarizedData(PyObject * __pyx_self,PyObject * __pyx_args,PyObject * __pyx_kwds)13472 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_3__pyx_unpickle_SummarizedData(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
13473 PyObject *__pyx_v___pyx_type = 0;
13474 long __pyx_v___pyx_checksum;
13475 PyObject *__pyx_v___pyx_state = 0;
13476 int __pyx_lineno = 0;
13477 const char *__pyx_filename = NULL;
13478 int __pyx_clineno = 0;
13479 PyObject *__pyx_r = 0;
13480 __Pyx_RefNannyDeclarations
13481 __Pyx_RefNannySetupContext("__pyx_unpickle_SummarizedData (wrapper)", 0);
13482 {
13483 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_type,&__pyx_n_s_pyx_checksum,&__pyx_n_s_pyx_state,0};
13484 PyObject* values[3] = {0,0,0};
13485 if (unlikely(__pyx_kwds)) {
13486 Py_ssize_t kw_args;
13487 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
13488 switch (pos_args) {
13489 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
13490 CYTHON_FALLTHROUGH;
13491 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
13492 CYTHON_FALLTHROUGH;
13493 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
13494 CYTHON_FALLTHROUGH;
13495 case 0: break;
13496 default: goto __pyx_L5_argtuple_error;
13497 }
13498 kw_args = PyDict_Size(__pyx_kwds);
13499 switch (pos_args) {
13500 case 0:
13501 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_type)) != 0)) kw_args--;
13502 else goto __pyx_L5_argtuple_error;
13503 CYTHON_FALLTHROUGH;
13504 case 1:
13505 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_checksum)) != 0)) kw_args--;
13506 else {
13507 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_SummarizedData", 1, 3, 3, 1); __PYX_ERR(2, 1, __pyx_L3_error)
13508 }
13509 CYTHON_FALLTHROUGH;
13510 case 2:
13511 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_state)) != 0)) kw_args--;
13512 else {
13513 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_SummarizedData", 1, 3, 3, 2); __PYX_ERR(2, 1, __pyx_L3_error)
13514 }
13515 }
13516 if (unlikely(kw_args > 0)) {
13517 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_unpickle_SummarizedData") < 0)) __PYX_ERR(2, 1, __pyx_L3_error)
13518 }
13519 } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
13520 goto __pyx_L5_argtuple_error;
13521 } else {
13522 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
13523 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
13524 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
13525 }
13526 __pyx_v___pyx_type = values[0];
13527 __pyx_v___pyx_checksum = __Pyx_PyInt_As_long(values[1]); if (unlikely((__pyx_v___pyx_checksum == (long)-1) && PyErr_Occurred())) __PYX_ERR(2, 1, __pyx_L3_error)
13528 __pyx_v___pyx_state = values[2];
13529 }
13530 goto __pyx_L4_argument_unpacking_done;
13531 __pyx_L5_argtuple_error:;
13532 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_SummarizedData", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(2, 1, __pyx_L3_error)
13533 __pyx_L3_error:;
13534 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_SummarizedData", __pyx_clineno, __pyx_lineno, __pyx_filename);
13535 __Pyx_RefNannyFinishContext();
13536 return NULL;
13537 __pyx_L4_argument_unpacking_done:;
13538 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_2__pyx_unpickle_SummarizedData(__pyx_self, __pyx_v___pyx_type, __pyx_v___pyx_checksum, __pyx_v___pyx_state);
13539
13540 /* function exit code */
13541 __Pyx_RefNannyFinishContext();
13542 return __pyx_r;
13543 }
13544
__pyx_pf_2bx_3bbi_8bbi_file_2__pyx_unpickle_SummarizedData(CYTHON_UNUSED PyObject * __pyx_self,PyObject * __pyx_v___pyx_type,long __pyx_v___pyx_checksum,PyObject * __pyx_v___pyx_state)13545 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_2__pyx_unpickle_SummarizedData(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state) {
13546 PyObject *__pyx_v___pyx_PickleError = 0;
13547 PyObject *__pyx_v___pyx_result = 0;
13548 PyObject *__pyx_r = NULL;
13549 __Pyx_RefNannyDeclarations
13550 int __pyx_t_1;
13551 PyObject *__pyx_t_2 = NULL;
13552 PyObject *__pyx_t_3 = NULL;
13553 PyObject *__pyx_t_4 = NULL;
13554 PyObject *__pyx_t_5 = NULL;
13555 int __pyx_t_6;
13556 int __pyx_lineno = 0;
13557 const char *__pyx_filename = NULL;
13558 int __pyx_clineno = 0;
13559 __Pyx_RefNannySetupContext("__pyx_unpickle_SummarizedData", 0);
13560
13561 /* "(tree fragment)":4
13562 * cdef object __pyx_PickleError
13563 * cdef object __pyx_result
13564 * if __pyx_checksum != 0xf78375f: # <<<<<<<<<<<<<<
13565 * from pickle import PickleError as __pyx_PickleError
13566 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xf78375f = (end, max_val, min_val, size, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13567 */
13568 __pyx_t_1 = ((__pyx_v___pyx_checksum != 0xf78375f) != 0);
13569 if (__pyx_t_1) {
13570
13571 /* "(tree fragment)":5
13572 * cdef object __pyx_result
13573 * if __pyx_checksum != 0xf78375f:
13574 * from pickle import PickleError as __pyx_PickleError # <<<<<<<<<<<<<<
13575 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xf78375f = (end, max_val, min_val, size, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13576 * __pyx_result = SummarizedData.__new__(__pyx_type)
13577 */
13578 __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
13579 __Pyx_GOTREF(__pyx_t_2);
13580 __Pyx_INCREF(__pyx_n_s_PickleError);
13581 __Pyx_GIVEREF(__pyx_n_s_PickleError);
13582 PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_PickleError);
13583 __pyx_t_3 = __Pyx_Import(__pyx_n_s_pickle, __pyx_t_2, -1); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 5, __pyx_L1_error)
13584 __Pyx_GOTREF(__pyx_t_3);
13585 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13586 __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_n_s_PickleError); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
13587 __Pyx_GOTREF(__pyx_t_2);
13588 __Pyx_INCREF(__pyx_t_2);
13589 __pyx_v___pyx_PickleError = __pyx_t_2;
13590 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13591 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
13592
13593 /* "(tree fragment)":6
13594 * if __pyx_checksum != 0xf78375f:
13595 * from pickle import PickleError as __pyx_PickleError
13596 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xf78375f = (end, max_val, min_val, size, start, sum_data, sum_squares, valid_count))" % __pyx_checksum) # <<<<<<<<<<<<<<
13597 * __pyx_result = SummarizedData.__new__(__pyx_type)
13598 * if __pyx_state is not None:
13599 */
13600 __pyx_t_2 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 6, __pyx_L1_error)
13601 __Pyx_GOTREF(__pyx_t_2);
13602 __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Incompatible_checksums_s_vs_0xf7, __pyx_t_2); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 6, __pyx_L1_error)
13603 __Pyx_GOTREF(__pyx_t_4);
13604 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13605 __Pyx_INCREF(__pyx_v___pyx_PickleError);
13606 __pyx_t_2 = __pyx_v___pyx_PickleError; __pyx_t_5 = NULL;
13607 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_2))) {
13608 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_2);
13609 if (likely(__pyx_t_5)) {
13610 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
13611 __Pyx_INCREF(__pyx_t_5);
13612 __Pyx_INCREF(function);
13613 __Pyx_DECREF_SET(__pyx_t_2, function);
13614 }
13615 }
13616 __pyx_t_3 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_5, __pyx_t_4) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_4);
13617 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
13618 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
13619 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 6, __pyx_L1_error)
13620 __Pyx_GOTREF(__pyx_t_3);
13621 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13622 __Pyx_Raise(__pyx_t_3, 0, 0, 0);
13623 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
13624 __PYX_ERR(2, 6, __pyx_L1_error)
13625
13626 /* "(tree fragment)":4
13627 * cdef object __pyx_PickleError
13628 * cdef object __pyx_result
13629 * if __pyx_checksum != 0xf78375f: # <<<<<<<<<<<<<<
13630 * from pickle import PickleError as __pyx_PickleError
13631 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xf78375f = (end, max_val, min_val, size, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13632 */
13633 }
13634
13635 /* "(tree fragment)":7
13636 * from pickle import PickleError as __pyx_PickleError
13637 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xf78375f = (end, max_val, min_val, size, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13638 * __pyx_result = SummarizedData.__new__(__pyx_type) # <<<<<<<<<<<<<<
13639 * if __pyx_state is not None:
13640 * __pyx_unpickle_SummarizedData__set_state(<SummarizedData> __pyx_result, __pyx_state)
13641 */
13642 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_ptype_2bx_3bbi_8bbi_file_SummarizedData), __pyx_n_s_new); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 7, __pyx_L1_error)
13643 __Pyx_GOTREF(__pyx_t_2);
13644 __pyx_t_4 = NULL;
13645 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
13646 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_2);
13647 if (likely(__pyx_t_4)) {
13648 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
13649 __Pyx_INCREF(__pyx_t_4);
13650 __Pyx_INCREF(function);
13651 __Pyx_DECREF_SET(__pyx_t_2, function);
13652 }
13653 }
13654 __pyx_t_3 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_4, __pyx_v___pyx_type) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_v___pyx_type);
13655 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
13656 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 7, __pyx_L1_error)
13657 __Pyx_GOTREF(__pyx_t_3);
13658 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
13659 __pyx_v___pyx_result = __pyx_t_3;
13660 __pyx_t_3 = 0;
13661
13662 /* "(tree fragment)":8
13663 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xf78375f = (end, max_val, min_val, size, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13664 * __pyx_result = SummarizedData.__new__(__pyx_type)
13665 * if __pyx_state is not None: # <<<<<<<<<<<<<<
13666 * __pyx_unpickle_SummarizedData__set_state(<SummarizedData> __pyx_result, __pyx_state)
13667 * return __pyx_result
13668 */
13669 __pyx_t_1 = (__pyx_v___pyx_state != Py_None);
13670 __pyx_t_6 = (__pyx_t_1 != 0);
13671 if (__pyx_t_6) {
13672
13673 /* "(tree fragment)":9
13674 * __pyx_result = SummarizedData.__new__(__pyx_type)
13675 * if __pyx_state is not None:
13676 * __pyx_unpickle_SummarizedData__set_state(<SummarizedData> __pyx_result, __pyx_state) # <<<<<<<<<<<<<<
13677 * return __pyx_result
13678 * cdef __pyx_unpickle_SummarizedData__set_state(SummarizedData __pyx_result, tuple __pyx_state):
13679 */
13680 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 9, __pyx_L1_error)
13681 __pyx_t_3 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummarizedData__set_state(((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)__pyx_v___pyx_result), ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 9, __pyx_L1_error)
13682 __Pyx_GOTREF(__pyx_t_3);
13683 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
13684
13685 /* "(tree fragment)":8
13686 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xf78375f = (end, max_val, min_val, size, start, sum_data, sum_squares, valid_count))" % __pyx_checksum)
13687 * __pyx_result = SummarizedData.__new__(__pyx_type)
13688 * if __pyx_state is not None: # <<<<<<<<<<<<<<
13689 * __pyx_unpickle_SummarizedData__set_state(<SummarizedData> __pyx_result, __pyx_state)
13690 * return __pyx_result
13691 */
13692 }
13693
13694 /* "(tree fragment)":10
13695 * if __pyx_state is not None:
13696 * __pyx_unpickle_SummarizedData__set_state(<SummarizedData> __pyx_result, __pyx_state)
13697 * return __pyx_result # <<<<<<<<<<<<<<
13698 * cdef __pyx_unpickle_SummarizedData__set_state(SummarizedData __pyx_result, tuple __pyx_state):
13699 * __pyx_result.end = __pyx_state[0]; __pyx_result.max_val = __pyx_state[1]; __pyx_result.min_val = __pyx_state[2]; __pyx_result.size = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13700 */
13701 __Pyx_XDECREF(__pyx_r);
13702 __Pyx_INCREF(__pyx_v___pyx_result);
13703 __pyx_r = __pyx_v___pyx_result;
13704 goto __pyx_L0;
13705
13706 /* "(tree fragment)":1
13707 * def __pyx_unpickle_SummarizedData(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
13708 * cdef object __pyx_PickleError
13709 * cdef object __pyx_result
13710 */
13711
13712 /* function exit code */
13713 __pyx_L1_error:;
13714 __Pyx_XDECREF(__pyx_t_2);
13715 __Pyx_XDECREF(__pyx_t_3);
13716 __Pyx_XDECREF(__pyx_t_4);
13717 __Pyx_XDECREF(__pyx_t_5);
13718 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_SummarizedData", __pyx_clineno, __pyx_lineno, __pyx_filename);
13719 __pyx_r = NULL;
13720 __pyx_L0:;
13721 __Pyx_XDECREF(__pyx_v___pyx_PickleError);
13722 __Pyx_XDECREF(__pyx_v___pyx_result);
13723 __Pyx_XGIVEREF(__pyx_r);
13724 __Pyx_RefNannyFinishContext();
13725 return __pyx_r;
13726 }
13727
13728 /* "(tree fragment)":11
13729 * __pyx_unpickle_SummarizedData__set_state(<SummarizedData> __pyx_result, __pyx_state)
13730 * return __pyx_result
13731 * cdef __pyx_unpickle_SummarizedData__set_state(SummarizedData __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
13732 * __pyx_result.end = __pyx_state[0]; __pyx_result.max_val = __pyx_state[1]; __pyx_result.min_val = __pyx_state[2]; __pyx_result.size = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13733 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'):
13734 */
13735
__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummarizedData__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData * __pyx_v___pyx_result,PyObject * __pyx_v___pyx_state)13736 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_SummarizedData__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *__pyx_v___pyx_result, PyObject *__pyx_v___pyx_state) {
13737 PyObject *__pyx_r = NULL;
13738 __Pyx_RefNannyDeclarations
13739 PyObject *__pyx_t_1 = NULL;
13740 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_2;
13741 int __pyx_t_3;
13742 int __pyx_t_4;
13743 Py_ssize_t __pyx_t_5;
13744 int __pyx_t_6;
13745 int __pyx_t_7;
13746 PyObject *__pyx_t_8 = NULL;
13747 PyObject *__pyx_t_9 = NULL;
13748 PyObject *__pyx_t_10 = NULL;
13749 int __pyx_lineno = 0;
13750 const char *__pyx_filename = NULL;
13751 int __pyx_clineno = 0;
13752 __Pyx_RefNannySetupContext("__pyx_unpickle_SummarizedData__set_state", 0);
13753
13754 /* "(tree fragment)":12
13755 * return __pyx_result
13756 * cdef __pyx_unpickle_SummarizedData__set_state(SummarizedData __pyx_result, tuple __pyx_state):
13757 * __pyx_result.end = __pyx_state[0]; __pyx_result.max_val = __pyx_state[1]; __pyx_result.min_val = __pyx_state[2]; __pyx_result.size = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7] # <<<<<<<<<<<<<<
13758 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'):
13759 * __pyx_result.__dict__.update(__pyx_state[8])
13760 */
13761 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13762 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13763 __PYX_ERR(2, 12, __pyx_L1_error)
13764 }
13765 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13766 __Pyx_GOTREF(__pyx_t_1);
13767 __pyx_t_2 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13768 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13769 __pyx_v___pyx_result->end = __pyx_t_2;
13770 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13771 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13772 __PYX_ERR(2, 12, __pyx_L1_error)
13773 }
13774 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13775 __Pyx_GOTREF(__pyx_t_1);
13776 if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(2, 12, __pyx_L1_error)
13777 __Pyx_GIVEREF(__pyx_t_1);
13778 __Pyx_GOTREF(__pyx_v___pyx_result->max_val);
13779 __Pyx_DECREF(((PyObject *)__pyx_v___pyx_result->max_val));
13780 __pyx_v___pyx_result->max_val = ((PyArrayObject *)__pyx_t_1);
13781 __pyx_t_1 = 0;
13782 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13783 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13784 __PYX_ERR(2, 12, __pyx_L1_error)
13785 }
13786 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13787 __Pyx_GOTREF(__pyx_t_1);
13788 if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(2, 12, __pyx_L1_error)
13789 __Pyx_GIVEREF(__pyx_t_1);
13790 __Pyx_GOTREF(__pyx_v___pyx_result->min_val);
13791 __Pyx_DECREF(((PyObject *)__pyx_v___pyx_result->min_val));
13792 __pyx_v___pyx_result->min_val = ((PyArrayObject *)__pyx_t_1);
13793 __pyx_t_1 = 0;
13794 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13795 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13796 __PYX_ERR(2, 12, __pyx_L1_error)
13797 }
13798 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13799 __Pyx_GOTREF(__pyx_t_1);
13800 __pyx_t_3 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13801 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13802 __pyx_v___pyx_result->size = __pyx_t_3;
13803 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13804 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13805 __PYX_ERR(2, 12, __pyx_L1_error)
13806 }
13807 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 4, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13808 __Pyx_GOTREF(__pyx_t_1);
13809 __pyx_t_2 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
13810 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13811 __pyx_v___pyx_result->start = __pyx_t_2;
13812 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13813 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13814 __PYX_ERR(2, 12, __pyx_L1_error)
13815 }
13816 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 5, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13817 __Pyx_GOTREF(__pyx_t_1);
13818 if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(2, 12, __pyx_L1_error)
13819 __Pyx_GIVEREF(__pyx_t_1);
13820 __Pyx_GOTREF(__pyx_v___pyx_result->sum_data);
13821 __Pyx_DECREF(((PyObject *)__pyx_v___pyx_result->sum_data));
13822 __pyx_v___pyx_result->sum_data = ((PyArrayObject *)__pyx_t_1);
13823 __pyx_t_1 = 0;
13824 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13825 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13826 __PYX_ERR(2, 12, __pyx_L1_error)
13827 }
13828 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 6, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13829 __Pyx_GOTREF(__pyx_t_1);
13830 if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(2, 12, __pyx_L1_error)
13831 __Pyx_GIVEREF(__pyx_t_1);
13832 __Pyx_GOTREF(__pyx_v___pyx_result->sum_squares);
13833 __Pyx_DECREF(((PyObject *)__pyx_v___pyx_result->sum_squares));
13834 __pyx_v___pyx_result->sum_squares = ((PyArrayObject *)__pyx_t_1);
13835 __pyx_t_1 = 0;
13836 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13837 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13838 __PYX_ERR(2, 12, __pyx_L1_error)
13839 }
13840 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 7, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
13841 __Pyx_GOTREF(__pyx_t_1);
13842 if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(2, 12, __pyx_L1_error)
13843 __Pyx_GIVEREF(__pyx_t_1);
13844 __Pyx_GOTREF(__pyx_v___pyx_result->valid_count);
13845 __Pyx_DECREF(((PyObject *)__pyx_v___pyx_result->valid_count));
13846 __pyx_v___pyx_result->valid_count = ((PyArrayObject *)__pyx_t_1);
13847 __pyx_t_1 = 0;
13848
13849 /* "(tree fragment)":13
13850 * cdef __pyx_unpickle_SummarizedData__set_state(SummarizedData __pyx_result, tuple __pyx_state):
13851 * __pyx_result.end = __pyx_state[0]; __pyx_result.max_val = __pyx_state[1]; __pyx_result.min_val = __pyx_state[2]; __pyx_result.size = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13852 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
13853 * __pyx_result.__dict__.update(__pyx_state[8])
13854 */
13855 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13856 PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
13857 __PYX_ERR(2, 13, __pyx_L1_error)
13858 }
13859 __pyx_t_5 = PyTuple_GET_SIZE(__pyx_v___pyx_state); if (unlikely(__pyx_t_5 == ((Py_ssize_t)-1))) __PYX_ERR(2, 13, __pyx_L1_error)
13860 __pyx_t_6 = ((__pyx_t_5 > 8) != 0);
13861 if (__pyx_t_6) {
13862 } else {
13863 __pyx_t_4 = __pyx_t_6;
13864 goto __pyx_L4_bool_binop_done;
13865 }
13866 __pyx_t_6 = __Pyx_HasAttr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(__pyx_t_6 == ((int)-1))) __PYX_ERR(2, 13, __pyx_L1_error)
13867 __pyx_t_7 = (__pyx_t_6 != 0);
13868 __pyx_t_4 = __pyx_t_7;
13869 __pyx_L4_bool_binop_done:;
13870 if (__pyx_t_4) {
13871
13872 /* "(tree fragment)":14
13873 * __pyx_result.end = __pyx_state[0]; __pyx_result.max_val = __pyx_state[1]; __pyx_result.min_val = __pyx_state[2]; __pyx_result.size = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13874 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'):
13875 * __pyx_result.__dict__.update(__pyx_state[8]) # <<<<<<<<<<<<<<
13876 */
13877 __pyx_t_8 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 14, __pyx_L1_error)
13878 __Pyx_GOTREF(__pyx_t_8);
13879 __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_t_8, __pyx_n_s_update); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 14, __pyx_L1_error)
13880 __Pyx_GOTREF(__pyx_t_9);
13881 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
13882 if (unlikely(__pyx_v___pyx_state == Py_None)) {
13883 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
13884 __PYX_ERR(2, 14, __pyx_L1_error)
13885 }
13886 __pyx_t_8 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 8, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 14, __pyx_L1_error)
13887 __Pyx_GOTREF(__pyx_t_8);
13888 __pyx_t_10 = NULL;
13889 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_9))) {
13890 __pyx_t_10 = PyMethod_GET_SELF(__pyx_t_9);
13891 if (likely(__pyx_t_10)) {
13892 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_9);
13893 __Pyx_INCREF(__pyx_t_10);
13894 __Pyx_INCREF(function);
13895 __Pyx_DECREF_SET(__pyx_t_9, function);
13896 }
13897 }
13898 __pyx_t_1 = (__pyx_t_10) ? __Pyx_PyObject_Call2Args(__pyx_t_9, __pyx_t_10, __pyx_t_8) : __Pyx_PyObject_CallOneArg(__pyx_t_9, __pyx_t_8);
13899 __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
13900 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
13901 if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 14, __pyx_L1_error)
13902 __Pyx_GOTREF(__pyx_t_1);
13903 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
13904 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
13905
13906 /* "(tree fragment)":13
13907 * cdef __pyx_unpickle_SummarizedData__set_state(SummarizedData __pyx_result, tuple __pyx_state):
13908 * __pyx_result.end = __pyx_state[0]; __pyx_result.max_val = __pyx_state[1]; __pyx_result.min_val = __pyx_state[2]; __pyx_result.size = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13909 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
13910 * __pyx_result.__dict__.update(__pyx_state[8])
13911 */
13912 }
13913
13914 /* "(tree fragment)":11
13915 * __pyx_unpickle_SummarizedData__set_state(<SummarizedData> __pyx_result, __pyx_state)
13916 * return __pyx_result
13917 * cdef __pyx_unpickle_SummarizedData__set_state(SummarizedData __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
13918 * __pyx_result.end = __pyx_state[0]; __pyx_result.max_val = __pyx_state[1]; __pyx_result.min_val = __pyx_state[2]; __pyx_result.size = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
13919 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'):
13920 */
13921
13922 /* function exit code */
13923 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
13924 goto __pyx_L0;
13925 __pyx_L1_error:;
13926 __Pyx_XDECREF(__pyx_t_1);
13927 __Pyx_XDECREF(__pyx_t_8);
13928 __Pyx_XDECREF(__pyx_t_9);
13929 __Pyx_XDECREF(__pyx_t_10);
13930 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_SummarizedData__set_state", __pyx_clineno, __pyx_lineno, __pyx_filename);
13931 __pyx_r = 0;
13932 __pyx_L0:;
13933 __Pyx_XGIVEREF(__pyx_r);
13934 __Pyx_RefNannyFinishContext();
13935 return __pyx_r;
13936 }
13937
13938 /* "(tree fragment)":1
13939 * def __pyx_unpickle_BlockHandler(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
13940 * cdef object __pyx_PickleError
13941 * cdef object __pyx_result
13942 */
13943
13944 /* Python wrapper */
13945 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_5__pyx_unpickle_BlockHandler(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
13946 static PyMethodDef __pyx_mdef_2bx_3bbi_8bbi_file_5__pyx_unpickle_BlockHandler = {"__pyx_unpickle_BlockHandler", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_5__pyx_unpickle_BlockHandler, METH_VARARGS|METH_KEYWORDS, 0};
__pyx_pw_2bx_3bbi_8bbi_file_5__pyx_unpickle_BlockHandler(PyObject * __pyx_self,PyObject * __pyx_args,PyObject * __pyx_kwds)13947 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_5__pyx_unpickle_BlockHandler(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
13948 PyObject *__pyx_v___pyx_type = 0;
13949 long __pyx_v___pyx_checksum;
13950 PyObject *__pyx_v___pyx_state = 0;
13951 int __pyx_lineno = 0;
13952 const char *__pyx_filename = NULL;
13953 int __pyx_clineno = 0;
13954 PyObject *__pyx_r = 0;
13955 __Pyx_RefNannyDeclarations
13956 __Pyx_RefNannySetupContext("__pyx_unpickle_BlockHandler (wrapper)", 0);
13957 {
13958 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_type,&__pyx_n_s_pyx_checksum,&__pyx_n_s_pyx_state,0};
13959 PyObject* values[3] = {0,0,0};
13960 if (unlikely(__pyx_kwds)) {
13961 Py_ssize_t kw_args;
13962 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
13963 switch (pos_args) {
13964 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
13965 CYTHON_FALLTHROUGH;
13966 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
13967 CYTHON_FALLTHROUGH;
13968 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
13969 CYTHON_FALLTHROUGH;
13970 case 0: break;
13971 default: goto __pyx_L5_argtuple_error;
13972 }
13973 kw_args = PyDict_Size(__pyx_kwds);
13974 switch (pos_args) {
13975 case 0:
13976 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_type)) != 0)) kw_args--;
13977 else goto __pyx_L5_argtuple_error;
13978 CYTHON_FALLTHROUGH;
13979 case 1:
13980 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_checksum)) != 0)) kw_args--;
13981 else {
13982 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_BlockHandler", 1, 3, 3, 1); __PYX_ERR(2, 1, __pyx_L3_error)
13983 }
13984 CYTHON_FALLTHROUGH;
13985 case 2:
13986 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_state)) != 0)) kw_args--;
13987 else {
13988 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_BlockHandler", 1, 3, 3, 2); __PYX_ERR(2, 1, __pyx_L3_error)
13989 }
13990 }
13991 if (unlikely(kw_args > 0)) {
13992 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_unpickle_BlockHandler") < 0)) __PYX_ERR(2, 1, __pyx_L3_error)
13993 }
13994 } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
13995 goto __pyx_L5_argtuple_error;
13996 } else {
13997 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
13998 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
13999 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
14000 }
14001 __pyx_v___pyx_type = values[0];
14002 __pyx_v___pyx_checksum = __Pyx_PyInt_As_long(values[1]); if (unlikely((__pyx_v___pyx_checksum == (long)-1) && PyErr_Occurred())) __PYX_ERR(2, 1, __pyx_L3_error)
14003 __pyx_v___pyx_state = values[2];
14004 }
14005 goto __pyx_L4_argument_unpacking_done;
14006 __pyx_L5_argtuple_error:;
14007 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_BlockHandler", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(2, 1, __pyx_L3_error)
14008 __pyx_L3_error:;
14009 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_BlockHandler", __pyx_clineno, __pyx_lineno, __pyx_filename);
14010 __Pyx_RefNannyFinishContext();
14011 return NULL;
14012 __pyx_L4_argument_unpacking_done:;
14013 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_4__pyx_unpickle_BlockHandler(__pyx_self, __pyx_v___pyx_type, __pyx_v___pyx_checksum, __pyx_v___pyx_state);
14014
14015 /* function exit code */
14016 __Pyx_RefNannyFinishContext();
14017 return __pyx_r;
14018 }
14019
__pyx_pf_2bx_3bbi_8bbi_file_4__pyx_unpickle_BlockHandler(CYTHON_UNUSED PyObject * __pyx_self,PyObject * __pyx_v___pyx_type,long __pyx_v___pyx_checksum,PyObject * __pyx_v___pyx_state)14020 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_4__pyx_unpickle_BlockHandler(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state) {
14021 PyObject *__pyx_v___pyx_PickleError = 0;
14022 PyObject *__pyx_v___pyx_result = 0;
14023 PyObject *__pyx_r = NULL;
14024 __Pyx_RefNannyDeclarations
14025 int __pyx_t_1;
14026 PyObject *__pyx_t_2 = NULL;
14027 PyObject *__pyx_t_3 = NULL;
14028 PyObject *__pyx_t_4 = NULL;
14029 PyObject *__pyx_t_5 = NULL;
14030 int __pyx_t_6;
14031 int __pyx_lineno = 0;
14032 const char *__pyx_filename = NULL;
14033 int __pyx_clineno = 0;
14034 __Pyx_RefNannySetupContext("__pyx_unpickle_BlockHandler", 0);
14035
14036 /* "(tree fragment)":4
14037 * cdef object __pyx_PickleError
14038 * cdef object __pyx_result
14039 * if __pyx_checksum != 0xd41d8cd: # <<<<<<<<<<<<<<
14040 * from pickle import PickleError as __pyx_PickleError
14041 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xd41d8cd = ())" % __pyx_checksum)
14042 */
14043 __pyx_t_1 = ((__pyx_v___pyx_checksum != 0xd41d8cd) != 0);
14044 if (__pyx_t_1) {
14045
14046 /* "(tree fragment)":5
14047 * cdef object __pyx_result
14048 * if __pyx_checksum != 0xd41d8cd:
14049 * from pickle import PickleError as __pyx_PickleError # <<<<<<<<<<<<<<
14050 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xd41d8cd = ())" % __pyx_checksum)
14051 * __pyx_result = BlockHandler.__new__(__pyx_type)
14052 */
14053 __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
14054 __Pyx_GOTREF(__pyx_t_2);
14055 __Pyx_INCREF(__pyx_n_s_PickleError);
14056 __Pyx_GIVEREF(__pyx_n_s_PickleError);
14057 PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_PickleError);
14058 __pyx_t_3 = __Pyx_Import(__pyx_n_s_pickle, __pyx_t_2, -1); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 5, __pyx_L1_error)
14059 __Pyx_GOTREF(__pyx_t_3);
14060 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14061 __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_n_s_PickleError); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
14062 __Pyx_GOTREF(__pyx_t_2);
14063 __Pyx_INCREF(__pyx_t_2);
14064 __pyx_v___pyx_PickleError = __pyx_t_2;
14065 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14066 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
14067
14068 /* "(tree fragment)":6
14069 * if __pyx_checksum != 0xd41d8cd:
14070 * from pickle import PickleError as __pyx_PickleError
14071 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xd41d8cd = ())" % __pyx_checksum) # <<<<<<<<<<<<<<
14072 * __pyx_result = BlockHandler.__new__(__pyx_type)
14073 * if __pyx_state is not None:
14074 */
14075 __pyx_t_2 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 6, __pyx_L1_error)
14076 __Pyx_GOTREF(__pyx_t_2);
14077 __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Incompatible_checksums_s_vs_0xd4, __pyx_t_2); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 6, __pyx_L1_error)
14078 __Pyx_GOTREF(__pyx_t_4);
14079 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14080 __Pyx_INCREF(__pyx_v___pyx_PickleError);
14081 __pyx_t_2 = __pyx_v___pyx_PickleError; __pyx_t_5 = NULL;
14082 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_2))) {
14083 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_2);
14084 if (likely(__pyx_t_5)) {
14085 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
14086 __Pyx_INCREF(__pyx_t_5);
14087 __Pyx_INCREF(function);
14088 __Pyx_DECREF_SET(__pyx_t_2, function);
14089 }
14090 }
14091 __pyx_t_3 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_5, __pyx_t_4) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_4);
14092 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
14093 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
14094 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 6, __pyx_L1_error)
14095 __Pyx_GOTREF(__pyx_t_3);
14096 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14097 __Pyx_Raise(__pyx_t_3, 0, 0, 0);
14098 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
14099 __PYX_ERR(2, 6, __pyx_L1_error)
14100
14101 /* "(tree fragment)":4
14102 * cdef object __pyx_PickleError
14103 * cdef object __pyx_result
14104 * if __pyx_checksum != 0xd41d8cd: # <<<<<<<<<<<<<<
14105 * from pickle import PickleError as __pyx_PickleError
14106 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xd41d8cd = ())" % __pyx_checksum)
14107 */
14108 }
14109
14110 /* "(tree fragment)":7
14111 * from pickle import PickleError as __pyx_PickleError
14112 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xd41d8cd = ())" % __pyx_checksum)
14113 * __pyx_result = BlockHandler.__new__(__pyx_type) # <<<<<<<<<<<<<<
14114 * if __pyx_state is not None:
14115 * __pyx_unpickle_BlockHandler__set_state(<BlockHandler> __pyx_result, __pyx_state)
14116 */
14117 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_ptype_2bx_3bbi_8bbi_file_BlockHandler), __pyx_n_s_new); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 7, __pyx_L1_error)
14118 __Pyx_GOTREF(__pyx_t_2);
14119 __pyx_t_4 = NULL;
14120 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
14121 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_2);
14122 if (likely(__pyx_t_4)) {
14123 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
14124 __Pyx_INCREF(__pyx_t_4);
14125 __Pyx_INCREF(function);
14126 __Pyx_DECREF_SET(__pyx_t_2, function);
14127 }
14128 }
14129 __pyx_t_3 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_4, __pyx_v___pyx_type) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_v___pyx_type);
14130 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
14131 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 7, __pyx_L1_error)
14132 __Pyx_GOTREF(__pyx_t_3);
14133 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14134 __pyx_v___pyx_result = __pyx_t_3;
14135 __pyx_t_3 = 0;
14136
14137 /* "(tree fragment)":8
14138 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xd41d8cd = ())" % __pyx_checksum)
14139 * __pyx_result = BlockHandler.__new__(__pyx_type)
14140 * if __pyx_state is not None: # <<<<<<<<<<<<<<
14141 * __pyx_unpickle_BlockHandler__set_state(<BlockHandler> __pyx_result, __pyx_state)
14142 * return __pyx_result
14143 */
14144 __pyx_t_1 = (__pyx_v___pyx_state != Py_None);
14145 __pyx_t_6 = (__pyx_t_1 != 0);
14146 if (__pyx_t_6) {
14147
14148 /* "(tree fragment)":9
14149 * __pyx_result = BlockHandler.__new__(__pyx_type)
14150 * if __pyx_state is not None:
14151 * __pyx_unpickle_BlockHandler__set_state(<BlockHandler> __pyx_result, __pyx_state) # <<<<<<<<<<<<<<
14152 * return __pyx_result
14153 * cdef __pyx_unpickle_BlockHandler__set_state(BlockHandler __pyx_result, tuple __pyx_state):
14154 */
14155 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 9, __pyx_L1_error)
14156 __pyx_t_3 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BlockHandler__set_state(((struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *)__pyx_v___pyx_result), ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 9, __pyx_L1_error)
14157 __Pyx_GOTREF(__pyx_t_3);
14158 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
14159
14160 /* "(tree fragment)":8
14161 * raise __pyx_PickleError("Incompatible checksums (%s vs 0xd41d8cd = ())" % __pyx_checksum)
14162 * __pyx_result = BlockHandler.__new__(__pyx_type)
14163 * if __pyx_state is not None: # <<<<<<<<<<<<<<
14164 * __pyx_unpickle_BlockHandler__set_state(<BlockHandler> __pyx_result, __pyx_state)
14165 * return __pyx_result
14166 */
14167 }
14168
14169 /* "(tree fragment)":10
14170 * if __pyx_state is not None:
14171 * __pyx_unpickle_BlockHandler__set_state(<BlockHandler> __pyx_result, __pyx_state)
14172 * return __pyx_result # <<<<<<<<<<<<<<
14173 * cdef __pyx_unpickle_BlockHandler__set_state(BlockHandler __pyx_result, tuple __pyx_state):
14174 * if len(__pyx_state) > 0 and hasattr(__pyx_result, '__dict__'):
14175 */
14176 __Pyx_XDECREF(__pyx_r);
14177 __Pyx_INCREF(__pyx_v___pyx_result);
14178 __pyx_r = __pyx_v___pyx_result;
14179 goto __pyx_L0;
14180
14181 /* "(tree fragment)":1
14182 * def __pyx_unpickle_BlockHandler(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
14183 * cdef object __pyx_PickleError
14184 * cdef object __pyx_result
14185 */
14186
14187 /* function exit code */
14188 __pyx_L1_error:;
14189 __Pyx_XDECREF(__pyx_t_2);
14190 __Pyx_XDECREF(__pyx_t_3);
14191 __Pyx_XDECREF(__pyx_t_4);
14192 __Pyx_XDECREF(__pyx_t_5);
14193 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_BlockHandler", __pyx_clineno, __pyx_lineno, __pyx_filename);
14194 __pyx_r = NULL;
14195 __pyx_L0:;
14196 __Pyx_XDECREF(__pyx_v___pyx_PickleError);
14197 __Pyx_XDECREF(__pyx_v___pyx_result);
14198 __Pyx_XGIVEREF(__pyx_r);
14199 __Pyx_RefNannyFinishContext();
14200 return __pyx_r;
14201 }
14202
14203 /* "(tree fragment)":11
14204 * __pyx_unpickle_BlockHandler__set_state(<BlockHandler> __pyx_result, __pyx_state)
14205 * return __pyx_result
14206 * cdef __pyx_unpickle_BlockHandler__set_state(BlockHandler __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
14207 * if len(__pyx_state) > 0 and hasattr(__pyx_result, '__dict__'):
14208 * __pyx_result.__dict__.update(__pyx_state[0])
14209 */
14210
__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BlockHandler__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler * __pyx_v___pyx_result,PyObject * __pyx_v___pyx_state)14211 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BlockHandler__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *__pyx_v___pyx_result, PyObject *__pyx_v___pyx_state) {
14212 PyObject *__pyx_r = NULL;
14213 __Pyx_RefNannyDeclarations
14214 int __pyx_t_1;
14215 Py_ssize_t __pyx_t_2;
14216 int __pyx_t_3;
14217 int __pyx_t_4;
14218 PyObject *__pyx_t_5 = NULL;
14219 PyObject *__pyx_t_6 = NULL;
14220 PyObject *__pyx_t_7 = NULL;
14221 PyObject *__pyx_t_8 = NULL;
14222 int __pyx_lineno = 0;
14223 const char *__pyx_filename = NULL;
14224 int __pyx_clineno = 0;
14225 __Pyx_RefNannySetupContext("__pyx_unpickle_BlockHandler__set_state", 0);
14226
14227 /* "(tree fragment)":12
14228 * return __pyx_result
14229 * cdef __pyx_unpickle_BlockHandler__set_state(BlockHandler __pyx_result, tuple __pyx_state):
14230 * if len(__pyx_state) > 0 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
14231 * __pyx_result.__dict__.update(__pyx_state[0])
14232 */
14233 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14234 PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
14235 __PYX_ERR(2, 12, __pyx_L1_error)
14236 }
14237 __pyx_t_2 = PyTuple_GET_SIZE(__pyx_v___pyx_state); if (unlikely(__pyx_t_2 == ((Py_ssize_t)-1))) __PYX_ERR(2, 12, __pyx_L1_error)
14238 __pyx_t_3 = ((__pyx_t_2 > 0) != 0);
14239 if (__pyx_t_3) {
14240 } else {
14241 __pyx_t_1 = __pyx_t_3;
14242 goto __pyx_L4_bool_binop_done;
14243 }
14244 __pyx_t_3 = __Pyx_HasAttr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(2, 12, __pyx_L1_error)
14245 __pyx_t_4 = (__pyx_t_3 != 0);
14246 __pyx_t_1 = __pyx_t_4;
14247 __pyx_L4_bool_binop_done:;
14248 if (__pyx_t_1) {
14249
14250 /* "(tree fragment)":13
14251 * cdef __pyx_unpickle_BlockHandler__set_state(BlockHandler __pyx_result, tuple __pyx_state):
14252 * if len(__pyx_state) > 0 and hasattr(__pyx_result, '__dict__'):
14253 * __pyx_result.__dict__.update(__pyx_state[0]) # <<<<<<<<<<<<<<
14254 */
14255 __pyx_t_6 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(!__pyx_t_6)) __PYX_ERR(2, 13, __pyx_L1_error)
14256 __Pyx_GOTREF(__pyx_t_6);
14257 __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_update); if (unlikely(!__pyx_t_7)) __PYX_ERR(2, 13, __pyx_L1_error)
14258 __Pyx_GOTREF(__pyx_t_7);
14259 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
14260 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14261 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14262 __PYX_ERR(2, 13, __pyx_L1_error)
14263 }
14264 __pyx_t_6 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_6)) __PYX_ERR(2, 13, __pyx_L1_error)
14265 __Pyx_GOTREF(__pyx_t_6);
14266 __pyx_t_8 = NULL;
14267 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_7))) {
14268 __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_7);
14269 if (likely(__pyx_t_8)) {
14270 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
14271 __Pyx_INCREF(__pyx_t_8);
14272 __Pyx_INCREF(function);
14273 __Pyx_DECREF_SET(__pyx_t_7, function);
14274 }
14275 }
14276 __pyx_t_5 = (__pyx_t_8) ? __Pyx_PyObject_Call2Args(__pyx_t_7, __pyx_t_8, __pyx_t_6) : __Pyx_PyObject_CallOneArg(__pyx_t_7, __pyx_t_6);
14277 __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
14278 __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
14279 if (unlikely(!__pyx_t_5)) __PYX_ERR(2, 13, __pyx_L1_error)
14280 __Pyx_GOTREF(__pyx_t_5);
14281 __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
14282 __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
14283
14284 /* "(tree fragment)":12
14285 * return __pyx_result
14286 * cdef __pyx_unpickle_BlockHandler__set_state(BlockHandler __pyx_result, tuple __pyx_state):
14287 * if len(__pyx_state) > 0 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
14288 * __pyx_result.__dict__.update(__pyx_state[0])
14289 */
14290 }
14291
14292 /* "(tree fragment)":11
14293 * __pyx_unpickle_BlockHandler__set_state(<BlockHandler> __pyx_result, __pyx_state)
14294 * return __pyx_result
14295 * cdef __pyx_unpickle_BlockHandler__set_state(BlockHandler __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
14296 * if len(__pyx_state) > 0 and hasattr(__pyx_result, '__dict__'):
14297 * __pyx_result.__dict__.update(__pyx_state[0])
14298 */
14299
14300 /* function exit code */
14301 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
14302 goto __pyx_L0;
14303 __pyx_L1_error:;
14304 __Pyx_XDECREF(__pyx_t_5);
14305 __Pyx_XDECREF(__pyx_t_6);
14306 __Pyx_XDECREF(__pyx_t_7);
14307 __Pyx_XDECREF(__pyx_t_8);
14308 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_BlockHandler__set_state", __pyx_clineno, __pyx_lineno, __pyx_filename);
14309 __pyx_r = 0;
14310 __pyx_L0:;
14311 __Pyx_XGIVEREF(__pyx_r);
14312 __Pyx_RefNannyFinishContext();
14313 return __pyx_r;
14314 }
14315
14316 /* "(tree fragment)":1
14317 * def __pyx_unpickle_BBIFile(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
14318 * cdef object __pyx_PickleError
14319 * cdef object __pyx_result
14320 */
14321
14322 /* Python wrapper */
14323 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7__pyx_unpickle_BBIFile(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
14324 static PyMethodDef __pyx_mdef_2bx_3bbi_8bbi_file_7__pyx_unpickle_BBIFile = {"__pyx_unpickle_BBIFile", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_7__pyx_unpickle_BBIFile, METH_VARARGS|METH_KEYWORDS, 0};
__pyx_pw_2bx_3bbi_8bbi_file_7__pyx_unpickle_BBIFile(PyObject * __pyx_self,PyObject * __pyx_args,PyObject * __pyx_kwds)14325 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_7__pyx_unpickle_BBIFile(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
14326 PyObject *__pyx_v___pyx_type = 0;
14327 long __pyx_v___pyx_checksum;
14328 PyObject *__pyx_v___pyx_state = 0;
14329 int __pyx_lineno = 0;
14330 const char *__pyx_filename = NULL;
14331 int __pyx_clineno = 0;
14332 PyObject *__pyx_r = 0;
14333 __Pyx_RefNannyDeclarations
14334 __Pyx_RefNannySetupContext("__pyx_unpickle_BBIFile (wrapper)", 0);
14335 {
14336 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_type,&__pyx_n_s_pyx_checksum,&__pyx_n_s_pyx_state,0};
14337 PyObject* values[3] = {0,0,0};
14338 if (unlikely(__pyx_kwds)) {
14339 Py_ssize_t kw_args;
14340 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
14341 switch (pos_args) {
14342 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
14343 CYTHON_FALLTHROUGH;
14344 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
14345 CYTHON_FALLTHROUGH;
14346 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
14347 CYTHON_FALLTHROUGH;
14348 case 0: break;
14349 default: goto __pyx_L5_argtuple_error;
14350 }
14351 kw_args = PyDict_Size(__pyx_kwds);
14352 switch (pos_args) {
14353 case 0:
14354 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_type)) != 0)) kw_args--;
14355 else goto __pyx_L5_argtuple_error;
14356 CYTHON_FALLTHROUGH;
14357 case 1:
14358 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_checksum)) != 0)) kw_args--;
14359 else {
14360 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_BBIFile", 1, 3, 3, 1); __PYX_ERR(2, 1, __pyx_L3_error)
14361 }
14362 CYTHON_FALLTHROUGH;
14363 case 2:
14364 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_state)) != 0)) kw_args--;
14365 else {
14366 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_BBIFile", 1, 3, 3, 2); __PYX_ERR(2, 1, __pyx_L3_error)
14367 }
14368 }
14369 if (unlikely(kw_args > 0)) {
14370 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_unpickle_BBIFile") < 0)) __PYX_ERR(2, 1, __pyx_L3_error)
14371 }
14372 } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
14373 goto __pyx_L5_argtuple_error;
14374 } else {
14375 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
14376 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
14377 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
14378 }
14379 __pyx_v___pyx_type = values[0];
14380 __pyx_v___pyx_checksum = __Pyx_PyInt_As_long(values[1]); if (unlikely((__pyx_v___pyx_checksum == (long)-1) && PyErr_Occurred())) __PYX_ERR(2, 1, __pyx_L3_error)
14381 __pyx_v___pyx_state = values[2];
14382 }
14383 goto __pyx_L4_argument_unpacking_done;
14384 __pyx_L5_argtuple_error:;
14385 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_BBIFile", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(2, 1, __pyx_L3_error)
14386 __pyx_L3_error:;
14387 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_BBIFile", __pyx_clineno, __pyx_lineno, __pyx_filename);
14388 __Pyx_RefNannyFinishContext();
14389 return NULL;
14390 __pyx_L4_argument_unpacking_done:;
14391 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_6__pyx_unpickle_BBIFile(__pyx_self, __pyx_v___pyx_type, __pyx_v___pyx_checksum, __pyx_v___pyx_state);
14392
14393 /* function exit code */
14394 __Pyx_RefNannyFinishContext();
14395 return __pyx_r;
14396 }
14397
__pyx_pf_2bx_3bbi_8bbi_file_6__pyx_unpickle_BBIFile(CYTHON_UNUSED PyObject * __pyx_self,PyObject * __pyx_v___pyx_type,long __pyx_v___pyx_checksum,PyObject * __pyx_v___pyx_state)14398 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_6__pyx_unpickle_BBIFile(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state) {
14399 PyObject *__pyx_v___pyx_PickleError = 0;
14400 PyObject *__pyx_v___pyx_result = 0;
14401 PyObject *__pyx_r = NULL;
14402 __Pyx_RefNannyDeclarations
14403 int __pyx_t_1;
14404 PyObject *__pyx_t_2 = NULL;
14405 PyObject *__pyx_t_3 = NULL;
14406 PyObject *__pyx_t_4 = NULL;
14407 PyObject *__pyx_t_5 = NULL;
14408 int __pyx_t_6;
14409 int __pyx_lineno = 0;
14410 const char *__pyx_filename = NULL;
14411 int __pyx_clineno = 0;
14412 __Pyx_RefNannySetupContext("__pyx_unpickle_BBIFile", 0);
14413
14414 /* "(tree fragment)":4
14415 * cdef object __pyx_PickleError
14416 * cdef object __pyx_result
14417 * if __pyx_checksum != 0x5566878: # <<<<<<<<<<<<<<
14418 * from pickle import PickleError as __pyx_PickleError
14419 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x5566878 = (as_offset, chrom_bpt, chrom_tree_offset, defined_field_count, field_count, file, is_byteswapped, level_list, magic, reader, total_summary_offset, uncompress_buf_size, unzoomed_data_offset, unzoomed_index_offset, version, zoom_levels))" % __pyx_checksum)
14420 */
14421 __pyx_t_1 = ((__pyx_v___pyx_checksum != 0x5566878) != 0);
14422 if (__pyx_t_1) {
14423
14424 /* "(tree fragment)":5
14425 * cdef object __pyx_result
14426 * if __pyx_checksum != 0x5566878:
14427 * from pickle import PickleError as __pyx_PickleError # <<<<<<<<<<<<<<
14428 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x5566878 = (as_offset, chrom_bpt, chrom_tree_offset, defined_field_count, field_count, file, is_byteswapped, level_list, magic, reader, total_summary_offset, uncompress_buf_size, unzoomed_data_offset, unzoomed_index_offset, version, zoom_levels))" % __pyx_checksum)
14429 * __pyx_result = BBIFile.__new__(__pyx_type)
14430 */
14431 __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
14432 __Pyx_GOTREF(__pyx_t_2);
14433 __Pyx_INCREF(__pyx_n_s_PickleError);
14434 __Pyx_GIVEREF(__pyx_n_s_PickleError);
14435 PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_PickleError);
14436 __pyx_t_3 = __Pyx_Import(__pyx_n_s_pickle, __pyx_t_2, -1); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 5, __pyx_L1_error)
14437 __Pyx_GOTREF(__pyx_t_3);
14438 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14439 __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_n_s_PickleError); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
14440 __Pyx_GOTREF(__pyx_t_2);
14441 __Pyx_INCREF(__pyx_t_2);
14442 __pyx_v___pyx_PickleError = __pyx_t_2;
14443 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14444 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
14445
14446 /* "(tree fragment)":6
14447 * if __pyx_checksum != 0x5566878:
14448 * from pickle import PickleError as __pyx_PickleError
14449 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x5566878 = (as_offset, chrom_bpt, chrom_tree_offset, defined_field_count, field_count, file, is_byteswapped, level_list, magic, reader, total_summary_offset, uncompress_buf_size, unzoomed_data_offset, unzoomed_index_offset, version, zoom_levels))" % __pyx_checksum) # <<<<<<<<<<<<<<
14450 * __pyx_result = BBIFile.__new__(__pyx_type)
14451 * if __pyx_state is not None:
14452 */
14453 __pyx_t_2 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 6, __pyx_L1_error)
14454 __Pyx_GOTREF(__pyx_t_2);
14455 __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Incompatible_checksums_s_vs_0x55, __pyx_t_2); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 6, __pyx_L1_error)
14456 __Pyx_GOTREF(__pyx_t_4);
14457 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14458 __Pyx_INCREF(__pyx_v___pyx_PickleError);
14459 __pyx_t_2 = __pyx_v___pyx_PickleError; __pyx_t_5 = NULL;
14460 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_2))) {
14461 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_2);
14462 if (likely(__pyx_t_5)) {
14463 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
14464 __Pyx_INCREF(__pyx_t_5);
14465 __Pyx_INCREF(function);
14466 __Pyx_DECREF_SET(__pyx_t_2, function);
14467 }
14468 }
14469 __pyx_t_3 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_5, __pyx_t_4) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_4);
14470 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
14471 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
14472 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 6, __pyx_L1_error)
14473 __Pyx_GOTREF(__pyx_t_3);
14474 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14475 __Pyx_Raise(__pyx_t_3, 0, 0, 0);
14476 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
14477 __PYX_ERR(2, 6, __pyx_L1_error)
14478
14479 /* "(tree fragment)":4
14480 * cdef object __pyx_PickleError
14481 * cdef object __pyx_result
14482 * if __pyx_checksum != 0x5566878: # <<<<<<<<<<<<<<
14483 * from pickle import PickleError as __pyx_PickleError
14484 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x5566878 = (as_offset, chrom_bpt, chrom_tree_offset, defined_field_count, field_count, file, is_byteswapped, level_list, magic, reader, total_summary_offset, uncompress_buf_size, unzoomed_data_offset, unzoomed_index_offset, version, zoom_levels))" % __pyx_checksum)
14485 */
14486 }
14487
14488 /* "(tree fragment)":7
14489 * from pickle import PickleError as __pyx_PickleError
14490 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x5566878 = (as_offset, chrom_bpt, chrom_tree_offset, defined_field_count, field_count, file, is_byteswapped, level_list, magic, reader, total_summary_offset, uncompress_buf_size, unzoomed_data_offset, unzoomed_index_offset, version, zoom_levels))" % __pyx_checksum)
14491 * __pyx_result = BBIFile.__new__(__pyx_type) # <<<<<<<<<<<<<<
14492 * if __pyx_state is not None:
14493 * __pyx_unpickle_BBIFile__set_state(<BBIFile> __pyx_result, __pyx_state)
14494 */
14495 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_ptype_2bx_3bbi_8bbi_file_BBIFile), __pyx_n_s_new); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 7, __pyx_L1_error)
14496 __Pyx_GOTREF(__pyx_t_2);
14497 __pyx_t_4 = NULL;
14498 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
14499 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_2);
14500 if (likely(__pyx_t_4)) {
14501 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
14502 __Pyx_INCREF(__pyx_t_4);
14503 __Pyx_INCREF(function);
14504 __Pyx_DECREF_SET(__pyx_t_2, function);
14505 }
14506 }
14507 __pyx_t_3 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_4, __pyx_v___pyx_type) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_v___pyx_type);
14508 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
14509 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 7, __pyx_L1_error)
14510 __Pyx_GOTREF(__pyx_t_3);
14511 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14512 __pyx_v___pyx_result = __pyx_t_3;
14513 __pyx_t_3 = 0;
14514
14515 /* "(tree fragment)":8
14516 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x5566878 = (as_offset, chrom_bpt, chrom_tree_offset, defined_field_count, field_count, file, is_byteswapped, level_list, magic, reader, total_summary_offset, uncompress_buf_size, unzoomed_data_offset, unzoomed_index_offset, version, zoom_levels))" % __pyx_checksum)
14517 * __pyx_result = BBIFile.__new__(__pyx_type)
14518 * if __pyx_state is not None: # <<<<<<<<<<<<<<
14519 * __pyx_unpickle_BBIFile__set_state(<BBIFile> __pyx_result, __pyx_state)
14520 * return __pyx_result
14521 */
14522 __pyx_t_1 = (__pyx_v___pyx_state != Py_None);
14523 __pyx_t_6 = (__pyx_t_1 != 0);
14524 if (__pyx_t_6) {
14525
14526 /* "(tree fragment)":9
14527 * __pyx_result = BBIFile.__new__(__pyx_type)
14528 * if __pyx_state is not None:
14529 * __pyx_unpickle_BBIFile__set_state(<BBIFile> __pyx_result, __pyx_state) # <<<<<<<<<<<<<<
14530 * return __pyx_result
14531 * cdef __pyx_unpickle_BBIFile__set_state(BBIFile __pyx_result, tuple __pyx_state):
14532 */
14533 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 9, __pyx_L1_error)
14534 __pyx_t_3 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BBIFile__set_state(((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_v___pyx_result), ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 9, __pyx_L1_error)
14535 __Pyx_GOTREF(__pyx_t_3);
14536 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
14537
14538 /* "(tree fragment)":8
14539 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x5566878 = (as_offset, chrom_bpt, chrom_tree_offset, defined_field_count, field_count, file, is_byteswapped, level_list, magic, reader, total_summary_offset, uncompress_buf_size, unzoomed_data_offset, unzoomed_index_offset, version, zoom_levels))" % __pyx_checksum)
14540 * __pyx_result = BBIFile.__new__(__pyx_type)
14541 * if __pyx_state is not None: # <<<<<<<<<<<<<<
14542 * __pyx_unpickle_BBIFile__set_state(<BBIFile> __pyx_result, __pyx_state)
14543 * return __pyx_result
14544 */
14545 }
14546
14547 /* "(tree fragment)":10
14548 * if __pyx_state is not None:
14549 * __pyx_unpickle_BBIFile__set_state(<BBIFile> __pyx_result, __pyx_state)
14550 * return __pyx_result # <<<<<<<<<<<<<<
14551 * cdef __pyx_unpickle_BBIFile__set_state(BBIFile __pyx_result, tuple __pyx_state):
14552 * __pyx_result.as_offset = __pyx_state[0]; __pyx_result.chrom_bpt = __pyx_state[1]; __pyx_result.chrom_tree_offset = __pyx_state[2]; __pyx_result.defined_field_count = __pyx_state[3]; __pyx_result.field_count = __pyx_state[4]; __pyx_result.file = __pyx_state[5]; __pyx_result.is_byteswapped = __pyx_state[6]; __pyx_result.level_list = __pyx_state[7]; __pyx_result.magic = __pyx_state[8]; __pyx_result.reader = __pyx_state[9]; __pyx_result.total_summary_offset = __pyx_state[10]; __pyx_result.uncompress_buf_size = __pyx_state[11]; __pyx_result.unzoomed_data_offset = __pyx_state[12]; __pyx_result.unzoomed_index_offset = __pyx_state[13]; __pyx_result.version = __pyx_state[14]; __pyx_result.zoom_levels = __pyx_state[15]
14553 */
14554 __Pyx_XDECREF(__pyx_r);
14555 __Pyx_INCREF(__pyx_v___pyx_result);
14556 __pyx_r = __pyx_v___pyx_result;
14557 goto __pyx_L0;
14558
14559 /* "(tree fragment)":1
14560 * def __pyx_unpickle_BBIFile(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
14561 * cdef object __pyx_PickleError
14562 * cdef object __pyx_result
14563 */
14564
14565 /* function exit code */
14566 __pyx_L1_error:;
14567 __Pyx_XDECREF(__pyx_t_2);
14568 __Pyx_XDECREF(__pyx_t_3);
14569 __Pyx_XDECREF(__pyx_t_4);
14570 __Pyx_XDECREF(__pyx_t_5);
14571 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_BBIFile", __pyx_clineno, __pyx_lineno, __pyx_filename);
14572 __pyx_r = NULL;
14573 __pyx_L0:;
14574 __Pyx_XDECREF(__pyx_v___pyx_PickleError);
14575 __Pyx_XDECREF(__pyx_v___pyx_result);
14576 __Pyx_XGIVEREF(__pyx_r);
14577 __Pyx_RefNannyFinishContext();
14578 return __pyx_r;
14579 }
14580
14581 /* "(tree fragment)":11
14582 * __pyx_unpickle_BBIFile__set_state(<BBIFile> __pyx_result, __pyx_state)
14583 * return __pyx_result
14584 * cdef __pyx_unpickle_BBIFile__set_state(BBIFile __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
14585 * __pyx_result.as_offset = __pyx_state[0]; __pyx_result.chrom_bpt = __pyx_state[1]; __pyx_result.chrom_tree_offset = __pyx_state[2]; __pyx_result.defined_field_count = __pyx_state[3]; __pyx_result.field_count = __pyx_state[4]; __pyx_result.file = __pyx_state[5]; __pyx_result.is_byteswapped = __pyx_state[6]; __pyx_result.level_list = __pyx_state[7]; __pyx_result.magic = __pyx_state[8]; __pyx_result.reader = __pyx_state[9]; __pyx_result.total_summary_offset = __pyx_state[10]; __pyx_result.uncompress_buf_size = __pyx_state[11]; __pyx_result.unzoomed_data_offset = __pyx_state[12]; __pyx_result.unzoomed_index_offset = __pyx_state[13]; __pyx_result.version = __pyx_state[14]; __pyx_result.zoom_levels = __pyx_state[15]
14586 * if len(__pyx_state) > 16 and hasattr(__pyx_result, '__dict__'):
14587 */
14588
__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BBIFile__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile * __pyx_v___pyx_result,PyObject * __pyx_v___pyx_state)14589 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_BBIFile__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *__pyx_v___pyx_result, PyObject *__pyx_v___pyx_state) {
14590 PyObject *__pyx_r = NULL;
14591 __Pyx_RefNannyDeclarations
14592 PyObject *__pyx_t_1 = NULL;
14593 __pyx_t_2bx_3bbi_5types_bits64 __pyx_t_2;
14594 __pyx_t_2bx_3bbi_5types_bits16 __pyx_t_3;
14595 __pyx_t_2bx_3bbi_5types_boolean __pyx_t_4;
14596 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_5;
14597 int __pyx_t_6;
14598 Py_ssize_t __pyx_t_7;
14599 int __pyx_t_8;
14600 int __pyx_t_9;
14601 PyObject *__pyx_t_10 = NULL;
14602 PyObject *__pyx_t_11 = NULL;
14603 PyObject *__pyx_t_12 = NULL;
14604 int __pyx_lineno = 0;
14605 const char *__pyx_filename = NULL;
14606 int __pyx_clineno = 0;
14607 __Pyx_RefNannySetupContext("__pyx_unpickle_BBIFile__set_state", 0);
14608
14609 /* "(tree fragment)":12
14610 * return __pyx_result
14611 * cdef __pyx_unpickle_BBIFile__set_state(BBIFile __pyx_result, tuple __pyx_state):
14612 * __pyx_result.as_offset = __pyx_state[0]; __pyx_result.chrom_bpt = __pyx_state[1]; __pyx_result.chrom_tree_offset = __pyx_state[2]; __pyx_result.defined_field_count = __pyx_state[3]; __pyx_result.field_count = __pyx_state[4]; __pyx_result.file = __pyx_state[5]; __pyx_result.is_byteswapped = __pyx_state[6]; __pyx_result.level_list = __pyx_state[7]; __pyx_result.magic = __pyx_state[8]; __pyx_result.reader = __pyx_state[9]; __pyx_result.total_summary_offset = __pyx_state[10]; __pyx_result.uncompress_buf_size = __pyx_state[11]; __pyx_result.unzoomed_data_offset = __pyx_state[12]; __pyx_result.unzoomed_index_offset = __pyx_state[13]; __pyx_result.version = __pyx_state[14]; __pyx_result.zoom_levels = __pyx_state[15] # <<<<<<<<<<<<<<
14613 * if len(__pyx_state) > 16 and hasattr(__pyx_result, '__dict__'):
14614 * __pyx_result.__dict__.update(__pyx_state[16])
14615 */
14616 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14617 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14618 __PYX_ERR(2, 12, __pyx_L1_error)
14619 }
14620 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14621 __Pyx_GOTREF(__pyx_t_1);
14622 __pyx_t_2 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14623 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14624 __pyx_v___pyx_result->as_offset = __pyx_t_2;
14625 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14626 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14627 __PYX_ERR(2, 12, __pyx_L1_error)
14628 }
14629 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14630 __Pyx_GOTREF(__pyx_t_1);
14631 if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_2bx_3bbi_8bpt_file_BPTFile))))) __PYX_ERR(2, 12, __pyx_L1_error)
14632 __Pyx_GIVEREF(__pyx_t_1);
14633 __Pyx_GOTREF(__pyx_v___pyx_result->chrom_bpt);
14634 __Pyx_DECREF(((PyObject *)__pyx_v___pyx_result->chrom_bpt));
14635 __pyx_v___pyx_result->chrom_bpt = ((struct __pyx_obj_2bx_3bbi_8bpt_file_BPTFile *)__pyx_t_1);
14636 __pyx_t_1 = 0;
14637 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14638 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14639 __PYX_ERR(2, 12, __pyx_L1_error)
14640 }
14641 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14642 __Pyx_GOTREF(__pyx_t_1);
14643 __pyx_t_2 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14644 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14645 __pyx_v___pyx_result->chrom_tree_offset = __pyx_t_2;
14646 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14647 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14648 __PYX_ERR(2, 12, __pyx_L1_error)
14649 }
14650 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14651 __Pyx_GOTREF(__pyx_t_1);
14652 __pyx_t_3 = __Pyx_PyInt_As_unsigned_short(__pyx_t_1); if (unlikely((__pyx_t_3 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14653 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14654 __pyx_v___pyx_result->defined_field_count = __pyx_t_3;
14655 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14656 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14657 __PYX_ERR(2, 12, __pyx_L1_error)
14658 }
14659 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 4, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14660 __Pyx_GOTREF(__pyx_t_1);
14661 __pyx_t_3 = __Pyx_PyInt_As_unsigned_short(__pyx_t_1); if (unlikely((__pyx_t_3 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14662 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14663 __pyx_v___pyx_result->field_count = __pyx_t_3;
14664 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14665 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14666 __PYX_ERR(2, 12, __pyx_L1_error)
14667 }
14668 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 5, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14669 __Pyx_GOTREF(__pyx_t_1);
14670 __Pyx_GIVEREF(__pyx_t_1);
14671 __Pyx_GOTREF(__pyx_v___pyx_result->file);
14672 __Pyx_DECREF(__pyx_v___pyx_result->file);
14673 __pyx_v___pyx_result->file = __pyx_t_1;
14674 __pyx_t_1 = 0;
14675 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14676 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14677 __PYX_ERR(2, 12, __pyx_L1_error)
14678 }
14679 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 6, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14680 __Pyx_GOTREF(__pyx_t_1);
14681 __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14682 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14683 __pyx_v___pyx_result->is_byteswapped = __pyx_t_4;
14684 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14685 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14686 __PYX_ERR(2, 12, __pyx_L1_error)
14687 }
14688 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 7, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14689 __Pyx_GOTREF(__pyx_t_1);
14690 __Pyx_GIVEREF(__pyx_t_1);
14691 __Pyx_GOTREF(__pyx_v___pyx_result->level_list);
14692 __Pyx_DECREF(__pyx_v___pyx_result->level_list);
14693 __pyx_v___pyx_result->level_list = __pyx_t_1;
14694 __pyx_t_1 = 0;
14695 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14696 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14697 __PYX_ERR(2, 12, __pyx_L1_error)
14698 }
14699 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 8, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14700 __Pyx_GOTREF(__pyx_t_1);
14701 __pyx_t_5 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_5 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14702 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14703 __pyx_v___pyx_result->magic = __pyx_t_5;
14704 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14705 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14706 __PYX_ERR(2, 12, __pyx_L1_error)
14707 }
14708 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 9, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14709 __Pyx_GOTREF(__pyx_t_1);
14710 __Pyx_GIVEREF(__pyx_t_1);
14711 __Pyx_GOTREF(__pyx_v___pyx_result->reader);
14712 __Pyx_DECREF(__pyx_v___pyx_result->reader);
14713 __pyx_v___pyx_result->reader = __pyx_t_1;
14714 __pyx_t_1 = 0;
14715 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14716 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14717 __PYX_ERR(2, 12, __pyx_L1_error)
14718 }
14719 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 10, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14720 __Pyx_GOTREF(__pyx_t_1);
14721 __pyx_t_2 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14722 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14723 __pyx_v___pyx_result->total_summary_offset = __pyx_t_2;
14724 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14725 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14726 __PYX_ERR(2, 12, __pyx_L1_error)
14727 }
14728 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 11, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14729 __Pyx_GOTREF(__pyx_t_1);
14730 __pyx_t_5 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_5 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14731 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14732 __pyx_v___pyx_result->uncompress_buf_size = __pyx_t_5;
14733 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14734 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14735 __PYX_ERR(2, 12, __pyx_L1_error)
14736 }
14737 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 12, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14738 __Pyx_GOTREF(__pyx_t_1);
14739 __pyx_t_2 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14740 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14741 __pyx_v___pyx_result->unzoomed_data_offset = __pyx_t_2;
14742 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14743 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14744 __PYX_ERR(2, 12, __pyx_L1_error)
14745 }
14746 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 13, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14747 __Pyx_GOTREF(__pyx_t_1);
14748 __pyx_t_2 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14749 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14750 __pyx_v___pyx_result->unzoomed_index_offset = __pyx_t_2;
14751 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14752 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14753 __PYX_ERR(2, 12, __pyx_L1_error)
14754 }
14755 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 14, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14756 __Pyx_GOTREF(__pyx_t_1);
14757 __pyx_t_3 = __Pyx_PyInt_As_unsigned_short(__pyx_t_1); if (unlikely((__pyx_t_3 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14758 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14759 __pyx_v___pyx_result->version = __pyx_t_3;
14760 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14761 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14762 __PYX_ERR(2, 12, __pyx_L1_error)
14763 }
14764 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 15, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
14765 __Pyx_GOTREF(__pyx_t_1);
14766 __pyx_t_3 = __Pyx_PyInt_As_unsigned_short(__pyx_t_1); if (unlikely((__pyx_t_3 == (unsigned short)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
14767 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14768 __pyx_v___pyx_result->zoom_levels = __pyx_t_3;
14769
14770 /* "(tree fragment)":13
14771 * cdef __pyx_unpickle_BBIFile__set_state(BBIFile __pyx_result, tuple __pyx_state):
14772 * __pyx_result.as_offset = __pyx_state[0]; __pyx_result.chrom_bpt = __pyx_state[1]; __pyx_result.chrom_tree_offset = __pyx_state[2]; __pyx_result.defined_field_count = __pyx_state[3]; __pyx_result.field_count = __pyx_state[4]; __pyx_result.file = __pyx_state[5]; __pyx_result.is_byteswapped = __pyx_state[6]; __pyx_result.level_list = __pyx_state[7]; __pyx_result.magic = __pyx_state[8]; __pyx_result.reader = __pyx_state[9]; __pyx_result.total_summary_offset = __pyx_state[10]; __pyx_result.uncompress_buf_size = __pyx_state[11]; __pyx_result.unzoomed_data_offset = __pyx_state[12]; __pyx_result.unzoomed_index_offset = __pyx_state[13]; __pyx_result.version = __pyx_state[14]; __pyx_result.zoom_levels = __pyx_state[15]
14773 * if len(__pyx_state) > 16 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
14774 * __pyx_result.__dict__.update(__pyx_state[16])
14775 */
14776 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14777 PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
14778 __PYX_ERR(2, 13, __pyx_L1_error)
14779 }
14780 __pyx_t_7 = PyTuple_GET_SIZE(__pyx_v___pyx_state); if (unlikely(__pyx_t_7 == ((Py_ssize_t)-1))) __PYX_ERR(2, 13, __pyx_L1_error)
14781 __pyx_t_8 = ((__pyx_t_7 > 16) != 0);
14782 if (__pyx_t_8) {
14783 } else {
14784 __pyx_t_6 = __pyx_t_8;
14785 goto __pyx_L4_bool_binop_done;
14786 }
14787 __pyx_t_8 = __Pyx_HasAttr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(__pyx_t_8 == ((int)-1))) __PYX_ERR(2, 13, __pyx_L1_error)
14788 __pyx_t_9 = (__pyx_t_8 != 0);
14789 __pyx_t_6 = __pyx_t_9;
14790 __pyx_L4_bool_binop_done:;
14791 if (__pyx_t_6) {
14792
14793 /* "(tree fragment)":14
14794 * __pyx_result.as_offset = __pyx_state[0]; __pyx_result.chrom_bpt = __pyx_state[1]; __pyx_result.chrom_tree_offset = __pyx_state[2]; __pyx_result.defined_field_count = __pyx_state[3]; __pyx_result.field_count = __pyx_state[4]; __pyx_result.file = __pyx_state[5]; __pyx_result.is_byteswapped = __pyx_state[6]; __pyx_result.level_list = __pyx_state[7]; __pyx_result.magic = __pyx_state[8]; __pyx_result.reader = __pyx_state[9]; __pyx_result.total_summary_offset = __pyx_state[10]; __pyx_result.uncompress_buf_size = __pyx_state[11]; __pyx_result.unzoomed_data_offset = __pyx_state[12]; __pyx_result.unzoomed_index_offset = __pyx_state[13]; __pyx_result.version = __pyx_state[14]; __pyx_result.zoom_levels = __pyx_state[15]
14795 * if len(__pyx_state) > 16 and hasattr(__pyx_result, '__dict__'):
14796 * __pyx_result.__dict__.update(__pyx_state[16]) # <<<<<<<<<<<<<<
14797 */
14798 __pyx_t_10 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(!__pyx_t_10)) __PYX_ERR(2, 14, __pyx_L1_error)
14799 __Pyx_GOTREF(__pyx_t_10);
14800 __pyx_t_11 = __Pyx_PyObject_GetAttrStr(__pyx_t_10, __pyx_n_s_update); if (unlikely(!__pyx_t_11)) __PYX_ERR(2, 14, __pyx_L1_error)
14801 __Pyx_GOTREF(__pyx_t_11);
14802 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
14803 if (unlikely(__pyx_v___pyx_state == Py_None)) {
14804 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
14805 __PYX_ERR(2, 14, __pyx_L1_error)
14806 }
14807 __pyx_t_10 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 16, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_10)) __PYX_ERR(2, 14, __pyx_L1_error)
14808 __Pyx_GOTREF(__pyx_t_10);
14809 __pyx_t_12 = NULL;
14810 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_11))) {
14811 __pyx_t_12 = PyMethod_GET_SELF(__pyx_t_11);
14812 if (likely(__pyx_t_12)) {
14813 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_11);
14814 __Pyx_INCREF(__pyx_t_12);
14815 __Pyx_INCREF(function);
14816 __Pyx_DECREF_SET(__pyx_t_11, function);
14817 }
14818 }
14819 __pyx_t_1 = (__pyx_t_12) ? __Pyx_PyObject_Call2Args(__pyx_t_11, __pyx_t_12, __pyx_t_10) : __Pyx_PyObject_CallOneArg(__pyx_t_11, __pyx_t_10);
14820 __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
14821 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
14822 if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 14, __pyx_L1_error)
14823 __Pyx_GOTREF(__pyx_t_1);
14824 __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
14825 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
14826
14827 /* "(tree fragment)":13
14828 * cdef __pyx_unpickle_BBIFile__set_state(BBIFile __pyx_result, tuple __pyx_state):
14829 * __pyx_result.as_offset = __pyx_state[0]; __pyx_result.chrom_bpt = __pyx_state[1]; __pyx_result.chrom_tree_offset = __pyx_state[2]; __pyx_result.defined_field_count = __pyx_state[3]; __pyx_result.field_count = __pyx_state[4]; __pyx_result.file = __pyx_state[5]; __pyx_result.is_byteswapped = __pyx_state[6]; __pyx_result.level_list = __pyx_state[7]; __pyx_result.magic = __pyx_state[8]; __pyx_result.reader = __pyx_state[9]; __pyx_result.total_summary_offset = __pyx_state[10]; __pyx_result.uncompress_buf_size = __pyx_state[11]; __pyx_result.unzoomed_data_offset = __pyx_state[12]; __pyx_result.unzoomed_index_offset = __pyx_state[13]; __pyx_result.version = __pyx_state[14]; __pyx_result.zoom_levels = __pyx_state[15]
14830 * if len(__pyx_state) > 16 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
14831 * __pyx_result.__dict__.update(__pyx_state[16])
14832 */
14833 }
14834
14835 /* "(tree fragment)":11
14836 * __pyx_unpickle_BBIFile__set_state(<BBIFile> __pyx_result, __pyx_state)
14837 * return __pyx_result
14838 * cdef __pyx_unpickle_BBIFile__set_state(BBIFile __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
14839 * __pyx_result.as_offset = __pyx_state[0]; __pyx_result.chrom_bpt = __pyx_state[1]; __pyx_result.chrom_tree_offset = __pyx_state[2]; __pyx_result.defined_field_count = __pyx_state[3]; __pyx_result.field_count = __pyx_state[4]; __pyx_result.file = __pyx_state[5]; __pyx_result.is_byteswapped = __pyx_state[6]; __pyx_result.level_list = __pyx_state[7]; __pyx_result.magic = __pyx_state[8]; __pyx_result.reader = __pyx_state[9]; __pyx_result.total_summary_offset = __pyx_state[10]; __pyx_result.uncompress_buf_size = __pyx_state[11]; __pyx_result.unzoomed_data_offset = __pyx_state[12]; __pyx_result.unzoomed_index_offset = __pyx_state[13]; __pyx_result.version = __pyx_state[14]; __pyx_result.zoom_levels = __pyx_state[15]
14840 * if len(__pyx_state) > 16 and hasattr(__pyx_result, '__dict__'):
14841 */
14842
14843 /* function exit code */
14844 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
14845 goto __pyx_L0;
14846 __pyx_L1_error:;
14847 __Pyx_XDECREF(__pyx_t_1);
14848 __Pyx_XDECREF(__pyx_t_10);
14849 __Pyx_XDECREF(__pyx_t_11);
14850 __Pyx_XDECREF(__pyx_t_12);
14851 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_BBIFile__set_state", __pyx_clineno, __pyx_lineno, __pyx_filename);
14852 __pyx_r = 0;
14853 __pyx_L0:;
14854 __Pyx_XGIVEREF(__pyx_r);
14855 __Pyx_RefNannyFinishContext();
14856 return __pyx_r;
14857 }
14858
14859 /* "(tree fragment)":1
14860 * def __pyx_unpickle_ZoomLevel(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
14861 * cdef object __pyx_PickleError
14862 * cdef object __pyx_result
14863 */
14864
14865 /* Python wrapper */
14866 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9__pyx_unpickle_ZoomLevel(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
14867 static PyMethodDef __pyx_mdef_2bx_3bbi_8bbi_file_9__pyx_unpickle_ZoomLevel = {"__pyx_unpickle_ZoomLevel", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_9__pyx_unpickle_ZoomLevel, METH_VARARGS|METH_KEYWORDS, 0};
__pyx_pw_2bx_3bbi_8bbi_file_9__pyx_unpickle_ZoomLevel(PyObject * __pyx_self,PyObject * __pyx_args,PyObject * __pyx_kwds)14868 static PyObject *__pyx_pw_2bx_3bbi_8bbi_file_9__pyx_unpickle_ZoomLevel(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
14869 PyObject *__pyx_v___pyx_type = 0;
14870 long __pyx_v___pyx_checksum;
14871 PyObject *__pyx_v___pyx_state = 0;
14872 int __pyx_lineno = 0;
14873 const char *__pyx_filename = NULL;
14874 int __pyx_clineno = 0;
14875 PyObject *__pyx_r = 0;
14876 __Pyx_RefNannyDeclarations
14877 __Pyx_RefNannySetupContext("__pyx_unpickle_ZoomLevel (wrapper)", 0);
14878 {
14879 static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_type,&__pyx_n_s_pyx_checksum,&__pyx_n_s_pyx_state,0};
14880 PyObject* values[3] = {0,0,0};
14881 if (unlikely(__pyx_kwds)) {
14882 Py_ssize_t kw_args;
14883 const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
14884 switch (pos_args) {
14885 case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
14886 CYTHON_FALLTHROUGH;
14887 case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
14888 CYTHON_FALLTHROUGH;
14889 case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
14890 CYTHON_FALLTHROUGH;
14891 case 0: break;
14892 default: goto __pyx_L5_argtuple_error;
14893 }
14894 kw_args = PyDict_Size(__pyx_kwds);
14895 switch (pos_args) {
14896 case 0:
14897 if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_type)) != 0)) kw_args--;
14898 else goto __pyx_L5_argtuple_error;
14899 CYTHON_FALLTHROUGH;
14900 case 1:
14901 if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_checksum)) != 0)) kw_args--;
14902 else {
14903 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_ZoomLevel", 1, 3, 3, 1); __PYX_ERR(2, 1, __pyx_L3_error)
14904 }
14905 CYTHON_FALLTHROUGH;
14906 case 2:
14907 if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_state)) != 0)) kw_args--;
14908 else {
14909 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_ZoomLevel", 1, 3, 3, 2); __PYX_ERR(2, 1, __pyx_L3_error)
14910 }
14911 }
14912 if (unlikely(kw_args > 0)) {
14913 if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_unpickle_ZoomLevel") < 0)) __PYX_ERR(2, 1, __pyx_L3_error)
14914 }
14915 } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
14916 goto __pyx_L5_argtuple_error;
14917 } else {
14918 values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
14919 values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
14920 values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
14921 }
14922 __pyx_v___pyx_type = values[0];
14923 __pyx_v___pyx_checksum = __Pyx_PyInt_As_long(values[1]); if (unlikely((__pyx_v___pyx_checksum == (long)-1) && PyErr_Occurred())) __PYX_ERR(2, 1, __pyx_L3_error)
14924 __pyx_v___pyx_state = values[2];
14925 }
14926 goto __pyx_L4_argument_unpacking_done;
14927 __pyx_L5_argtuple_error:;
14928 __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_ZoomLevel", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(2, 1, __pyx_L3_error)
14929 __pyx_L3_error:;
14930 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_ZoomLevel", __pyx_clineno, __pyx_lineno, __pyx_filename);
14931 __Pyx_RefNannyFinishContext();
14932 return NULL;
14933 __pyx_L4_argument_unpacking_done:;
14934 __pyx_r = __pyx_pf_2bx_3bbi_8bbi_file_8__pyx_unpickle_ZoomLevel(__pyx_self, __pyx_v___pyx_type, __pyx_v___pyx_checksum, __pyx_v___pyx_state);
14935
14936 /* function exit code */
14937 __Pyx_RefNannyFinishContext();
14938 return __pyx_r;
14939 }
14940
__pyx_pf_2bx_3bbi_8bbi_file_8__pyx_unpickle_ZoomLevel(CYTHON_UNUSED PyObject * __pyx_self,PyObject * __pyx_v___pyx_type,long __pyx_v___pyx_checksum,PyObject * __pyx_v___pyx_state)14941 static PyObject *__pyx_pf_2bx_3bbi_8bbi_file_8__pyx_unpickle_ZoomLevel(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state) {
14942 PyObject *__pyx_v___pyx_PickleError = 0;
14943 PyObject *__pyx_v___pyx_result = 0;
14944 PyObject *__pyx_r = NULL;
14945 __Pyx_RefNannyDeclarations
14946 int __pyx_t_1;
14947 PyObject *__pyx_t_2 = NULL;
14948 PyObject *__pyx_t_3 = NULL;
14949 PyObject *__pyx_t_4 = NULL;
14950 PyObject *__pyx_t_5 = NULL;
14951 int __pyx_t_6;
14952 int __pyx_lineno = 0;
14953 const char *__pyx_filename = NULL;
14954 int __pyx_clineno = 0;
14955 __Pyx_RefNannySetupContext("__pyx_unpickle_ZoomLevel", 0);
14956
14957 /* "(tree fragment)":4
14958 * cdef object __pyx_PickleError
14959 * cdef object __pyx_result
14960 * if __pyx_checksum != 0x3665355: # <<<<<<<<<<<<<<
14961 * from pickle import PickleError as __pyx_PickleError
14962 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x3665355 = (bbi_file, data_offset, index_offset, item_count, reduction_level, reserved))" % __pyx_checksum)
14963 */
14964 __pyx_t_1 = ((__pyx_v___pyx_checksum != 0x3665355) != 0);
14965 if (__pyx_t_1) {
14966
14967 /* "(tree fragment)":5
14968 * cdef object __pyx_result
14969 * if __pyx_checksum != 0x3665355:
14970 * from pickle import PickleError as __pyx_PickleError # <<<<<<<<<<<<<<
14971 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x3665355 = (bbi_file, data_offset, index_offset, item_count, reduction_level, reserved))" % __pyx_checksum)
14972 * __pyx_result = ZoomLevel.__new__(__pyx_type)
14973 */
14974 __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
14975 __Pyx_GOTREF(__pyx_t_2);
14976 __Pyx_INCREF(__pyx_n_s_PickleError);
14977 __Pyx_GIVEREF(__pyx_n_s_PickleError);
14978 PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_PickleError);
14979 __pyx_t_3 = __Pyx_Import(__pyx_n_s_pickle, __pyx_t_2, -1); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 5, __pyx_L1_error)
14980 __Pyx_GOTREF(__pyx_t_3);
14981 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14982 __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_n_s_PickleError); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 5, __pyx_L1_error)
14983 __Pyx_GOTREF(__pyx_t_2);
14984 __Pyx_INCREF(__pyx_t_2);
14985 __pyx_v___pyx_PickleError = __pyx_t_2;
14986 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
14987 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
14988
14989 /* "(tree fragment)":6
14990 * if __pyx_checksum != 0x3665355:
14991 * from pickle import PickleError as __pyx_PickleError
14992 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x3665355 = (bbi_file, data_offset, index_offset, item_count, reduction_level, reserved))" % __pyx_checksum) # <<<<<<<<<<<<<<
14993 * __pyx_result = ZoomLevel.__new__(__pyx_type)
14994 * if __pyx_state is not None:
14995 */
14996 __pyx_t_2 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 6, __pyx_L1_error)
14997 __Pyx_GOTREF(__pyx_t_2);
14998 __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Incompatible_checksums_s_vs_0x36, __pyx_t_2); if (unlikely(!__pyx_t_4)) __PYX_ERR(2, 6, __pyx_L1_error)
14999 __Pyx_GOTREF(__pyx_t_4);
15000 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
15001 __Pyx_INCREF(__pyx_v___pyx_PickleError);
15002 __pyx_t_2 = __pyx_v___pyx_PickleError; __pyx_t_5 = NULL;
15003 if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_2))) {
15004 __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_2);
15005 if (likely(__pyx_t_5)) {
15006 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
15007 __Pyx_INCREF(__pyx_t_5);
15008 __Pyx_INCREF(function);
15009 __Pyx_DECREF_SET(__pyx_t_2, function);
15010 }
15011 }
15012 __pyx_t_3 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_5, __pyx_t_4) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_4);
15013 __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
15014 __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
15015 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 6, __pyx_L1_error)
15016 __Pyx_GOTREF(__pyx_t_3);
15017 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
15018 __Pyx_Raise(__pyx_t_3, 0, 0, 0);
15019 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
15020 __PYX_ERR(2, 6, __pyx_L1_error)
15021
15022 /* "(tree fragment)":4
15023 * cdef object __pyx_PickleError
15024 * cdef object __pyx_result
15025 * if __pyx_checksum != 0x3665355: # <<<<<<<<<<<<<<
15026 * from pickle import PickleError as __pyx_PickleError
15027 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x3665355 = (bbi_file, data_offset, index_offset, item_count, reduction_level, reserved))" % __pyx_checksum)
15028 */
15029 }
15030
15031 /* "(tree fragment)":7
15032 * from pickle import PickleError as __pyx_PickleError
15033 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x3665355 = (bbi_file, data_offset, index_offset, item_count, reduction_level, reserved))" % __pyx_checksum)
15034 * __pyx_result = ZoomLevel.__new__(__pyx_type) # <<<<<<<<<<<<<<
15035 * if __pyx_state is not None:
15036 * __pyx_unpickle_ZoomLevel__set_state(<ZoomLevel> __pyx_result, __pyx_state)
15037 */
15038 __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_ptype_2bx_3bbi_8bbi_file_ZoomLevel), __pyx_n_s_new); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 7, __pyx_L1_error)
15039 __Pyx_GOTREF(__pyx_t_2);
15040 __pyx_t_4 = NULL;
15041 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
15042 __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_2);
15043 if (likely(__pyx_t_4)) {
15044 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
15045 __Pyx_INCREF(__pyx_t_4);
15046 __Pyx_INCREF(function);
15047 __Pyx_DECREF_SET(__pyx_t_2, function);
15048 }
15049 }
15050 __pyx_t_3 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_4, __pyx_v___pyx_type) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_v___pyx_type);
15051 __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
15052 if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 7, __pyx_L1_error)
15053 __Pyx_GOTREF(__pyx_t_3);
15054 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
15055 __pyx_v___pyx_result = __pyx_t_3;
15056 __pyx_t_3 = 0;
15057
15058 /* "(tree fragment)":8
15059 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x3665355 = (bbi_file, data_offset, index_offset, item_count, reduction_level, reserved))" % __pyx_checksum)
15060 * __pyx_result = ZoomLevel.__new__(__pyx_type)
15061 * if __pyx_state is not None: # <<<<<<<<<<<<<<
15062 * __pyx_unpickle_ZoomLevel__set_state(<ZoomLevel> __pyx_result, __pyx_state)
15063 * return __pyx_result
15064 */
15065 __pyx_t_1 = (__pyx_v___pyx_state != Py_None);
15066 __pyx_t_6 = (__pyx_t_1 != 0);
15067 if (__pyx_t_6) {
15068
15069 /* "(tree fragment)":9
15070 * __pyx_result = ZoomLevel.__new__(__pyx_type)
15071 * if __pyx_state is not None:
15072 * __pyx_unpickle_ZoomLevel__set_state(<ZoomLevel> __pyx_result, __pyx_state) # <<<<<<<<<<<<<<
15073 * return __pyx_result
15074 * cdef __pyx_unpickle_ZoomLevel__set_state(ZoomLevel __pyx_result, tuple __pyx_state):
15075 */
15076 if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(2, 9, __pyx_L1_error)
15077 __pyx_t_3 = __pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_ZoomLevel__set_state(((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)__pyx_v___pyx_result), ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_3)) __PYX_ERR(2, 9, __pyx_L1_error)
15078 __Pyx_GOTREF(__pyx_t_3);
15079 __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
15080
15081 /* "(tree fragment)":8
15082 * raise __pyx_PickleError("Incompatible checksums (%s vs 0x3665355 = (bbi_file, data_offset, index_offset, item_count, reduction_level, reserved))" % __pyx_checksum)
15083 * __pyx_result = ZoomLevel.__new__(__pyx_type)
15084 * if __pyx_state is not None: # <<<<<<<<<<<<<<
15085 * __pyx_unpickle_ZoomLevel__set_state(<ZoomLevel> __pyx_result, __pyx_state)
15086 * return __pyx_result
15087 */
15088 }
15089
15090 /* "(tree fragment)":10
15091 * if __pyx_state is not None:
15092 * __pyx_unpickle_ZoomLevel__set_state(<ZoomLevel> __pyx_result, __pyx_state)
15093 * return __pyx_result # <<<<<<<<<<<<<<
15094 * cdef __pyx_unpickle_ZoomLevel__set_state(ZoomLevel __pyx_result, tuple __pyx_state):
15095 * __pyx_result.bbi_file = __pyx_state[0]; __pyx_result.data_offset = __pyx_state[1]; __pyx_result.index_offset = __pyx_state[2]; __pyx_result.item_count = __pyx_state[3]; __pyx_result.reduction_level = __pyx_state[4]; __pyx_result.reserved = __pyx_state[5]
15096 */
15097 __Pyx_XDECREF(__pyx_r);
15098 __Pyx_INCREF(__pyx_v___pyx_result);
15099 __pyx_r = __pyx_v___pyx_result;
15100 goto __pyx_L0;
15101
15102 /* "(tree fragment)":1
15103 * def __pyx_unpickle_ZoomLevel(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
15104 * cdef object __pyx_PickleError
15105 * cdef object __pyx_result
15106 */
15107
15108 /* function exit code */
15109 __pyx_L1_error:;
15110 __Pyx_XDECREF(__pyx_t_2);
15111 __Pyx_XDECREF(__pyx_t_3);
15112 __Pyx_XDECREF(__pyx_t_4);
15113 __Pyx_XDECREF(__pyx_t_5);
15114 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_ZoomLevel", __pyx_clineno, __pyx_lineno, __pyx_filename);
15115 __pyx_r = NULL;
15116 __pyx_L0:;
15117 __Pyx_XDECREF(__pyx_v___pyx_PickleError);
15118 __Pyx_XDECREF(__pyx_v___pyx_result);
15119 __Pyx_XGIVEREF(__pyx_r);
15120 __Pyx_RefNannyFinishContext();
15121 return __pyx_r;
15122 }
15123
15124 /* "(tree fragment)":11
15125 * __pyx_unpickle_ZoomLevel__set_state(<ZoomLevel> __pyx_result, __pyx_state)
15126 * return __pyx_result
15127 * cdef __pyx_unpickle_ZoomLevel__set_state(ZoomLevel __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
15128 * __pyx_result.bbi_file = __pyx_state[0]; __pyx_result.data_offset = __pyx_state[1]; __pyx_result.index_offset = __pyx_state[2]; __pyx_result.item_count = __pyx_state[3]; __pyx_result.reduction_level = __pyx_state[4]; __pyx_result.reserved = __pyx_state[5]
15129 * if len(__pyx_state) > 6 and hasattr(__pyx_result, '__dict__'):
15130 */
15131
__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_ZoomLevel__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel * __pyx_v___pyx_result,PyObject * __pyx_v___pyx_state)15132 static PyObject *__pyx_f_2bx_3bbi_8bbi_file___pyx_unpickle_ZoomLevel__set_state(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *__pyx_v___pyx_result, PyObject *__pyx_v___pyx_state) {
15133 PyObject *__pyx_r = NULL;
15134 __Pyx_RefNannyDeclarations
15135 PyObject *__pyx_t_1 = NULL;
15136 __pyx_t_2bx_3bbi_5types_bits64 __pyx_t_2;
15137 int __pyx_t_3;
15138 __pyx_t_2bx_3bbi_5types_bits32 __pyx_t_4;
15139 int __pyx_t_5;
15140 Py_ssize_t __pyx_t_6;
15141 int __pyx_t_7;
15142 int __pyx_t_8;
15143 PyObject *__pyx_t_9 = NULL;
15144 PyObject *__pyx_t_10 = NULL;
15145 PyObject *__pyx_t_11 = NULL;
15146 int __pyx_lineno = 0;
15147 const char *__pyx_filename = NULL;
15148 int __pyx_clineno = 0;
15149 __Pyx_RefNannySetupContext("__pyx_unpickle_ZoomLevel__set_state", 0);
15150
15151 /* "(tree fragment)":12
15152 * return __pyx_result
15153 * cdef __pyx_unpickle_ZoomLevel__set_state(ZoomLevel __pyx_result, tuple __pyx_state):
15154 * __pyx_result.bbi_file = __pyx_state[0]; __pyx_result.data_offset = __pyx_state[1]; __pyx_result.index_offset = __pyx_state[2]; __pyx_result.item_count = __pyx_state[3]; __pyx_result.reduction_level = __pyx_state[4]; __pyx_result.reserved = __pyx_state[5] # <<<<<<<<<<<<<<
15155 * if len(__pyx_state) > 6 and hasattr(__pyx_result, '__dict__'):
15156 * __pyx_result.__dict__.update(__pyx_state[6])
15157 */
15158 if (unlikely(__pyx_v___pyx_state == Py_None)) {
15159 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
15160 __PYX_ERR(2, 12, __pyx_L1_error)
15161 }
15162 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
15163 __Pyx_GOTREF(__pyx_t_1);
15164 if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_2bx_3bbi_8bbi_file_BBIFile))))) __PYX_ERR(2, 12, __pyx_L1_error)
15165 __Pyx_GIVEREF(__pyx_t_1);
15166 __Pyx_GOTREF(__pyx_v___pyx_result->bbi_file);
15167 __Pyx_DECREF(((PyObject *)__pyx_v___pyx_result->bbi_file));
15168 __pyx_v___pyx_result->bbi_file = ((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)__pyx_t_1);
15169 __pyx_t_1 = 0;
15170 if (unlikely(__pyx_v___pyx_state == Py_None)) {
15171 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
15172 __PYX_ERR(2, 12, __pyx_L1_error)
15173 }
15174 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
15175 __Pyx_GOTREF(__pyx_t_1);
15176 __pyx_t_2 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
15177 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
15178 __pyx_v___pyx_result->data_offset = __pyx_t_2;
15179 if (unlikely(__pyx_v___pyx_state == Py_None)) {
15180 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
15181 __PYX_ERR(2, 12, __pyx_L1_error)
15182 }
15183 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
15184 __Pyx_GOTREF(__pyx_t_1);
15185 __pyx_t_2 = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(__pyx_t_1); if (unlikely((__pyx_t_2 == (unsigned PY_LONG_LONG)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
15186 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
15187 __pyx_v___pyx_result->index_offset = __pyx_t_2;
15188 if (unlikely(__pyx_v___pyx_state == Py_None)) {
15189 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
15190 __PYX_ERR(2, 12, __pyx_L1_error)
15191 }
15192 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
15193 __Pyx_GOTREF(__pyx_t_1);
15194 __pyx_t_3 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
15195 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
15196 __pyx_v___pyx_result->item_count = __pyx_t_3;
15197 if (unlikely(__pyx_v___pyx_state == Py_None)) {
15198 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
15199 __PYX_ERR(2, 12, __pyx_L1_error)
15200 }
15201 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 4, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
15202 __Pyx_GOTREF(__pyx_t_1);
15203 __pyx_t_4 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_4 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
15204 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
15205 __pyx_v___pyx_result->reduction_level = __pyx_t_4;
15206 if (unlikely(__pyx_v___pyx_state == Py_None)) {
15207 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
15208 __PYX_ERR(2, 12, __pyx_L1_error)
15209 }
15210 __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 5, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 12, __pyx_L1_error)
15211 __Pyx_GOTREF(__pyx_t_1);
15212 __pyx_t_4 = __Pyx_PyInt_As_unsigned_int(__pyx_t_1); if (unlikely((__pyx_t_4 == (unsigned int)-1) && PyErr_Occurred())) __PYX_ERR(2, 12, __pyx_L1_error)
15213 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
15214 __pyx_v___pyx_result->reserved = __pyx_t_4;
15215
15216 /* "(tree fragment)":13
15217 * cdef __pyx_unpickle_ZoomLevel__set_state(ZoomLevel __pyx_result, tuple __pyx_state):
15218 * __pyx_result.bbi_file = __pyx_state[0]; __pyx_result.data_offset = __pyx_state[1]; __pyx_result.index_offset = __pyx_state[2]; __pyx_result.item_count = __pyx_state[3]; __pyx_result.reduction_level = __pyx_state[4]; __pyx_result.reserved = __pyx_state[5]
15219 * if len(__pyx_state) > 6 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
15220 * __pyx_result.__dict__.update(__pyx_state[6])
15221 */
15222 if (unlikely(__pyx_v___pyx_state == Py_None)) {
15223 PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
15224 __PYX_ERR(2, 13, __pyx_L1_error)
15225 }
15226 __pyx_t_6 = PyTuple_GET_SIZE(__pyx_v___pyx_state); if (unlikely(__pyx_t_6 == ((Py_ssize_t)-1))) __PYX_ERR(2, 13, __pyx_L1_error)
15227 __pyx_t_7 = ((__pyx_t_6 > 6) != 0);
15228 if (__pyx_t_7) {
15229 } else {
15230 __pyx_t_5 = __pyx_t_7;
15231 goto __pyx_L4_bool_binop_done;
15232 }
15233 __pyx_t_7 = __Pyx_HasAttr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(2, 13, __pyx_L1_error)
15234 __pyx_t_8 = (__pyx_t_7 != 0);
15235 __pyx_t_5 = __pyx_t_8;
15236 __pyx_L4_bool_binop_done:;
15237 if (__pyx_t_5) {
15238
15239 /* "(tree fragment)":14
15240 * __pyx_result.bbi_file = __pyx_state[0]; __pyx_result.data_offset = __pyx_state[1]; __pyx_result.index_offset = __pyx_state[2]; __pyx_result.item_count = __pyx_state[3]; __pyx_result.reduction_level = __pyx_state[4]; __pyx_result.reserved = __pyx_state[5]
15241 * if len(__pyx_state) > 6 and hasattr(__pyx_result, '__dict__'):
15242 * __pyx_result.__dict__.update(__pyx_state[6]) # <<<<<<<<<<<<<<
15243 */
15244 __pyx_t_9 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 14, __pyx_L1_error)
15245 __Pyx_GOTREF(__pyx_t_9);
15246 __pyx_t_10 = __Pyx_PyObject_GetAttrStr(__pyx_t_9, __pyx_n_s_update); if (unlikely(!__pyx_t_10)) __PYX_ERR(2, 14, __pyx_L1_error)
15247 __Pyx_GOTREF(__pyx_t_10);
15248 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
15249 if (unlikely(__pyx_v___pyx_state == Py_None)) {
15250 PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
15251 __PYX_ERR(2, 14, __pyx_L1_error)
15252 }
15253 __pyx_t_9 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 6, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_9)) __PYX_ERR(2, 14, __pyx_L1_error)
15254 __Pyx_GOTREF(__pyx_t_9);
15255 __pyx_t_11 = NULL;
15256 if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_10))) {
15257 __pyx_t_11 = PyMethod_GET_SELF(__pyx_t_10);
15258 if (likely(__pyx_t_11)) {
15259 PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_10);
15260 __Pyx_INCREF(__pyx_t_11);
15261 __Pyx_INCREF(function);
15262 __Pyx_DECREF_SET(__pyx_t_10, function);
15263 }
15264 }
15265 __pyx_t_1 = (__pyx_t_11) ? __Pyx_PyObject_Call2Args(__pyx_t_10, __pyx_t_11, __pyx_t_9) : __Pyx_PyObject_CallOneArg(__pyx_t_10, __pyx_t_9);
15266 __Pyx_XDECREF(__pyx_t_11); __pyx_t_11 = 0;
15267 __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
15268 if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 14, __pyx_L1_error)
15269 __Pyx_GOTREF(__pyx_t_1);
15270 __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
15271 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
15272
15273 /* "(tree fragment)":13
15274 * cdef __pyx_unpickle_ZoomLevel__set_state(ZoomLevel __pyx_result, tuple __pyx_state):
15275 * __pyx_result.bbi_file = __pyx_state[0]; __pyx_result.data_offset = __pyx_state[1]; __pyx_result.index_offset = __pyx_state[2]; __pyx_result.item_count = __pyx_state[3]; __pyx_result.reduction_level = __pyx_state[4]; __pyx_result.reserved = __pyx_state[5]
15276 * if len(__pyx_state) > 6 and hasattr(__pyx_result, '__dict__'): # <<<<<<<<<<<<<<
15277 * __pyx_result.__dict__.update(__pyx_state[6])
15278 */
15279 }
15280
15281 /* "(tree fragment)":11
15282 * __pyx_unpickle_ZoomLevel__set_state(<ZoomLevel> __pyx_result, __pyx_state)
15283 * return __pyx_result
15284 * cdef __pyx_unpickle_ZoomLevel__set_state(ZoomLevel __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
15285 * __pyx_result.bbi_file = __pyx_state[0]; __pyx_result.data_offset = __pyx_state[1]; __pyx_result.index_offset = __pyx_state[2]; __pyx_result.item_count = __pyx_state[3]; __pyx_result.reduction_level = __pyx_state[4]; __pyx_result.reserved = __pyx_state[5]
15286 * if len(__pyx_state) > 6 and hasattr(__pyx_result, '__dict__'):
15287 */
15288
15289 /* function exit code */
15290 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
15291 goto __pyx_L0;
15292 __pyx_L1_error:;
15293 __Pyx_XDECREF(__pyx_t_1);
15294 __Pyx_XDECREF(__pyx_t_9);
15295 __Pyx_XDECREF(__pyx_t_10);
15296 __Pyx_XDECREF(__pyx_t_11);
15297 __Pyx_AddTraceback("bx.bbi.bbi_file.__pyx_unpickle_ZoomLevel__set_state", __pyx_clineno, __pyx_lineno, __pyx_filename);
15298 __pyx_r = 0;
15299 __pyx_L0:;
15300 __Pyx_XGIVEREF(__pyx_r);
15301 __Pyx_RefNannyFinishContext();
15302 return __pyx_r;
15303 }
15304
15305 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":735
15306 * ctypedef npy_cdouble complex_t
15307 *
15308 * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
15309 * return PyArray_MultiIterNew(1, <void*>a)
15310 *
15311 */
15312
__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject * __pyx_v_a)15313 static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__pyx_v_a) {
15314 PyObject *__pyx_r = NULL;
15315 __Pyx_RefNannyDeclarations
15316 PyObject *__pyx_t_1 = NULL;
15317 int __pyx_lineno = 0;
15318 const char *__pyx_filename = NULL;
15319 int __pyx_clineno = 0;
15320 __Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0);
15321
15322 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":736
15323 *
15324 * cdef inline object PyArray_MultiIterNew1(a):
15325 * return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<<
15326 *
15327 * cdef inline object PyArray_MultiIterNew2(a, b):
15328 */
15329 __Pyx_XDECREF(__pyx_r);
15330 __pyx_t_1 = PyArray_MultiIterNew(1, ((void *)__pyx_v_a)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 736, __pyx_L1_error)
15331 __Pyx_GOTREF(__pyx_t_1);
15332 __pyx_r = __pyx_t_1;
15333 __pyx_t_1 = 0;
15334 goto __pyx_L0;
15335
15336 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":735
15337 * ctypedef npy_cdouble complex_t
15338 *
15339 * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
15340 * return PyArray_MultiIterNew(1, <void*>a)
15341 *
15342 */
15343
15344 /* function exit code */
15345 __pyx_L1_error:;
15346 __Pyx_XDECREF(__pyx_t_1);
15347 __Pyx_AddTraceback("numpy.PyArray_MultiIterNew1", __pyx_clineno, __pyx_lineno, __pyx_filename);
15348 __pyx_r = 0;
15349 __pyx_L0:;
15350 __Pyx_XGIVEREF(__pyx_r);
15351 __Pyx_RefNannyFinishContext();
15352 return __pyx_r;
15353 }
15354
15355 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":738
15356 * return PyArray_MultiIterNew(1, <void*>a)
15357 *
15358 * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
15359 * return PyArray_MultiIterNew(2, <void*>a, <void*>b)
15360 *
15361 */
15362
__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject * __pyx_v_a,PyObject * __pyx_v_b)15363 static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__pyx_v_a, PyObject *__pyx_v_b) {
15364 PyObject *__pyx_r = NULL;
15365 __Pyx_RefNannyDeclarations
15366 PyObject *__pyx_t_1 = NULL;
15367 int __pyx_lineno = 0;
15368 const char *__pyx_filename = NULL;
15369 int __pyx_clineno = 0;
15370 __Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0);
15371
15372 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":739
15373 *
15374 * cdef inline object PyArray_MultiIterNew2(a, b):
15375 * return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<<
15376 *
15377 * cdef inline object PyArray_MultiIterNew3(a, b, c):
15378 */
15379 __Pyx_XDECREF(__pyx_r);
15380 __pyx_t_1 = PyArray_MultiIterNew(2, ((void *)__pyx_v_a), ((void *)__pyx_v_b)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 739, __pyx_L1_error)
15381 __Pyx_GOTREF(__pyx_t_1);
15382 __pyx_r = __pyx_t_1;
15383 __pyx_t_1 = 0;
15384 goto __pyx_L0;
15385
15386 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":738
15387 * return PyArray_MultiIterNew(1, <void*>a)
15388 *
15389 * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
15390 * return PyArray_MultiIterNew(2, <void*>a, <void*>b)
15391 *
15392 */
15393
15394 /* function exit code */
15395 __pyx_L1_error:;
15396 __Pyx_XDECREF(__pyx_t_1);
15397 __Pyx_AddTraceback("numpy.PyArray_MultiIterNew2", __pyx_clineno, __pyx_lineno, __pyx_filename);
15398 __pyx_r = 0;
15399 __pyx_L0:;
15400 __Pyx_XGIVEREF(__pyx_r);
15401 __Pyx_RefNannyFinishContext();
15402 return __pyx_r;
15403 }
15404
15405 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":741
15406 * return PyArray_MultiIterNew(2, <void*>a, <void*>b)
15407 *
15408 * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
15409 * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
15410 *
15411 */
15412
__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject * __pyx_v_a,PyObject * __pyx_v_b,PyObject * __pyx_v_c)15413 static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c) {
15414 PyObject *__pyx_r = NULL;
15415 __Pyx_RefNannyDeclarations
15416 PyObject *__pyx_t_1 = NULL;
15417 int __pyx_lineno = 0;
15418 const char *__pyx_filename = NULL;
15419 int __pyx_clineno = 0;
15420 __Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0);
15421
15422 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":742
15423 *
15424 * cdef inline object PyArray_MultiIterNew3(a, b, c):
15425 * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<<
15426 *
15427 * cdef inline object PyArray_MultiIterNew4(a, b, c, d):
15428 */
15429 __Pyx_XDECREF(__pyx_r);
15430 __pyx_t_1 = PyArray_MultiIterNew(3, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 742, __pyx_L1_error)
15431 __Pyx_GOTREF(__pyx_t_1);
15432 __pyx_r = __pyx_t_1;
15433 __pyx_t_1 = 0;
15434 goto __pyx_L0;
15435
15436 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":741
15437 * return PyArray_MultiIterNew(2, <void*>a, <void*>b)
15438 *
15439 * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
15440 * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
15441 *
15442 */
15443
15444 /* function exit code */
15445 __pyx_L1_error:;
15446 __Pyx_XDECREF(__pyx_t_1);
15447 __Pyx_AddTraceback("numpy.PyArray_MultiIterNew3", __pyx_clineno, __pyx_lineno, __pyx_filename);
15448 __pyx_r = 0;
15449 __pyx_L0:;
15450 __Pyx_XGIVEREF(__pyx_r);
15451 __Pyx_RefNannyFinishContext();
15452 return __pyx_r;
15453 }
15454
15455 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":744
15456 * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
15457 *
15458 * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
15459 * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
15460 *
15461 */
15462
__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject * __pyx_v_a,PyObject * __pyx_v_b,PyObject * __pyx_v_c,PyObject * __pyx_v_d)15463 static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c, PyObject *__pyx_v_d) {
15464 PyObject *__pyx_r = NULL;
15465 __Pyx_RefNannyDeclarations
15466 PyObject *__pyx_t_1 = NULL;
15467 int __pyx_lineno = 0;
15468 const char *__pyx_filename = NULL;
15469 int __pyx_clineno = 0;
15470 __Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0);
15471
15472 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":745
15473 *
15474 * cdef inline object PyArray_MultiIterNew4(a, b, c, d):
15475 * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<<
15476 *
15477 * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
15478 */
15479 __Pyx_XDECREF(__pyx_r);
15480 __pyx_t_1 = PyArray_MultiIterNew(4, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c), ((void *)__pyx_v_d)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 745, __pyx_L1_error)
15481 __Pyx_GOTREF(__pyx_t_1);
15482 __pyx_r = __pyx_t_1;
15483 __pyx_t_1 = 0;
15484 goto __pyx_L0;
15485
15486 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":744
15487 * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
15488 *
15489 * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
15490 * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
15491 *
15492 */
15493
15494 /* function exit code */
15495 __pyx_L1_error:;
15496 __Pyx_XDECREF(__pyx_t_1);
15497 __Pyx_AddTraceback("numpy.PyArray_MultiIterNew4", __pyx_clineno, __pyx_lineno, __pyx_filename);
15498 __pyx_r = 0;
15499 __pyx_L0:;
15500 __Pyx_XGIVEREF(__pyx_r);
15501 __Pyx_RefNannyFinishContext();
15502 return __pyx_r;
15503 }
15504
15505 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":747
15506 * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
15507 *
15508 * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
15509 * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
15510 *
15511 */
15512
__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject * __pyx_v_a,PyObject * __pyx_v_b,PyObject * __pyx_v_c,PyObject * __pyx_v_d,PyObject * __pyx_v_e)15513 static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c, PyObject *__pyx_v_d, PyObject *__pyx_v_e) {
15514 PyObject *__pyx_r = NULL;
15515 __Pyx_RefNannyDeclarations
15516 PyObject *__pyx_t_1 = NULL;
15517 int __pyx_lineno = 0;
15518 const char *__pyx_filename = NULL;
15519 int __pyx_clineno = 0;
15520 __Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 0);
15521
15522 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":748
15523 *
15524 * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
15525 * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<<
15526 *
15527 * cdef inline tuple PyDataType_SHAPE(dtype d):
15528 */
15529 __Pyx_XDECREF(__pyx_r);
15530 __pyx_t_1 = PyArray_MultiIterNew(5, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c), ((void *)__pyx_v_d), ((void *)__pyx_v_e)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 748, __pyx_L1_error)
15531 __Pyx_GOTREF(__pyx_t_1);
15532 __pyx_r = __pyx_t_1;
15533 __pyx_t_1 = 0;
15534 goto __pyx_L0;
15535
15536 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":747
15537 * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
15538 *
15539 * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
15540 * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
15541 *
15542 */
15543
15544 /* function exit code */
15545 __pyx_L1_error:;
15546 __Pyx_XDECREF(__pyx_t_1);
15547 __Pyx_AddTraceback("numpy.PyArray_MultiIterNew5", __pyx_clineno, __pyx_lineno, __pyx_filename);
15548 __pyx_r = 0;
15549 __pyx_L0:;
15550 __Pyx_XGIVEREF(__pyx_r);
15551 __Pyx_RefNannyFinishContext();
15552 return __pyx_r;
15553 }
15554
15555 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":750
15556 * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
15557 *
15558 * cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
15559 * if PyDataType_HASSUBARRAY(d):
15560 * return <tuple>d.subarray.shape
15561 */
15562
__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr * __pyx_v_d)15563 static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__pyx_v_d) {
15564 PyObject *__pyx_r = NULL;
15565 __Pyx_RefNannyDeclarations
15566 int __pyx_t_1;
15567 __Pyx_RefNannySetupContext("PyDataType_SHAPE", 0);
15568
15569 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":751
15570 *
15571 * cdef inline tuple PyDataType_SHAPE(dtype d):
15572 * if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
15573 * return <tuple>d.subarray.shape
15574 * else:
15575 */
15576 __pyx_t_1 = (PyDataType_HASSUBARRAY(__pyx_v_d) != 0);
15577 if (__pyx_t_1) {
15578
15579 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":752
15580 * cdef inline tuple PyDataType_SHAPE(dtype d):
15581 * if PyDataType_HASSUBARRAY(d):
15582 * return <tuple>d.subarray.shape # <<<<<<<<<<<<<<
15583 * else:
15584 * return ()
15585 */
15586 __Pyx_XDECREF(__pyx_r);
15587 __Pyx_INCREF(((PyObject*)__pyx_v_d->subarray->shape));
15588 __pyx_r = ((PyObject*)__pyx_v_d->subarray->shape);
15589 goto __pyx_L0;
15590
15591 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":751
15592 *
15593 * cdef inline tuple PyDataType_SHAPE(dtype d):
15594 * if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
15595 * return <tuple>d.subarray.shape
15596 * else:
15597 */
15598 }
15599
15600 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":754
15601 * return <tuple>d.subarray.shape
15602 * else:
15603 * return () # <<<<<<<<<<<<<<
15604 *
15605 *
15606 */
15607 /*else*/ {
15608 __Pyx_XDECREF(__pyx_r);
15609 __Pyx_INCREF(__pyx_empty_tuple);
15610 __pyx_r = __pyx_empty_tuple;
15611 goto __pyx_L0;
15612 }
15613
15614 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":750
15615 * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
15616 *
15617 * cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
15618 * if PyDataType_HASSUBARRAY(d):
15619 * return <tuple>d.subarray.shape
15620 */
15621
15622 /* function exit code */
15623 __pyx_L0:;
15624 __Pyx_XGIVEREF(__pyx_r);
15625 __Pyx_RefNannyFinishContext();
15626 return __pyx_r;
15627 }
15628
15629 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":929
15630 * int _import_umath() except -1
15631 *
15632 * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<<
15633 * Py_INCREF(base) # important to do this before stealing the reference below!
15634 * PyArray_SetBaseObject(arr, base)
15635 */
15636
__pyx_f_5numpy_set_array_base(PyArrayObject * __pyx_v_arr,PyObject * __pyx_v_base)15637 static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_arr, PyObject *__pyx_v_base) {
15638 __Pyx_RefNannyDeclarations
15639 __Pyx_RefNannySetupContext("set_array_base", 0);
15640
15641 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":930
15642 *
15643 * cdef inline void set_array_base(ndarray arr, object base):
15644 * Py_INCREF(base) # important to do this before stealing the reference below! # <<<<<<<<<<<<<<
15645 * PyArray_SetBaseObject(arr, base)
15646 *
15647 */
15648 Py_INCREF(__pyx_v_base);
15649
15650 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":931
15651 * cdef inline void set_array_base(ndarray arr, object base):
15652 * Py_INCREF(base) # important to do this before stealing the reference below!
15653 * PyArray_SetBaseObject(arr, base) # <<<<<<<<<<<<<<
15654 *
15655 * cdef inline object get_array_base(ndarray arr):
15656 */
15657 (void)(PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base));
15658
15659 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":929
15660 * int _import_umath() except -1
15661 *
15662 * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<<
15663 * Py_INCREF(base) # important to do this before stealing the reference below!
15664 * PyArray_SetBaseObject(arr, base)
15665 */
15666
15667 /* function exit code */
15668 __Pyx_RefNannyFinishContext();
15669 }
15670
15671 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":933
15672 * PyArray_SetBaseObject(arr, base)
15673 *
15674 * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
15675 * base = PyArray_BASE(arr)
15676 * if base is NULL:
15677 */
15678
__pyx_f_5numpy_get_array_base(PyArrayObject * __pyx_v_arr)15679 static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__pyx_v_arr) {
15680 PyObject *__pyx_v_base;
15681 PyObject *__pyx_r = NULL;
15682 __Pyx_RefNannyDeclarations
15683 int __pyx_t_1;
15684 __Pyx_RefNannySetupContext("get_array_base", 0);
15685
15686 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":934
15687 *
15688 * cdef inline object get_array_base(ndarray arr):
15689 * base = PyArray_BASE(arr) # <<<<<<<<<<<<<<
15690 * if base is NULL:
15691 * return None
15692 */
15693 __pyx_v_base = PyArray_BASE(__pyx_v_arr);
15694
15695 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":935
15696 * cdef inline object get_array_base(ndarray arr):
15697 * base = PyArray_BASE(arr)
15698 * if base is NULL: # <<<<<<<<<<<<<<
15699 * return None
15700 * return <object>base
15701 */
15702 __pyx_t_1 = ((__pyx_v_base == NULL) != 0);
15703 if (__pyx_t_1) {
15704
15705 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":936
15706 * base = PyArray_BASE(arr)
15707 * if base is NULL:
15708 * return None # <<<<<<<<<<<<<<
15709 * return <object>base
15710 *
15711 */
15712 __Pyx_XDECREF(__pyx_r);
15713 __pyx_r = Py_None; __Pyx_INCREF(Py_None);
15714 goto __pyx_L0;
15715
15716 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":935
15717 * cdef inline object get_array_base(ndarray arr):
15718 * base = PyArray_BASE(arr)
15719 * if base is NULL: # <<<<<<<<<<<<<<
15720 * return None
15721 * return <object>base
15722 */
15723 }
15724
15725 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":937
15726 * if base is NULL:
15727 * return None
15728 * return <object>base # <<<<<<<<<<<<<<
15729 *
15730 * # Versions of the import_* functions which are more suitable for
15731 */
15732 __Pyx_XDECREF(__pyx_r);
15733 __Pyx_INCREF(((PyObject *)__pyx_v_base));
15734 __pyx_r = ((PyObject *)__pyx_v_base);
15735 goto __pyx_L0;
15736
15737 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":933
15738 * PyArray_SetBaseObject(arr, base)
15739 *
15740 * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
15741 * base = PyArray_BASE(arr)
15742 * if base is NULL:
15743 */
15744
15745 /* function exit code */
15746 __pyx_L0:;
15747 __Pyx_XGIVEREF(__pyx_r);
15748 __Pyx_RefNannyFinishContext();
15749 return __pyx_r;
15750 }
15751
15752 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":941
15753 * # Versions of the import_* functions which are more suitable for
15754 * # Cython code.
15755 * cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
15756 * try:
15757 * __pyx_import_array()
15758 */
15759
__pyx_f_5numpy_import_array(void)15760 static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
15761 int __pyx_r;
15762 __Pyx_RefNannyDeclarations
15763 PyObject *__pyx_t_1 = NULL;
15764 PyObject *__pyx_t_2 = NULL;
15765 PyObject *__pyx_t_3 = NULL;
15766 int __pyx_t_4;
15767 PyObject *__pyx_t_5 = NULL;
15768 PyObject *__pyx_t_6 = NULL;
15769 PyObject *__pyx_t_7 = NULL;
15770 PyObject *__pyx_t_8 = NULL;
15771 int __pyx_lineno = 0;
15772 const char *__pyx_filename = NULL;
15773 int __pyx_clineno = 0;
15774 __Pyx_RefNannySetupContext("import_array", 0);
15775
15776 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":942
15777 * # Cython code.
15778 * cdef inline int import_array() except -1:
15779 * try: # <<<<<<<<<<<<<<
15780 * __pyx_import_array()
15781 * except Exception:
15782 */
15783 {
15784 __Pyx_PyThreadState_declare
15785 __Pyx_PyThreadState_assign
15786 __Pyx_ExceptionSave(&__pyx_t_1, &__pyx_t_2, &__pyx_t_3);
15787 __Pyx_XGOTREF(__pyx_t_1);
15788 __Pyx_XGOTREF(__pyx_t_2);
15789 __Pyx_XGOTREF(__pyx_t_3);
15790 /*try:*/ {
15791
15792 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":943
15793 * cdef inline int import_array() except -1:
15794 * try:
15795 * __pyx_import_array() # <<<<<<<<<<<<<<
15796 * except Exception:
15797 * raise ImportError("numpy.core.multiarray failed to import")
15798 */
15799 __pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(3, 943, __pyx_L3_error)
15800
15801 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":942
15802 * # Cython code.
15803 * cdef inline int import_array() except -1:
15804 * try: # <<<<<<<<<<<<<<
15805 * __pyx_import_array()
15806 * except Exception:
15807 */
15808 }
15809 __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
15810 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
15811 __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
15812 goto __pyx_L8_try_end;
15813 __pyx_L3_error:;
15814
15815 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":944
15816 * try:
15817 * __pyx_import_array()
15818 * except Exception: # <<<<<<<<<<<<<<
15819 * raise ImportError("numpy.core.multiarray failed to import")
15820 *
15821 */
15822 __pyx_t_4 = __Pyx_PyErr_ExceptionMatches(((PyObject *)(&((PyTypeObject*)PyExc_Exception)[0])));
15823 if (__pyx_t_4) {
15824 __Pyx_AddTraceback("numpy.import_array", __pyx_clineno, __pyx_lineno, __pyx_filename);
15825 if (__Pyx_GetException(&__pyx_t_5, &__pyx_t_6, &__pyx_t_7) < 0) __PYX_ERR(3, 944, __pyx_L5_except_error)
15826 __Pyx_GOTREF(__pyx_t_5);
15827 __Pyx_GOTREF(__pyx_t_6);
15828 __Pyx_GOTREF(__pyx_t_7);
15829
15830 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":945
15831 * __pyx_import_array()
15832 * except Exception:
15833 * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
15834 *
15835 * cdef inline int import_umath() except -1:
15836 */
15837 __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__2, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(3, 945, __pyx_L5_except_error)
15838 __Pyx_GOTREF(__pyx_t_8);
15839 __Pyx_Raise(__pyx_t_8, 0, 0, 0);
15840 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
15841 __PYX_ERR(3, 945, __pyx_L5_except_error)
15842 }
15843 goto __pyx_L5_except_error;
15844 __pyx_L5_except_error:;
15845
15846 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":942
15847 * # Cython code.
15848 * cdef inline int import_array() except -1:
15849 * try: # <<<<<<<<<<<<<<
15850 * __pyx_import_array()
15851 * except Exception:
15852 */
15853 __Pyx_XGIVEREF(__pyx_t_1);
15854 __Pyx_XGIVEREF(__pyx_t_2);
15855 __Pyx_XGIVEREF(__pyx_t_3);
15856 __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3);
15857 goto __pyx_L1_error;
15858 __pyx_L8_try_end:;
15859 }
15860
15861 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":941
15862 * # Versions of the import_* functions which are more suitable for
15863 * # Cython code.
15864 * cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
15865 * try:
15866 * __pyx_import_array()
15867 */
15868
15869 /* function exit code */
15870 __pyx_r = 0;
15871 goto __pyx_L0;
15872 __pyx_L1_error:;
15873 __Pyx_XDECREF(__pyx_t_5);
15874 __Pyx_XDECREF(__pyx_t_6);
15875 __Pyx_XDECREF(__pyx_t_7);
15876 __Pyx_XDECREF(__pyx_t_8);
15877 __Pyx_AddTraceback("numpy.import_array", __pyx_clineno, __pyx_lineno, __pyx_filename);
15878 __pyx_r = -1;
15879 __pyx_L0:;
15880 __Pyx_RefNannyFinishContext();
15881 return __pyx_r;
15882 }
15883
15884 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":947
15885 * raise ImportError("numpy.core.multiarray failed to import")
15886 *
15887 * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
15888 * try:
15889 * _import_umath()
15890 */
15891
__pyx_f_5numpy_import_umath(void)15892 static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
15893 int __pyx_r;
15894 __Pyx_RefNannyDeclarations
15895 PyObject *__pyx_t_1 = NULL;
15896 PyObject *__pyx_t_2 = NULL;
15897 PyObject *__pyx_t_3 = NULL;
15898 int __pyx_t_4;
15899 PyObject *__pyx_t_5 = NULL;
15900 PyObject *__pyx_t_6 = NULL;
15901 PyObject *__pyx_t_7 = NULL;
15902 PyObject *__pyx_t_8 = NULL;
15903 int __pyx_lineno = 0;
15904 const char *__pyx_filename = NULL;
15905 int __pyx_clineno = 0;
15906 __Pyx_RefNannySetupContext("import_umath", 0);
15907
15908 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":948
15909 *
15910 * cdef inline int import_umath() except -1:
15911 * try: # <<<<<<<<<<<<<<
15912 * _import_umath()
15913 * except Exception:
15914 */
15915 {
15916 __Pyx_PyThreadState_declare
15917 __Pyx_PyThreadState_assign
15918 __Pyx_ExceptionSave(&__pyx_t_1, &__pyx_t_2, &__pyx_t_3);
15919 __Pyx_XGOTREF(__pyx_t_1);
15920 __Pyx_XGOTREF(__pyx_t_2);
15921 __Pyx_XGOTREF(__pyx_t_3);
15922 /*try:*/ {
15923
15924 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":949
15925 * cdef inline int import_umath() except -1:
15926 * try:
15927 * _import_umath() # <<<<<<<<<<<<<<
15928 * except Exception:
15929 * raise ImportError("numpy.core.umath failed to import")
15930 */
15931 __pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(3, 949, __pyx_L3_error)
15932
15933 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":948
15934 *
15935 * cdef inline int import_umath() except -1:
15936 * try: # <<<<<<<<<<<<<<
15937 * _import_umath()
15938 * except Exception:
15939 */
15940 }
15941 __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
15942 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
15943 __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
15944 goto __pyx_L8_try_end;
15945 __pyx_L3_error:;
15946
15947 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":950
15948 * try:
15949 * _import_umath()
15950 * except Exception: # <<<<<<<<<<<<<<
15951 * raise ImportError("numpy.core.umath failed to import")
15952 *
15953 */
15954 __pyx_t_4 = __Pyx_PyErr_ExceptionMatches(((PyObject *)(&((PyTypeObject*)PyExc_Exception)[0])));
15955 if (__pyx_t_4) {
15956 __Pyx_AddTraceback("numpy.import_umath", __pyx_clineno, __pyx_lineno, __pyx_filename);
15957 if (__Pyx_GetException(&__pyx_t_5, &__pyx_t_6, &__pyx_t_7) < 0) __PYX_ERR(3, 950, __pyx_L5_except_error)
15958 __Pyx_GOTREF(__pyx_t_5);
15959 __Pyx_GOTREF(__pyx_t_6);
15960 __Pyx_GOTREF(__pyx_t_7);
15961
15962 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":951
15963 * _import_umath()
15964 * except Exception:
15965 * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
15966 *
15967 * cdef inline int import_ufunc() except -1:
15968 */
15969 __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__3, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(3, 951, __pyx_L5_except_error)
15970 __Pyx_GOTREF(__pyx_t_8);
15971 __Pyx_Raise(__pyx_t_8, 0, 0, 0);
15972 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
15973 __PYX_ERR(3, 951, __pyx_L5_except_error)
15974 }
15975 goto __pyx_L5_except_error;
15976 __pyx_L5_except_error:;
15977
15978 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":948
15979 *
15980 * cdef inline int import_umath() except -1:
15981 * try: # <<<<<<<<<<<<<<
15982 * _import_umath()
15983 * except Exception:
15984 */
15985 __Pyx_XGIVEREF(__pyx_t_1);
15986 __Pyx_XGIVEREF(__pyx_t_2);
15987 __Pyx_XGIVEREF(__pyx_t_3);
15988 __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3);
15989 goto __pyx_L1_error;
15990 __pyx_L8_try_end:;
15991 }
15992
15993 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":947
15994 * raise ImportError("numpy.core.multiarray failed to import")
15995 *
15996 * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
15997 * try:
15998 * _import_umath()
15999 */
16000
16001 /* function exit code */
16002 __pyx_r = 0;
16003 goto __pyx_L0;
16004 __pyx_L1_error:;
16005 __Pyx_XDECREF(__pyx_t_5);
16006 __Pyx_XDECREF(__pyx_t_6);
16007 __Pyx_XDECREF(__pyx_t_7);
16008 __Pyx_XDECREF(__pyx_t_8);
16009 __Pyx_AddTraceback("numpy.import_umath", __pyx_clineno, __pyx_lineno, __pyx_filename);
16010 __pyx_r = -1;
16011 __pyx_L0:;
16012 __Pyx_RefNannyFinishContext();
16013 return __pyx_r;
16014 }
16015
16016 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":953
16017 * raise ImportError("numpy.core.umath failed to import")
16018 *
16019 * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
16020 * try:
16021 * _import_umath()
16022 */
16023
__pyx_f_5numpy_import_ufunc(void)16024 static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
16025 int __pyx_r;
16026 __Pyx_RefNannyDeclarations
16027 PyObject *__pyx_t_1 = NULL;
16028 PyObject *__pyx_t_2 = NULL;
16029 PyObject *__pyx_t_3 = NULL;
16030 int __pyx_t_4;
16031 PyObject *__pyx_t_5 = NULL;
16032 PyObject *__pyx_t_6 = NULL;
16033 PyObject *__pyx_t_7 = NULL;
16034 PyObject *__pyx_t_8 = NULL;
16035 int __pyx_lineno = 0;
16036 const char *__pyx_filename = NULL;
16037 int __pyx_clineno = 0;
16038 __Pyx_RefNannySetupContext("import_ufunc", 0);
16039
16040 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":954
16041 *
16042 * cdef inline int import_ufunc() except -1:
16043 * try: # <<<<<<<<<<<<<<
16044 * _import_umath()
16045 * except Exception:
16046 */
16047 {
16048 __Pyx_PyThreadState_declare
16049 __Pyx_PyThreadState_assign
16050 __Pyx_ExceptionSave(&__pyx_t_1, &__pyx_t_2, &__pyx_t_3);
16051 __Pyx_XGOTREF(__pyx_t_1);
16052 __Pyx_XGOTREF(__pyx_t_2);
16053 __Pyx_XGOTREF(__pyx_t_3);
16054 /*try:*/ {
16055
16056 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":955
16057 * cdef inline int import_ufunc() except -1:
16058 * try:
16059 * _import_umath() # <<<<<<<<<<<<<<
16060 * except Exception:
16061 * raise ImportError("numpy.core.umath failed to import")
16062 */
16063 __pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(3, 955, __pyx_L3_error)
16064
16065 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":954
16066 *
16067 * cdef inline int import_ufunc() except -1:
16068 * try: # <<<<<<<<<<<<<<
16069 * _import_umath()
16070 * except Exception:
16071 */
16072 }
16073 __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
16074 __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
16075 __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
16076 goto __pyx_L8_try_end;
16077 __pyx_L3_error:;
16078
16079 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":956
16080 * try:
16081 * _import_umath()
16082 * except Exception: # <<<<<<<<<<<<<<
16083 * raise ImportError("numpy.core.umath failed to import")
16084 *
16085 */
16086 __pyx_t_4 = __Pyx_PyErr_ExceptionMatches(((PyObject *)(&((PyTypeObject*)PyExc_Exception)[0])));
16087 if (__pyx_t_4) {
16088 __Pyx_AddTraceback("numpy.import_ufunc", __pyx_clineno, __pyx_lineno, __pyx_filename);
16089 if (__Pyx_GetException(&__pyx_t_5, &__pyx_t_6, &__pyx_t_7) < 0) __PYX_ERR(3, 956, __pyx_L5_except_error)
16090 __Pyx_GOTREF(__pyx_t_5);
16091 __Pyx_GOTREF(__pyx_t_6);
16092 __Pyx_GOTREF(__pyx_t_7);
16093
16094 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":957
16095 * _import_umath()
16096 * except Exception:
16097 * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
16098 *
16099 * cdef extern from *:
16100 */
16101 __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__3, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(3, 957, __pyx_L5_except_error)
16102 __Pyx_GOTREF(__pyx_t_8);
16103 __Pyx_Raise(__pyx_t_8, 0, 0, 0);
16104 __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
16105 __PYX_ERR(3, 957, __pyx_L5_except_error)
16106 }
16107 goto __pyx_L5_except_error;
16108 __pyx_L5_except_error:;
16109
16110 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":954
16111 *
16112 * cdef inline int import_ufunc() except -1:
16113 * try: # <<<<<<<<<<<<<<
16114 * _import_umath()
16115 * except Exception:
16116 */
16117 __Pyx_XGIVEREF(__pyx_t_1);
16118 __Pyx_XGIVEREF(__pyx_t_2);
16119 __Pyx_XGIVEREF(__pyx_t_3);
16120 __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3);
16121 goto __pyx_L1_error;
16122 __pyx_L8_try_end:;
16123 }
16124
16125 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":953
16126 * raise ImportError("numpy.core.umath failed to import")
16127 *
16128 * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
16129 * try:
16130 * _import_umath()
16131 */
16132
16133 /* function exit code */
16134 __pyx_r = 0;
16135 goto __pyx_L0;
16136 __pyx_L1_error:;
16137 __Pyx_XDECREF(__pyx_t_5);
16138 __Pyx_XDECREF(__pyx_t_6);
16139 __Pyx_XDECREF(__pyx_t_7);
16140 __Pyx_XDECREF(__pyx_t_8);
16141 __Pyx_AddTraceback("numpy.import_ufunc", __pyx_clineno, __pyx_lineno, __pyx_filename);
16142 __pyx_r = -1;
16143 __pyx_L0:;
16144 __Pyx_RefNannyFinishContext();
16145 return __pyx_r;
16146 }
16147
16148 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":967
16149 *
16150 *
16151 * cdef inline bint is_timedelta64_object(object obj): # <<<<<<<<<<<<<<
16152 * """
16153 * Cython equivalent of `isinstance(obj, np.timedelta64)`
16154 */
16155
__pyx_f_5numpy_is_timedelta64_object(PyObject * __pyx_v_obj)16156 static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
16157 int __pyx_r;
16158 __Pyx_RefNannyDeclarations
16159 __Pyx_RefNannySetupContext("is_timedelta64_object", 0);
16160
16161 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":979
16162 * bool
16163 * """
16164 * return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type) # <<<<<<<<<<<<<<
16165 *
16166 *
16167 */
16168 __pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
16169 goto __pyx_L0;
16170
16171 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":967
16172 *
16173 *
16174 * cdef inline bint is_timedelta64_object(object obj): # <<<<<<<<<<<<<<
16175 * """
16176 * Cython equivalent of `isinstance(obj, np.timedelta64)`
16177 */
16178
16179 /* function exit code */
16180 __pyx_L0:;
16181 __Pyx_RefNannyFinishContext();
16182 return __pyx_r;
16183 }
16184
16185 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":982
16186 *
16187 *
16188 * cdef inline bint is_datetime64_object(object obj): # <<<<<<<<<<<<<<
16189 * """
16190 * Cython equivalent of `isinstance(obj, np.datetime64)`
16191 */
16192
__pyx_f_5numpy_is_datetime64_object(PyObject * __pyx_v_obj)16193 static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
16194 int __pyx_r;
16195 __Pyx_RefNannyDeclarations
16196 __Pyx_RefNannySetupContext("is_datetime64_object", 0);
16197
16198 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":994
16199 * bool
16200 * """
16201 * return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type) # <<<<<<<<<<<<<<
16202 *
16203 *
16204 */
16205 __pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
16206 goto __pyx_L0;
16207
16208 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":982
16209 *
16210 *
16211 * cdef inline bint is_datetime64_object(object obj): # <<<<<<<<<<<<<<
16212 * """
16213 * Cython equivalent of `isinstance(obj, np.datetime64)`
16214 */
16215
16216 /* function exit code */
16217 __pyx_L0:;
16218 __Pyx_RefNannyFinishContext();
16219 return __pyx_r;
16220 }
16221
16222 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":997
16223 *
16224 *
16225 * cdef inline npy_datetime get_datetime64_value(object obj) nogil: # <<<<<<<<<<<<<<
16226 * """
16227 * returns the int64 value underlying scalar numpy datetime64 object
16228 */
16229
__pyx_f_5numpy_get_datetime64_value(PyObject * __pyx_v_obj)16230 static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
16231 npy_datetime __pyx_r;
16232
16233 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":1004
16234 * also needed. That can be found using `get_datetime64_unit`.
16235 * """
16236 * return (<PyDatetimeScalarObject*>obj).obval # <<<<<<<<<<<<<<
16237 *
16238 *
16239 */
16240 __pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
16241 goto __pyx_L0;
16242
16243 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":997
16244 *
16245 *
16246 * cdef inline npy_datetime get_datetime64_value(object obj) nogil: # <<<<<<<<<<<<<<
16247 * """
16248 * returns the int64 value underlying scalar numpy datetime64 object
16249 */
16250
16251 /* function exit code */
16252 __pyx_L0:;
16253 return __pyx_r;
16254 }
16255
16256 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":1007
16257 *
16258 *
16259 * cdef inline npy_timedelta get_timedelta64_value(object obj) nogil: # <<<<<<<<<<<<<<
16260 * """
16261 * returns the int64 value underlying scalar numpy timedelta64 object
16262 */
16263
__pyx_f_5numpy_get_timedelta64_value(PyObject * __pyx_v_obj)16264 static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
16265 npy_timedelta __pyx_r;
16266
16267 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":1011
16268 * returns the int64 value underlying scalar numpy timedelta64 object
16269 * """
16270 * return (<PyTimedeltaScalarObject*>obj).obval # <<<<<<<<<<<<<<
16271 *
16272 *
16273 */
16274 __pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
16275 goto __pyx_L0;
16276
16277 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":1007
16278 *
16279 *
16280 * cdef inline npy_timedelta get_timedelta64_value(object obj) nogil: # <<<<<<<<<<<<<<
16281 * """
16282 * returns the int64 value underlying scalar numpy timedelta64 object
16283 */
16284
16285 /* function exit code */
16286 __pyx_L0:;
16287 return __pyx_r;
16288 }
16289
16290 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":1014
16291 *
16292 *
16293 * cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil: # <<<<<<<<<<<<<<
16294 * """
16295 * returns the unit part of the dtype for a numpy datetime64 object.
16296 */
16297
__pyx_f_5numpy_get_datetime64_unit(PyObject * __pyx_v_obj)16298 static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
16299 NPY_DATETIMEUNIT __pyx_r;
16300
16301 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":1018
16302 * returns the unit part of the dtype for a numpy datetime64 object.
16303 * """
16304 * return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base # <<<<<<<<<<<<<<
16305 */
16306 __pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
16307 goto __pyx_L0;
16308
16309 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":1014
16310 *
16311 *
16312 * cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil: # <<<<<<<<<<<<<<
16313 * """
16314 * returns the unit part of the dtype for a numpy datetime64 object.
16315 */
16316
16317 /* function exit code */
16318 __pyx_L0:;
16319 return __pyx_r;
16320 }
16321
__pyx_tp_new_2bx_3bbi_8bbi_file_SummaryBlock(PyTypeObject * t,CYTHON_UNUSED PyObject * a,CYTHON_UNUSED PyObject * k)16322 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_SummaryBlock(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
16323 PyObject *o;
16324 if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
16325 o = (*t->tp_alloc)(t, 0);
16326 } else {
16327 o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
16328 }
16329 if (unlikely(!o)) return 0;
16330 return o;
16331 }
16332
__pyx_tp_dealloc_2bx_3bbi_8bbi_file_SummaryBlock(PyObject * o)16333 static void __pyx_tp_dealloc_2bx_3bbi_8bbi_file_SummaryBlock(PyObject *o) {
16334 #if CYTHON_USE_TP_FINALIZE
16335 if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
16336 if (PyObject_CallFinalizerFromDealloc(o)) return;
16337 }
16338 #endif
16339 (*Py_TYPE(o)->tp_free)(o);
16340 }
16341
__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_chrom_id(PyObject * o,CYTHON_UNUSED void * x)16342 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_chrom_id(PyObject *o, CYTHON_UNUSED void *x) {
16343 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_1__get__(o);
16344 }
16345
__pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_chrom_id(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16346 static int __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_chrom_id(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16347 if (v) {
16348 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8chrom_id_3__set__(o, v);
16349 }
16350 else {
16351 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16352 return -1;
16353 }
16354 }
16355
__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_start(PyObject * o,CYTHON_UNUSED void * x)16356 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_start(PyObject *o, CYTHON_UNUSED void *x) {
16357 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_5start_1__get__(o);
16358 }
16359
__pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_start(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16360 static int __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_start(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16361 if (v) {
16362 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_5start_3__set__(o, v);
16363 }
16364 else {
16365 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16366 return -1;
16367 }
16368 }
16369
__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_end(PyObject * o,CYTHON_UNUSED void * x)16370 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_end(PyObject *o, CYTHON_UNUSED void *x) {
16371 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3end_1__get__(o);
16372 }
16373
__pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_end(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16374 static int __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_end(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16375 if (v) {
16376 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3end_3__set__(o, v);
16377 }
16378 else {
16379 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16380 return -1;
16381 }
16382 }
16383
__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_valid_count(PyObject * o,CYTHON_UNUSED void * x)16384 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_valid_count(PyObject *o, CYTHON_UNUSED void *x) {
16385 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_1__get__(o);
16386 }
16387
__pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_valid_count(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16388 static int __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_valid_count(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16389 if (v) {
16390 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11valid_count_3__set__(o, v);
16391 }
16392 else {
16393 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16394 return -1;
16395 }
16396 }
16397
__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_min_val(PyObject * o,CYTHON_UNUSED void * x)16398 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_min_val(PyObject *o, CYTHON_UNUSED void *x) {
16399 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_1__get__(o);
16400 }
16401
__pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_min_val(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16402 static int __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_min_val(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16403 if (v) {
16404 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7min_val_3__set__(o, v);
16405 }
16406 else {
16407 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16408 return -1;
16409 }
16410 }
16411
__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_max_val(PyObject * o,CYTHON_UNUSED void * x)16412 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_max_val(PyObject *o, CYTHON_UNUSED void *x) {
16413 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_1__get__(o);
16414 }
16415
__pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_max_val(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16416 static int __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_max_val(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16417 if (v) {
16418 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_7max_val_3__set__(o, v);
16419 }
16420 else {
16421 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16422 return -1;
16423 }
16424 }
16425
__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_data(PyObject * o,CYTHON_UNUSED void * x)16426 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_data(PyObject *o, CYTHON_UNUSED void *x) {
16427 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_1__get__(o);
16428 }
16429
__pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_data(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16430 static int __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_data(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16431 if (v) {
16432 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_8sum_data_3__set__(o, v);
16433 }
16434 else {
16435 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16436 return -1;
16437 }
16438 }
16439
__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_squares(PyObject * o,CYTHON_UNUSED void * x)16440 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_squares(PyObject *o, CYTHON_UNUSED void *x) {
16441 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_1__get__(o);
16442 }
16443
__pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_squares(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16444 static int __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_squares(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16445 if (v) {
16446 return __pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_11sum_squares_3__set__(o, v);
16447 }
16448 else {
16449 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16450 return -1;
16451 }
16452 }
16453
16454 static PyMethodDef __pyx_methods_2bx_3bbi_8bbi_file_SummaryBlock[] = {
16455 {"__reduce_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_1__reduce_cython__, METH_NOARGS, 0},
16456 {"__setstate_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_12SummaryBlock_3__setstate_cython__, METH_O, 0},
16457 {0, 0, 0, 0}
16458 };
16459
16460 static struct PyGetSetDef __pyx_getsets_2bx_3bbi_8bbi_file_SummaryBlock[] = {
16461 {(char *)"chrom_id", __pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_chrom_id, __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_chrom_id, (char *)0, 0},
16462 {(char *)"start", __pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_start, __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_start, (char *)0, 0},
16463 {(char *)"end", __pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_end, __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_end, (char *)0, 0},
16464 {(char *)"valid_count", __pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_valid_count, __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_valid_count, (char *)0, 0},
16465 {(char *)"min_val", __pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_min_val, __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_min_val, (char *)0, 0},
16466 {(char *)"max_val", __pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_max_val, __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_max_val, (char *)0, 0},
16467 {(char *)"sum_data", __pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_data, __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_data, (char *)0, 0},
16468 {(char *)"sum_squares", __pyx_getprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_squares, __pyx_setprop_2bx_3bbi_8bbi_file_12SummaryBlock_sum_squares, (char *)0, 0},
16469 {0, 0, 0, 0, 0}
16470 };
16471
16472 static PyTypeObject __pyx_type_2bx_3bbi_8bbi_file_SummaryBlock = {
16473 PyVarObject_HEAD_INIT(0, 0)
16474 "bx.bbi.bbi_file.SummaryBlock", /*tp_name*/
16475 sizeof(struct __pyx_obj_2bx_3bbi_8bbi_file_SummaryBlock), /*tp_basicsize*/
16476 0, /*tp_itemsize*/
16477 __pyx_tp_dealloc_2bx_3bbi_8bbi_file_SummaryBlock, /*tp_dealloc*/
16478 #if PY_VERSION_HEX < 0x030800b4
16479 0, /*tp_print*/
16480 #endif
16481 #if PY_VERSION_HEX >= 0x030800b4
16482 0, /*tp_vectorcall_offset*/
16483 #endif
16484 0, /*tp_getattr*/
16485 0, /*tp_setattr*/
16486 #if PY_MAJOR_VERSION < 3
16487 0, /*tp_compare*/
16488 #endif
16489 #if PY_MAJOR_VERSION >= 3
16490 0, /*tp_as_async*/
16491 #endif
16492 0, /*tp_repr*/
16493 0, /*tp_as_number*/
16494 0, /*tp_as_sequence*/
16495 0, /*tp_as_mapping*/
16496 0, /*tp_hash*/
16497 0, /*tp_call*/
16498 0, /*tp_str*/
16499 0, /*tp_getattro*/
16500 0, /*tp_setattro*/
16501 0, /*tp_as_buffer*/
16502 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
16503 "\n A block of summary data from disk\n ", /*tp_doc*/
16504 0, /*tp_traverse*/
16505 0, /*tp_clear*/
16506 0, /*tp_richcompare*/
16507 0, /*tp_weaklistoffset*/
16508 0, /*tp_iter*/
16509 0, /*tp_iternext*/
16510 __pyx_methods_2bx_3bbi_8bbi_file_SummaryBlock, /*tp_methods*/
16511 0, /*tp_members*/
16512 __pyx_getsets_2bx_3bbi_8bbi_file_SummaryBlock, /*tp_getset*/
16513 0, /*tp_base*/
16514 0, /*tp_dict*/
16515 0, /*tp_descr_get*/
16516 0, /*tp_descr_set*/
16517 0, /*tp_dictoffset*/
16518 0, /*tp_init*/
16519 0, /*tp_alloc*/
16520 __pyx_tp_new_2bx_3bbi_8bbi_file_SummaryBlock, /*tp_new*/
16521 0, /*tp_free*/
16522 0, /*tp_is_gc*/
16523 0, /*tp_bases*/
16524 0, /*tp_mro*/
16525 0, /*tp_cache*/
16526 0, /*tp_subclasses*/
16527 0, /*tp_weaklist*/
16528 0, /*tp_del*/
16529 0, /*tp_version_tag*/
16530 #if PY_VERSION_HEX >= 0x030400a1
16531 0, /*tp_finalize*/
16532 #endif
16533 #if PY_VERSION_HEX >= 0x030800b1
16534 0, /*tp_vectorcall*/
16535 #endif
16536 #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
16537 0, /*tp_print*/
16538 #endif
16539 #if PY_VERSION_HEX >= 0x030B00A2
16540 0, /*tp_inline_values_offset*/
16541 #endif
16542 };
16543 static struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_SummarizedData __pyx_vtable_2bx_3bbi_8bbi_file_SummarizedData;
16544
__pyx_tp_new_2bx_3bbi_8bbi_file_SummarizedData(PyTypeObject * t,CYTHON_UNUSED PyObject * a,CYTHON_UNUSED PyObject * k)16545 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_SummarizedData(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
16546 struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *p;
16547 PyObject *o;
16548 if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
16549 o = (*t->tp_alloc)(t, 0);
16550 } else {
16551 o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
16552 }
16553 if (unlikely(!o)) return 0;
16554 p = ((struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)o);
16555 p->__pyx_vtab = __pyx_vtabptr_2bx_3bbi_8bbi_file_SummarizedData;
16556 p->valid_count = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16557 p->min_val = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16558 p->max_val = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16559 p->sum_data = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16560 p->sum_squares = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16561 return o;
16562 }
16563
__pyx_tp_dealloc_2bx_3bbi_8bbi_file_SummarizedData(PyObject * o)16564 static void __pyx_tp_dealloc_2bx_3bbi_8bbi_file_SummarizedData(PyObject *o) {
16565 struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *p = (struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)o;
16566 #if CYTHON_USE_TP_FINALIZE
16567 if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
16568 if (PyObject_CallFinalizerFromDealloc(o)) return;
16569 }
16570 #endif
16571 PyObject_GC_UnTrack(o);
16572 Py_CLEAR(p->valid_count);
16573 Py_CLEAR(p->min_val);
16574 Py_CLEAR(p->max_val);
16575 Py_CLEAR(p->sum_data);
16576 Py_CLEAR(p->sum_squares);
16577 (*Py_TYPE(o)->tp_free)(o);
16578 }
16579
__pyx_tp_traverse_2bx_3bbi_8bbi_file_SummarizedData(PyObject * o,visitproc v,void * a)16580 static int __pyx_tp_traverse_2bx_3bbi_8bbi_file_SummarizedData(PyObject *o, visitproc v, void *a) {
16581 int e;
16582 struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *p = (struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)o;
16583 if (p->valid_count) {
16584 e = (*v)(((PyObject *)p->valid_count), a); if (e) return e;
16585 }
16586 if (p->min_val) {
16587 e = (*v)(((PyObject *)p->min_val), a); if (e) return e;
16588 }
16589 if (p->max_val) {
16590 e = (*v)(((PyObject *)p->max_val), a); if (e) return e;
16591 }
16592 if (p->sum_data) {
16593 e = (*v)(((PyObject *)p->sum_data), a); if (e) return e;
16594 }
16595 if (p->sum_squares) {
16596 e = (*v)(((PyObject *)p->sum_squares), a); if (e) return e;
16597 }
16598 return 0;
16599 }
16600
__pyx_tp_clear_2bx_3bbi_8bbi_file_SummarizedData(PyObject * o)16601 static int __pyx_tp_clear_2bx_3bbi_8bbi_file_SummarizedData(PyObject *o) {
16602 PyObject* tmp;
16603 struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *p = (struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *)o;
16604 tmp = ((PyObject*)p->valid_count);
16605 p->valid_count = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16606 Py_XDECREF(tmp);
16607 tmp = ((PyObject*)p->min_val);
16608 p->min_val = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16609 Py_XDECREF(tmp);
16610 tmp = ((PyObject*)p->max_val);
16611 p->max_val = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16612 Py_XDECREF(tmp);
16613 tmp = ((PyObject*)p->sum_data);
16614 p->sum_data = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16615 Py_XDECREF(tmp);
16616 tmp = ((PyObject*)p->sum_squares);
16617 p->sum_squares = ((PyArrayObject *)Py_None); Py_INCREF(Py_None);
16618 Py_XDECREF(tmp);
16619 return 0;
16620 }
16621
__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_start(PyObject * o,CYTHON_UNUSED void * x)16622 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_start(PyObject *o, CYTHON_UNUSED void *x) {
16623 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5start_1__get__(o);
16624 }
16625
__pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_start(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16626 static int __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_start(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16627 if (v) {
16628 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5start_3__set__(o, v);
16629 }
16630 else {
16631 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16632 return -1;
16633 }
16634 }
16635
__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_end(PyObject * o,CYTHON_UNUSED void * x)16636 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_end(PyObject *o, CYTHON_UNUSED void *x) {
16637 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3end_1__get__(o);
16638 }
16639
__pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_end(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16640 static int __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_end(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16641 if (v) {
16642 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3end_3__set__(o, v);
16643 }
16644 else {
16645 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16646 return -1;
16647 }
16648 }
16649
__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_size(PyObject * o,CYTHON_UNUSED void * x)16650 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_size(PyObject *o, CYTHON_UNUSED void *x) {
16651 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_4size_1__get__(o);
16652 }
16653
__pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_size(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16654 static int __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_size(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16655 if (v) {
16656 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_4size_3__set__(o, v);
16657 }
16658 else {
16659 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16660 return -1;
16661 }
16662 }
16663
__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_valid_count(PyObject * o,CYTHON_UNUSED void * x)16664 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_valid_count(PyObject *o, CYTHON_UNUSED void *x) {
16665 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_1__get__(o);
16666 }
16667
__pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_valid_count(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16668 static int __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_valid_count(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16669 if (v) {
16670 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_3__set__(o, v);
16671 }
16672 else {
16673 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11valid_count_5__del__(o);
16674 }
16675 }
16676
__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_min_val(PyObject * o,CYTHON_UNUSED void * x)16677 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_min_val(PyObject *o, CYTHON_UNUSED void *x) {
16678 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_1__get__(o);
16679 }
16680
__pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_min_val(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16681 static int __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_min_val(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16682 if (v) {
16683 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_3__set__(o, v);
16684 }
16685 else {
16686 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7min_val_5__del__(o);
16687 }
16688 }
16689
__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_max_val(PyObject * o,CYTHON_UNUSED void * x)16690 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_max_val(PyObject *o, CYTHON_UNUSED void *x) {
16691 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_1__get__(o);
16692 }
16693
__pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_max_val(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16694 static int __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_max_val(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16695 if (v) {
16696 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_3__set__(o, v);
16697 }
16698 else {
16699 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_7max_val_5__del__(o);
16700 }
16701 }
16702
__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_data(PyObject * o,CYTHON_UNUSED void * x)16703 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_data(PyObject *o, CYTHON_UNUSED void *x) {
16704 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_1__get__(o);
16705 }
16706
__pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_data(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16707 static int __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_data(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16708 if (v) {
16709 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_3__set__(o, v);
16710 }
16711 else {
16712 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_8sum_data_5__del__(o);
16713 }
16714 }
16715
__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_squares(PyObject * o,CYTHON_UNUSED void * x)16716 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_squares(PyObject *o, CYTHON_UNUSED void *x) {
16717 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_1__get__(o);
16718 }
16719
__pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_squares(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16720 static int __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_squares(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16721 if (v) {
16722 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_3__set__(o, v);
16723 }
16724 else {
16725 return __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_11sum_squares_5__del__(o);
16726 }
16727 }
16728
16729 static PyMethodDef __pyx_methods_2bx_3bbi_8bbi_file_SummarizedData[] = {
16730 {"__reduce_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_3__reduce_cython__, METH_NOARGS, 0},
16731 {"__setstate_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_5__setstate_cython__, METH_O, 0},
16732 {0, 0, 0, 0}
16733 };
16734
16735 static struct PyGetSetDef __pyx_getsets_2bx_3bbi_8bbi_file_SummarizedData[] = {
16736 {(char *)"start", __pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_start, __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_start, (char *)0, 0},
16737 {(char *)"end", __pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_end, __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_end, (char *)0, 0},
16738 {(char *)"size", __pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_size, __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_size, (char *)0, 0},
16739 {(char *)"valid_count", __pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_valid_count, __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_valid_count, (char *)0, 0},
16740 {(char *)"min_val", __pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_min_val, __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_min_val, (char *)0, 0},
16741 {(char *)"max_val", __pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_max_val, __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_max_val, (char *)0, 0},
16742 {(char *)"sum_data", __pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_data, __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_data, (char *)0, 0},
16743 {(char *)"sum_squares", __pyx_getprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_squares, __pyx_setprop_2bx_3bbi_8bbi_file_14SummarizedData_sum_squares, (char *)0, 0},
16744 {0, 0, 0, 0, 0}
16745 };
16746
16747 static PyTypeObject __pyx_type_2bx_3bbi_8bbi_file_SummarizedData = {
16748 PyVarObject_HEAD_INIT(0, 0)
16749 "bx.bbi.bbi_file.SummarizedData", /*tp_name*/
16750 sizeof(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData), /*tp_basicsize*/
16751 0, /*tp_itemsize*/
16752 __pyx_tp_dealloc_2bx_3bbi_8bbi_file_SummarizedData, /*tp_dealloc*/
16753 #if PY_VERSION_HEX < 0x030800b4
16754 0, /*tp_print*/
16755 #endif
16756 #if PY_VERSION_HEX >= 0x030800b4
16757 0, /*tp_vectorcall_offset*/
16758 #endif
16759 0, /*tp_getattr*/
16760 0, /*tp_setattr*/
16761 #if PY_MAJOR_VERSION < 3
16762 0, /*tp_compare*/
16763 #endif
16764 #if PY_MAJOR_VERSION >= 3
16765 0, /*tp_as_async*/
16766 #endif
16767 0, /*tp_repr*/
16768 0, /*tp_as_number*/
16769 0, /*tp_as_sequence*/
16770 0, /*tp_as_mapping*/
16771 0, /*tp_hash*/
16772 0, /*tp_call*/
16773 0, /*tp_str*/
16774 0, /*tp_getattro*/
16775 0, /*tp_setattro*/
16776 0, /*tp_as_buffer*/
16777 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
16778 "\n The result of using SummaryBlocks read from the file to produce a \n aggregation over a particular range and resolution\n ", /*tp_doc*/
16779 __pyx_tp_traverse_2bx_3bbi_8bbi_file_SummarizedData, /*tp_traverse*/
16780 __pyx_tp_clear_2bx_3bbi_8bbi_file_SummarizedData, /*tp_clear*/
16781 0, /*tp_richcompare*/
16782 0, /*tp_weaklistoffset*/
16783 0, /*tp_iter*/
16784 0, /*tp_iternext*/
16785 __pyx_methods_2bx_3bbi_8bbi_file_SummarizedData, /*tp_methods*/
16786 0, /*tp_members*/
16787 __pyx_getsets_2bx_3bbi_8bbi_file_SummarizedData, /*tp_getset*/
16788 0, /*tp_base*/
16789 0, /*tp_dict*/
16790 0, /*tp_descr_get*/
16791 0, /*tp_descr_set*/
16792 0, /*tp_dictoffset*/
16793 __pyx_pw_2bx_3bbi_8bbi_file_14SummarizedData_1__init__, /*tp_init*/
16794 0, /*tp_alloc*/
16795 __pyx_tp_new_2bx_3bbi_8bbi_file_SummarizedData, /*tp_new*/
16796 0, /*tp_free*/
16797 0, /*tp_is_gc*/
16798 0, /*tp_bases*/
16799 0, /*tp_mro*/
16800 0, /*tp_cache*/
16801 0, /*tp_subclasses*/
16802 0, /*tp_weaklist*/
16803 0, /*tp_del*/
16804 0, /*tp_version_tag*/
16805 #if PY_VERSION_HEX >= 0x030400a1
16806 0, /*tp_finalize*/
16807 #endif
16808 #if PY_VERSION_HEX >= 0x030800b1
16809 0, /*tp_vectorcall*/
16810 #endif
16811 #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
16812 0, /*tp_print*/
16813 #endif
16814 #if PY_VERSION_HEX >= 0x030B00A2
16815 0, /*tp_inline_values_offset*/
16816 #endif
16817 };
16818 static struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BBIFile __pyx_vtable_2bx_3bbi_8bbi_file_BBIFile;
16819
__pyx_tp_new_2bx_3bbi_8bbi_file_BBIFile(PyTypeObject * t,CYTHON_UNUSED PyObject * a,CYTHON_UNUSED PyObject * k)16820 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_BBIFile(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
16821 struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *p;
16822 PyObject *o;
16823 if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
16824 o = (*t->tp_alloc)(t, 0);
16825 } else {
16826 o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
16827 }
16828 if (unlikely(!o)) return 0;
16829 p = ((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)o);
16830 p->__pyx_vtab = __pyx_vtabptr_2bx_3bbi_8bbi_file_BBIFile;
16831 p->file = Py_None; Py_INCREF(Py_None);
16832 p->reader = Py_None; Py_INCREF(Py_None);
16833 p->chrom_bpt = ((struct __pyx_obj_2bx_3bbi_8bpt_file_BPTFile *)Py_None); Py_INCREF(Py_None);
16834 p->level_list = Py_None; Py_INCREF(Py_None);
16835 return o;
16836 }
16837
__pyx_tp_dealloc_2bx_3bbi_8bbi_file_BBIFile(PyObject * o)16838 static void __pyx_tp_dealloc_2bx_3bbi_8bbi_file_BBIFile(PyObject *o) {
16839 struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *p = (struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)o;
16840 #if CYTHON_USE_TP_FINALIZE
16841 if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
16842 if (PyObject_CallFinalizerFromDealloc(o)) return;
16843 }
16844 #endif
16845 PyObject_GC_UnTrack(o);
16846 Py_CLEAR(p->file);
16847 Py_CLEAR(p->reader);
16848 Py_CLEAR(p->chrom_bpt);
16849 Py_CLEAR(p->level_list);
16850 (*Py_TYPE(o)->tp_free)(o);
16851 }
16852
__pyx_tp_traverse_2bx_3bbi_8bbi_file_BBIFile(PyObject * o,visitproc v,void * a)16853 static int __pyx_tp_traverse_2bx_3bbi_8bbi_file_BBIFile(PyObject *o, visitproc v, void *a) {
16854 int e;
16855 struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *p = (struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)o;
16856 if (p->file) {
16857 e = (*v)(p->file, a); if (e) return e;
16858 }
16859 if (p->reader) {
16860 e = (*v)(p->reader, a); if (e) return e;
16861 }
16862 if (p->chrom_bpt) {
16863 e = (*v)(((PyObject *)p->chrom_bpt), a); if (e) return e;
16864 }
16865 if (p->level_list) {
16866 e = (*v)(p->level_list, a); if (e) return e;
16867 }
16868 return 0;
16869 }
16870
__pyx_tp_clear_2bx_3bbi_8bbi_file_BBIFile(PyObject * o)16871 static int __pyx_tp_clear_2bx_3bbi_8bbi_file_BBIFile(PyObject *o) {
16872 PyObject* tmp;
16873 struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *p = (struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)o;
16874 tmp = ((PyObject*)p->file);
16875 p->file = Py_None; Py_INCREF(Py_None);
16876 Py_XDECREF(tmp);
16877 tmp = ((PyObject*)p->reader);
16878 p->reader = Py_None; Py_INCREF(Py_None);
16879 Py_XDECREF(tmp);
16880 tmp = ((PyObject*)p->chrom_bpt);
16881 p->chrom_bpt = ((struct __pyx_obj_2bx_3bbi_8bpt_file_BPTFile *)Py_None); Py_INCREF(Py_None);
16882 Py_XDECREF(tmp);
16883 tmp = ((PyObject*)p->level_list);
16884 p->level_list = Py_None; Py_INCREF(Py_None);
16885 Py_XDECREF(tmp);
16886 return 0;
16887 }
16888
__pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_magic(PyObject * o,CYTHON_UNUSED void * x)16889 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_magic(PyObject *o, CYTHON_UNUSED void *x) {
16890 return __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5magic_1__get__(o);
16891 }
16892
__pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_magic(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16893 static int __pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_magic(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16894 if (v) {
16895 return __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5magic_3__set__(o, v);
16896 }
16897 else {
16898 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16899 return -1;
16900 }
16901 }
16902
__pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_version(PyObject * o,CYTHON_UNUSED void * x)16903 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_version(PyObject *o, CYTHON_UNUSED void *x) {
16904 return __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7version_1__get__(o);
16905 }
16906
__pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_version(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16907 static int __pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_version(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16908 if (v) {
16909 return __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7version_3__set__(o, v);
16910 }
16911 else {
16912 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16913 return -1;
16914 }
16915 }
16916
__pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_zoom_levels(PyObject * o,CYTHON_UNUSED void * x)16917 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_zoom_levels(PyObject *o, CYTHON_UNUSED void *x) {
16918 return __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_1__get__(o);
16919 }
16920
__pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_zoom_levels(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16921 static int __pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_zoom_levels(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16922 if (v) {
16923 return __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11zoom_levels_3__set__(o, v);
16924 }
16925 else {
16926 PyErr_SetString(PyExc_NotImplementedError, "__del__");
16927 return -1;
16928 }
16929 }
16930
__pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_level_list(PyObject * o,CYTHON_UNUSED void * x)16931 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_level_list(PyObject *o, CYTHON_UNUSED void *x) {
16932 return __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_1__get__(o);
16933 }
16934
__pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_level_list(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)16935 static int __pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_level_list(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
16936 if (v) {
16937 return __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_3__set__(o, v);
16938 }
16939 else {
16940 return __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_10level_list_5__del__(o);
16941 }
16942 }
16943
16944 static PyMethodDef __pyx_methods_2bx_3bbi_8bbi_file_BBIFile[] = {
16945 {"open", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_3open, METH_VARARGS|METH_KEYWORDS, __pyx_doc_2bx_3bbi_8bbi_file_7BBIFile_2open},
16946 {"summarize", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_5summarize, METH_VARARGS|METH_KEYWORDS, __pyx_doc_2bx_3bbi_8bbi_file_7BBIFile_4summarize},
16947 {"summarize_from_full", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_7summarize_from_full, METH_VARARGS|METH_KEYWORDS, __pyx_doc_2bx_3bbi_8bbi_file_7BBIFile_6summarize_from_full},
16948 {"query", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_9query, METH_VARARGS|METH_KEYWORDS, __pyx_doc_2bx_3bbi_8bbi_file_7BBIFile_8query},
16949 {"__reduce_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_11__reduce_cython__, METH_NOARGS, 0},
16950 {"__setstate_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_13__setstate_cython__, METH_O, 0},
16951 {0, 0, 0, 0}
16952 };
16953
16954 static struct PyGetSetDef __pyx_getsets_2bx_3bbi_8bbi_file_BBIFile[] = {
16955 {(char *)"magic", __pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_magic, __pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_magic, (char *)0, 0},
16956 {(char *)"version", __pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_version, __pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_version, (char *)0, 0},
16957 {(char *)"zoom_levels", __pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_zoom_levels, __pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_zoom_levels, (char *)0, 0},
16958 {(char *)"level_list", __pyx_getprop_2bx_3bbi_8bbi_file_7BBIFile_level_list, __pyx_setprop_2bx_3bbi_8bbi_file_7BBIFile_level_list, (char *)0, 0},
16959 {0, 0, 0, 0, 0}
16960 };
16961
16962 static PyTypeObject __pyx_type_2bx_3bbi_8bbi_file_BBIFile = {
16963 PyVarObject_HEAD_INIT(0, 0)
16964 "bx.bbi.bbi_file.BBIFile", /*tp_name*/
16965 sizeof(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile), /*tp_basicsize*/
16966 0, /*tp_itemsize*/
16967 __pyx_tp_dealloc_2bx_3bbi_8bbi_file_BBIFile, /*tp_dealloc*/
16968 #if PY_VERSION_HEX < 0x030800b4
16969 0, /*tp_print*/
16970 #endif
16971 #if PY_VERSION_HEX >= 0x030800b4
16972 0, /*tp_vectorcall_offset*/
16973 #endif
16974 0, /*tp_getattr*/
16975 0, /*tp_setattr*/
16976 #if PY_MAJOR_VERSION < 3
16977 0, /*tp_compare*/
16978 #endif
16979 #if PY_MAJOR_VERSION >= 3
16980 0, /*tp_as_async*/
16981 #endif
16982 0, /*tp_repr*/
16983 0, /*tp_as_number*/
16984 0, /*tp_as_sequence*/
16985 0, /*tp_as_mapping*/
16986 0, /*tp_hash*/
16987 0, /*tp_call*/
16988 0, /*tp_str*/
16989 0, /*tp_getattro*/
16990 0, /*tp_setattro*/
16991 0, /*tp_as_buffer*/
16992 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
16993 "\n A \"big binary indexed\" file. Stores blocks of raw data and numeric \n summaries of that data at different levels of aggregation (\"zoom levels\").\n Generic enough to accommodate both wiggle and bed data. \n ", /*tp_doc*/
16994 __pyx_tp_traverse_2bx_3bbi_8bbi_file_BBIFile, /*tp_traverse*/
16995 __pyx_tp_clear_2bx_3bbi_8bbi_file_BBIFile, /*tp_clear*/
16996 0, /*tp_richcompare*/
16997 0, /*tp_weaklistoffset*/
16998 0, /*tp_iter*/
16999 0, /*tp_iternext*/
17000 __pyx_methods_2bx_3bbi_8bbi_file_BBIFile, /*tp_methods*/
17001 0, /*tp_members*/
17002 __pyx_getsets_2bx_3bbi_8bbi_file_BBIFile, /*tp_getset*/
17003 0, /*tp_base*/
17004 0, /*tp_dict*/
17005 0, /*tp_descr_get*/
17006 0, /*tp_descr_set*/
17007 0, /*tp_dictoffset*/
17008 __pyx_pw_2bx_3bbi_8bbi_file_7BBIFile_1__init__, /*tp_init*/
17009 0, /*tp_alloc*/
17010 __pyx_tp_new_2bx_3bbi_8bbi_file_BBIFile, /*tp_new*/
17011 0, /*tp_free*/
17012 0, /*tp_is_gc*/
17013 0, /*tp_bases*/
17014 0, /*tp_mro*/
17015 0, /*tp_cache*/
17016 0, /*tp_subclasses*/
17017 0, /*tp_weaklist*/
17018 0, /*tp_del*/
17019 0, /*tp_version_tag*/
17020 #if PY_VERSION_HEX >= 0x030400a1
17021 0, /*tp_finalize*/
17022 #endif
17023 #if PY_VERSION_HEX >= 0x030800b1
17024 0, /*tp_vectorcall*/
17025 #endif
17026 #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
17027 0, /*tp_print*/
17028 #endif
17029 #if PY_VERSION_HEX >= 0x030B00A2
17030 0, /*tp_inline_values_offset*/
17031 #endif
17032 };
17033 static struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_BlockHandler __pyx_vtable_2bx_3bbi_8bbi_file_BlockHandler;
17034
__pyx_tp_new_2bx_3bbi_8bbi_file_BlockHandler(PyTypeObject * t,CYTHON_UNUSED PyObject * a,CYTHON_UNUSED PyObject * k)17035 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_BlockHandler(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
17036 struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *p;
17037 PyObject *o;
17038 if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
17039 o = (*t->tp_alloc)(t, 0);
17040 } else {
17041 o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
17042 }
17043 if (unlikely(!o)) return 0;
17044 p = ((struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *)o);
17045 p->__pyx_vtab = __pyx_vtabptr_2bx_3bbi_8bbi_file_BlockHandler;
17046 return o;
17047 }
17048
__pyx_tp_dealloc_2bx_3bbi_8bbi_file_BlockHandler(PyObject * o)17049 static void __pyx_tp_dealloc_2bx_3bbi_8bbi_file_BlockHandler(PyObject *o) {
17050 #if CYTHON_USE_TP_FINALIZE
17051 if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
17052 if (PyObject_CallFinalizerFromDealloc(o)) return;
17053 }
17054 #endif
17055 (*Py_TYPE(o)->tp_free)(o);
17056 }
17057
17058 static PyMethodDef __pyx_methods_2bx_3bbi_8bbi_file_BlockHandler[] = {
17059 {"__reduce_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_12BlockHandler_1__reduce_cython__, METH_NOARGS, 0},
17060 {"__setstate_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_12BlockHandler_3__setstate_cython__, METH_O, 0},
17061 {0, 0, 0, 0}
17062 };
17063
17064 static PyTypeObject __pyx_type_2bx_3bbi_8bbi_file_BlockHandler = {
17065 PyVarObject_HEAD_INIT(0, 0)
17066 "bx.bbi.bbi_file.BlockHandler", /*tp_name*/
17067 sizeof(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler), /*tp_basicsize*/
17068 0, /*tp_itemsize*/
17069 __pyx_tp_dealloc_2bx_3bbi_8bbi_file_BlockHandler, /*tp_dealloc*/
17070 #if PY_VERSION_HEX < 0x030800b4
17071 0, /*tp_print*/
17072 #endif
17073 #if PY_VERSION_HEX >= 0x030800b4
17074 0, /*tp_vectorcall_offset*/
17075 #endif
17076 0, /*tp_getattr*/
17077 0, /*tp_setattr*/
17078 #if PY_MAJOR_VERSION < 3
17079 0, /*tp_compare*/
17080 #endif
17081 #if PY_MAJOR_VERSION >= 3
17082 0, /*tp_as_async*/
17083 #endif
17084 0, /*tp_repr*/
17085 0, /*tp_as_number*/
17086 0, /*tp_as_sequence*/
17087 0, /*tp_as_mapping*/
17088 0, /*tp_hash*/
17089 0, /*tp_call*/
17090 0, /*tp_str*/
17091 0, /*tp_getattro*/
17092 0, /*tp_setattro*/
17093 0, /*tp_as_buffer*/
17094 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
17095 "\n Callback for `BBIFile.visit_blocks_in_region`\n ", /*tp_doc*/
17096 0, /*tp_traverse*/
17097 0, /*tp_clear*/
17098 0, /*tp_richcompare*/
17099 0, /*tp_weaklistoffset*/
17100 0, /*tp_iter*/
17101 0, /*tp_iternext*/
17102 __pyx_methods_2bx_3bbi_8bbi_file_BlockHandler, /*tp_methods*/
17103 0, /*tp_members*/
17104 0, /*tp_getset*/
17105 0, /*tp_base*/
17106 0, /*tp_dict*/
17107 0, /*tp_descr_get*/
17108 0, /*tp_descr_set*/
17109 0, /*tp_dictoffset*/
17110 0, /*tp_init*/
17111 0, /*tp_alloc*/
17112 __pyx_tp_new_2bx_3bbi_8bbi_file_BlockHandler, /*tp_new*/
17113 0, /*tp_free*/
17114 0, /*tp_is_gc*/
17115 0, /*tp_bases*/
17116 0, /*tp_mro*/
17117 0, /*tp_cache*/
17118 0, /*tp_subclasses*/
17119 0, /*tp_weaklist*/
17120 0, /*tp_del*/
17121 0, /*tp_version_tag*/
17122 #if PY_VERSION_HEX >= 0x030400a1
17123 0, /*tp_finalize*/
17124 #endif
17125 #if PY_VERSION_HEX >= 0x030800b1
17126 0, /*tp_vectorcall*/
17127 #endif
17128 #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
17129 0, /*tp_print*/
17130 #endif
17131 #if PY_VERSION_HEX >= 0x030B00A2
17132 0, /*tp_inline_values_offset*/
17133 #endif
17134 };
17135 static struct __pyx_vtabstruct_2bx_3bbi_8bbi_file_ZoomLevel __pyx_vtable_2bx_3bbi_8bbi_file_ZoomLevel;
17136
__pyx_tp_new_2bx_3bbi_8bbi_file_ZoomLevel(PyTypeObject * t,CYTHON_UNUSED PyObject * a,CYTHON_UNUSED PyObject * k)17137 static PyObject *__pyx_tp_new_2bx_3bbi_8bbi_file_ZoomLevel(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
17138 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *p;
17139 PyObject *o;
17140 if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
17141 o = (*t->tp_alloc)(t, 0);
17142 } else {
17143 o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
17144 }
17145 if (unlikely(!o)) return 0;
17146 p = ((struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)o);
17147 p->__pyx_vtab = __pyx_vtabptr_2bx_3bbi_8bbi_file_ZoomLevel;
17148 p->bbi_file = ((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)Py_None); Py_INCREF(Py_None);
17149 return o;
17150 }
17151
__pyx_tp_dealloc_2bx_3bbi_8bbi_file_ZoomLevel(PyObject * o)17152 static void __pyx_tp_dealloc_2bx_3bbi_8bbi_file_ZoomLevel(PyObject *o) {
17153 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *p = (struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)o;
17154 #if CYTHON_USE_TP_FINALIZE
17155 if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
17156 if (PyObject_CallFinalizerFromDealloc(o)) return;
17157 }
17158 #endif
17159 PyObject_GC_UnTrack(o);
17160 Py_CLEAR(p->bbi_file);
17161 (*Py_TYPE(o)->tp_free)(o);
17162 }
17163
__pyx_tp_traverse_2bx_3bbi_8bbi_file_ZoomLevel(PyObject * o,visitproc v,void * a)17164 static int __pyx_tp_traverse_2bx_3bbi_8bbi_file_ZoomLevel(PyObject *o, visitproc v, void *a) {
17165 int e;
17166 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *p = (struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)o;
17167 if (p->bbi_file) {
17168 e = (*v)(((PyObject *)p->bbi_file), a); if (e) return e;
17169 }
17170 return 0;
17171 }
17172
__pyx_tp_clear_2bx_3bbi_8bbi_file_ZoomLevel(PyObject * o)17173 static int __pyx_tp_clear_2bx_3bbi_8bbi_file_ZoomLevel(PyObject *o) {
17174 PyObject* tmp;
17175 struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *p = (struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *)o;
17176 tmp = ((PyObject*)p->bbi_file);
17177 p->bbi_file = ((struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *)Py_None); Py_INCREF(Py_None);
17178 Py_XDECREF(tmp);
17179 return 0;
17180 }
17181
__pyx_getprop_2bx_3bbi_8bbi_file_9ZoomLevel_reduction_level(PyObject * o,CYTHON_UNUSED void * x)17182 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_9ZoomLevel_reduction_level(PyObject *o, CYTHON_UNUSED void *x) {
17183 return __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_1__get__(o);
17184 }
17185
__pyx_setprop_2bx_3bbi_8bbi_file_9ZoomLevel_reduction_level(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)17186 static int __pyx_setprop_2bx_3bbi_8bbi_file_9ZoomLevel_reduction_level(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
17187 if (v) {
17188 return __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_15reduction_level_3__set__(o, v);
17189 }
17190 else {
17191 PyErr_SetString(PyExc_NotImplementedError, "__del__");
17192 return -1;
17193 }
17194 }
17195
__pyx_getprop_2bx_3bbi_8bbi_file_9ZoomLevel_data_offset(PyObject * o,CYTHON_UNUSED void * x)17196 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_9ZoomLevel_data_offset(PyObject *o, CYTHON_UNUSED void *x) {
17197 return __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_1__get__(o);
17198 }
17199
__pyx_setprop_2bx_3bbi_8bbi_file_9ZoomLevel_data_offset(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)17200 static int __pyx_setprop_2bx_3bbi_8bbi_file_9ZoomLevel_data_offset(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
17201 if (v) {
17202 return __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_11data_offset_3__set__(o, v);
17203 }
17204 else {
17205 PyErr_SetString(PyExc_NotImplementedError, "__del__");
17206 return -1;
17207 }
17208 }
17209
__pyx_getprop_2bx_3bbi_8bbi_file_9ZoomLevel_index_offset(PyObject * o,CYTHON_UNUSED void * x)17210 static PyObject *__pyx_getprop_2bx_3bbi_8bbi_file_9ZoomLevel_index_offset(PyObject *o, CYTHON_UNUSED void *x) {
17211 return __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_1__get__(o);
17212 }
17213
__pyx_setprop_2bx_3bbi_8bbi_file_9ZoomLevel_index_offset(PyObject * o,PyObject * v,CYTHON_UNUSED void * x)17214 static int __pyx_setprop_2bx_3bbi_8bbi_file_9ZoomLevel_index_offset(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
17215 if (v) {
17216 return __pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_12index_offset_3__set__(o, v);
17217 }
17218 else {
17219 PyErr_SetString(PyExc_NotImplementedError, "__del__");
17220 return -1;
17221 }
17222 }
17223
17224 static PyMethodDef __pyx_methods_2bx_3bbi_8bbi_file_ZoomLevel[] = {
17225 {"_summary_blocks_in_region", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_1_summary_blocks_in_region, METH_VARARGS|METH_KEYWORDS, __pyx_doc_2bx_3bbi_8bbi_file_9ZoomLevel__summary_blocks_in_region},
17226 {"__reduce_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_3__reduce_cython__, METH_NOARGS, 0},
17227 {"__setstate_cython__", (PyCFunction)__pyx_pw_2bx_3bbi_8bbi_file_9ZoomLevel_5__setstate_cython__, METH_O, 0},
17228 {0, 0, 0, 0}
17229 };
17230
17231 static struct PyGetSetDef __pyx_getsets_2bx_3bbi_8bbi_file_ZoomLevel[] = {
17232 {(char *)"reduction_level", __pyx_getprop_2bx_3bbi_8bbi_file_9ZoomLevel_reduction_level, __pyx_setprop_2bx_3bbi_8bbi_file_9ZoomLevel_reduction_level, (char *)0, 0},
17233 {(char *)"data_offset", __pyx_getprop_2bx_3bbi_8bbi_file_9ZoomLevel_data_offset, __pyx_setprop_2bx_3bbi_8bbi_file_9ZoomLevel_data_offset, (char *)0, 0},
17234 {(char *)"index_offset", __pyx_getprop_2bx_3bbi_8bbi_file_9ZoomLevel_index_offset, __pyx_setprop_2bx_3bbi_8bbi_file_9ZoomLevel_index_offset, (char *)0, 0},
17235 {0, 0, 0, 0, 0}
17236 };
17237
17238 static PyTypeObject __pyx_type_2bx_3bbi_8bbi_file_ZoomLevel = {
17239 PyVarObject_HEAD_INIT(0, 0)
17240 "bx.bbi.bbi_file.ZoomLevel", /*tp_name*/
17241 sizeof(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel), /*tp_basicsize*/
17242 0, /*tp_itemsize*/
17243 __pyx_tp_dealloc_2bx_3bbi_8bbi_file_ZoomLevel, /*tp_dealloc*/
17244 #if PY_VERSION_HEX < 0x030800b4
17245 0, /*tp_print*/
17246 #endif
17247 #if PY_VERSION_HEX >= 0x030800b4
17248 0, /*tp_vectorcall_offset*/
17249 #endif
17250 0, /*tp_getattr*/
17251 0, /*tp_setattr*/
17252 #if PY_MAJOR_VERSION < 3
17253 0, /*tp_compare*/
17254 #endif
17255 #if PY_MAJOR_VERSION >= 3
17256 0, /*tp_as_async*/
17257 #endif
17258 0, /*tp_repr*/
17259 0, /*tp_as_number*/
17260 0, /*tp_as_sequence*/
17261 0, /*tp_as_mapping*/
17262 0, /*tp_hash*/
17263 0, /*tp_call*/
17264 0, /*tp_str*/
17265 0, /*tp_getattro*/
17266 0, /*tp_setattro*/
17267 0, /*tp_as_buffer*/
17268 Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
17269 0, /*tp_doc*/
17270 __pyx_tp_traverse_2bx_3bbi_8bbi_file_ZoomLevel, /*tp_traverse*/
17271 __pyx_tp_clear_2bx_3bbi_8bbi_file_ZoomLevel, /*tp_clear*/
17272 0, /*tp_richcompare*/
17273 0, /*tp_weaklistoffset*/
17274 0, /*tp_iter*/
17275 0, /*tp_iternext*/
17276 __pyx_methods_2bx_3bbi_8bbi_file_ZoomLevel, /*tp_methods*/
17277 0, /*tp_members*/
17278 __pyx_getsets_2bx_3bbi_8bbi_file_ZoomLevel, /*tp_getset*/
17279 0, /*tp_base*/
17280 0, /*tp_dict*/
17281 0, /*tp_descr_get*/
17282 0, /*tp_descr_set*/
17283 0, /*tp_dictoffset*/
17284 0, /*tp_init*/
17285 0, /*tp_alloc*/
17286 __pyx_tp_new_2bx_3bbi_8bbi_file_ZoomLevel, /*tp_new*/
17287 0, /*tp_free*/
17288 0, /*tp_is_gc*/
17289 0, /*tp_bases*/
17290 0, /*tp_mro*/
17291 0, /*tp_cache*/
17292 0, /*tp_subclasses*/
17293 0, /*tp_weaklist*/
17294 0, /*tp_del*/
17295 0, /*tp_version_tag*/
17296 #if PY_VERSION_HEX >= 0x030400a1
17297 0, /*tp_finalize*/
17298 #endif
17299 #if PY_VERSION_HEX >= 0x030800b1
17300 0, /*tp_vectorcall*/
17301 #endif
17302 #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
17303 0, /*tp_print*/
17304 #endif
17305 #if PY_VERSION_HEX >= 0x030B00A2
17306 0, /*tp_inline_values_offset*/
17307 #endif
17308 };
17309
17310 static PyMethodDef __pyx_methods[] = {
17311 {0, 0, 0, 0}
17312 };
17313
17314 #if PY_MAJOR_VERSION >= 3
17315 #if CYTHON_PEP489_MULTI_PHASE_INIT
17316 static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/
17317 static int __pyx_pymod_exec_bbi_file(PyObject* module); /*proto*/
17318 static PyModuleDef_Slot __pyx_moduledef_slots[] = {
17319 {Py_mod_create, (void*)__pyx_pymod_create},
17320 {Py_mod_exec, (void*)__pyx_pymod_exec_bbi_file},
17321 {0, NULL}
17322 };
17323 #endif
17324
17325 static struct PyModuleDef __pyx_moduledef = {
17326 PyModuleDef_HEAD_INIT,
17327 "bbi_file",
17328 __pyx_k_Core_implementation_for_reading, /* m_doc */
17329 #if CYTHON_PEP489_MULTI_PHASE_INIT
17330 0, /* m_size */
17331 #else
17332 -1, /* m_size */
17333 #endif
17334 __pyx_methods /* m_methods */,
17335 #if CYTHON_PEP489_MULTI_PHASE_INIT
17336 __pyx_moduledef_slots, /* m_slots */
17337 #else
17338 NULL, /* m_reload */
17339 #endif
17340 NULL, /* m_traverse */
17341 NULL, /* m_clear */
17342 NULL /* m_free */
17343 };
17344 #endif
17345 #ifndef CYTHON_SMALL_CODE
17346 #if defined(__clang__)
17347 #define CYTHON_SMALL_CODE
17348 #elif defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3))
17349 #define CYTHON_SMALL_CODE __attribute__((cold))
17350 #else
17351 #define CYTHON_SMALL_CODE
17352 #endif
17353 #endif
17354
17355 static __Pyx_StringTabEntry __pyx_string_tab[] = {
17356 {&__pyx_n_s_BBIFile, __pyx_k_BBIFile, sizeof(__pyx_k_BBIFile), 0, 0, 1, 1},
17357 {&__pyx_n_s_BinaryFileReader, __pyx_k_BinaryFileReader, sizeof(__pyx_k_BinaryFileReader), 0, 0, 1, 1},
17358 {&__pyx_n_s_BlockHandler, __pyx_k_BlockHandler, sizeof(__pyx_k_BlockHandler), 0, 0, 1, 1},
17359 {&__pyx_n_s_BytesIO, __pyx_k_BytesIO, sizeof(__pyx_k_BytesIO), 0, 0, 1, 1},
17360 {&__pyx_n_s_II, __pyx_k_II, sizeof(__pyx_k_II), 0, 0, 1, 1},
17361 {&__pyx_n_s_ImportError, __pyx_k_ImportError, sizeof(__pyx_k_ImportError), 0, 0, 1, 1},
17362 {&__pyx_kp_s_Incompatible_checksums_s_vs_0x36, __pyx_k_Incompatible_checksums_s_vs_0x36, sizeof(__pyx_k_Incompatible_checksums_s_vs_0x36), 0, 0, 1, 0},
17363 {&__pyx_kp_s_Incompatible_checksums_s_vs_0x55, __pyx_k_Incompatible_checksums_s_vs_0x55, sizeof(__pyx_k_Incompatible_checksums_s_vs_0x55), 0, 0, 1, 0},
17364 {&__pyx_kp_s_Incompatible_checksums_s_vs_0x73, __pyx_k_Incompatible_checksums_s_vs_0x73, sizeof(__pyx_k_Incompatible_checksums_s_vs_0x73), 0, 0, 1, 0},
17365 {&__pyx_kp_s_Incompatible_checksums_s_vs_0xd4, __pyx_k_Incompatible_checksums_s_vs_0xd4, sizeof(__pyx_k_Incompatible_checksums_s_vs_0xd4), 0, 0, 1, 0},
17366 {&__pyx_kp_s_Incompatible_checksums_s_vs_0xf7, __pyx_k_Incompatible_checksums_s_vs_0xf7, sizeof(__pyx_k_Incompatible_checksums_s_vs_0xf7), 0, 0, 1, 0},
17367 {&__pyx_n_s_PickleError, __pyx_k_PickleError, sizeof(__pyx_k_PickleError), 0, 0, 1, 1},
17368 {&__pyx_n_s_SummarizedData, __pyx_k_SummarizedData, sizeof(__pyx_k_SummarizedData), 0, 0, 1, 1},
17369 {&__pyx_n_s_SummaryBlock, __pyx_k_SummaryBlock, sizeof(__pyx_k_SummaryBlock), 0, 0, 1, 1},
17370 {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1},
17371 {&__pyx_n_s_ZoomLevel, __pyx_k_ZoomLevel, sizeof(__pyx_k_ZoomLevel), 0, 0, 1, 1},
17372 {&__pyx_n_s_append, __pyx_k_append, sizeof(__pyx_k_append), 0, 0, 1, 1},
17373 {&__pyx_n_s_bx_bbi_bbi_file, __pyx_k_bx_bbi_bbi_file, sizeof(__pyx_k_bx_bbi_bbi_file), 0, 0, 1, 1},
17374 {&__pyx_n_s_bx_misc_binary_file, __pyx_k_bx_misc_binary_file, sizeof(__pyx_k_bx_misc_binary_file), 0, 0, 1, 1},
17375 {&__pyx_n_s_byteswap_needed, __pyx_k_byteswap_needed, sizeof(__pyx_k_byteswap_needed), 0, 0, 1, 1},
17376 {&__pyx_n_s_chrom, __pyx_k_chrom, sizeof(__pyx_k_chrom), 0, 0, 1, 1},
17377 {&__pyx_n_s_chrom_id, __pyx_k_chrom_id, sizeof(__pyx_k_chrom_id), 0, 0, 1, 1},
17378 {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1},
17379 {&__pyx_n_s_collections, __pyx_k_collections, sizeof(__pyx_k_collections), 0, 0, 1, 1},
17380 {&__pyx_n_s_coverage, __pyx_k_coverage, sizeof(__pyx_k_coverage), 0, 0, 1, 1},
17381 {&__pyx_n_s_decompress, __pyx_k_decompress, sizeof(__pyx_k_decompress), 0, 0, 1, 1},
17382 {&__pyx_n_s_deque, __pyx_k_deque, sizeof(__pyx_k_deque), 0, 0, 1, 1},
17383 {&__pyx_n_s_dict, __pyx_k_dict, sizeof(__pyx_k_dict), 0, 0, 1, 1},
17384 {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1},
17385 {&__pyx_n_s_encode, __pyx_k_encode, sizeof(__pyx_k_encode), 0, 0, 1, 1},
17386 {&__pyx_n_s_end, __pyx_k_end, sizeof(__pyx_k_end), 0, 0, 1, 1},
17387 {&__pyx_n_s_expected_sig, __pyx_k_expected_sig, sizeof(__pyx_k_expected_sig), 0, 0, 1, 1},
17388 {&__pyx_n_s_file, __pyx_k_file, sizeof(__pyx_k_file), 0, 0, 1, 1},
17389 {&__pyx_n_s_find, __pyx_k_find, sizeof(__pyx_k_find), 0, 0, 1, 1},
17390 {&__pyx_n_s_find_overlapping_blocks, __pyx_k_find_overlapping_blocks, sizeof(__pyx_k_find_overlapping_blocks), 0, 0, 1, 1},
17391 {&__pyx_n_s_float64, __pyx_k_float64, sizeof(__pyx_k_float64), 0, 0, 1, 1},
17392 {&__pyx_n_s_getstate, __pyx_k_getstate, sizeof(__pyx_k_getstate), 0, 0, 1, 1},
17393 {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1},
17394 {&__pyx_n_s_io, __pyx_k_io, sizeof(__pyx_k_io), 0, 0, 1, 1},
17395 {&__pyx_n_s_is_little_endian, __pyx_k_is_little_endian, sizeof(__pyx_k_is_little_endian), 0, 0, 1, 1},
17396 {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1},
17397 {&__pyx_n_s_math, __pyx_k_math, sizeof(__pyx_k_math), 0, 0, 1, 1},
17398 {&__pyx_n_s_max, __pyx_k_max, sizeof(__pyx_k_max), 0, 0, 1, 1},
17399 {&__pyx_n_s_max_val, __pyx_k_max_val, sizeof(__pyx_k_max_val), 0, 0, 1, 1},
17400 {&__pyx_n_s_mean, __pyx_k_mean, sizeof(__pyx_k_mean), 0, 0, 1, 1},
17401 {&__pyx_n_s_min, __pyx_k_min, sizeof(__pyx_k_min), 0, 0, 1, 1},
17402 {&__pyx_n_s_min_val, __pyx_k_min_val, sizeof(__pyx_k_min_val), 0, 0, 1, 1},
17403 {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1},
17404 {&__pyx_n_s_nan, __pyx_k_nan, sizeof(__pyx_k_nan), 0, 0, 1, 1},
17405 {&__pyx_n_s_new, __pyx_k_new, sizeof(__pyx_k_new), 0, 0, 1, 1},
17406 {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1},
17407 {&__pyx_kp_s_numpy_core_multiarray_failed_to, __pyx_k_numpy_core_multiarray_failed_to, sizeof(__pyx_k_numpy_core_multiarray_failed_to), 0, 0, 1, 0},
17408 {&__pyx_kp_s_numpy_core_umath_failed_to_impor, __pyx_k_numpy_core_umath_failed_to_impor, sizeof(__pyx_k_numpy_core_umath_failed_to_impor), 0, 0, 1, 0},
17409 {&__pyx_n_s_open, __pyx_k_open, sizeof(__pyx_k_open), 0, 0, 1, 1},
17410 {&__pyx_n_s_pickle, __pyx_k_pickle, sizeof(__pyx_k_pickle), 0, 0, 1, 1},
17411 {&__pyx_n_s_popleft, __pyx_k_popleft, sizeof(__pyx_k_popleft), 0, 0, 1, 1},
17412 {&__pyx_n_s_pyx_PickleError, __pyx_k_pyx_PickleError, sizeof(__pyx_k_pyx_PickleError), 0, 0, 1, 1},
17413 {&__pyx_n_s_pyx_checksum, __pyx_k_pyx_checksum, sizeof(__pyx_k_pyx_checksum), 0, 0, 1, 1},
17414 {&__pyx_n_s_pyx_result, __pyx_k_pyx_result, sizeof(__pyx_k_pyx_result), 0, 0, 1, 1},
17415 {&__pyx_n_s_pyx_state, __pyx_k_pyx_state, sizeof(__pyx_k_pyx_state), 0, 0, 1, 1},
17416 {&__pyx_n_s_pyx_type, __pyx_k_pyx_type, sizeof(__pyx_k_pyx_type), 0, 0, 1, 1},
17417 {&__pyx_n_s_pyx_unpickle_BBIFile, __pyx_k_pyx_unpickle_BBIFile, sizeof(__pyx_k_pyx_unpickle_BBIFile), 0, 0, 1, 1},
17418 {&__pyx_n_s_pyx_unpickle_BlockHandler, __pyx_k_pyx_unpickle_BlockHandler, sizeof(__pyx_k_pyx_unpickle_BlockHandler), 0, 0, 1, 1},
17419 {&__pyx_n_s_pyx_unpickle_SummarizedData, __pyx_k_pyx_unpickle_SummarizedData, sizeof(__pyx_k_pyx_unpickle_SummarizedData), 0, 0, 1, 1},
17420 {&__pyx_n_s_pyx_unpickle_SummaryBlock, __pyx_k_pyx_unpickle_SummaryBlock, sizeof(__pyx_k_pyx_unpickle_SummaryBlock), 0, 0, 1, 1},
17421 {&__pyx_n_s_pyx_unpickle_ZoomLevel, __pyx_k_pyx_unpickle_ZoomLevel, sizeof(__pyx_k_pyx_unpickle_ZoomLevel), 0, 0, 1, 1},
17422 {&__pyx_n_s_pyx_vtable, __pyx_k_pyx_vtable, sizeof(__pyx_k_pyx_vtable), 0, 0, 1, 1},
17423 {&__pyx_n_s_query, __pyx_k_query, sizeof(__pyx_k_query), 0, 0, 1, 1},
17424 {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1},
17425 {&__pyx_n_s_read, __pyx_k_read, sizeof(__pyx_k_read), 0, 0, 1, 1},
17426 {&__pyx_n_s_read_float, __pyx_k_read_float, sizeof(__pyx_k_read_float), 0, 0, 1, 1},
17427 {&__pyx_n_s_read_uint16, __pyx_k_read_uint16, sizeof(__pyx_k_read_uint16), 0, 0, 1, 1},
17428 {&__pyx_n_s_read_uint32, __pyx_k_read_uint32, sizeof(__pyx_k_read_uint32), 0, 0, 1, 1},
17429 {&__pyx_n_s_read_uint64, __pyx_k_read_uint64, sizeof(__pyx_k_read_uint64), 0, 0, 1, 1},
17430 {&__pyx_n_s_reduce, __pyx_k_reduce, sizeof(__pyx_k_reduce), 0, 0, 1, 1},
17431 {&__pyx_n_s_reduce_cython, __pyx_k_reduce_cython, sizeof(__pyx_k_reduce_cython), 0, 0, 1, 1},
17432 {&__pyx_n_s_reduce_ex, __pyx_k_reduce_ex, sizeof(__pyx_k_reduce_ex), 0, 0, 1, 1},
17433 {&__pyx_n_s_seek, __pyx_k_seek, sizeof(__pyx_k_seek), 0, 0, 1, 1},
17434 {&__pyx_n_s_setstate, __pyx_k_setstate, sizeof(__pyx_k_setstate), 0, 0, 1, 1},
17435 {&__pyx_n_s_setstate_cython, __pyx_k_setstate_cython, sizeof(__pyx_k_setstate_cython), 0, 0, 1, 1},
17436 {&__pyx_n_s_size, __pyx_k_size, sizeof(__pyx_k_size), 0, 0, 1, 1},
17437 {&__pyx_n_s_skip, __pyx_k_skip, sizeof(__pyx_k_skip), 0, 0, 1, 1},
17438 {&__pyx_n_s_sqrt, __pyx_k_sqrt, sizeof(__pyx_k_sqrt), 0, 0, 1, 1},
17439 {&__pyx_n_s_start, __pyx_k_start, sizeof(__pyx_k_start), 0, 0, 1, 1},
17440 {&__pyx_n_s_std_dev, __pyx_k_std_dev, sizeof(__pyx_k_std_dev), 0, 0, 1, 1},
17441 {&__pyx_kp_s_stringsource, __pyx_k_stringsource, sizeof(__pyx_k_stringsource), 0, 0, 1, 0},
17442 {&__pyx_n_s_sum_data, __pyx_k_sum_data, sizeof(__pyx_k_sum_data), 0, 0, 1, 1},
17443 {&__pyx_n_s_sum_squares, __pyx_k_sum_squares, sizeof(__pyx_k_sum_squares), 0, 0, 1, 1},
17444 {&__pyx_n_s_summarize, __pyx_k_summarize, sizeof(__pyx_k_summarize), 0, 0, 1, 1},
17445 {&__pyx_n_s_summarize_from_full, __pyx_k_summarize_from_full, sizeof(__pyx_k_summarize_from_full), 0, 0, 1, 1},
17446 {&__pyx_n_s_summary_blocks_in_region, __pyx_k_summary_blocks_in_region, sizeof(__pyx_k_summary_blocks_in_region), 0, 0, 1, 1},
17447 {&__pyx_n_s_summary_size, __pyx_k_summary_size, sizeof(__pyx_k_summary_size), 0, 0, 1, 1},
17448 {&__pyx_n_s_sys, __pyx_k_sys, sizeof(__pyx_k_sys), 0, 0, 1, 1},
17449 {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1},
17450 {&__pyx_n_s_type_name, __pyx_k_type_name, sizeof(__pyx_k_type_name), 0, 0, 1, 1},
17451 {&__pyx_n_s_unpack, __pyx_k_unpack, sizeof(__pyx_k_unpack), 0, 0, 1, 1},
17452 {&__pyx_n_s_update, __pyx_k_update, sizeof(__pyx_k_update), 0, 0, 1, 1},
17453 {&__pyx_n_s_valid_count, __pyx_k_valid_count, sizeof(__pyx_k_valid_count), 0, 0, 1, 1},
17454 {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1},
17455 {&__pyx_n_s_zlib, __pyx_k_zlib, sizeof(__pyx_k_zlib), 0, 0, 1, 1},
17456 {0, 0, 0, 0, 0, 0, 0}
17457 };
__Pyx_InitCachedBuiltins(void)17458 static CYTHON_SMALL_CODE int __Pyx_InitCachedBuiltins(void) {
17459 __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(0, 234, __pyx_L1_error)
17460 __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) __PYX_ERR(0, 241, __pyx_L1_error)
17461 __pyx_builtin_ImportError = __Pyx_GetBuiltinName(__pyx_n_s_ImportError); if (!__pyx_builtin_ImportError) __PYX_ERR(3, 945, __pyx_L1_error)
17462 return 0;
17463 __pyx_L1_error:;
17464 return -1;
17465 }
17466
__Pyx_InitCachedConstants(void)17467 static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) {
17468 __Pyx_RefNannyDeclarations
17469 __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);
17470
17471 /* "bx/bbi/bbi_file.pyx":269
17472 * return chrom_id, chrom_size
17473 * else:
17474 * return None, None # <<<<<<<<<<<<<<
17475 *
17476 * cdef _summarize_from_full( self, bits32 chrom_id, bits32 start, bits32 end, int summary_size ):
17477 */
17478 __pyx_tuple_ = PyTuple_Pack(2, Py_None, Py_None); if (unlikely(!__pyx_tuple_)) __PYX_ERR(0, 269, __pyx_L1_error)
17479 __Pyx_GOTREF(__pyx_tuple_);
17480 __Pyx_GIVEREF(__pyx_tuple_);
17481
17482 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":945
17483 * __pyx_import_array()
17484 * except Exception:
17485 * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
17486 *
17487 * cdef inline int import_umath() except -1:
17488 */
17489 __pyx_tuple__2 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_multiarray_failed_to); if (unlikely(!__pyx_tuple__2)) __PYX_ERR(3, 945, __pyx_L1_error)
17490 __Pyx_GOTREF(__pyx_tuple__2);
17491 __Pyx_GIVEREF(__pyx_tuple__2);
17492
17493 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":951
17494 * _import_umath()
17495 * except Exception:
17496 * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
17497 *
17498 * cdef inline int import_ufunc() except -1:
17499 */
17500 __pyx_tuple__3 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_umath_failed_to_impor); if (unlikely(!__pyx_tuple__3)) __PYX_ERR(3, 951, __pyx_L1_error)
17501 __Pyx_GOTREF(__pyx_tuple__3);
17502 __Pyx_GIVEREF(__pyx_tuple__3);
17503
17504 /* "(tree fragment)":1
17505 * def __pyx_unpickle_SummaryBlock(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
17506 * cdef object __pyx_PickleError
17507 * cdef object __pyx_result
17508 */
17509 __pyx_tuple__4 = PyTuple_Pack(5, __pyx_n_s_pyx_type, __pyx_n_s_pyx_checksum, __pyx_n_s_pyx_state, __pyx_n_s_pyx_PickleError, __pyx_n_s_pyx_result); if (unlikely(!__pyx_tuple__4)) __PYX_ERR(2, 1, __pyx_L1_error)
17510 __Pyx_GOTREF(__pyx_tuple__4);
17511 __Pyx_GIVEREF(__pyx_tuple__4);
17512 __pyx_codeobj__5 = (PyObject*)__Pyx_PyCode_New(3, 0, 5, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__4, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_pyx_unpickle_SummaryBlock, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__5)) __PYX_ERR(2, 1, __pyx_L1_error)
17513 __pyx_tuple__6 = PyTuple_Pack(5, __pyx_n_s_pyx_type, __pyx_n_s_pyx_checksum, __pyx_n_s_pyx_state, __pyx_n_s_pyx_PickleError, __pyx_n_s_pyx_result); if (unlikely(!__pyx_tuple__6)) __PYX_ERR(2, 1, __pyx_L1_error)
17514 __Pyx_GOTREF(__pyx_tuple__6);
17515 __Pyx_GIVEREF(__pyx_tuple__6);
17516 __pyx_codeobj__7 = (PyObject*)__Pyx_PyCode_New(3, 0, 5, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__6, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_pyx_unpickle_SummarizedData, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__7)) __PYX_ERR(2, 1, __pyx_L1_error)
17517 __pyx_tuple__8 = PyTuple_Pack(5, __pyx_n_s_pyx_type, __pyx_n_s_pyx_checksum, __pyx_n_s_pyx_state, __pyx_n_s_pyx_PickleError, __pyx_n_s_pyx_result); if (unlikely(!__pyx_tuple__8)) __PYX_ERR(2, 1, __pyx_L1_error)
17518 __Pyx_GOTREF(__pyx_tuple__8);
17519 __Pyx_GIVEREF(__pyx_tuple__8);
17520 __pyx_codeobj__9 = (PyObject*)__Pyx_PyCode_New(3, 0, 5, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__8, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_pyx_unpickle_BlockHandler, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__9)) __PYX_ERR(2, 1, __pyx_L1_error)
17521 __pyx_tuple__10 = PyTuple_Pack(5, __pyx_n_s_pyx_type, __pyx_n_s_pyx_checksum, __pyx_n_s_pyx_state, __pyx_n_s_pyx_PickleError, __pyx_n_s_pyx_result); if (unlikely(!__pyx_tuple__10)) __PYX_ERR(2, 1, __pyx_L1_error)
17522 __Pyx_GOTREF(__pyx_tuple__10);
17523 __Pyx_GIVEREF(__pyx_tuple__10);
17524 __pyx_codeobj__11 = (PyObject*)__Pyx_PyCode_New(3, 0, 5, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__10, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_pyx_unpickle_BBIFile, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__11)) __PYX_ERR(2, 1, __pyx_L1_error)
17525 __pyx_tuple__12 = PyTuple_Pack(5, __pyx_n_s_pyx_type, __pyx_n_s_pyx_checksum, __pyx_n_s_pyx_state, __pyx_n_s_pyx_PickleError, __pyx_n_s_pyx_result); if (unlikely(!__pyx_tuple__12)) __PYX_ERR(2, 1, __pyx_L1_error)
17526 __Pyx_GOTREF(__pyx_tuple__12);
17527 __Pyx_GIVEREF(__pyx_tuple__12);
17528 __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 5, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_pyx_unpickle_ZoomLevel, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) __PYX_ERR(2, 1, __pyx_L1_error)
17529 __Pyx_RefNannyFinishContext();
17530 return 0;
17531 __pyx_L1_error:;
17532 __Pyx_RefNannyFinishContext();
17533 return -1;
17534 }
17535
__Pyx_InitGlobals(void)17536 static CYTHON_SMALL_CODE int __Pyx_InitGlobals(void) {
17537 if (__Pyx_InitStrings(__pyx_string_tab) < 0) __PYX_ERR(0, 1, __pyx_L1_error);
17538 __pyx_int_0 = PyInt_FromLong(0); if (unlikely(!__pyx_int_0)) __PYX_ERR(0, 1, __pyx_L1_error)
17539 __pyx_int_1 = PyInt_FromLong(1); if (unlikely(!__pyx_int_1)) __PYX_ERR(0, 1, __pyx_L1_error)
17540 __pyx_int_28 = PyInt_FromLong(28); if (unlikely(!__pyx_int_28)) __PYX_ERR(0, 1, __pyx_L1_error)
17541 __pyx_int_32 = PyInt_FromLong(32); if (unlikely(!__pyx_int_32)) __PYX_ERR(0, 1, __pyx_L1_error)
17542 __pyx_int_64 = PyInt_FromLong(64); if (unlikely(!__pyx_int_64)) __PYX_ERR(0, 1, __pyx_L1_error)
17543 __pyx_int_57037653 = PyInt_FromLong(57037653L); if (unlikely(!__pyx_int_57037653)) __PYX_ERR(0, 1, __pyx_L1_error)
17544 __pyx_int_89548920 = PyInt_FromLong(89548920L); if (unlikely(!__pyx_int_89548920)) __PYX_ERR(0, 1, __pyx_L1_error)
17545 __pyx_int_120770442 = PyInt_FromLong(120770442L); if (unlikely(!__pyx_int_120770442)) __PYX_ERR(0, 1, __pyx_L1_error)
17546 __pyx_int_222419149 = PyInt_FromLong(222419149L); if (unlikely(!__pyx_int_222419149)) __PYX_ERR(0, 1, __pyx_L1_error)
17547 __pyx_int_259536735 = PyInt_FromLong(259536735L); if (unlikely(!__pyx_int_259536735)) __PYX_ERR(0, 1, __pyx_L1_error)
17548 return 0;
17549 __pyx_L1_error:;
17550 return -1;
17551 }
17552
17553 static CYTHON_SMALL_CODE int __Pyx_modinit_global_init_code(void); /*proto*/
17554 static CYTHON_SMALL_CODE int __Pyx_modinit_variable_export_code(void); /*proto*/
17555 static CYTHON_SMALL_CODE int __Pyx_modinit_function_export_code(void); /*proto*/
17556 static CYTHON_SMALL_CODE int __Pyx_modinit_type_init_code(void); /*proto*/
17557 static CYTHON_SMALL_CODE int __Pyx_modinit_type_import_code(void); /*proto*/
17558 static CYTHON_SMALL_CODE int __Pyx_modinit_variable_import_code(void); /*proto*/
17559 static CYTHON_SMALL_CODE int __Pyx_modinit_function_import_code(void); /*proto*/
17560
__Pyx_modinit_global_init_code(void)17561 static int __Pyx_modinit_global_init_code(void) {
17562 __Pyx_RefNannyDeclarations
17563 __Pyx_RefNannySetupContext("__Pyx_modinit_global_init_code", 0);
17564 /*--- Global init code ---*/
17565 __Pyx_RefNannyFinishContext();
17566 return 0;
17567 }
17568
__Pyx_modinit_variable_export_code(void)17569 static int __Pyx_modinit_variable_export_code(void) {
17570 __Pyx_RefNannyDeclarations
17571 __Pyx_RefNannySetupContext("__Pyx_modinit_variable_export_code", 0);
17572 /*--- Variable export code ---*/
17573 __Pyx_RefNannyFinishContext();
17574 return 0;
17575 }
17576
__Pyx_modinit_function_export_code(void)17577 static int __Pyx_modinit_function_export_code(void) {
17578 __Pyx_RefNannyDeclarations
17579 __Pyx_RefNannySetupContext("__Pyx_modinit_function_export_code", 0);
17580 /*--- Function export code ---*/
17581 __Pyx_RefNannyFinishContext();
17582 return 0;
17583 }
17584
__Pyx_modinit_type_init_code(void)17585 static int __Pyx_modinit_type_init_code(void) {
17586 __Pyx_RefNannyDeclarations
17587 int __pyx_lineno = 0;
17588 const char *__pyx_filename = NULL;
17589 int __pyx_clineno = 0;
17590 __Pyx_RefNannySetupContext("__Pyx_modinit_type_init_code", 0);
17591 /*--- Type init code ---*/
17592 if (PyType_Ready(&__pyx_type_2bx_3bbi_8bbi_file_SummaryBlock) < 0) __PYX_ERR(0, 56, __pyx_L1_error)
17593 #if PY_VERSION_HEX < 0x030800B1
17594 __pyx_type_2bx_3bbi_8bbi_file_SummaryBlock.tp_print = 0;
17595 #endif
17596 if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_2bx_3bbi_8bbi_file_SummaryBlock.tp_dictoffset && __pyx_type_2bx_3bbi_8bbi_file_SummaryBlock.tp_getattro == PyObject_GenericGetAttr)) {
17597 __pyx_type_2bx_3bbi_8bbi_file_SummaryBlock.tp_getattro = __Pyx_PyObject_GenericGetAttr;
17598 }
17599 if (PyObject_SetAttr(__pyx_m, __pyx_n_s_SummaryBlock, (PyObject *)&__pyx_type_2bx_3bbi_8bbi_file_SummaryBlock) < 0) __PYX_ERR(0, 56, __pyx_L1_error)
17600 if (__Pyx_setup_reduce((PyObject*)&__pyx_type_2bx_3bbi_8bbi_file_SummaryBlock) < 0) __PYX_ERR(0, 56, __pyx_L1_error)
17601 __pyx_ptype_2bx_3bbi_8bbi_file_SummaryBlock = &__pyx_type_2bx_3bbi_8bbi_file_SummaryBlock;
17602 __pyx_vtabptr_2bx_3bbi_8bbi_file_SummarizedData = &__pyx_vtable_2bx_3bbi_8bbi_file_SummarizedData;
17603 __pyx_vtable_2bx_3bbi_8bbi_file_SummarizedData.accumulate_interval_value = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_SummarizedData *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, float))__pyx_f_2bx_3bbi_8bbi_file_14SummarizedData_accumulate_interval_value;
17604 if (PyType_Ready(&__pyx_type_2bx_3bbi_8bbi_file_SummarizedData) < 0) __PYX_ERR(0, 62, __pyx_L1_error)
17605 #if PY_VERSION_HEX < 0x030800B1
17606 __pyx_type_2bx_3bbi_8bbi_file_SummarizedData.tp_print = 0;
17607 #endif
17608 if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_2bx_3bbi_8bbi_file_SummarizedData.tp_dictoffset && __pyx_type_2bx_3bbi_8bbi_file_SummarizedData.tp_getattro == PyObject_GenericGetAttr)) {
17609 __pyx_type_2bx_3bbi_8bbi_file_SummarizedData.tp_getattro = __Pyx_PyObject_GenericGetAttr;
17610 }
17611 if (__Pyx_SetVtable(__pyx_type_2bx_3bbi_8bbi_file_SummarizedData.tp_dict, __pyx_vtabptr_2bx_3bbi_8bbi_file_SummarizedData) < 0) __PYX_ERR(0, 62, __pyx_L1_error)
17612 if (PyObject_SetAttr(__pyx_m, __pyx_n_s_SummarizedData, (PyObject *)&__pyx_type_2bx_3bbi_8bbi_file_SummarizedData) < 0) __PYX_ERR(0, 62, __pyx_L1_error)
17613 if (__Pyx_setup_reduce((PyObject*)&__pyx_type_2bx_3bbi_8bbi_file_SummarizedData) < 0) __PYX_ERR(0, 62, __pyx_L1_error)
17614 __pyx_ptype_2bx_3bbi_8bbi_file_SummarizedData = &__pyx_type_2bx_3bbi_8bbi_file_SummarizedData;
17615 __pyx_vtabptr_2bx_3bbi_8bbi_file_BBIFile = &__pyx_vtable_2bx_3bbi_8bbi_file_BBIFile;
17616 __pyx_vtable_2bx_3bbi_8bbi_file_BBIFile.visit_blocks_in_region = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *))__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_visit_blocks_in_region;
17617 __pyx_vtable_2bx_3bbi_8bbi_file_BBIFile._get_chrom_id_and_size = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, char *))__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__get_chrom_id_and_size;
17618 __pyx_vtable_2bx_3bbi_8bbi_file_BBIFile._best_zoom_level = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, int))__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__best_zoom_level;
17619 __pyx_vtable_2bx_3bbi_8bbi_file_BBIFile.summarize = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, PyObject *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int, int __pyx_skip_dispatch))__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize;
17620 __pyx_vtable_2bx_3bbi_8bbi_file_BBIFile.summarize_from_full = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, char *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int, int __pyx_skip_dispatch))__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_summarize_from_full;
17621 __pyx_vtable_2bx_3bbi_8bbi_file_BBIFile.query = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, PyObject *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int, int __pyx_skip_dispatch))__pyx_f_2bx_3bbi_8bbi_file_7BBIFile_query;
17622 __pyx_vtable_2bx_3bbi_8bbi_file_BBIFile._summarize_from_full = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int))__pyx_f_2bx_3bbi_8bbi_file_7BBIFile__summarize_from_full;
17623 if (PyType_Ready(&__pyx_type_2bx_3bbi_8bbi_file_BBIFile) < 0) __PYX_ERR(0, 116, __pyx_L1_error)
17624 #if PY_VERSION_HEX < 0x030800B1
17625 __pyx_type_2bx_3bbi_8bbi_file_BBIFile.tp_print = 0;
17626 #endif
17627 if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_2bx_3bbi_8bbi_file_BBIFile.tp_dictoffset && __pyx_type_2bx_3bbi_8bbi_file_BBIFile.tp_getattro == PyObject_GenericGetAttr)) {
17628 __pyx_type_2bx_3bbi_8bbi_file_BBIFile.tp_getattro = __Pyx_PyObject_GenericGetAttr;
17629 }
17630 if (__Pyx_SetVtable(__pyx_type_2bx_3bbi_8bbi_file_BBIFile.tp_dict, __pyx_vtabptr_2bx_3bbi_8bbi_file_BBIFile) < 0) __PYX_ERR(0, 116, __pyx_L1_error)
17631 if (PyObject_SetAttr(__pyx_m, __pyx_n_s_BBIFile, (PyObject *)&__pyx_type_2bx_3bbi_8bbi_file_BBIFile) < 0) __PYX_ERR(0, 116, __pyx_L1_error)
17632 if (__Pyx_setup_reduce((PyObject*)&__pyx_type_2bx_3bbi_8bbi_file_BBIFile) < 0) __PYX_ERR(0, 116, __pyx_L1_error)
17633 __pyx_ptype_2bx_3bbi_8bbi_file_BBIFile = &__pyx_type_2bx_3bbi_8bbi_file_BBIFile;
17634 __pyx_vtabptr_2bx_3bbi_8bbi_file_BlockHandler = &__pyx_vtable_2bx_3bbi_8bbi_file_BlockHandler;
17635 __pyx_vtable_2bx_3bbi_8bbi_file_BlockHandler.handle_block = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_BlockHandler *, PyObject *, struct __pyx_obj_2bx_3bbi_8bbi_file_BBIFile *))__pyx_f_2bx_3bbi_8bbi_file_12BlockHandler_handle_block;
17636 if (PyType_Ready(&__pyx_type_2bx_3bbi_8bbi_file_BlockHandler) < 0) __PYX_ERR(0, 109, __pyx_L1_error)
17637 #if PY_VERSION_HEX < 0x030800B1
17638 __pyx_type_2bx_3bbi_8bbi_file_BlockHandler.tp_print = 0;
17639 #endif
17640 if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_2bx_3bbi_8bbi_file_BlockHandler.tp_dictoffset && __pyx_type_2bx_3bbi_8bbi_file_BlockHandler.tp_getattro == PyObject_GenericGetAttr)) {
17641 __pyx_type_2bx_3bbi_8bbi_file_BlockHandler.tp_getattro = __Pyx_PyObject_GenericGetAttr;
17642 }
17643 if (__Pyx_SetVtable(__pyx_type_2bx_3bbi_8bbi_file_BlockHandler.tp_dict, __pyx_vtabptr_2bx_3bbi_8bbi_file_BlockHandler) < 0) __PYX_ERR(0, 109, __pyx_L1_error)
17644 if (PyObject_SetAttr(__pyx_m, __pyx_n_s_BlockHandler, (PyObject *)&__pyx_type_2bx_3bbi_8bbi_file_BlockHandler) < 0) __PYX_ERR(0, 109, __pyx_L1_error)
17645 if (__Pyx_setup_reduce((PyObject*)&__pyx_type_2bx_3bbi_8bbi_file_BlockHandler) < 0) __PYX_ERR(0, 109, __pyx_L1_error)
17646 __pyx_ptype_2bx_3bbi_8bbi_file_BlockHandler = &__pyx_type_2bx_3bbi_8bbi_file_BlockHandler;
17647 __pyx_vtabptr_2bx_3bbi_8bbi_file_ZoomLevel = &__pyx_vtable_2bx_3bbi_8bbi_file_ZoomLevel;
17648 __pyx_vtable_2bx_3bbi_8bbi_file_ZoomLevel._get_summary_slice = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, PyObject *))__pyx_f_2bx_3bbi_8bbi_file_9ZoomLevel__get_summary_slice;
17649 __pyx_vtable_2bx_3bbi_8bbi_file_ZoomLevel._summarize = (PyObject *(*)(struct __pyx_obj_2bx_3bbi_8bbi_file_ZoomLevel *, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, __pyx_t_2bx_3bbi_5types_bits32, int))__pyx_f_2bx_3bbi_8bbi_file_9ZoomLevel__summarize;
17650 if (PyType_Ready(&__pyx_type_2bx_3bbi_8bbi_file_ZoomLevel) < 0) __PYX_ERR(0, 292, __pyx_L1_error)
17651 #if PY_VERSION_HEX < 0x030800B1
17652 __pyx_type_2bx_3bbi_8bbi_file_ZoomLevel.tp_print = 0;
17653 #endif
17654 if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_2bx_3bbi_8bbi_file_ZoomLevel.tp_dictoffset && __pyx_type_2bx_3bbi_8bbi_file_ZoomLevel.tp_getattro == PyObject_GenericGetAttr)) {
17655 __pyx_type_2bx_3bbi_8bbi_file_ZoomLevel.tp_getattro = __Pyx_PyObject_GenericGetAttr;
17656 }
17657 if (__Pyx_SetVtable(__pyx_type_2bx_3bbi_8bbi_file_ZoomLevel.tp_dict, __pyx_vtabptr_2bx_3bbi_8bbi_file_ZoomLevel) < 0) __PYX_ERR(0, 292, __pyx_L1_error)
17658 if (PyObject_SetAttr(__pyx_m, __pyx_n_s_ZoomLevel, (PyObject *)&__pyx_type_2bx_3bbi_8bbi_file_ZoomLevel) < 0) __PYX_ERR(0, 292, __pyx_L1_error)
17659 if (__Pyx_setup_reduce((PyObject*)&__pyx_type_2bx_3bbi_8bbi_file_ZoomLevel) < 0) __PYX_ERR(0, 292, __pyx_L1_error)
17660 __pyx_ptype_2bx_3bbi_8bbi_file_ZoomLevel = &__pyx_type_2bx_3bbi_8bbi_file_ZoomLevel;
17661 __Pyx_RefNannyFinishContext();
17662 return 0;
17663 __pyx_L1_error:;
17664 __Pyx_RefNannyFinishContext();
17665 return -1;
17666 }
17667
__Pyx_modinit_type_import_code(void)17668 static int __Pyx_modinit_type_import_code(void) {
17669 __Pyx_RefNannyDeclarations
17670 PyObject *__pyx_t_1 = NULL;
17671 int __pyx_lineno = 0;
17672 const char *__pyx_filename = NULL;
17673 int __pyx_clineno = 0;
17674 __Pyx_RefNannySetupContext("__Pyx_modinit_type_import_code", 0);
17675 /*--- Type import code ---*/
17676 __pyx_t_1 = PyImport_ImportModule("bx.bbi.bpt_file"); if (unlikely(!__pyx_t_1)) __PYX_ERR(4, 5, __pyx_L1_error)
17677 __Pyx_GOTREF(__pyx_t_1);
17678 __pyx_ptype_2bx_3bbi_8bpt_file_BPTFile = __Pyx_ImportType(__pyx_t_1, "bx.bbi.bpt_file", "BPTFile", sizeof(struct __pyx_obj_2bx_3bbi_8bpt_file_BPTFile), __Pyx_ImportType_CheckSize_Warn);
17679 if (!__pyx_ptype_2bx_3bbi_8bpt_file_BPTFile) __PYX_ERR(4, 5, __pyx_L1_error)
17680 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
17681 __pyx_t_1 = PyImport_ImportModule("bx.bbi.cirtree_file"); if (unlikely(!__pyx_t_1)) __PYX_ERR(5, 3, __pyx_L1_error)
17682 __Pyx_GOTREF(__pyx_t_1);
17683 __pyx_ptype_2bx_3bbi_12cirtree_file_CIRTreeFile = __Pyx_ImportType(__pyx_t_1, "bx.bbi.cirtree_file", "CIRTreeFile", sizeof(struct __pyx_obj_2bx_3bbi_12cirtree_file_CIRTreeFile), __Pyx_ImportType_CheckSize_Warn);
17684 if (!__pyx_ptype_2bx_3bbi_12cirtree_file_CIRTreeFile) __PYX_ERR(5, 3, __pyx_L1_error)
17685 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
17686 __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(6, 9, __pyx_L1_error)
17687 __Pyx_GOTREF(__pyx_t_1);
17688 __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "type",
17689 #if defined(PYPY_VERSION_NUM) && PYPY_VERSION_NUM < 0x050B0000
17690 sizeof(PyTypeObject),
17691 #else
17692 sizeof(PyHeapTypeObject),
17693 #endif
17694 __Pyx_ImportType_CheckSize_Warn);
17695 if (!__pyx_ptype_7cpython_4type_type) __PYX_ERR(6, 9, __pyx_L1_error)
17696 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
17697 __pyx_t_1 = PyImport_ImportModule("numpy"); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 200, __pyx_L1_error)
17698 __Pyx_GOTREF(__pyx_t_1);
17699 __pyx_ptype_5numpy_dtype = __Pyx_ImportType(__pyx_t_1, "numpy", "dtype", sizeof(PyArray_Descr), __Pyx_ImportType_CheckSize_Ignore);
17700 if (!__pyx_ptype_5numpy_dtype) __PYX_ERR(3, 200, __pyx_L1_error)
17701 __pyx_ptype_5numpy_flatiter = __Pyx_ImportType(__pyx_t_1, "numpy", "flatiter", sizeof(PyArrayIterObject), __Pyx_ImportType_CheckSize_Ignore);
17702 if (!__pyx_ptype_5numpy_flatiter) __PYX_ERR(3, 223, __pyx_L1_error)
17703 __pyx_ptype_5numpy_broadcast = __Pyx_ImportType(__pyx_t_1, "numpy", "broadcast", sizeof(PyArrayMultiIterObject), __Pyx_ImportType_CheckSize_Ignore);
17704 if (!__pyx_ptype_5numpy_broadcast) __PYX_ERR(3, 227, __pyx_L1_error)
17705 __pyx_ptype_5numpy_ndarray = __Pyx_ImportType(__pyx_t_1, "numpy", "ndarray", sizeof(PyArrayObject), __Pyx_ImportType_CheckSize_Ignore);
17706 if (!__pyx_ptype_5numpy_ndarray) __PYX_ERR(3, 239, __pyx_L1_error)
17707 __pyx_ptype_5numpy_generic = __Pyx_ImportType(__pyx_t_1, "numpy", "generic", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17708 if (!__pyx_ptype_5numpy_generic) __PYX_ERR(3, 771, __pyx_L1_error)
17709 __pyx_ptype_5numpy_number = __Pyx_ImportType(__pyx_t_1, "numpy", "number", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17710 if (!__pyx_ptype_5numpy_number) __PYX_ERR(3, 773, __pyx_L1_error)
17711 __pyx_ptype_5numpy_integer = __Pyx_ImportType(__pyx_t_1, "numpy", "integer", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17712 if (!__pyx_ptype_5numpy_integer) __PYX_ERR(3, 775, __pyx_L1_error)
17713 __pyx_ptype_5numpy_signedinteger = __Pyx_ImportType(__pyx_t_1, "numpy", "signedinteger", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17714 if (!__pyx_ptype_5numpy_signedinteger) __PYX_ERR(3, 777, __pyx_L1_error)
17715 __pyx_ptype_5numpy_unsignedinteger = __Pyx_ImportType(__pyx_t_1, "numpy", "unsignedinteger", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17716 if (!__pyx_ptype_5numpy_unsignedinteger) __PYX_ERR(3, 779, __pyx_L1_error)
17717 __pyx_ptype_5numpy_inexact = __Pyx_ImportType(__pyx_t_1, "numpy", "inexact", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17718 if (!__pyx_ptype_5numpy_inexact) __PYX_ERR(3, 781, __pyx_L1_error)
17719 __pyx_ptype_5numpy_floating = __Pyx_ImportType(__pyx_t_1, "numpy", "floating", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17720 if (!__pyx_ptype_5numpy_floating) __PYX_ERR(3, 783, __pyx_L1_error)
17721 __pyx_ptype_5numpy_complexfloating = __Pyx_ImportType(__pyx_t_1, "numpy", "complexfloating", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17722 if (!__pyx_ptype_5numpy_complexfloating) __PYX_ERR(3, 785, __pyx_L1_error)
17723 __pyx_ptype_5numpy_flexible = __Pyx_ImportType(__pyx_t_1, "numpy", "flexible", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17724 if (!__pyx_ptype_5numpy_flexible) __PYX_ERR(3, 787, __pyx_L1_error)
17725 __pyx_ptype_5numpy_character = __Pyx_ImportType(__pyx_t_1, "numpy", "character", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
17726 if (!__pyx_ptype_5numpy_character) __PYX_ERR(3, 789, __pyx_L1_error)
17727 __pyx_ptype_5numpy_ufunc = __Pyx_ImportType(__pyx_t_1, "numpy", "ufunc", sizeof(PyUFuncObject), __Pyx_ImportType_CheckSize_Ignore);
17728 if (!__pyx_ptype_5numpy_ufunc) __PYX_ERR(3, 827, __pyx_L1_error)
17729 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
17730 __Pyx_RefNannyFinishContext();
17731 return 0;
17732 __pyx_L1_error:;
17733 __Pyx_XDECREF(__pyx_t_1);
17734 __Pyx_RefNannyFinishContext();
17735 return -1;
17736 }
17737
__Pyx_modinit_variable_import_code(void)17738 static int __Pyx_modinit_variable_import_code(void) {
17739 __Pyx_RefNannyDeclarations
17740 __Pyx_RefNannySetupContext("__Pyx_modinit_variable_import_code", 0);
17741 /*--- Variable import code ---*/
17742 __Pyx_RefNannyFinishContext();
17743 return 0;
17744 }
17745
__Pyx_modinit_function_import_code(void)17746 static int __Pyx_modinit_function_import_code(void) {
17747 __Pyx_RefNannyDeclarations
17748 __Pyx_RefNannySetupContext("__Pyx_modinit_function_import_code", 0);
17749 /*--- Function import code ---*/
17750 __Pyx_RefNannyFinishContext();
17751 return 0;
17752 }
17753
17754
17755 #ifndef CYTHON_NO_PYINIT_EXPORT
17756 #define __Pyx_PyMODINIT_FUNC PyMODINIT_FUNC
17757 #elif PY_MAJOR_VERSION < 3
17758 #ifdef __cplusplus
17759 #define __Pyx_PyMODINIT_FUNC extern "C" void
17760 #else
17761 #define __Pyx_PyMODINIT_FUNC void
17762 #endif
17763 #else
17764 #ifdef __cplusplus
17765 #define __Pyx_PyMODINIT_FUNC extern "C" PyObject *
17766 #else
17767 #define __Pyx_PyMODINIT_FUNC PyObject *
17768 #endif
17769 #endif
17770
17771
17772 #if PY_MAJOR_VERSION < 3
17773 __Pyx_PyMODINIT_FUNC initbbi_file(void) CYTHON_SMALL_CODE; /*proto*/
initbbi_file(void)17774 __Pyx_PyMODINIT_FUNC initbbi_file(void)
17775 #else
17776 __Pyx_PyMODINIT_FUNC PyInit_bbi_file(void) CYTHON_SMALL_CODE; /*proto*/
17777 __Pyx_PyMODINIT_FUNC PyInit_bbi_file(void)
17778 #if CYTHON_PEP489_MULTI_PHASE_INIT
17779 {
17780 return PyModuleDef_Init(&__pyx_moduledef);
17781 }
17782 static CYTHON_SMALL_CODE int __Pyx_check_single_interpreter(void) {
17783 #if PY_VERSION_HEX >= 0x030700A1
17784 static PY_INT64_T main_interpreter_id = -1;
17785 PY_INT64_T current_id = PyInterpreterState_GetID(PyThreadState_Get()->interp);
17786 if (main_interpreter_id == -1) {
17787 main_interpreter_id = current_id;
17788 return (unlikely(current_id == -1)) ? -1 : 0;
17789 } else if (unlikely(main_interpreter_id != current_id))
17790 #else
17791 static PyInterpreterState *main_interpreter = NULL;
17792 PyInterpreterState *current_interpreter = PyThreadState_Get()->interp;
17793 if (!main_interpreter) {
17794 main_interpreter = current_interpreter;
17795 } else if (unlikely(main_interpreter != current_interpreter))
17796 #endif
17797 {
17798 PyErr_SetString(
17799 PyExc_ImportError,
17800 "Interpreter change detected - this module can only be loaded into one interpreter per process.");
17801 return -1;
17802 }
17803 return 0;
17804 }
17805 static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *moddict, const char* from_name, const char* to_name, int allow_none) {
17806 PyObject *value = PyObject_GetAttrString(spec, from_name);
17807 int result = 0;
17808 if (likely(value)) {
17809 if (allow_none || value != Py_None) {
17810 result = PyDict_SetItemString(moddict, to_name, value);
17811 }
17812 Py_DECREF(value);
17813 } else if (PyErr_ExceptionMatches(PyExc_AttributeError)) {
17814 PyErr_Clear();
17815 } else {
17816 result = -1;
17817 }
17818 return result;
17819 }
17820 static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, CYTHON_UNUSED PyModuleDef *def) {
17821 PyObject *module = NULL, *moddict, *modname;
17822 if (__Pyx_check_single_interpreter())
17823 return NULL;
17824 if (__pyx_m)
17825 return __Pyx_NewRef(__pyx_m);
17826 modname = PyObject_GetAttrString(spec, "name");
17827 if (unlikely(!modname)) goto bad;
17828 module = PyModule_NewObject(modname);
17829 Py_DECREF(modname);
17830 if (unlikely(!module)) goto bad;
17831 moddict = PyModule_GetDict(module);
17832 if (unlikely(!moddict)) goto bad;
17833 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "loader", "__loader__", 1) < 0)) goto bad;
17834 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "origin", "__file__", 1) < 0)) goto bad;
17835 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "parent", "__package__", 1) < 0)) goto bad;
17836 if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "submodule_search_locations", "__path__", 0) < 0)) goto bad;
17837 return module;
17838 bad:
17839 Py_XDECREF(module);
17840 return NULL;
17841 }
17842
17843
17844 static CYTHON_SMALL_CODE int __pyx_pymod_exec_bbi_file(PyObject *__pyx_pyinit_module)
17845 #endif
17846 #endif
17847 {
17848 PyObject *__pyx_t_1 = NULL;
17849 PyObject *__pyx_t_2 = NULL;
17850 int __pyx_lineno = 0;
17851 const char *__pyx_filename = NULL;
17852 int __pyx_clineno = 0;
17853 __Pyx_RefNannyDeclarations
17854 #if CYTHON_PEP489_MULTI_PHASE_INIT
17855 if (__pyx_m) {
17856 if (__pyx_m == __pyx_pyinit_module) return 0;
17857 PyErr_SetString(PyExc_RuntimeError, "Module 'bbi_file' has already been imported. Re-initialisation is not supported.");
17858 return -1;
17859 }
17860 #elif PY_MAJOR_VERSION >= 3
17861 if (__pyx_m) return __Pyx_NewRef(__pyx_m);
17862 #endif
17863 #if CYTHON_REFNANNY
17864 __Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny");
17865 if (!__Pyx_RefNanny) {
17866 PyErr_Clear();
17867 __Pyx_RefNanny = __Pyx_RefNannyImportAPI("Cython.Runtime.refnanny");
17868 if (!__Pyx_RefNanny)
17869 Py_FatalError("failed to import 'refnanny' module");
17870 }
17871 #endif
17872 __Pyx_RefNannySetupContext("__Pyx_PyMODINIT_FUNC PyInit_bbi_file(void)", 0);
17873 if (__Pyx_check_binary_version() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17874 #ifdef __Pxy_PyFrame_Initialize_Offsets
17875 __Pxy_PyFrame_Initialize_Offsets();
17876 #endif
17877 __pyx_empty_tuple = PyTuple_New(0); if (unlikely(!__pyx_empty_tuple)) __PYX_ERR(0, 1, __pyx_L1_error)
17878 __pyx_empty_bytes = PyBytes_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_bytes)) __PYX_ERR(0, 1, __pyx_L1_error)
17879 __pyx_empty_unicode = PyUnicode_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_unicode)) __PYX_ERR(0, 1, __pyx_L1_error)
17880 #ifdef __Pyx_CyFunction_USED
17881 if (__pyx_CyFunction_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17882 #endif
17883 #ifdef __Pyx_FusedFunction_USED
17884 if (__pyx_FusedFunction_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17885 #endif
17886 #ifdef __Pyx_Coroutine_USED
17887 if (__pyx_Coroutine_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17888 #endif
17889 #ifdef __Pyx_Generator_USED
17890 if (__pyx_Generator_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17891 #endif
17892 #ifdef __Pyx_AsyncGen_USED
17893 if (__pyx_AsyncGen_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17894 #endif
17895 #ifdef __Pyx_StopAsyncIteration_USED
17896 if (__pyx_StopAsyncIteration_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17897 #endif
17898 /*--- Library function declarations ---*/
17899 /*--- Threads initialization code ---*/
17900 #if defined(WITH_THREAD) && PY_VERSION_HEX < 0x030700F0 && defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS
17901 PyEval_InitThreads();
17902 #endif
17903 /*--- Module creation code ---*/
17904 #if CYTHON_PEP489_MULTI_PHASE_INIT
17905 __pyx_m = __pyx_pyinit_module;
17906 Py_INCREF(__pyx_m);
17907 #else
17908 #if PY_MAJOR_VERSION < 3
17909 __pyx_m = Py_InitModule4("bbi_file", __pyx_methods, __pyx_k_Core_implementation_for_reading, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m);
17910 #else
17911 __pyx_m = PyModule_Create(&__pyx_moduledef);
17912 #endif
17913 if (unlikely(!__pyx_m)) __PYX_ERR(0, 1, __pyx_L1_error)
17914 #endif
17915 __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(0, 1, __pyx_L1_error)
17916 Py_INCREF(__pyx_d);
17917 __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(0, 1, __pyx_L1_error)
17918 Py_INCREF(__pyx_b);
17919 __pyx_cython_runtime = PyImport_AddModule((char *) "cython_runtime"); if (unlikely(!__pyx_cython_runtime)) __PYX_ERR(0, 1, __pyx_L1_error)
17920 Py_INCREF(__pyx_cython_runtime);
17921 if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) __PYX_ERR(0, 1, __pyx_L1_error);
17922 /*--- Initialize various global constants etc. ---*/
17923 if (__Pyx_InitGlobals() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17924 #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT)
17925 if (__Pyx_init_sys_getdefaultencoding_params() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17926 #endif
17927 if (__pyx_module_is_main_bx__bbi__bbi_file) {
17928 if (PyObject_SetAttr(__pyx_m, __pyx_n_s_name, __pyx_n_s_main) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17929 }
17930 #if PY_MAJOR_VERSION >= 3
17931 {
17932 PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) __PYX_ERR(0, 1, __pyx_L1_error)
17933 if (!PyDict_GetItemString(modules, "bx.bbi.bbi_file")) {
17934 if (unlikely(PyDict_SetItemString(modules, "bx.bbi.bbi_file", __pyx_m) < 0)) __PYX_ERR(0, 1, __pyx_L1_error)
17935 }
17936 }
17937 #endif
17938 /*--- Builtin init code ---*/
17939 if (__Pyx_InitCachedBuiltins() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17940 /*--- Constants init code ---*/
17941 if (__Pyx_InitCachedConstants() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17942 /*--- Global type/function init code ---*/
17943 (void)__Pyx_modinit_global_init_code();
17944 (void)__Pyx_modinit_variable_export_code();
17945 (void)__Pyx_modinit_function_export_code();
17946 if (unlikely(__Pyx_modinit_type_init_code() < 0)) __PYX_ERR(0, 1, __pyx_L1_error)
17947 if (unlikely(__Pyx_modinit_type_import_code() < 0)) __PYX_ERR(0, 1, __pyx_L1_error)
17948 (void)__Pyx_modinit_variable_import_code();
17949 (void)__Pyx_modinit_function_import_code();
17950 /*--- Execution code ---*/
17951 #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED)
17952 if (__Pyx_patch_abc() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
17953 #endif
17954
17955 /* "bx/bbi/bbi_file.pyx":11
17956 *
17957 * from cpython.version cimport PY_MAJOR_VERSION
17958 * import sys # <<<<<<<<<<<<<<
17959 *
17960 * cimport cython
17961 */
17962 __pyx_t_1 = __Pyx_Import(__pyx_n_s_sys, 0, -1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 11, __pyx_L1_error)
17963 __Pyx_GOTREF(__pyx_t_1);
17964 if (PyDict_SetItem(__pyx_d, __pyx_n_s_sys, __pyx_t_1) < 0) __PYX_ERR(0, 11, __pyx_L1_error)
17965 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
17966
17967 /* "bx/bbi/bbi_file.pyx":15
17968 * cimport cython
17969 *
17970 * from collections import deque # <<<<<<<<<<<<<<
17971 * from bpt_file cimport BPTFile
17972 * from cirtree_file cimport CIRTreeFile
17973 */
17974 __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
17975 __Pyx_GOTREF(__pyx_t_1);
17976 __Pyx_INCREF(__pyx_n_s_deque);
17977 __Pyx_GIVEREF(__pyx_n_s_deque);
17978 PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_deque);
17979 __pyx_t_2 = __Pyx_Import(__pyx_n_s_collections, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 15, __pyx_L1_error)
17980 __Pyx_GOTREF(__pyx_t_2);
17981 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
17982 __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_deque); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
17983 __Pyx_GOTREF(__pyx_t_1);
17984 if (PyDict_SetItem(__pyx_d, __pyx_n_s_deque, __pyx_t_1) < 0) __PYX_ERR(0, 15, __pyx_L1_error)
17985 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
17986 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
17987
17988 /* "bx/bbi/bbi_file.pyx":22
17989 * from libc cimport limits
17990 *
17991 * import numpy # <<<<<<<<<<<<<<
17992 * cimport numpy
17993 *
17994 */
17995 __pyx_t_2 = __Pyx_Import(__pyx_n_s_numpy, 0, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 22, __pyx_L1_error)
17996 __Pyx_GOTREF(__pyx_t_2);
17997 if (PyDict_SetItem(__pyx_d, __pyx_n_s_numpy, __pyx_t_2) < 0) __PYX_ERR(0, 22, __pyx_L1_error)
17998 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
17999
18000 /* "bx/bbi/bbi_file.pyx":25
18001 * cimport numpy
18002 *
18003 * from bx.misc.binary_file import BinaryFileReader # <<<<<<<<<<<<<<
18004 * from io import BytesIO
18005 * import zlib, math
18006 */
18007 __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 25, __pyx_L1_error)
18008 __Pyx_GOTREF(__pyx_t_2);
18009 __Pyx_INCREF(__pyx_n_s_BinaryFileReader);
18010 __Pyx_GIVEREF(__pyx_n_s_BinaryFileReader);
18011 PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_BinaryFileReader);
18012 __pyx_t_1 = __Pyx_Import(__pyx_n_s_bx_misc_binary_file, __pyx_t_2, -1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 25, __pyx_L1_error)
18013 __Pyx_GOTREF(__pyx_t_1);
18014 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18015 __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_1, __pyx_n_s_BinaryFileReader); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 25, __pyx_L1_error)
18016 __Pyx_GOTREF(__pyx_t_2);
18017 if (PyDict_SetItem(__pyx_d, __pyx_n_s_BinaryFileReader, __pyx_t_2) < 0) __PYX_ERR(0, 25, __pyx_L1_error)
18018 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18019 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
18020
18021 /* "bx/bbi/bbi_file.pyx":26
18022 *
18023 * from bx.misc.binary_file import BinaryFileReader
18024 * from io import BytesIO # <<<<<<<<<<<<<<
18025 * import zlib, math
18026 *
18027 */
18028 __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 26, __pyx_L1_error)
18029 __Pyx_GOTREF(__pyx_t_1);
18030 __Pyx_INCREF(__pyx_n_s_BytesIO);
18031 __Pyx_GIVEREF(__pyx_n_s_BytesIO);
18032 PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_BytesIO);
18033 __pyx_t_2 = __Pyx_Import(__pyx_n_s_io, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 26, __pyx_L1_error)
18034 __Pyx_GOTREF(__pyx_t_2);
18035 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
18036 __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_BytesIO); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 26, __pyx_L1_error)
18037 __Pyx_GOTREF(__pyx_t_1);
18038 if (PyDict_SetItem(__pyx_d, __pyx_n_s_BytesIO, __pyx_t_1) < 0) __PYX_ERR(0, 26, __pyx_L1_error)
18039 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
18040 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18041
18042 /* "bx/bbi/bbi_file.pyx":27
18043 * from bx.misc.binary_file import BinaryFileReader
18044 * from io import BytesIO
18045 * import zlib, math # <<<<<<<<<<<<<<
18046 *
18047 * cdef extern from "Python.h":
18048 */
18049 __pyx_t_2 = __Pyx_Import(__pyx_n_s_zlib, 0, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 27, __pyx_L1_error)
18050 __Pyx_GOTREF(__pyx_t_2);
18051 if (PyDict_SetItem(__pyx_d, __pyx_n_s_zlib, __pyx_t_2) < 0) __PYX_ERR(0, 27, __pyx_L1_error)
18052 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18053 __pyx_t_2 = __Pyx_Import(__pyx_n_s_math, 0, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 27, __pyx_L1_error)
18054 __Pyx_GOTREF(__pyx_t_2);
18055 if (PyDict_SetItem(__pyx_d, __pyx_n_s_math, __pyx_t_2) < 0) __PYX_ERR(0, 27, __pyx_L1_error)
18056 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18057
18058 /* "bx/bbi/bbi_file.pyx":34
18059 * # Signatures for bbi related file types
18060 *
18061 * cdef public int big_wig_sig = 0x888FFC26 # <<<<<<<<<<<<<<
18062 * cdef public int big_bed_sig = 0x8789F2EB
18063 *
18064 */
18065 big_wig_sig = 0x888FFC26;
18066
18067 /* "bx/bbi/bbi_file.pyx":35
18068 *
18069 * cdef public int big_wig_sig = 0x888FFC26
18070 * cdef public int big_bed_sig = 0x8789F2EB # <<<<<<<<<<<<<<
18071 *
18072 * # Some record sizes for parsing
18073 */
18074 big_bed_sig = 0x8789F2EB;
18075
18076 /* "(tree fragment)":1
18077 * def __pyx_unpickle_SummaryBlock(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
18078 * cdef object __pyx_PickleError
18079 * cdef object __pyx_result
18080 */
18081 __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_2bx_3bbi_8bbi_file_1__pyx_unpickle_SummaryBlock, NULL, __pyx_n_s_bx_bbi_bbi_file); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 1, __pyx_L1_error)
18082 __Pyx_GOTREF(__pyx_t_2);
18083 if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_SummaryBlock, __pyx_t_2) < 0) __PYX_ERR(2, 1, __pyx_L1_error)
18084 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18085
18086 /* "(tree fragment)":11
18087 * __pyx_unpickle_SummaryBlock__set_state(<SummaryBlock> __pyx_result, __pyx_state)
18088 * return __pyx_result
18089 * cdef __pyx_unpickle_SummaryBlock__set_state(SummaryBlock __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
18090 * __pyx_result.chrom_id = __pyx_state[0]; __pyx_result.end = __pyx_state[1]; __pyx_result.max_val = __pyx_state[2]; __pyx_result.min_val = __pyx_state[3]; __pyx_result.start = __pyx_state[4]; __pyx_result.sum_data = __pyx_state[5]; __pyx_result.sum_squares = __pyx_state[6]; __pyx_result.valid_count = __pyx_state[7]
18091 * if len(__pyx_state) > 8 and hasattr(__pyx_result, '__dict__'):
18092 */
18093 __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_2bx_3bbi_8bbi_file_3__pyx_unpickle_SummarizedData, NULL, __pyx_n_s_bx_bbi_bbi_file); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 1, __pyx_L1_error)
18094 __Pyx_GOTREF(__pyx_t_2);
18095 if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_SummarizedData, __pyx_t_2) < 0) __PYX_ERR(2, 1, __pyx_L1_error)
18096 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18097
18098 /* "(tree fragment)":1
18099 * def __pyx_unpickle_BlockHandler(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
18100 * cdef object __pyx_PickleError
18101 * cdef object __pyx_result
18102 */
18103 __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_2bx_3bbi_8bbi_file_5__pyx_unpickle_BlockHandler, NULL, __pyx_n_s_bx_bbi_bbi_file); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 1, __pyx_L1_error)
18104 __Pyx_GOTREF(__pyx_t_2);
18105 if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_BlockHandler, __pyx_t_2) < 0) __PYX_ERR(2, 1, __pyx_L1_error)
18106 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18107
18108 /* "(tree fragment)":11
18109 * __pyx_unpickle_BlockHandler__set_state(<BlockHandler> __pyx_result, __pyx_state)
18110 * return __pyx_result
18111 * cdef __pyx_unpickle_BlockHandler__set_state(BlockHandler __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<<
18112 * if len(__pyx_state) > 0 and hasattr(__pyx_result, '__dict__'):
18113 * __pyx_result.__dict__.update(__pyx_state[0])
18114 */
18115 __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_2bx_3bbi_8bbi_file_7__pyx_unpickle_BBIFile, NULL, __pyx_n_s_bx_bbi_bbi_file); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 1, __pyx_L1_error)
18116 __Pyx_GOTREF(__pyx_t_2);
18117 if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_BBIFile, __pyx_t_2) < 0) __PYX_ERR(2, 1, __pyx_L1_error)
18118 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18119
18120 /* "(tree fragment)":1
18121 * def __pyx_unpickle_ZoomLevel(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<<
18122 * cdef object __pyx_PickleError
18123 * cdef object __pyx_result
18124 */
18125 __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_2bx_3bbi_8bbi_file_9__pyx_unpickle_ZoomLevel, NULL, __pyx_n_s_bx_bbi_bbi_file); if (unlikely(!__pyx_t_2)) __PYX_ERR(2, 1, __pyx_L1_error)
18126 __Pyx_GOTREF(__pyx_t_2);
18127 if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_ZoomLevel, __pyx_t_2) < 0) __PYX_ERR(2, 1, __pyx_L1_error)
18128 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18129
18130 /* "bx/bbi/bbi_file.pyx":1
18131 * # cython: profile=False # <<<<<<<<<<<<<<
18132 *
18133 * """
18134 */
18135 __pyx_t_2 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1, __pyx_L1_error)
18136 __Pyx_GOTREF(__pyx_t_2);
18137 if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_2) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
18138 __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
18139
18140 /* "../../../../../tmp/build-env-5vvax6c8/lib/python3.10/site-packages/numpy/__init__.pxd":1014
18141 *
18142 *
18143 * cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil: # <<<<<<<<<<<<<<
18144 * """
18145 * returns the unit part of the dtype for a numpy datetime64 object.
18146 */
18147
18148 /*--- Wrapped vars code ---*/
18149
18150 goto __pyx_L0;
18151 __pyx_L1_error:;
18152 __Pyx_XDECREF(__pyx_t_1);
18153 __Pyx_XDECREF(__pyx_t_2);
18154 if (__pyx_m) {
18155 if (__pyx_d) {
18156 __Pyx_AddTraceback("init bx.bbi.bbi_file", __pyx_clineno, __pyx_lineno, __pyx_filename);
18157 }
18158 Py_CLEAR(__pyx_m);
18159 } else if (!PyErr_Occurred()) {
18160 PyErr_SetString(PyExc_ImportError, "init bx.bbi.bbi_file");
18161 }
18162 __pyx_L0:;
18163 __Pyx_RefNannyFinishContext();
18164 #if CYTHON_PEP489_MULTI_PHASE_INIT
18165 return (__pyx_m != NULL) ? 0 : -1;
18166 #elif PY_MAJOR_VERSION >= 3
18167 return __pyx_m;
18168 #else
18169 return;
18170 #endif
18171 }
18172
18173 /* --- Runtime support code --- */
18174 /* Refnanny */
18175 #if CYTHON_REFNANNY
__Pyx_RefNannyImportAPI(const char * modname)18176 static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) {
18177 PyObject *m = NULL, *p = NULL;
18178 void *r = NULL;
18179 m = PyImport_ImportModule(modname);
18180 if (!m) goto end;
18181 p = PyObject_GetAttrString(m, "RefNannyAPI");
18182 if (!p) goto end;
18183 r = PyLong_AsVoidPtr(p);
18184 end:
18185 Py_XDECREF(p);
18186 Py_XDECREF(m);
18187 return (__Pyx_RefNannyAPIStruct *)r;
18188 }
18189 #endif
18190
18191 /* PyObjectGetAttrStr */
18192 #if CYTHON_USE_TYPE_SLOTS
__Pyx_PyObject_GetAttrStr(PyObject * obj,PyObject * attr_name)18193 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
18194 PyTypeObject* tp = Py_TYPE(obj);
18195 if (likely(tp->tp_getattro))
18196 return tp->tp_getattro(obj, attr_name);
18197 #if PY_MAJOR_VERSION < 3
18198 if (likely(tp->tp_getattr))
18199 return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
18200 #endif
18201 return PyObject_GetAttr(obj, attr_name);
18202 }
18203 #endif
18204
18205 /* GetBuiltinName */
__Pyx_GetBuiltinName(PyObject * name)18206 static PyObject *__Pyx_GetBuiltinName(PyObject *name) {
18207 PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name);
18208 if (unlikely(!result)) {
18209 PyErr_Format(PyExc_NameError,
18210 #if PY_MAJOR_VERSION >= 3
18211 "name '%U' is not defined", name);
18212 #else
18213 "name '%.200s' is not defined", PyString_AS_STRING(name));
18214 #endif
18215 }
18216 return result;
18217 }
18218
18219 /* PyErrExceptionMatches */
18220 #if CYTHON_FAST_THREAD_STATE
__Pyx_PyErr_ExceptionMatchesTuple(PyObject * exc_type,PyObject * tuple)18221 static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
18222 Py_ssize_t i, n;
18223 n = PyTuple_GET_SIZE(tuple);
18224 #if PY_MAJOR_VERSION >= 3
18225 for (i=0; i<n; i++) {
18226 if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
18227 }
18228 #endif
18229 for (i=0; i<n; i++) {
18230 if (__Pyx_PyErr_GivenExceptionMatches(exc_type, PyTuple_GET_ITEM(tuple, i))) return 1;
18231 }
18232 return 0;
18233 }
__Pyx_PyErr_ExceptionMatchesInState(PyThreadState * tstate,PyObject * err)18234 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
18235 PyObject *exc_type = tstate->curexc_type;
18236 if (exc_type == err) return 1;
18237 if (unlikely(!exc_type)) return 0;
18238 if (unlikely(PyTuple_Check(err)))
18239 return __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err);
18240 return __Pyx_PyErr_GivenExceptionMatches(exc_type, err);
18241 }
18242 #endif
18243
18244 /* PyErrFetchRestore */
18245 #if CYTHON_FAST_THREAD_STATE
__Pyx_ErrRestoreInState(PyThreadState * tstate,PyObject * type,PyObject * value,PyObject * tb)18246 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
18247 PyObject *tmp_type, *tmp_value, *tmp_tb;
18248 tmp_type = tstate->curexc_type;
18249 tmp_value = tstate->curexc_value;
18250 tmp_tb = tstate->curexc_traceback;
18251 tstate->curexc_type = type;
18252 tstate->curexc_value = value;
18253 tstate->curexc_traceback = tb;
18254 Py_XDECREF(tmp_type);
18255 Py_XDECREF(tmp_value);
18256 Py_XDECREF(tmp_tb);
18257 }
__Pyx_ErrFetchInState(PyThreadState * tstate,PyObject ** type,PyObject ** value,PyObject ** tb)18258 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
18259 *type = tstate->curexc_type;
18260 *value = tstate->curexc_value;
18261 *tb = tstate->curexc_traceback;
18262 tstate->curexc_type = 0;
18263 tstate->curexc_value = 0;
18264 tstate->curexc_traceback = 0;
18265 }
18266 #endif
18267
18268 /* GetAttr */
__Pyx_GetAttr(PyObject * o,PyObject * n)18269 static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) {
18270 #if CYTHON_USE_TYPE_SLOTS
18271 #if PY_MAJOR_VERSION >= 3
18272 if (likely(PyUnicode_Check(n)))
18273 #else
18274 if (likely(PyString_Check(n)))
18275 #endif
18276 return __Pyx_PyObject_GetAttrStr(o, n);
18277 #endif
18278 return PyObject_GetAttr(o, n);
18279 }
18280
18281 /* GetAttr3 */
__Pyx_GetAttr3Default(PyObject * d)18282 static PyObject *__Pyx_GetAttr3Default(PyObject *d) {
18283 __Pyx_PyThreadState_declare
18284 __Pyx_PyThreadState_assign
18285 if (unlikely(!__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
18286 return NULL;
18287 __Pyx_PyErr_Clear();
18288 Py_INCREF(d);
18289 return d;
18290 }
__Pyx_GetAttr3(PyObject * o,PyObject * n,PyObject * d)18291 static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *o, PyObject *n, PyObject *d) {
18292 PyObject *r = __Pyx_GetAttr(o, n);
18293 return (likely(r)) ? r : __Pyx_GetAttr3Default(d);
18294 }
18295
18296 /* PyDictVersioning */
18297 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
__Pyx_get_tp_dict_version(PyObject * obj)18298 static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) {
18299 PyObject *dict = Py_TYPE(obj)->tp_dict;
18300 return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0;
18301 }
__Pyx_get_object_dict_version(PyObject * obj)18302 static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) {
18303 PyObject **dictptr = NULL;
18304 Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset;
18305 if (offset) {
18306 #if CYTHON_COMPILING_IN_CPYTHON
18307 dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj);
18308 #else
18309 dictptr = _PyObject_GetDictPtr(obj);
18310 #endif
18311 }
18312 return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0;
18313 }
__Pyx_object_dict_version_matches(PyObject * obj,PY_UINT64_T tp_dict_version,PY_UINT64_T obj_dict_version)18314 static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) {
18315 PyObject *dict = Py_TYPE(obj)->tp_dict;
18316 if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict)))
18317 return 0;
18318 return obj_dict_version == __Pyx_get_object_dict_version(obj);
18319 }
18320 #endif
18321
18322 /* GetModuleGlobalName */
18323 #if CYTHON_USE_DICT_VERSIONS
__Pyx__GetModuleGlobalName(PyObject * name,PY_UINT64_T * dict_version,PyObject ** dict_cached_value)18324 static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value)
18325 #else
18326 static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name)
18327 #endif
18328 {
18329 PyObject *result;
18330 #if !CYTHON_AVOID_BORROWED_REFS
18331 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
18332 result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash);
18333 __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
18334 if (likely(result)) {
18335 return __Pyx_NewRef(result);
18336 } else if (unlikely(PyErr_Occurred())) {
18337 return NULL;
18338 }
18339 #else
18340 result = PyDict_GetItem(__pyx_d, name);
18341 __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
18342 if (likely(result)) {
18343 return __Pyx_NewRef(result);
18344 }
18345 #endif
18346 #else
18347 result = PyObject_GetItem(__pyx_d, name);
18348 __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
18349 if (likely(result)) {
18350 return __Pyx_NewRef(result);
18351 }
18352 PyErr_Clear();
18353 #endif
18354 return __Pyx_GetBuiltinName(name);
18355 }
18356
18357 /* RaiseArgTupleInvalid */
__Pyx_RaiseArgtupleInvalid(const char * func_name,int exact,Py_ssize_t num_min,Py_ssize_t num_max,Py_ssize_t num_found)18358 static void __Pyx_RaiseArgtupleInvalid(
18359 const char* func_name,
18360 int exact,
18361 Py_ssize_t num_min,
18362 Py_ssize_t num_max,
18363 Py_ssize_t num_found)
18364 {
18365 Py_ssize_t num_expected;
18366 const char *more_or_less;
18367 if (num_found < num_min) {
18368 num_expected = num_min;
18369 more_or_less = "at least";
18370 } else {
18371 num_expected = num_max;
18372 more_or_less = "at most";
18373 }
18374 if (exact) {
18375 more_or_less = "exactly";
18376 }
18377 PyErr_Format(PyExc_TypeError,
18378 "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)",
18379 func_name, more_or_less, num_expected,
18380 (num_expected == 1) ? "" : "s", num_found);
18381 }
18382
18383 /* RaiseDoubleKeywords */
__Pyx_RaiseDoubleKeywordsError(const char * func_name,PyObject * kw_name)18384 static void __Pyx_RaiseDoubleKeywordsError(
18385 const char* func_name,
18386 PyObject* kw_name)
18387 {
18388 PyErr_Format(PyExc_TypeError,
18389 #if PY_MAJOR_VERSION >= 3
18390 "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
18391 #else
18392 "%s() got multiple values for keyword argument '%s'", func_name,
18393 PyString_AsString(kw_name));
18394 #endif
18395 }
18396
18397 /* ParseKeywords */
__Pyx_ParseOptionalKeywords(PyObject * kwds,PyObject ** argnames[],PyObject * kwds2,PyObject * values[],Py_ssize_t num_pos_args,const char * function_name)18398 static int __Pyx_ParseOptionalKeywords(
18399 PyObject *kwds,
18400 PyObject **argnames[],
18401 PyObject *kwds2,
18402 PyObject *values[],
18403 Py_ssize_t num_pos_args,
18404 const char* function_name)
18405 {
18406 PyObject *key = 0, *value = 0;
18407 Py_ssize_t pos = 0;
18408 PyObject*** name;
18409 PyObject*** first_kw_arg = argnames + num_pos_args;
18410 while (PyDict_Next(kwds, &pos, &key, &value)) {
18411 name = first_kw_arg;
18412 while (*name && (**name != key)) name++;
18413 if (*name) {
18414 values[name-argnames] = value;
18415 continue;
18416 }
18417 name = first_kw_arg;
18418 #if PY_MAJOR_VERSION < 3
18419 if (likely(PyString_Check(key))) {
18420 while (*name) {
18421 if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
18422 && _PyString_Eq(**name, key)) {
18423 values[name-argnames] = value;
18424 break;
18425 }
18426 name++;
18427 }
18428 if (*name) continue;
18429 else {
18430 PyObject*** argname = argnames;
18431 while (argname != first_kw_arg) {
18432 if ((**argname == key) || (
18433 (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
18434 && _PyString_Eq(**argname, key))) {
18435 goto arg_passed_twice;
18436 }
18437 argname++;
18438 }
18439 }
18440 } else
18441 #endif
18442 if (likely(PyUnicode_Check(key))) {
18443 while (*name) {
18444 int cmp = (**name == key) ? 0 :
18445 #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
18446 (__Pyx_PyUnicode_GET_LENGTH(**name) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 :
18447 #endif
18448 PyUnicode_Compare(**name, key);
18449 if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
18450 if (cmp == 0) {
18451 values[name-argnames] = value;
18452 break;
18453 }
18454 name++;
18455 }
18456 if (*name) continue;
18457 else {
18458 PyObject*** argname = argnames;
18459 while (argname != first_kw_arg) {
18460 int cmp = (**argname == key) ? 0 :
18461 #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
18462 (__Pyx_PyUnicode_GET_LENGTH(**argname) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 :
18463 #endif
18464 PyUnicode_Compare(**argname, key);
18465 if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
18466 if (cmp == 0) goto arg_passed_twice;
18467 argname++;
18468 }
18469 }
18470 } else
18471 goto invalid_keyword_type;
18472 if (kwds2) {
18473 if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
18474 } else {
18475 goto invalid_keyword;
18476 }
18477 }
18478 return 0;
18479 arg_passed_twice:
18480 __Pyx_RaiseDoubleKeywordsError(function_name, key);
18481 goto bad;
18482 invalid_keyword_type:
18483 PyErr_Format(PyExc_TypeError,
18484 "%.200s() keywords must be strings", function_name);
18485 goto bad;
18486 invalid_keyword:
18487 PyErr_Format(PyExc_TypeError,
18488 #if PY_MAJOR_VERSION < 3
18489 "%.200s() got an unexpected keyword argument '%.200s'",
18490 function_name, PyString_AsString(key));
18491 #else
18492 "%s() got an unexpected keyword argument '%U'",
18493 function_name, key);
18494 #endif
18495 bad:
18496 return -1;
18497 }
18498
18499 /* PyObjectCall */
18500 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx_PyObject_Call(PyObject * func,PyObject * arg,PyObject * kw)18501 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
18502 PyObject *result;
18503 ternaryfunc call = Py_TYPE(func)->tp_call;
18504 if (unlikely(!call))
18505 return PyObject_Call(func, arg, kw);
18506 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
18507 return NULL;
18508 result = (*call)(func, arg, kw);
18509 Py_LeaveRecursiveCall();
18510 if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
18511 PyErr_SetString(
18512 PyExc_SystemError,
18513 "NULL result without error in PyObject_Call");
18514 }
18515 return result;
18516 }
18517 #endif
18518
18519 /* ExtTypeTest */
__Pyx_TypeTest(PyObject * obj,PyTypeObject * type)18520 static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
18521 if (unlikely(!type)) {
18522 PyErr_SetString(PyExc_SystemError, "Missing type object");
18523 return 0;
18524 }
18525 if (likely(__Pyx_TypeCheck(obj, type)))
18526 return 1;
18527 PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
18528 Py_TYPE(obj)->tp_name, type->tp_name);
18529 return 0;
18530 }
18531
18532 /* IsLittleEndian */
__Pyx_Is_Little_Endian(void)18533 static CYTHON_INLINE int __Pyx_Is_Little_Endian(void)
18534 {
18535 union {
18536 uint32_t u32;
18537 uint8_t u8[4];
18538 } S;
18539 S.u32 = 0x01020304;
18540 return S.u8[0] == 4;
18541 }
18542
18543 /* BufferFormatCheck */
__Pyx_BufFmt_Init(__Pyx_BufFmt_Context * ctx,__Pyx_BufFmt_StackElem * stack,__Pyx_TypeInfo * type)18544 static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
18545 __Pyx_BufFmt_StackElem* stack,
18546 __Pyx_TypeInfo* type) {
18547 stack[0].field = &ctx->root;
18548 stack[0].parent_offset = 0;
18549 ctx->root.type = type;
18550 ctx->root.name = "buffer dtype";
18551 ctx->root.offset = 0;
18552 ctx->head = stack;
18553 ctx->head->field = &ctx->root;
18554 ctx->fmt_offset = 0;
18555 ctx->head->parent_offset = 0;
18556 ctx->new_packmode = '@';
18557 ctx->enc_packmode = '@';
18558 ctx->new_count = 1;
18559 ctx->enc_count = 0;
18560 ctx->enc_type = 0;
18561 ctx->is_complex = 0;
18562 ctx->is_valid_array = 0;
18563 ctx->struct_alignment = 0;
18564 while (type->typegroup == 'S') {
18565 ++ctx->head;
18566 ctx->head->field = type->fields;
18567 ctx->head->parent_offset = 0;
18568 type = type->fields->type;
18569 }
18570 }
__Pyx_BufFmt_ParseNumber(const char ** ts)18571 static int __Pyx_BufFmt_ParseNumber(const char** ts) {
18572 int count;
18573 const char* t = *ts;
18574 if (*t < '0' || *t > '9') {
18575 return -1;
18576 } else {
18577 count = *t++ - '0';
18578 while (*t >= '0' && *t <= '9') {
18579 count *= 10;
18580 count += *t++ - '0';
18581 }
18582 }
18583 *ts = t;
18584 return count;
18585 }
__Pyx_BufFmt_ExpectNumber(const char ** ts)18586 static int __Pyx_BufFmt_ExpectNumber(const char **ts) {
18587 int number = __Pyx_BufFmt_ParseNumber(ts);
18588 if (number == -1)
18589 PyErr_Format(PyExc_ValueError,\
18590 "Does not understand character buffer dtype format string ('%c')", **ts);
18591 return number;
18592 }
__Pyx_BufFmt_RaiseUnexpectedChar(char ch)18593 static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) {
18594 PyErr_Format(PyExc_ValueError,
18595 "Unexpected format string character: '%c'", ch);
18596 }
__Pyx_BufFmt_DescribeTypeChar(char ch,int is_complex)18597 static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) {
18598 switch (ch) {
18599 case '?': return "'bool'";
18600 case 'c': return "'char'";
18601 case 'b': return "'signed char'";
18602 case 'B': return "'unsigned char'";
18603 case 'h': return "'short'";
18604 case 'H': return "'unsigned short'";
18605 case 'i': return "'int'";
18606 case 'I': return "'unsigned int'";
18607 case 'l': return "'long'";
18608 case 'L': return "'unsigned long'";
18609 case 'q': return "'long long'";
18610 case 'Q': return "'unsigned long long'";
18611 case 'f': return (is_complex ? "'complex float'" : "'float'");
18612 case 'd': return (is_complex ? "'complex double'" : "'double'");
18613 case 'g': return (is_complex ? "'complex long double'" : "'long double'");
18614 case 'T': return "a struct";
18615 case 'O': return "Python object";
18616 case 'P': return "a pointer";
18617 case 's': case 'p': return "a string";
18618 case 0: return "end";
18619 default: return "unparseable format string";
18620 }
18621 }
__Pyx_BufFmt_TypeCharToStandardSize(char ch,int is_complex)18622 static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) {
18623 switch (ch) {
18624 case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
18625 case 'h': case 'H': return 2;
18626 case 'i': case 'I': case 'l': case 'L': return 4;
18627 case 'q': case 'Q': return 8;
18628 case 'f': return (is_complex ? 8 : 4);
18629 case 'd': return (is_complex ? 16 : 8);
18630 case 'g': {
18631 PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g')..");
18632 return 0;
18633 }
18634 case 'O': case 'P': return sizeof(void*);
18635 default:
18636 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
18637 return 0;
18638 }
18639 }
__Pyx_BufFmt_TypeCharToNativeSize(char ch,int is_complex)18640 static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) {
18641 switch (ch) {
18642 case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
18643 case 'h': case 'H': return sizeof(short);
18644 case 'i': case 'I': return sizeof(int);
18645 case 'l': case 'L': return sizeof(long);
18646 #ifdef HAVE_LONG_LONG
18647 case 'q': case 'Q': return sizeof(PY_LONG_LONG);
18648 #endif
18649 case 'f': return sizeof(float) * (is_complex ? 2 : 1);
18650 case 'd': return sizeof(double) * (is_complex ? 2 : 1);
18651 case 'g': return sizeof(long double) * (is_complex ? 2 : 1);
18652 case 'O': case 'P': return sizeof(void*);
18653 default: {
18654 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
18655 return 0;
18656 }
18657 }
18658 }
18659 typedef struct { char c; short x; } __Pyx_st_short;
18660 typedef struct { char c; int x; } __Pyx_st_int;
18661 typedef struct { char c; long x; } __Pyx_st_long;
18662 typedef struct { char c; float x; } __Pyx_st_float;
18663 typedef struct { char c; double x; } __Pyx_st_double;
18664 typedef struct { char c; long double x; } __Pyx_st_longdouble;
18665 typedef struct { char c; void *x; } __Pyx_st_void_p;
18666 #ifdef HAVE_LONG_LONG
18667 typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong;
18668 #endif
__Pyx_BufFmt_TypeCharToAlignment(char ch,CYTHON_UNUSED int is_complex)18669 static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) {
18670 switch (ch) {
18671 case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
18672 case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short);
18673 case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int);
18674 case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long);
18675 #ifdef HAVE_LONG_LONG
18676 case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG);
18677 #endif
18678 case 'f': return sizeof(__Pyx_st_float) - sizeof(float);
18679 case 'd': return sizeof(__Pyx_st_double) - sizeof(double);
18680 case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double);
18681 case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*);
18682 default:
18683 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
18684 return 0;
18685 }
18686 }
18687 /* These are for computing the padding at the end of the struct to align
18688 on the first member of the struct. This will probably the same as above,
18689 but we don't have any guarantees.
18690 */
18691 typedef struct { short x; char c; } __Pyx_pad_short;
18692 typedef struct { int x; char c; } __Pyx_pad_int;
18693 typedef struct { long x; char c; } __Pyx_pad_long;
18694 typedef struct { float x; char c; } __Pyx_pad_float;
18695 typedef struct { double x; char c; } __Pyx_pad_double;
18696 typedef struct { long double x; char c; } __Pyx_pad_longdouble;
18697 typedef struct { void *x; char c; } __Pyx_pad_void_p;
18698 #ifdef HAVE_LONG_LONG
18699 typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong;
18700 #endif
__Pyx_BufFmt_TypeCharToPadding(char ch,CYTHON_UNUSED int is_complex)18701 static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) {
18702 switch (ch) {
18703 case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
18704 case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short);
18705 case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int);
18706 case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long);
18707 #ifdef HAVE_LONG_LONG
18708 case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG);
18709 #endif
18710 case 'f': return sizeof(__Pyx_pad_float) - sizeof(float);
18711 case 'd': return sizeof(__Pyx_pad_double) - sizeof(double);
18712 case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double);
18713 case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*);
18714 default:
18715 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
18716 return 0;
18717 }
18718 }
__Pyx_BufFmt_TypeCharToGroup(char ch,int is_complex)18719 static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) {
18720 switch (ch) {
18721 case 'c':
18722 return 'H';
18723 case 'b': case 'h': case 'i':
18724 case 'l': case 'q': case 's': case 'p':
18725 return 'I';
18726 case '?': case 'B': case 'H': case 'I': case 'L': case 'Q':
18727 return 'U';
18728 case 'f': case 'd': case 'g':
18729 return (is_complex ? 'C' : 'R');
18730 case 'O':
18731 return 'O';
18732 case 'P':
18733 return 'P';
18734 default: {
18735 __Pyx_BufFmt_RaiseUnexpectedChar(ch);
18736 return 0;
18737 }
18738 }
18739 }
__Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context * ctx)18740 static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) {
18741 if (ctx->head == NULL || ctx->head->field == &ctx->root) {
18742 const char* expected;
18743 const char* quote;
18744 if (ctx->head == NULL) {
18745 expected = "end";
18746 quote = "";
18747 } else {
18748 expected = ctx->head->field->type->name;
18749 quote = "'";
18750 }
18751 PyErr_Format(PyExc_ValueError,
18752 "Buffer dtype mismatch, expected %s%s%s but got %s",
18753 quote, expected, quote,
18754 __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex));
18755 } else {
18756 __Pyx_StructField* field = ctx->head->field;
18757 __Pyx_StructField* parent = (ctx->head - 1)->field;
18758 PyErr_Format(PyExc_ValueError,
18759 "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'",
18760 field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex),
18761 parent->type->name, field->name);
18762 }
18763 }
__Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context * ctx)18764 static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) {
18765 char group;
18766 size_t size, offset, arraysize = 1;
18767 if (ctx->enc_type == 0) return 0;
18768 if (ctx->head->field->type->arraysize[0]) {
18769 int i, ndim = 0;
18770 if (ctx->enc_type == 's' || ctx->enc_type == 'p') {
18771 ctx->is_valid_array = ctx->head->field->type->ndim == 1;
18772 ndim = 1;
18773 if (ctx->enc_count != ctx->head->field->type->arraysize[0]) {
18774 PyErr_Format(PyExc_ValueError,
18775 "Expected a dimension of size %zu, got %zu",
18776 ctx->head->field->type->arraysize[0], ctx->enc_count);
18777 return -1;
18778 }
18779 }
18780 if (!ctx->is_valid_array) {
18781 PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d",
18782 ctx->head->field->type->ndim, ndim);
18783 return -1;
18784 }
18785 for (i = 0; i < ctx->head->field->type->ndim; i++) {
18786 arraysize *= ctx->head->field->type->arraysize[i];
18787 }
18788 ctx->is_valid_array = 0;
18789 ctx->enc_count = 1;
18790 }
18791 group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex);
18792 do {
18793 __Pyx_StructField* field = ctx->head->field;
18794 __Pyx_TypeInfo* type = field->type;
18795 if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') {
18796 size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex);
18797 } else {
18798 size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex);
18799 }
18800 if (ctx->enc_packmode == '@') {
18801 size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex);
18802 size_t align_mod_offset;
18803 if (align_at == 0) return -1;
18804 align_mod_offset = ctx->fmt_offset % align_at;
18805 if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset;
18806 if (ctx->struct_alignment == 0)
18807 ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type,
18808 ctx->is_complex);
18809 }
18810 if (type->size != size || type->typegroup != group) {
18811 if (type->typegroup == 'C' && type->fields != NULL) {
18812 size_t parent_offset = ctx->head->parent_offset + field->offset;
18813 ++ctx->head;
18814 ctx->head->field = type->fields;
18815 ctx->head->parent_offset = parent_offset;
18816 continue;
18817 }
18818 if ((type->typegroup == 'H' || group == 'H') && type->size == size) {
18819 } else {
18820 __Pyx_BufFmt_RaiseExpected(ctx);
18821 return -1;
18822 }
18823 }
18824 offset = ctx->head->parent_offset + field->offset;
18825 if (ctx->fmt_offset != offset) {
18826 PyErr_Format(PyExc_ValueError,
18827 "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected",
18828 (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset);
18829 return -1;
18830 }
18831 ctx->fmt_offset += size;
18832 if (arraysize)
18833 ctx->fmt_offset += (arraysize - 1) * size;
18834 --ctx->enc_count;
18835 while (1) {
18836 if (field == &ctx->root) {
18837 ctx->head = NULL;
18838 if (ctx->enc_count != 0) {
18839 __Pyx_BufFmt_RaiseExpected(ctx);
18840 return -1;
18841 }
18842 break;
18843 }
18844 ctx->head->field = ++field;
18845 if (field->type == NULL) {
18846 --ctx->head;
18847 field = ctx->head->field;
18848 continue;
18849 } else if (field->type->typegroup == 'S') {
18850 size_t parent_offset = ctx->head->parent_offset + field->offset;
18851 if (field->type->fields->type == NULL) continue;
18852 field = field->type->fields;
18853 ++ctx->head;
18854 ctx->head->field = field;
18855 ctx->head->parent_offset = parent_offset;
18856 break;
18857 } else {
18858 break;
18859 }
18860 }
18861 } while (ctx->enc_count);
18862 ctx->enc_type = 0;
18863 ctx->is_complex = 0;
18864 return 0;
18865 }
18866 static PyObject *
__pyx_buffmt_parse_array(__Pyx_BufFmt_Context * ctx,const char ** tsp)18867 __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp)
18868 {
18869 const char *ts = *tsp;
18870 int i = 0, number, ndim;
18871 ++ts;
18872 if (ctx->new_count != 1) {
18873 PyErr_SetString(PyExc_ValueError,
18874 "Cannot handle repeated arrays in format string");
18875 return NULL;
18876 }
18877 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
18878 ndim = ctx->head->field->type->ndim;
18879 while (*ts && *ts != ')') {
18880 switch (*ts) {
18881 case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue;
18882 default: break;
18883 }
18884 number = __Pyx_BufFmt_ExpectNumber(&ts);
18885 if (number == -1) return NULL;
18886 if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i])
18887 return PyErr_Format(PyExc_ValueError,
18888 "Expected a dimension of size %zu, got %d",
18889 ctx->head->field->type->arraysize[i], number);
18890 if (*ts != ',' && *ts != ')')
18891 return PyErr_Format(PyExc_ValueError,
18892 "Expected a comma in format string, got '%c'", *ts);
18893 if (*ts == ',') ts++;
18894 i++;
18895 }
18896 if (i != ndim)
18897 return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d",
18898 ctx->head->field->type->ndim, i);
18899 if (!*ts) {
18900 PyErr_SetString(PyExc_ValueError,
18901 "Unexpected end of format string, expected ')'");
18902 return NULL;
18903 }
18904 ctx->is_valid_array = 1;
18905 ctx->new_count = 1;
18906 *tsp = ++ts;
18907 return Py_None;
18908 }
__Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context * ctx,const char * ts)18909 static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) {
18910 int got_Z = 0;
18911 while (1) {
18912 switch(*ts) {
18913 case 0:
18914 if (ctx->enc_type != 0 && ctx->head == NULL) {
18915 __Pyx_BufFmt_RaiseExpected(ctx);
18916 return NULL;
18917 }
18918 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
18919 if (ctx->head != NULL) {
18920 __Pyx_BufFmt_RaiseExpected(ctx);
18921 return NULL;
18922 }
18923 return ts;
18924 case ' ':
18925 case '\r':
18926 case '\n':
18927 ++ts;
18928 break;
18929 case '<':
18930 if (!__Pyx_Is_Little_Endian()) {
18931 PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler");
18932 return NULL;
18933 }
18934 ctx->new_packmode = '=';
18935 ++ts;
18936 break;
18937 case '>':
18938 case '!':
18939 if (__Pyx_Is_Little_Endian()) {
18940 PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler");
18941 return NULL;
18942 }
18943 ctx->new_packmode = '=';
18944 ++ts;
18945 break;
18946 case '=':
18947 case '@':
18948 case '^':
18949 ctx->new_packmode = *ts++;
18950 break;
18951 case 'T':
18952 {
18953 const char* ts_after_sub;
18954 size_t i, struct_count = ctx->new_count;
18955 size_t struct_alignment = ctx->struct_alignment;
18956 ctx->new_count = 1;
18957 ++ts;
18958 if (*ts != '{') {
18959 PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'");
18960 return NULL;
18961 }
18962 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
18963 ctx->enc_type = 0;
18964 ctx->enc_count = 0;
18965 ctx->struct_alignment = 0;
18966 ++ts;
18967 ts_after_sub = ts;
18968 for (i = 0; i != struct_count; ++i) {
18969 ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts);
18970 if (!ts_after_sub) return NULL;
18971 }
18972 ts = ts_after_sub;
18973 if (struct_alignment) ctx->struct_alignment = struct_alignment;
18974 }
18975 break;
18976 case '}':
18977 {
18978 size_t alignment = ctx->struct_alignment;
18979 ++ts;
18980 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
18981 ctx->enc_type = 0;
18982 if (alignment && ctx->fmt_offset % alignment) {
18983 ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment);
18984 }
18985 }
18986 return ts;
18987 case 'x':
18988 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
18989 ctx->fmt_offset += ctx->new_count;
18990 ctx->new_count = 1;
18991 ctx->enc_count = 0;
18992 ctx->enc_type = 0;
18993 ctx->enc_packmode = ctx->new_packmode;
18994 ++ts;
18995 break;
18996 case 'Z':
18997 got_Z = 1;
18998 ++ts;
18999 if (*ts != 'f' && *ts != 'd' && *ts != 'g') {
19000 __Pyx_BufFmt_RaiseUnexpectedChar('Z');
19001 return NULL;
19002 }
19003 CYTHON_FALLTHROUGH;
19004 case '?': case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I':
19005 case 'l': case 'L': case 'q': case 'Q':
19006 case 'f': case 'd': case 'g':
19007 case 'O': case 'p':
19008 if ((ctx->enc_type == *ts) && (got_Z == ctx->is_complex) &&
19009 (ctx->enc_packmode == ctx->new_packmode) && (!ctx->is_valid_array)) {
19010 ctx->enc_count += ctx->new_count;
19011 ctx->new_count = 1;
19012 got_Z = 0;
19013 ++ts;
19014 break;
19015 }
19016 CYTHON_FALLTHROUGH;
19017 case 's':
19018 if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
19019 ctx->enc_count = ctx->new_count;
19020 ctx->enc_packmode = ctx->new_packmode;
19021 ctx->enc_type = *ts;
19022 ctx->is_complex = got_Z;
19023 ++ts;
19024 ctx->new_count = 1;
19025 got_Z = 0;
19026 break;
19027 case ':':
19028 ++ts;
19029 while(*ts != ':') ++ts;
19030 ++ts;
19031 break;
19032 case '(':
19033 if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL;
19034 break;
19035 default:
19036 {
19037 int number = __Pyx_BufFmt_ExpectNumber(&ts);
19038 if (number == -1) return NULL;
19039 ctx->new_count = (size_t)number;
19040 }
19041 }
19042 }
19043 }
19044
19045 /* BufferGetAndValidate */
__Pyx_SafeReleaseBuffer(Py_buffer * info)19046 static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) {
19047 if (unlikely(info->buf == NULL)) return;
19048 if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL;
19049 __Pyx_ReleaseBuffer(info);
19050 }
__Pyx_ZeroBuffer(Py_buffer * buf)19051 static void __Pyx_ZeroBuffer(Py_buffer* buf) {
19052 buf->buf = NULL;
19053 buf->obj = NULL;
19054 buf->strides = __Pyx_zeros;
19055 buf->shape = __Pyx_zeros;
19056 buf->suboffsets = __Pyx_minusones;
19057 }
__Pyx__GetBufferAndValidate(Py_buffer * buf,PyObject * obj,__Pyx_TypeInfo * dtype,int flags,int nd,int cast,__Pyx_BufFmt_StackElem * stack)19058 static int __Pyx__GetBufferAndValidate(
19059 Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags,
19060 int nd, int cast, __Pyx_BufFmt_StackElem* stack)
19061 {
19062 buf->buf = NULL;
19063 if (unlikely(__Pyx_GetBuffer(obj, buf, flags) == -1)) {
19064 __Pyx_ZeroBuffer(buf);
19065 return -1;
19066 }
19067 if (unlikely(buf->ndim != nd)) {
19068 PyErr_Format(PyExc_ValueError,
19069 "Buffer has wrong number of dimensions (expected %d, got %d)",
19070 nd, buf->ndim);
19071 goto fail;
19072 }
19073 if (!cast) {
19074 __Pyx_BufFmt_Context ctx;
19075 __Pyx_BufFmt_Init(&ctx, stack, dtype);
19076 if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
19077 }
19078 if (unlikely((size_t)buf->itemsize != dtype->size)) {
19079 PyErr_Format(PyExc_ValueError,
19080 "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)",
19081 buf->itemsize, (buf->itemsize > 1) ? "s" : "",
19082 dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : "");
19083 goto fail;
19084 }
19085 if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones;
19086 return 0;
19087 fail:;
19088 __Pyx_SafeReleaseBuffer(buf);
19089 return -1;
19090 }
19091
19092 /* BufferIndexError */
__Pyx_RaiseBufferIndexError(int axis)19093 static void __Pyx_RaiseBufferIndexError(int axis) {
19094 PyErr_Format(PyExc_IndexError,
19095 "Out of bounds on buffer access (axis %d)", axis);
19096 }
19097
19098 /* PyFunctionFastCall */
19099 #if CYTHON_FAST_PYCALL
__Pyx_PyFunction_FastCallNoKw(PyCodeObject * co,PyObject ** args,Py_ssize_t na,PyObject * globals)19100 static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na,
19101 PyObject *globals) {
19102 PyFrameObject *f;
19103 PyThreadState *tstate = __Pyx_PyThreadState_Current;
19104 PyObject **fastlocals;
19105 Py_ssize_t i;
19106 PyObject *result;
19107 assert(globals != NULL);
19108 /* XXX Perhaps we should create a specialized
19109 PyFrame_New() that doesn't take locals, but does
19110 take builtins without sanity checking them.
19111 */
19112 assert(tstate != NULL);
19113 f = PyFrame_New(tstate, co, globals, NULL);
19114 if (f == NULL) {
19115 return NULL;
19116 }
19117 fastlocals = __Pyx_PyFrame_GetLocalsplus(f);
19118 for (i = 0; i < na; i++) {
19119 Py_INCREF(*args);
19120 fastlocals[i] = *args++;
19121 }
19122 result = PyEval_EvalFrameEx(f,0);
19123 ++tstate->recursion_depth;
19124 Py_DECREF(f);
19125 --tstate->recursion_depth;
19126 return result;
19127 }
19128 #if 1 || PY_VERSION_HEX < 0x030600B1
__Pyx_PyFunction_FastCallDict(PyObject * func,PyObject ** args,Py_ssize_t nargs,PyObject * kwargs)19129 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) {
19130 PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func);
19131 PyObject *globals = PyFunction_GET_GLOBALS(func);
19132 PyObject *argdefs = PyFunction_GET_DEFAULTS(func);
19133 PyObject *closure;
19134 #if PY_MAJOR_VERSION >= 3
19135 PyObject *kwdefs;
19136 #endif
19137 PyObject *kwtuple, **k;
19138 PyObject **d;
19139 Py_ssize_t nd;
19140 Py_ssize_t nk;
19141 PyObject *result;
19142 assert(kwargs == NULL || PyDict_Check(kwargs));
19143 nk = kwargs ? PyDict_Size(kwargs) : 0;
19144 if (Py_EnterRecursiveCall((char*)" while calling a Python object")) {
19145 return NULL;
19146 }
19147 if (
19148 #if PY_MAJOR_VERSION >= 3
19149 co->co_kwonlyargcount == 0 &&
19150 #endif
19151 likely(kwargs == NULL || nk == 0) &&
19152 co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) {
19153 if (argdefs == NULL && co->co_argcount == nargs) {
19154 result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals);
19155 goto done;
19156 }
19157 else if (nargs == 0 && argdefs != NULL
19158 && co->co_argcount == Py_SIZE(argdefs)) {
19159 /* function called with no arguments, but all parameters have
19160 a default value: use default values as arguments .*/
19161 args = &PyTuple_GET_ITEM(argdefs, 0);
19162 result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals);
19163 goto done;
19164 }
19165 }
19166 if (kwargs != NULL) {
19167 Py_ssize_t pos, i;
19168 kwtuple = PyTuple_New(2 * nk);
19169 if (kwtuple == NULL) {
19170 result = NULL;
19171 goto done;
19172 }
19173 k = &PyTuple_GET_ITEM(kwtuple, 0);
19174 pos = i = 0;
19175 while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) {
19176 Py_INCREF(k[i]);
19177 Py_INCREF(k[i+1]);
19178 i += 2;
19179 }
19180 nk = i / 2;
19181 }
19182 else {
19183 kwtuple = NULL;
19184 k = NULL;
19185 }
19186 closure = PyFunction_GET_CLOSURE(func);
19187 #if PY_MAJOR_VERSION >= 3
19188 kwdefs = PyFunction_GET_KW_DEFAULTS(func);
19189 #endif
19190 if (argdefs != NULL) {
19191 d = &PyTuple_GET_ITEM(argdefs, 0);
19192 nd = Py_SIZE(argdefs);
19193 }
19194 else {
19195 d = NULL;
19196 nd = 0;
19197 }
19198 #if PY_MAJOR_VERSION >= 3
19199 result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL,
19200 args, (int)nargs,
19201 k, (int)nk,
19202 d, (int)nd, kwdefs, closure);
19203 #else
19204 result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL,
19205 args, (int)nargs,
19206 k, (int)nk,
19207 d, (int)nd, closure);
19208 #endif
19209 Py_XDECREF(kwtuple);
19210 done:
19211 Py_LeaveRecursiveCall();
19212 return result;
19213 }
19214 #endif
19215 #endif
19216
19217 /* PyCFunctionFastCall */
19218 #if CYTHON_FAST_PYCCALL
__Pyx_PyCFunction_FastCall(PyObject * func_obj,PyObject ** args,Py_ssize_t nargs)19219 static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) {
19220 PyCFunctionObject *func = (PyCFunctionObject*)func_obj;
19221 PyCFunction meth = PyCFunction_GET_FUNCTION(func);
19222 PyObject *self = PyCFunction_GET_SELF(func);
19223 int flags = PyCFunction_GET_FLAGS(func);
19224 assert(PyCFunction_Check(func));
19225 assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)));
19226 assert(nargs >= 0);
19227 assert(nargs == 0 || args != NULL);
19228 /* _PyCFunction_FastCallDict() must not be called with an exception set,
19229 because it may clear it (directly or indirectly) and so the
19230 caller loses its exception */
19231 assert(!PyErr_Occurred());
19232 if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) {
19233 return (*((__Pyx_PyCFunctionFastWithKeywords)(void*)meth)) (self, args, nargs, NULL);
19234 } else {
19235 return (*((__Pyx_PyCFunctionFast)(void*)meth)) (self, args, nargs);
19236 }
19237 }
19238 #endif
19239
19240 /* PyObjectCallMethO */
19241 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx_PyObject_CallMethO(PyObject * func,PyObject * arg)19242 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
19243 PyObject *self, *result;
19244 PyCFunction cfunc;
19245 cfunc = PyCFunction_GET_FUNCTION(func);
19246 self = PyCFunction_GET_SELF(func);
19247 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
19248 return NULL;
19249 result = cfunc(self, arg);
19250 Py_LeaveRecursiveCall();
19251 if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
19252 PyErr_SetString(
19253 PyExc_SystemError,
19254 "NULL result without error in PyObject_Call");
19255 }
19256 return result;
19257 }
19258 #endif
19259
19260 /* PyObjectCallNoArg */
19261 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx_PyObject_CallNoArg(PyObject * func)19262 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) {
19263 #if CYTHON_FAST_PYCALL
19264 if (PyFunction_Check(func)) {
19265 return __Pyx_PyFunction_FastCall(func, NULL, 0);
19266 }
19267 #endif
19268 #ifdef __Pyx_CyFunction_USED
19269 if (likely(PyCFunction_Check(func) || __Pyx_CyFunction_Check(func)))
19270 #else
19271 if (likely(PyCFunction_Check(func)))
19272 #endif
19273 {
19274 if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) {
19275 return __Pyx_PyObject_CallMethO(func, NULL);
19276 }
19277 }
19278 return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL);
19279 }
19280 #endif
19281
19282 /* PyObjectCallOneArg */
19283 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx__PyObject_CallOneArg(PyObject * func,PyObject * arg)19284 static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
19285 PyObject *result;
19286 PyObject *args = PyTuple_New(1);
19287 if (unlikely(!args)) return NULL;
19288 Py_INCREF(arg);
19289 PyTuple_SET_ITEM(args, 0, arg);
19290 result = __Pyx_PyObject_Call(func, args, NULL);
19291 Py_DECREF(args);
19292 return result;
19293 }
__Pyx_PyObject_CallOneArg(PyObject * func,PyObject * arg)19294 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
19295 #if CYTHON_FAST_PYCALL
19296 if (PyFunction_Check(func)) {
19297 return __Pyx_PyFunction_FastCall(func, &arg, 1);
19298 }
19299 #endif
19300 if (likely(PyCFunction_Check(func))) {
19301 if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
19302 return __Pyx_PyObject_CallMethO(func, arg);
19303 #if CYTHON_FAST_PYCCALL
19304 } else if (__Pyx_PyFastCFunction_Check(func)) {
19305 return __Pyx_PyCFunction_FastCall(func, &arg, 1);
19306 #endif
19307 }
19308 }
19309 return __Pyx__PyObject_CallOneArg(func, arg);
19310 }
19311 #else
__Pyx_PyObject_CallOneArg(PyObject * func,PyObject * arg)19312 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
19313 PyObject *result;
19314 PyObject *args = PyTuple_Pack(1, arg);
19315 if (unlikely(!args)) return NULL;
19316 result = __Pyx_PyObject_Call(func, args, NULL);
19317 Py_DECREF(args);
19318 return result;
19319 }
19320 #endif
19321
19322 /* PyObjectCall2Args */
__Pyx_PyObject_Call2Args(PyObject * function,PyObject * arg1,PyObject * arg2)19323 static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) {
19324 PyObject *args, *result = NULL;
19325 #if CYTHON_FAST_PYCALL
19326 if (PyFunction_Check(function)) {
19327 PyObject *args[2] = {arg1, arg2};
19328 return __Pyx_PyFunction_FastCall(function, args, 2);
19329 }
19330 #endif
19331 #if CYTHON_FAST_PYCCALL
19332 if (__Pyx_PyFastCFunction_Check(function)) {
19333 PyObject *args[2] = {arg1, arg2};
19334 return __Pyx_PyCFunction_FastCall(function, args, 2);
19335 }
19336 #endif
19337 args = PyTuple_New(2);
19338 if (unlikely(!args)) goto done;
19339 Py_INCREF(arg1);
19340 PyTuple_SET_ITEM(args, 0, arg1);
19341 Py_INCREF(arg2);
19342 PyTuple_SET_ITEM(args, 1, arg2);
19343 Py_INCREF(function);
19344 result = __Pyx_PyObject_Call(function, args, NULL);
19345 Py_DECREF(args);
19346 Py_DECREF(function);
19347 done:
19348 return result;
19349 }
19350
19351 /* PyObjectGetMethod */
__Pyx_PyObject_GetMethod(PyObject * obj,PyObject * name,PyObject ** method)19352 static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) {
19353 PyObject *attr;
19354 #if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP
19355 PyTypeObject *tp = Py_TYPE(obj);
19356 PyObject *descr;
19357 descrgetfunc f = NULL;
19358 PyObject **dictptr, *dict;
19359 int meth_found = 0;
19360 assert (*method == NULL);
19361 if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) {
19362 attr = __Pyx_PyObject_GetAttrStr(obj, name);
19363 goto try_unpack;
19364 }
19365 if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) {
19366 return 0;
19367 }
19368 descr = _PyType_Lookup(tp, name);
19369 if (likely(descr != NULL)) {
19370 Py_INCREF(descr);
19371 #if PY_MAJOR_VERSION >= 3
19372 #ifdef __Pyx_CyFunction_USED
19373 if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr)))
19374 #else
19375 if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type)))
19376 #endif
19377 #else
19378 #ifdef __Pyx_CyFunction_USED
19379 if (likely(PyFunction_Check(descr) || __Pyx_CyFunction_Check(descr)))
19380 #else
19381 if (likely(PyFunction_Check(descr)))
19382 #endif
19383 #endif
19384 {
19385 meth_found = 1;
19386 } else {
19387 f = Py_TYPE(descr)->tp_descr_get;
19388 if (f != NULL && PyDescr_IsData(descr)) {
19389 attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
19390 Py_DECREF(descr);
19391 goto try_unpack;
19392 }
19393 }
19394 }
19395 dictptr = _PyObject_GetDictPtr(obj);
19396 if (dictptr != NULL && (dict = *dictptr) != NULL) {
19397 Py_INCREF(dict);
19398 attr = __Pyx_PyDict_GetItemStr(dict, name);
19399 if (attr != NULL) {
19400 Py_INCREF(attr);
19401 Py_DECREF(dict);
19402 Py_XDECREF(descr);
19403 goto try_unpack;
19404 }
19405 Py_DECREF(dict);
19406 }
19407 if (meth_found) {
19408 *method = descr;
19409 return 1;
19410 }
19411 if (f != NULL) {
19412 attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
19413 Py_DECREF(descr);
19414 goto try_unpack;
19415 }
19416 if (descr != NULL) {
19417 *method = descr;
19418 return 0;
19419 }
19420 PyErr_Format(PyExc_AttributeError,
19421 #if PY_MAJOR_VERSION >= 3
19422 "'%.50s' object has no attribute '%U'",
19423 tp->tp_name, name);
19424 #else
19425 "'%.50s' object has no attribute '%.400s'",
19426 tp->tp_name, PyString_AS_STRING(name));
19427 #endif
19428 return 0;
19429 #else
19430 attr = __Pyx_PyObject_GetAttrStr(obj, name);
19431 goto try_unpack;
19432 #endif
19433 try_unpack:
19434 #if CYTHON_UNPACK_METHODS
19435 if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) {
19436 PyObject *function = PyMethod_GET_FUNCTION(attr);
19437 Py_INCREF(function);
19438 Py_DECREF(attr);
19439 *method = function;
19440 return 1;
19441 }
19442 #endif
19443 *method = attr;
19444 return 0;
19445 }
19446
19447 /* PyObjectCallMethod1 */
__Pyx__PyObject_CallMethod1(PyObject * method,PyObject * arg)19448 static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) {
19449 PyObject *result = __Pyx_PyObject_CallOneArg(method, arg);
19450 Py_DECREF(method);
19451 return result;
19452 }
__Pyx_PyObject_CallMethod1(PyObject * obj,PyObject * method_name,PyObject * arg)19453 static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) {
19454 PyObject *method = NULL, *result;
19455 int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
19456 if (likely(is_method)) {
19457 result = __Pyx_PyObject_Call2Args(method, obj, arg);
19458 Py_DECREF(method);
19459 return result;
19460 }
19461 if (unlikely(!method)) return NULL;
19462 return __Pyx__PyObject_CallMethod1(method, arg);
19463 }
19464
19465 /* append */
__Pyx_PyObject_Append(PyObject * L,PyObject * x)19466 static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) {
19467 if (likely(PyList_CheckExact(L))) {
19468 if (unlikely(__Pyx_PyList_Append(L, x) < 0)) return -1;
19469 } else {
19470 PyObject* retval = __Pyx_PyObject_CallMethod1(L, __pyx_n_s_append, x);
19471 if (unlikely(!retval))
19472 return -1;
19473 Py_DECREF(retval);
19474 }
19475 return 0;
19476 }
19477
19478 /* RaiseTooManyValuesToUnpack */
__Pyx_RaiseTooManyValuesError(Py_ssize_t expected)19479 static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
19480 PyErr_Format(PyExc_ValueError,
19481 "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
19482 }
19483
19484 /* RaiseNeedMoreValuesToUnpack */
__Pyx_RaiseNeedMoreValuesError(Py_ssize_t index)19485 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
19486 PyErr_Format(PyExc_ValueError,
19487 "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
19488 index, (index == 1) ? "" : "s");
19489 }
19490
19491 /* IterFinish */
__Pyx_IterFinish(void)19492 static CYTHON_INLINE int __Pyx_IterFinish(void) {
19493 #if CYTHON_FAST_THREAD_STATE
19494 PyThreadState *tstate = __Pyx_PyThreadState_Current;
19495 PyObject* exc_type = tstate->curexc_type;
19496 if (unlikely(exc_type)) {
19497 if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) {
19498 PyObject *exc_value, *exc_tb;
19499 exc_value = tstate->curexc_value;
19500 exc_tb = tstate->curexc_traceback;
19501 tstate->curexc_type = 0;
19502 tstate->curexc_value = 0;
19503 tstate->curexc_traceback = 0;
19504 Py_DECREF(exc_type);
19505 Py_XDECREF(exc_value);
19506 Py_XDECREF(exc_tb);
19507 return 0;
19508 } else {
19509 return -1;
19510 }
19511 }
19512 return 0;
19513 #else
19514 if (unlikely(PyErr_Occurred())) {
19515 if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
19516 PyErr_Clear();
19517 return 0;
19518 } else {
19519 return -1;
19520 }
19521 }
19522 return 0;
19523 #endif
19524 }
19525
19526 /* UnpackItemEndCheck */
__Pyx_IternextUnpackEndCheck(PyObject * retval,Py_ssize_t expected)19527 static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
19528 if (unlikely(retval)) {
19529 Py_DECREF(retval);
19530 __Pyx_RaiseTooManyValuesError(expected);
19531 return -1;
19532 } else {
19533 return __Pyx_IterFinish();
19534 }
19535 return 0;
19536 }
19537
19538 /* None */
__Pyx_div_long(long a,long b)19539 static CYTHON_INLINE long __Pyx_div_long(long a, long b) {
19540 long q = a / b;
19541 long r = a - q*b;
19542 q -= ((r != 0) & ((r ^ b) < 0));
19543 return q;
19544 }
19545
19546 /* RaiseException */
19547 #if PY_MAJOR_VERSION < 3
__Pyx_Raise(PyObject * type,PyObject * value,PyObject * tb,CYTHON_UNUSED PyObject * cause)19548 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
19549 CYTHON_UNUSED PyObject *cause) {
19550 __Pyx_PyThreadState_declare
19551 Py_XINCREF(type);
19552 if (!value || value == Py_None)
19553 value = NULL;
19554 else
19555 Py_INCREF(value);
19556 if (!tb || tb == Py_None)
19557 tb = NULL;
19558 else {
19559 Py_INCREF(tb);
19560 if (!PyTraceBack_Check(tb)) {
19561 PyErr_SetString(PyExc_TypeError,
19562 "raise: arg 3 must be a traceback or None");
19563 goto raise_error;
19564 }
19565 }
19566 if (PyType_Check(type)) {
19567 #if CYTHON_COMPILING_IN_PYPY
19568 if (!value) {
19569 Py_INCREF(Py_None);
19570 value = Py_None;
19571 }
19572 #endif
19573 PyErr_NormalizeException(&type, &value, &tb);
19574 } else {
19575 if (value) {
19576 PyErr_SetString(PyExc_TypeError,
19577 "instance exception may not have a separate value");
19578 goto raise_error;
19579 }
19580 value = type;
19581 type = (PyObject*) Py_TYPE(type);
19582 Py_INCREF(type);
19583 if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
19584 PyErr_SetString(PyExc_TypeError,
19585 "raise: exception class must be a subclass of BaseException");
19586 goto raise_error;
19587 }
19588 }
19589 __Pyx_PyThreadState_assign
19590 __Pyx_ErrRestore(type, value, tb);
19591 return;
19592 raise_error:
19593 Py_XDECREF(value);
19594 Py_XDECREF(type);
19595 Py_XDECREF(tb);
19596 return;
19597 }
19598 #else
__Pyx_Raise(PyObject * type,PyObject * value,PyObject * tb,PyObject * cause)19599 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
19600 PyObject* owned_instance = NULL;
19601 if (tb == Py_None) {
19602 tb = 0;
19603 } else if (tb && !PyTraceBack_Check(tb)) {
19604 PyErr_SetString(PyExc_TypeError,
19605 "raise: arg 3 must be a traceback or None");
19606 goto bad;
19607 }
19608 if (value == Py_None)
19609 value = 0;
19610 if (PyExceptionInstance_Check(type)) {
19611 if (value) {
19612 PyErr_SetString(PyExc_TypeError,
19613 "instance exception may not have a separate value");
19614 goto bad;
19615 }
19616 value = type;
19617 type = (PyObject*) Py_TYPE(value);
19618 } else if (PyExceptionClass_Check(type)) {
19619 PyObject *instance_class = NULL;
19620 if (value && PyExceptionInstance_Check(value)) {
19621 instance_class = (PyObject*) Py_TYPE(value);
19622 if (instance_class != type) {
19623 int is_subclass = PyObject_IsSubclass(instance_class, type);
19624 if (!is_subclass) {
19625 instance_class = NULL;
19626 } else if (unlikely(is_subclass == -1)) {
19627 goto bad;
19628 } else {
19629 type = instance_class;
19630 }
19631 }
19632 }
19633 if (!instance_class) {
19634 PyObject *args;
19635 if (!value)
19636 args = PyTuple_New(0);
19637 else if (PyTuple_Check(value)) {
19638 Py_INCREF(value);
19639 args = value;
19640 } else
19641 args = PyTuple_Pack(1, value);
19642 if (!args)
19643 goto bad;
19644 owned_instance = PyObject_Call(type, args, NULL);
19645 Py_DECREF(args);
19646 if (!owned_instance)
19647 goto bad;
19648 value = owned_instance;
19649 if (!PyExceptionInstance_Check(value)) {
19650 PyErr_Format(PyExc_TypeError,
19651 "calling %R should have returned an instance of "
19652 "BaseException, not %R",
19653 type, Py_TYPE(value));
19654 goto bad;
19655 }
19656 }
19657 } else {
19658 PyErr_SetString(PyExc_TypeError,
19659 "raise: exception class must be a subclass of BaseException");
19660 goto bad;
19661 }
19662 if (cause) {
19663 PyObject *fixed_cause;
19664 if (cause == Py_None) {
19665 fixed_cause = NULL;
19666 } else if (PyExceptionClass_Check(cause)) {
19667 fixed_cause = PyObject_CallObject(cause, NULL);
19668 if (fixed_cause == NULL)
19669 goto bad;
19670 } else if (PyExceptionInstance_Check(cause)) {
19671 fixed_cause = cause;
19672 Py_INCREF(fixed_cause);
19673 } else {
19674 PyErr_SetString(PyExc_TypeError,
19675 "exception causes must derive from "
19676 "BaseException");
19677 goto bad;
19678 }
19679 PyException_SetCause(value, fixed_cause);
19680 }
19681 PyErr_SetObject(type, value);
19682 if (tb) {
19683 #if CYTHON_COMPILING_IN_PYPY
19684 PyObject *tmp_type, *tmp_value, *tmp_tb;
19685 PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb);
19686 Py_INCREF(tb);
19687 PyErr_Restore(tmp_type, tmp_value, tb);
19688 Py_XDECREF(tmp_tb);
19689 #else
19690 PyThreadState *tstate = __Pyx_PyThreadState_Current;
19691 PyObject* tmp_tb = tstate->curexc_traceback;
19692 if (tb != tmp_tb) {
19693 Py_INCREF(tb);
19694 tstate->curexc_traceback = tb;
19695 Py_XDECREF(tmp_tb);
19696 }
19697 #endif
19698 }
19699 bad:
19700 Py_XDECREF(owned_instance);
19701 return;
19702 }
19703 #endif
19704
19705 /* GetItemInt */
__Pyx_GetItemInt_Generic(PyObject * o,PyObject * j)19706 static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
19707 PyObject *r;
19708 if (!j) return NULL;
19709 r = PyObject_GetItem(o, j);
19710 Py_DECREF(j);
19711 return r;
19712 }
__Pyx_GetItemInt_List_Fast(PyObject * o,Py_ssize_t i,CYTHON_NCP_UNUSED int wraparound,CYTHON_NCP_UNUSED int boundscheck)19713 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
19714 CYTHON_NCP_UNUSED int wraparound,
19715 CYTHON_NCP_UNUSED int boundscheck) {
19716 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
19717 Py_ssize_t wrapped_i = i;
19718 if (wraparound & unlikely(i < 0)) {
19719 wrapped_i += PyList_GET_SIZE(o);
19720 }
19721 if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) {
19722 PyObject *r = PyList_GET_ITEM(o, wrapped_i);
19723 Py_INCREF(r);
19724 return r;
19725 }
19726 return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
19727 #else
19728 return PySequence_GetItem(o, i);
19729 #endif
19730 }
__Pyx_GetItemInt_Tuple_Fast(PyObject * o,Py_ssize_t i,CYTHON_NCP_UNUSED int wraparound,CYTHON_NCP_UNUSED int boundscheck)19731 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
19732 CYTHON_NCP_UNUSED int wraparound,
19733 CYTHON_NCP_UNUSED int boundscheck) {
19734 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
19735 Py_ssize_t wrapped_i = i;
19736 if (wraparound & unlikely(i < 0)) {
19737 wrapped_i += PyTuple_GET_SIZE(o);
19738 }
19739 if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) {
19740 PyObject *r = PyTuple_GET_ITEM(o, wrapped_i);
19741 Py_INCREF(r);
19742 return r;
19743 }
19744 return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
19745 #else
19746 return PySequence_GetItem(o, i);
19747 #endif
19748 }
__Pyx_GetItemInt_Fast(PyObject * o,Py_ssize_t i,int is_list,CYTHON_NCP_UNUSED int wraparound,CYTHON_NCP_UNUSED int boundscheck)19749 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list,
19750 CYTHON_NCP_UNUSED int wraparound,
19751 CYTHON_NCP_UNUSED int boundscheck) {
19752 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
19753 if (is_list || PyList_CheckExact(o)) {
19754 Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
19755 if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) {
19756 PyObject *r = PyList_GET_ITEM(o, n);
19757 Py_INCREF(r);
19758 return r;
19759 }
19760 }
19761 else if (PyTuple_CheckExact(o)) {
19762 Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
19763 if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) {
19764 PyObject *r = PyTuple_GET_ITEM(o, n);
19765 Py_INCREF(r);
19766 return r;
19767 }
19768 } else {
19769 PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
19770 if (likely(m && m->sq_item)) {
19771 if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
19772 Py_ssize_t l = m->sq_length(o);
19773 if (likely(l >= 0)) {
19774 i += l;
19775 } else {
19776 if (!PyErr_ExceptionMatches(PyExc_OverflowError))
19777 return NULL;
19778 PyErr_Clear();
19779 }
19780 }
19781 return m->sq_item(o, i);
19782 }
19783 }
19784 #else
19785 if (is_list || PySequence_Check(o)) {
19786 return PySequence_GetItem(o, i);
19787 }
19788 #endif
19789 return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
19790 }
19791
19792 /* PyIntBinop */
19793 #if !CYTHON_COMPILING_IN_PYPY
__Pyx_PyInt_SubtractObjC(PyObject * op1,PyObject * op2,CYTHON_UNUSED long intval,int inplace,int zerodivision_check)19794 static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
19795 (void)inplace;
19796 (void)zerodivision_check;
19797 #if PY_MAJOR_VERSION < 3
19798 if (likely(PyInt_CheckExact(op1))) {
19799 const long b = intval;
19800 long x;
19801 long a = PyInt_AS_LONG(op1);
19802 x = (long)((unsigned long)a - b);
19803 if (likely((x^a) >= 0 || (x^~b) >= 0))
19804 return PyInt_FromLong(x);
19805 return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
19806 }
19807 #endif
19808 #if CYTHON_USE_PYLONG_INTERNALS
19809 if (likely(PyLong_CheckExact(op1))) {
19810 const long b = intval;
19811 long a, x;
19812 #ifdef HAVE_LONG_LONG
19813 const PY_LONG_LONG llb = intval;
19814 PY_LONG_LONG lla, llx;
19815 #endif
19816 const digit* digits = ((PyLongObject*)op1)->ob_digit;
19817 const Py_ssize_t size = Py_SIZE(op1);
19818 if (likely(__Pyx_sst_abs(size) <= 1)) {
19819 a = likely(size) ? digits[0] : 0;
19820 if (size == -1) a = -a;
19821 } else {
19822 switch (size) {
19823 case -2:
19824 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
19825 a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
19826 break;
19827 #ifdef HAVE_LONG_LONG
19828 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
19829 lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
19830 goto long_long;
19831 #endif
19832 }
19833 CYTHON_FALLTHROUGH;
19834 case 2:
19835 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
19836 a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
19837 break;
19838 #ifdef HAVE_LONG_LONG
19839 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
19840 lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
19841 goto long_long;
19842 #endif
19843 }
19844 CYTHON_FALLTHROUGH;
19845 case -3:
19846 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
19847 a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
19848 break;
19849 #ifdef HAVE_LONG_LONG
19850 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
19851 lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
19852 goto long_long;
19853 #endif
19854 }
19855 CYTHON_FALLTHROUGH;
19856 case 3:
19857 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
19858 a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
19859 break;
19860 #ifdef HAVE_LONG_LONG
19861 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
19862 lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
19863 goto long_long;
19864 #endif
19865 }
19866 CYTHON_FALLTHROUGH;
19867 case -4:
19868 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
19869 a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
19870 break;
19871 #ifdef HAVE_LONG_LONG
19872 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
19873 lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
19874 goto long_long;
19875 #endif
19876 }
19877 CYTHON_FALLTHROUGH;
19878 case 4:
19879 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
19880 a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
19881 break;
19882 #ifdef HAVE_LONG_LONG
19883 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
19884 lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
19885 goto long_long;
19886 #endif
19887 }
19888 CYTHON_FALLTHROUGH;
19889 default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
19890 }
19891 }
19892 x = a - b;
19893 return PyLong_FromLong(x);
19894 #ifdef HAVE_LONG_LONG
19895 long_long:
19896 llx = lla - llb;
19897 return PyLong_FromLongLong(llx);
19898 #endif
19899
19900
19901 }
19902 #endif
19903 if (PyFloat_CheckExact(op1)) {
19904 const long b = intval;
19905 double a = PyFloat_AS_DOUBLE(op1);
19906 double result;
19907 PyFPE_START_PROTECT("subtract", return NULL)
19908 result = ((double)a) - (double)b;
19909 PyFPE_END_PROTECT(result)
19910 return PyFloat_FromDouble(result);
19911 }
19912 return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2);
19913 }
19914 #endif
19915
19916 /* PyIntCompare */
__Pyx_PyInt_EqObjC(PyObject * op1,PyObject * op2,CYTHON_UNUSED long intval,CYTHON_UNUSED long inplace)19917 static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED long inplace) {
19918 if (op1 == op2) {
19919 Py_RETURN_TRUE;
19920 }
19921 #if PY_MAJOR_VERSION < 3
19922 if (likely(PyInt_CheckExact(op1))) {
19923 const long b = intval;
19924 long a = PyInt_AS_LONG(op1);
19925 if (a == b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
19926 }
19927 #endif
19928 #if CYTHON_USE_PYLONG_INTERNALS
19929 if (likely(PyLong_CheckExact(op1))) {
19930 int unequal;
19931 unsigned long uintval;
19932 Py_ssize_t size = Py_SIZE(op1);
19933 const digit* digits = ((PyLongObject*)op1)->ob_digit;
19934 if (intval == 0) {
19935 if (size == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
19936 } else if (intval < 0) {
19937 if (size >= 0)
19938 Py_RETURN_FALSE;
19939 intval = -intval;
19940 size = -size;
19941 } else {
19942 if (size <= 0)
19943 Py_RETURN_FALSE;
19944 }
19945 uintval = (unsigned long) intval;
19946 #if PyLong_SHIFT * 4 < SIZEOF_LONG*8
19947 if (uintval >> (PyLong_SHIFT * 4)) {
19948 unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
19949 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
19950 } else
19951 #endif
19952 #if PyLong_SHIFT * 3 < SIZEOF_LONG*8
19953 if (uintval >> (PyLong_SHIFT * 3)) {
19954 unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
19955 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
19956 } else
19957 #endif
19958 #if PyLong_SHIFT * 2 < SIZEOF_LONG*8
19959 if (uintval >> (PyLong_SHIFT * 2)) {
19960 unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
19961 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
19962 } else
19963 #endif
19964 #if PyLong_SHIFT * 1 < SIZEOF_LONG*8
19965 if (uintval >> (PyLong_SHIFT * 1)) {
19966 unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
19967 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
19968 } else
19969 #endif
19970 unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK));
19971 if (unequal == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
19972 }
19973 #endif
19974 if (PyFloat_CheckExact(op1)) {
19975 const long b = intval;
19976 double a = PyFloat_AS_DOUBLE(op1);
19977 if ((double)a == (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
19978 }
19979 return (
19980 PyObject_RichCompare(op1, op2, Py_EQ));
19981 }
19982
19983 /* PyIntBinop */
19984 #if !CYTHON_COMPILING_IN_PYPY
19985 #if PY_MAJOR_VERSION < 3 || CYTHON_USE_PYLONG_INTERNALS
19986 #define __Pyx_PyInt_RemainderObjC_ZeroDivisionError(operand)\
19987 if (unlikely(zerodivision_check && ((operand) == 0))) {\
19988 PyErr_SetString(PyExc_ZeroDivisionError, "integer division or modulo by zero");\
19989 return NULL;\
19990 }
19991 #endif
__Pyx_PyInt_RemainderObjC(PyObject * op1,PyObject * op2,CYTHON_UNUSED long intval,int inplace,int zerodivision_check)19992 static PyObject* __Pyx_PyInt_RemainderObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
19993 (void)inplace;
19994 (void)zerodivision_check;
19995 #if PY_MAJOR_VERSION < 3
19996 if (likely(PyInt_CheckExact(op1))) {
19997 const long b = intval;
19998 long x;
19999 long a = PyInt_AS_LONG(op1);
20000 __Pyx_PyInt_RemainderObjC_ZeroDivisionError(b)
20001 x = a % b;
20002 x += ((x != 0) & ((x ^ b) < 0)) * b;
20003 return PyInt_FromLong(x);
20004 }
20005 #endif
20006 #if CYTHON_USE_PYLONG_INTERNALS
20007 if (likely(PyLong_CheckExact(op1))) {
20008 const long b = intval;
20009 long a, x;
20010 #ifdef HAVE_LONG_LONG
20011 const PY_LONG_LONG llb = intval;
20012 PY_LONG_LONG lla, llx;
20013 #endif
20014 const digit* digits = ((PyLongObject*)op1)->ob_digit;
20015 const Py_ssize_t size = Py_SIZE(op1);
20016 if (likely(__Pyx_sst_abs(size) <= 1)) {
20017 a = likely(size) ? digits[0] : 0;
20018 if (size == -1) a = -a;
20019 } else {
20020 switch (size) {
20021 case -2:
20022 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
20023 a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
20024 break;
20025 #ifdef HAVE_LONG_LONG
20026 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
20027 lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
20028 goto long_long;
20029 #endif
20030 }
20031 CYTHON_FALLTHROUGH;
20032 case 2:
20033 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
20034 a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
20035 break;
20036 #ifdef HAVE_LONG_LONG
20037 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
20038 lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
20039 goto long_long;
20040 #endif
20041 }
20042 CYTHON_FALLTHROUGH;
20043 case -3:
20044 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
20045 a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
20046 break;
20047 #ifdef HAVE_LONG_LONG
20048 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
20049 lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
20050 goto long_long;
20051 #endif
20052 }
20053 CYTHON_FALLTHROUGH;
20054 case 3:
20055 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
20056 a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
20057 break;
20058 #ifdef HAVE_LONG_LONG
20059 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
20060 lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
20061 goto long_long;
20062 #endif
20063 }
20064 CYTHON_FALLTHROUGH;
20065 case -4:
20066 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
20067 a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
20068 break;
20069 #ifdef HAVE_LONG_LONG
20070 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
20071 lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
20072 goto long_long;
20073 #endif
20074 }
20075 CYTHON_FALLTHROUGH;
20076 case 4:
20077 if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
20078 a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
20079 break;
20080 #ifdef HAVE_LONG_LONG
20081 } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
20082 lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
20083 goto long_long;
20084 #endif
20085 }
20086 CYTHON_FALLTHROUGH;
20087 default: return PyLong_Type.tp_as_number->nb_remainder(op1, op2);
20088 }
20089 }
20090 __Pyx_PyInt_RemainderObjC_ZeroDivisionError(b)
20091 x = a % b;
20092 x += ((x != 0) & ((x ^ b) < 0)) * b;
20093 return PyLong_FromLong(x);
20094 #ifdef HAVE_LONG_LONG
20095 long_long:
20096 llx = lla % llb;
20097 llx += ((llx != 0) & ((llx ^ llb) < 0)) * llb;
20098 return PyLong_FromLongLong(llx);
20099 #endif
20100
20101
20102 }
20103 #endif
20104 return (inplace ? PyNumber_InPlaceRemainder : PyNumber_Remainder)(op1, op2);
20105 }
20106 #endif
20107
20108 /* BufferFallbackError */
__Pyx_RaiseBufferFallbackError(void)20109 static void __Pyx_RaiseBufferFallbackError(void) {
20110 PyErr_SetString(PyExc_ValueError,
20111 "Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!");
20112 }
20113
20114 /* Import */
__Pyx_Import(PyObject * name,PyObject * from_list,int level)20115 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
20116 PyObject *empty_list = 0;
20117 PyObject *module = 0;
20118 PyObject *global_dict = 0;
20119 PyObject *empty_dict = 0;
20120 PyObject *list;
20121 #if PY_MAJOR_VERSION < 3
20122 PyObject *py_import;
20123 py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
20124 if (!py_import)
20125 goto bad;
20126 #endif
20127 if (from_list)
20128 list = from_list;
20129 else {
20130 empty_list = PyList_New(0);
20131 if (!empty_list)
20132 goto bad;
20133 list = empty_list;
20134 }
20135 global_dict = PyModule_GetDict(__pyx_m);
20136 if (!global_dict)
20137 goto bad;
20138 empty_dict = PyDict_New();
20139 if (!empty_dict)
20140 goto bad;
20141 {
20142 #if PY_MAJOR_VERSION >= 3
20143 if (level == -1) {
20144 if ((1) && (strchr(__Pyx_MODULE_NAME, '.'))) {
20145 module = PyImport_ImportModuleLevelObject(
20146 name, global_dict, empty_dict, list, 1);
20147 if (!module) {
20148 if (!PyErr_ExceptionMatches(PyExc_ImportError))
20149 goto bad;
20150 PyErr_Clear();
20151 }
20152 }
20153 level = 0;
20154 }
20155 #endif
20156 if (!module) {
20157 #if PY_MAJOR_VERSION < 3
20158 PyObject *py_level = PyInt_FromLong(level);
20159 if (!py_level)
20160 goto bad;
20161 module = PyObject_CallFunctionObjArgs(py_import,
20162 name, global_dict, empty_dict, list, py_level, (PyObject *)NULL);
20163 Py_DECREF(py_level);
20164 #else
20165 module = PyImport_ImportModuleLevelObject(
20166 name, global_dict, empty_dict, list, level);
20167 #endif
20168 }
20169 }
20170 bad:
20171 #if PY_MAJOR_VERSION < 3
20172 Py_XDECREF(py_import);
20173 #endif
20174 Py_XDECREF(empty_list);
20175 Py_XDECREF(empty_dict);
20176 return module;
20177 }
20178
20179 /* ImportFrom */
__Pyx_ImportFrom(PyObject * module,PyObject * name)20180 static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
20181 PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
20182 if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
20183 PyErr_Format(PyExc_ImportError,
20184 #if PY_MAJOR_VERSION < 3
20185 "cannot import name %.230s", PyString_AS_STRING(name));
20186 #else
20187 "cannot import name %S", name);
20188 #endif
20189 }
20190 return value;
20191 }
20192
20193 /* HasAttr */
__Pyx_HasAttr(PyObject * o,PyObject * n)20194 static CYTHON_INLINE int __Pyx_HasAttr(PyObject *o, PyObject *n) {
20195 PyObject *r;
20196 if (unlikely(!__Pyx_PyBaseString_Check(n))) {
20197 PyErr_SetString(PyExc_TypeError,
20198 "hasattr(): attribute name must be string");
20199 return -1;
20200 }
20201 r = __Pyx_GetAttr(o, n);
20202 if (unlikely(!r)) {
20203 PyErr_Clear();
20204 return 0;
20205 } else {
20206 Py_DECREF(r);
20207 return 1;
20208 }
20209 }
20210
20211 /* GetTopmostException */
20212 #if CYTHON_USE_EXC_INFO_STACK
20213 static _PyErr_StackItem *
__Pyx_PyErr_GetTopmostException(PyThreadState * tstate)20214 __Pyx_PyErr_GetTopmostException(PyThreadState *tstate)
20215 {
20216 _PyErr_StackItem *exc_info = tstate->exc_info;
20217 while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) &&
20218 exc_info->previous_item != NULL)
20219 {
20220 exc_info = exc_info->previous_item;
20221 }
20222 return exc_info;
20223 }
20224 #endif
20225
20226 /* SaveResetException */
20227 #if CYTHON_FAST_THREAD_STATE
__Pyx__ExceptionSave(PyThreadState * tstate,PyObject ** type,PyObject ** value,PyObject ** tb)20228 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
20229 #if CYTHON_USE_EXC_INFO_STACK
20230 _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate);
20231 *type = exc_info->exc_type;
20232 *value = exc_info->exc_value;
20233 *tb = exc_info->exc_traceback;
20234 #else
20235 *type = tstate->exc_type;
20236 *value = tstate->exc_value;
20237 *tb = tstate->exc_traceback;
20238 #endif
20239 Py_XINCREF(*type);
20240 Py_XINCREF(*value);
20241 Py_XINCREF(*tb);
20242 }
__Pyx__ExceptionReset(PyThreadState * tstate,PyObject * type,PyObject * value,PyObject * tb)20243 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
20244 PyObject *tmp_type, *tmp_value, *tmp_tb;
20245 #if CYTHON_USE_EXC_INFO_STACK
20246 _PyErr_StackItem *exc_info = tstate->exc_info;
20247 tmp_type = exc_info->exc_type;
20248 tmp_value = exc_info->exc_value;
20249 tmp_tb = exc_info->exc_traceback;
20250 exc_info->exc_type = type;
20251 exc_info->exc_value = value;
20252 exc_info->exc_traceback = tb;
20253 #else
20254 tmp_type = tstate->exc_type;
20255 tmp_value = tstate->exc_value;
20256 tmp_tb = tstate->exc_traceback;
20257 tstate->exc_type = type;
20258 tstate->exc_value = value;
20259 tstate->exc_traceback = tb;
20260 #endif
20261 Py_XDECREF(tmp_type);
20262 Py_XDECREF(tmp_value);
20263 Py_XDECREF(tmp_tb);
20264 }
20265 #endif
20266
20267 /* GetException */
20268 #if CYTHON_FAST_THREAD_STATE
__Pyx__GetException(PyThreadState * tstate,PyObject ** type,PyObject ** value,PyObject ** tb)20269 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb)
20270 #else
20271 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb)
20272 #endif
20273 {
20274 PyObject *local_type, *local_value, *local_tb;
20275 #if CYTHON_FAST_THREAD_STATE
20276 PyObject *tmp_type, *tmp_value, *tmp_tb;
20277 local_type = tstate->curexc_type;
20278 local_value = tstate->curexc_value;
20279 local_tb = tstate->curexc_traceback;
20280 tstate->curexc_type = 0;
20281 tstate->curexc_value = 0;
20282 tstate->curexc_traceback = 0;
20283 #else
20284 PyErr_Fetch(&local_type, &local_value, &local_tb);
20285 #endif
20286 PyErr_NormalizeException(&local_type, &local_value, &local_tb);
20287 #if CYTHON_FAST_THREAD_STATE
20288 if (unlikely(tstate->curexc_type))
20289 #else
20290 if (unlikely(PyErr_Occurred()))
20291 #endif
20292 goto bad;
20293 #if PY_MAJOR_VERSION >= 3
20294 if (local_tb) {
20295 if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
20296 goto bad;
20297 }
20298 #endif
20299 Py_XINCREF(local_tb);
20300 Py_XINCREF(local_type);
20301 Py_XINCREF(local_value);
20302 *type = local_type;
20303 *value = local_value;
20304 *tb = local_tb;
20305 #if CYTHON_FAST_THREAD_STATE
20306 #if CYTHON_USE_EXC_INFO_STACK
20307 {
20308 _PyErr_StackItem *exc_info = tstate->exc_info;
20309 tmp_type = exc_info->exc_type;
20310 tmp_value = exc_info->exc_value;
20311 tmp_tb = exc_info->exc_traceback;
20312 exc_info->exc_type = local_type;
20313 exc_info->exc_value = local_value;
20314 exc_info->exc_traceback = local_tb;
20315 }
20316 #else
20317 tmp_type = tstate->exc_type;
20318 tmp_value = tstate->exc_value;
20319 tmp_tb = tstate->exc_traceback;
20320 tstate->exc_type = local_type;
20321 tstate->exc_value = local_value;
20322 tstate->exc_traceback = local_tb;
20323 #endif
20324 Py_XDECREF(tmp_type);
20325 Py_XDECREF(tmp_value);
20326 Py_XDECREF(tmp_tb);
20327 #else
20328 PyErr_SetExcInfo(local_type, local_value, local_tb);
20329 #endif
20330 return 0;
20331 bad:
20332 *type = 0;
20333 *value = 0;
20334 *tb = 0;
20335 Py_XDECREF(local_type);
20336 Py_XDECREF(local_value);
20337 Py_XDECREF(local_tb);
20338 return -1;
20339 }
20340
20341 /* PyObject_GenericGetAttrNoDict */
20342 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
__Pyx_RaiseGenericGetAttributeError(PyTypeObject * tp,PyObject * attr_name)20343 static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) {
20344 PyErr_Format(PyExc_AttributeError,
20345 #if PY_MAJOR_VERSION >= 3
20346 "'%.50s' object has no attribute '%U'",
20347 tp->tp_name, attr_name);
20348 #else
20349 "'%.50s' object has no attribute '%.400s'",
20350 tp->tp_name, PyString_AS_STRING(attr_name));
20351 #endif
20352 return NULL;
20353 }
__Pyx_PyObject_GenericGetAttrNoDict(PyObject * obj,PyObject * attr_name)20354 static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) {
20355 PyObject *descr;
20356 PyTypeObject *tp = Py_TYPE(obj);
20357 if (unlikely(!PyString_Check(attr_name))) {
20358 return PyObject_GenericGetAttr(obj, attr_name);
20359 }
20360 assert(!tp->tp_dictoffset);
20361 descr = _PyType_Lookup(tp, attr_name);
20362 if (unlikely(!descr)) {
20363 return __Pyx_RaiseGenericGetAttributeError(tp, attr_name);
20364 }
20365 Py_INCREF(descr);
20366 #if PY_MAJOR_VERSION < 3
20367 if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS)))
20368 #endif
20369 {
20370 descrgetfunc f = Py_TYPE(descr)->tp_descr_get;
20371 if (unlikely(f)) {
20372 PyObject *res = f(descr, obj, (PyObject *)tp);
20373 Py_DECREF(descr);
20374 return res;
20375 }
20376 }
20377 return descr;
20378 }
20379 #endif
20380
20381 /* PyObject_GenericGetAttr */
20382 #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
__Pyx_PyObject_GenericGetAttr(PyObject * obj,PyObject * attr_name)20383 static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) {
20384 if (unlikely(Py_TYPE(obj)->tp_dictoffset)) {
20385 return PyObject_GenericGetAttr(obj, attr_name);
20386 }
20387 return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name);
20388 }
20389 #endif
20390
20391 /* PyObjectGetAttrStrNoError */
__Pyx_PyObject_GetAttrStr_ClearAttributeError(void)20392 static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) {
20393 __Pyx_PyThreadState_declare
20394 __Pyx_PyThreadState_assign
20395 if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
20396 __Pyx_PyErr_Clear();
20397 }
__Pyx_PyObject_GetAttrStrNoError(PyObject * obj,PyObject * attr_name)20398 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) {
20399 PyObject *result;
20400 #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1
20401 PyTypeObject* tp = Py_TYPE(obj);
20402 if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) {
20403 return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1);
20404 }
20405 #endif
20406 result = __Pyx_PyObject_GetAttrStr(obj, attr_name);
20407 if (unlikely(!result)) {
20408 __Pyx_PyObject_GetAttrStr_ClearAttributeError();
20409 }
20410 return result;
20411 }
20412
20413 /* SetupReduce */
__Pyx_setup_reduce_is_named(PyObject * meth,PyObject * name)20414 static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) {
20415 int ret;
20416 PyObject *name_attr;
20417 name_attr = __Pyx_PyObject_GetAttrStr(meth, __pyx_n_s_name);
20418 if (likely(name_attr)) {
20419 ret = PyObject_RichCompareBool(name_attr, name, Py_EQ);
20420 } else {
20421 ret = -1;
20422 }
20423 if (unlikely(ret < 0)) {
20424 PyErr_Clear();
20425 ret = 0;
20426 }
20427 Py_XDECREF(name_attr);
20428 return ret;
20429 }
__Pyx_setup_reduce(PyObject * type_obj)20430 static int __Pyx_setup_reduce(PyObject* type_obj) {
20431 int ret = 0;
20432 PyObject *object_reduce = NULL;
20433 PyObject *object_reduce_ex = NULL;
20434 PyObject *reduce = NULL;
20435 PyObject *reduce_ex = NULL;
20436 PyObject *reduce_cython = NULL;
20437 PyObject *setstate = NULL;
20438 PyObject *setstate_cython = NULL;
20439 #if CYTHON_USE_PYTYPE_LOOKUP
20440 if (_PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate)) goto __PYX_GOOD;
20441 #else
20442 if (PyObject_HasAttr(type_obj, __pyx_n_s_getstate)) goto __PYX_GOOD;
20443 #endif
20444 #if CYTHON_USE_PYTYPE_LOOKUP
20445 object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
20446 #else
20447 object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
20448 #endif
20449 reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD;
20450 if (reduce_ex == object_reduce_ex) {
20451 #if CYTHON_USE_PYTYPE_LOOKUP
20452 object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
20453 #else
20454 object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
20455 #endif
20456 reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD;
20457 if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) {
20458 reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython);
20459 if (likely(reduce_cython)) {
20460 ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
20461 ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
20462 } else if (reduce == object_reduce || PyErr_Occurred()) {
20463 goto __PYX_BAD;
20464 }
20465 setstate = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate);
20466 if (!setstate) PyErr_Clear();
20467 if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) {
20468 setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython);
20469 if (likely(setstate_cython)) {
20470 ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
20471 ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
20472 } else if (!setstate || PyErr_Occurred()) {
20473 goto __PYX_BAD;
20474 }
20475 }
20476 PyType_Modified((PyTypeObject*)type_obj);
20477 }
20478 }
20479 goto __PYX_GOOD;
20480 __PYX_BAD:
20481 if (!PyErr_Occurred())
20482 PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for %s", ((PyTypeObject*)type_obj)->tp_name);
20483 ret = -1;
20484 __PYX_GOOD:
20485 #if !CYTHON_USE_PYTYPE_LOOKUP
20486 Py_XDECREF(object_reduce);
20487 Py_XDECREF(object_reduce_ex);
20488 #endif
20489 Py_XDECREF(reduce);
20490 Py_XDECREF(reduce_ex);
20491 Py_XDECREF(reduce_cython);
20492 Py_XDECREF(setstate);
20493 Py_XDECREF(setstate_cython);
20494 return ret;
20495 }
20496
20497 /* SetVTable */
__Pyx_SetVtable(PyObject * dict,void * vtable)20498 static int __Pyx_SetVtable(PyObject *dict, void *vtable) {
20499 #if PY_VERSION_HEX >= 0x02070000
20500 PyObject *ob = PyCapsule_New(vtable, 0, 0);
20501 #else
20502 PyObject *ob = PyCObject_FromVoidPtr(vtable, 0);
20503 #endif
20504 if (!ob)
20505 goto bad;
20506 if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0)
20507 goto bad;
20508 Py_DECREF(ob);
20509 return 0;
20510 bad:
20511 Py_XDECREF(ob);
20512 return -1;
20513 }
20514
20515 /* TypeImport */
20516 #ifndef __PYX_HAVE_RT_ImportType
20517 #define __PYX_HAVE_RT_ImportType
__Pyx_ImportType(PyObject * module,const char * module_name,const char * class_name,size_t size,enum __Pyx_ImportType_CheckSize check_size)20518 static PyTypeObject *__Pyx_ImportType(PyObject *module, const char *module_name, const char *class_name,
20519 size_t size, enum __Pyx_ImportType_CheckSize check_size)
20520 {
20521 PyObject *result = 0;
20522 char warning[200];
20523 Py_ssize_t basicsize;
20524 #ifdef Py_LIMITED_API
20525 PyObject *py_basicsize;
20526 #endif
20527 result = PyObject_GetAttrString(module, class_name);
20528 if (!result)
20529 goto bad;
20530 if (!PyType_Check(result)) {
20531 PyErr_Format(PyExc_TypeError,
20532 "%.200s.%.200s is not a type object",
20533 module_name, class_name);
20534 goto bad;
20535 }
20536 #ifndef Py_LIMITED_API
20537 basicsize = ((PyTypeObject *)result)->tp_basicsize;
20538 #else
20539 py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
20540 if (!py_basicsize)
20541 goto bad;
20542 basicsize = PyLong_AsSsize_t(py_basicsize);
20543 Py_DECREF(py_basicsize);
20544 py_basicsize = 0;
20545 if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
20546 goto bad;
20547 #endif
20548 if ((size_t)basicsize < size) {
20549 PyErr_Format(PyExc_ValueError,
20550 "%.200s.%.200s size changed, may indicate binary incompatibility. "
20551 "Expected %zd from C header, got %zd from PyObject",
20552 module_name, class_name, size, basicsize);
20553 goto bad;
20554 }
20555 if (check_size == __Pyx_ImportType_CheckSize_Error && (size_t)basicsize != size) {
20556 PyErr_Format(PyExc_ValueError,
20557 "%.200s.%.200s size changed, may indicate binary incompatibility. "
20558 "Expected %zd from C header, got %zd from PyObject",
20559 module_name, class_name, size, basicsize);
20560 goto bad;
20561 }
20562 else if (check_size == __Pyx_ImportType_CheckSize_Warn && (size_t)basicsize > size) {
20563 PyOS_snprintf(warning, sizeof(warning),
20564 "%s.%s size changed, may indicate binary incompatibility. "
20565 "Expected %zd from C header, got %zd from PyObject",
20566 module_name, class_name, size, basicsize);
20567 if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
20568 }
20569 return (PyTypeObject *)result;
20570 bad:
20571 Py_XDECREF(result);
20572 return NULL;
20573 }
20574 #endif
20575
20576 /* CLineInTraceback */
20577 #ifndef CYTHON_CLINE_IN_TRACEBACK
__Pyx_CLineForTraceback(CYTHON_NCP_UNUSED PyThreadState * tstate,int c_line)20578 static int __Pyx_CLineForTraceback(CYTHON_NCP_UNUSED PyThreadState *tstate, int c_line) {
20579 PyObject *use_cline;
20580 PyObject *ptype, *pvalue, *ptraceback;
20581 #if CYTHON_COMPILING_IN_CPYTHON
20582 PyObject **cython_runtime_dict;
20583 #endif
20584 if (unlikely(!__pyx_cython_runtime)) {
20585 return c_line;
20586 }
20587 __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
20588 #if CYTHON_COMPILING_IN_CPYTHON
20589 cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime);
20590 if (likely(cython_runtime_dict)) {
20591 __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
20592 use_cline, *cython_runtime_dict,
20593 __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback))
20594 } else
20595 #endif
20596 {
20597 PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback);
20598 if (use_cline_obj) {
20599 use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True;
20600 Py_DECREF(use_cline_obj);
20601 } else {
20602 PyErr_Clear();
20603 use_cline = NULL;
20604 }
20605 }
20606 if (!use_cline) {
20607 c_line = 0;
20608 (void) PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False);
20609 }
20610 else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) {
20611 c_line = 0;
20612 }
20613 __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
20614 return c_line;
20615 }
20616 #endif
20617
20618 /* CodeObjectCache */
__pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry * entries,int count,int code_line)20619 static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
20620 int start = 0, mid = 0, end = count - 1;
20621 if (end >= 0 && code_line > entries[end].code_line) {
20622 return count;
20623 }
20624 while (start < end) {
20625 mid = start + (end - start) / 2;
20626 if (code_line < entries[mid].code_line) {
20627 end = mid;
20628 } else if (code_line > entries[mid].code_line) {
20629 start = mid + 1;
20630 } else {
20631 return mid;
20632 }
20633 }
20634 if (code_line <= entries[mid].code_line) {
20635 return mid;
20636 } else {
20637 return mid + 1;
20638 }
20639 }
__pyx_find_code_object(int code_line)20640 static PyCodeObject *__pyx_find_code_object(int code_line) {
20641 PyCodeObject* code_object;
20642 int pos;
20643 if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
20644 return NULL;
20645 }
20646 pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
20647 if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
20648 return NULL;
20649 }
20650 code_object = __pyx_code_cache.entries[pos].code_object;
20651 Py_INCREF(code_object);
20652 return code_object;
20653 }
__pyx_insert_code_object(int code_line,PyCodeObject * code_object)20654 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
20655 int pos, i;
20656 __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
20657 if (unlikely(!code_line)) {
20658 return;
20659 }
20660 if (unlikely(!entries)) {
20661 entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
20662 if (likely(entries)) {
20663 __pyx_code_cache.entries = entries;
20664 __pyx_code_cache.max_count = 64;
20665 __pyx_code_cache.count = 1;
20666 entries[0].code_line = code_line;
20667 entries[0].code_object = code_object;
20668 Py_INCREF(code_object);
20669 }
20670 return;
20671 }
20672 pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
20673 if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
20674 PyCodeObject* tmp = entries[pos].code_object;
20675 entries[pos].code_object = code_object;
20676 Py_DECREF(tmp);
20677 return;
20678 }
20679 if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
20680 int new_max = __pyx_code_cache.max_count + 64;
20681 entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
20682 __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry));
20683 if (unlikely(!entries)) {
20684 return;
20685 }
20686 __pyx_code_cache.entries = entries;
20687 __pyx_code_cache.max_count = new_max;
20688 }
20689 for (i=__pyx_code_cache.count; i>pos; i--) {
20690 entries[i] = entries[i-1];
20691 }
20692 entries[pos].code_line = code_line;
20693 entries[pos].code_object = code_object;
20694 __pyx_code_cache.count++;
20695 Py_INCREF(code_object);
20696 }
20697
20698 /* AddTraceback */
20699 #include "compile.h"
20700 #include "frameobject.h"
20701 #include "traceback.h"
__Pyx_CreateCodeObjectForTraceback(const char * funcname,int c_line,int py_line,const char * filename)20702 static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
20703 const char *funcname, int c_line,
20704 int py_line, const char *filename) {
20705 PyCodeObject *py_code = NULL;
20706 PyObject *py_funcname = NULL;
20707 #if PY_MAJOR_VERSION < 3
20708 PyObject *py_srcfile = NULL;
20709 py_srcfile = PyString_FromString(filename);
20710 if (!py_srcfile) goto bad;
20711 #endif
20712 if (c_line) {
20713 #if PY_MAJOR_VERSION < 3
20714 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
20715 if (!py_funcname) goto bad;
20716 #else
20717 py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
20718 if (!py_funcname) goto bad;
20719 funcname = PyUnicode_AsUTF8(py_funcname);
20720 if (!funcname) goto bad;
20721 #endif
20722 }
20723 else {
20724 #if PY_MAJOR_VERSION < 3
20725 py_funcname = PyString_FromString(funcname);
20726 if (!py_funcname) goto bad;
20727 #endif
20728 }
20729 #if PY_MAJOR_VERSION < 3
20730 py_code = __Pyx_PyCode_New(
20731 0,
20732 0,
20733 0,
20734 0,
20735 0,
20736 __pyx_empty_bytes, /*PyObject *code,*/
20737 __pyx_empty_tuple, /*PyObject *consts,*/
20738 __pyx_empty_tuple, /*PyObject *names,*/
20739 __pyx_empty_tuple, /*PyObject *varnames,*/
20740 __pyx_empty_tuple, /*PyObject *freevars,*/
20741 __pyx_empty_tuple, /*PyObject *cellvars,*/
20742 py_srcfile, /*PyObject *filename,*/
20743 py_funcname, /*PyObject *name,*/
20744 py_line,
20745 __pyx_empty_bytes /*PyObject *lnotab*/
20746 );
20747 Py_DECREF(py_srcfile);
20748 #else
20749 py_code = PyCode_NewEmpty(filename, funcname, py_line);
20750 #endif
20751 Py_XDECREF(py_funcname); // XDECREF since it's only set on Py3 if cline
20752 return py_code;
20753 bad:
20754 Py_XDECREF(py_funcname);
20755 #if PY_MAJOR_VERSION < 3
20756 Py_XDECREF(py_srcfile);
20757 #endif
20758 return NULL;
20759 }
__Pyx_AddTraceback(const char * funcname,int c_line,int py_line,const char * filename)20760 static void __Pyx_AddTraceback(const char *funcname, int c_line,
20761 int py_line, const char *filename) {
20762 PyCodeObject *py_code = 0;
20763 PyFrameObject *py_frame = 0;
20764 PyThreadState *tstate = __Pyx_PyThreadState_Current;
20765 if (c_line) {
20766 c_line = __Pyx_CLineForTraceback(tstate, c_line);
20767 }
20768 py_code = __pyx_find_code_object(c_line ? -c_line : py_line);
20769 if (!py_code) {
20770 py_code = __Pyx_CreateCodeObjectForTraceback(
20771 funcname, c_line, py_line, filename);
20772 if (!py_code) goto bad;
20773 __pyx_insert_code_object(c_line ? -c_line : py_line, py_code);
20774 }
20775 py_frame = PyFrame_New(
20776 tstate, /*PyThreadState *tstate,*/
20777 py_code, /*PyCodeObject *code,*/
20778 __pyx_d, /*PyObject *globals,*/
20779 0 /*PyObject *locals*/
20780 );
20781 if (!py_frame) goto bad;
20782 __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
20783 PyTraceBack_Here(py_frame);
20784 bad:
20785 Py_XDECREF(py_code);
20786 Py_XDECREF(py_frame);
20787 }
20788
20789 /* CIntFromPyVerify */
20790 #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
20791 __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
20792 #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
20793 __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
20794 #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
20795 {\
20796 func_type value = func_value;\
20797 if (sizeof(target_type) < sizeof(func_type)) {\
20798 if (unlikely(value != (func_type) (target_type) value)) {\
20799 func_type zero = 0;\
20800 if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
20801 return (target_type) -1;\
20802 if (is_unsigned && unlikely(value < zero))\
20803 goto raise_neg_overflow;\
20804 else\
20805 goto raise_overflow;\
20806 }\
20807 }\
20808 return (target_type) value;\
20809 }
20810
20811 #if PY_MAJOR_VERSION < 3
__Pyx_GetBuffer(PyObject * obj,Py_buffer * view,int flags)20812 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) {
20813 if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags);
20814 PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name);
20815 return -1;
20816 }
__Pyx_ReleaseBuffer(Py_buffer * view)20817 static void __Pyx_ReleaseBuffer(Py_buffer *view) {
20818 PyObject *obj = view->obj;
20819 if (!obj) return;
20820 if (PyObject_CheckBuffer(obj)) {
20821 PyBuffer_Release(view);
20822 return;
20823 }
20824 if ((0)) {}
20825 view->obj = NULL;
20826 Py_DECREF(obj);
20827 }
20828 #endif
20829
20830
20831 /* Declarations */
20832 #if CYTHON_CCOMPLEX
20833 #ifdef __cplusplus
__pyx_t_float_complex_from_parts(float x,float y)20834 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
20835 return ::std::complex< float >(x, y);
20836 }
20837 #else
__pyx_t_float_complex_from_parts(float x,float y)20838 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
20839 return x + y*(__pyx_t_float_complex)_Complex_I;
20840 }
20841 #endif
20842 #else
__pyx_t_float_complex_from_parts(float x,float y)20843 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
20844 __pyx_t_float_complex z;
20845 z.real = x;
20846 z.imag = y;
20847 return z;
20848 }
20849 #endif
20850
20851 /* Arithmetic */
20852 #if CYTHON_CCOMPLEX
20853 #else
__Pyx_c_eq_float(__pyx_t_float_complex a,__pyx_t_float_complex b)20854 static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
20855 return (a.real == b.real) && (a.imag == b.imag);
20856 }
__Pyx_c_sum_float(__pyx_t_float_complex a,__pyx_t_float_complex b)20857 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
20858 __pyx_t_float_complex z;
20859 z.real = a.real + b.real;
20860 z.imag = a.imag + b.imag;
20861 return z;
20862 }
__Pyx_c_diff_float(__pyx_t_float_complex a,__pyx_t_float_complex b)20863 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
20864 __pyx_t_float_complex z;
20865 z.real = a.real - b.real;
20866 z.imag = a.imag - b.imag;
20867 return z;
20868 }
__Pyx_c_prod_float(__pyx_t_float_complex a,__pyx_t_float_complex b)20869 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
20870 __pyx_t_float_complex z;
20871 z.real = a.real * b.real - a.imag * b.imag;
20872 z.imag = a.real * b.imag + a.imag * b.real;
20873 return z;
20874 }
20875 #if 1
__Pyx_c_quot_float(__pyx_t_float_complex a,__pyx_t_float_complex b)20876 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
20877 if (b.imag == 0) {
20878 return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
20879 } else if (fabsf(b.real) >= fabsf(b.imag)) {
20880 if (b.real == 0 && b.imag == 0) {
20881 return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag);
20882 } else {
20883 float r = b.imag / b.real;
20884 float s = (float)(1.0) / (b.real + b.imag * r);
20885 return __pyx_t_float_complex_from_parts(
20886 (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
20887 }
20888 } else {
20889 float r = b.real / b.imag;
20890 float s = (float)(1.0) / (b.imag + b.real * r);
20891 return __pyx_t_float_complex_from_parts(
20892 (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
20893 }
20894 }
20895 #else
__Pyx_c_quot_float(__pyx_t_float_complex a,__pyx_t_float_complex b)20896 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
20897 if (b.imag == 0) {
20898 return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
20899 } else {
20900 float denom = b.real * b.real + b.imag * b.imag;
20901 return __pyx_t_float_complex_from_parts(
20902 (a.real * b.real + a.imag * b.imag) / denom,
20903 (a.imag * b.real - a.real * b.imag) / denom);
20904 }
20905 }
20906 #endif
__Pyx_c_neg_float(__pyx_t_float_complex a)20907 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) {
20908 __pyx_t_float_complex z;
20909 z.real = -a.real;
20910 z.imag = -a.imag;
20911 return z;
20912 }
__Pyx_c_is_zero_float(__pyx_t_float_complex a)20913 static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) {
20914 return (a.real == 0) && (a.imag == 0);
20915 }
__Pyx_c_conj_float(__pyx_t_float_complex a)20916 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) {
20917 __pyx_t_float_complex z;
20918 z.real = a.real;
20919 z.imag = -a.imag;
20920 return z;
20921 }
20922 #if 1
__Pyx_c_abs_float(__pyx_t_float_complex z)20923 static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) {
20924 #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
20925 return sqrtf(z.real*z.real + z.imag*z.imag);
20926 #else
20927 return hypotf(z.real, z.imag);
20928 #endif
20929 }
__Pyx_c_pow_float(__pyx_t_float_complex a,__pyx_t_float_complex b)20930 static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
20931 __pyx_t_float_complex z;
20932 float r, lnr, theta, z_r, z_theta;
20933 if (b.imag == 0 && b.real == (int)b.real) {
20934 if (b.real < 0) {
20935 float denom = a.real * a.real + a.imag * a.imag;
20936 a.real = a.real / denom;
20937 a.imag = -a.imag / denom;
20938 b.real = -b.real;
20939 }
20940 switch ((int)b.real) {
20941 case 0:
20942 z.real = 1;
20943 z.imag = 0;
20944 return z;
20945 case 1:
20946 return a;
20947 case 2:
20948 return __Pyx_c_prod_float(a, a);
20949 case 3:
20950 z = __Pyx_c_prod_float(a, a);
20951 return __Pyx_c_prod_float(z, a);
20952 case 4:
20953 z = __Pyx_c_prod_float(a, a);
20954 return __Pyx_c_prod_float(z, z);
20955 }
20956 }
20957 if (a.imag == 0) {
20958 if (a.real == 0) {
20959 return a;
20960 } else if (b.imag == 0) {
20961 z.real = powf(a.real, b.real);
20962 z.imag = 0;
20963 return z;
20964 } else if (a.real > 0) {
20965 r = a.real;
20966 theta = 0;
20967 } else {
20968 r = -a.real;
20969 theta = atan2f(0.0, -1.0);
20970 }
20971 } else {
20972 r = __Pyx_c_abs_float(a);
20973 theta = atan2f(a.imag, a.real);
20974 }
20975 lnr = logf(r);
20976 z_r = expf(lnr * b.real - theta * b.imag);
20977 z_theta = theta * b.real + lnr * b.imag;
20978 z.real = z_r * cosf(z_theta);
20979 z.imag = z_r * sinf(z_theta);
20980 return z;
20981 }
20982 #endif
20983 #endif
20984
20985 /* Declarations */
20986 #if CYTHON_CCOMPLEX
20987 #ifdef __cplusplus
__pyx_t_double_complex_from_parts(double x,double y)20988 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
20989 return ::std::complex< double >(x, y);
20990 }
20991 #else
__pyx_t_double_complex_from_parts(double x,double y)20992 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
20993 return x + y*(__pyx_t_double_complex)_Complex_I;
20994 }
20995 #endif
20996 #else
__pyx_t_double_complex_from_parts(double x,double y)20997 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
20998 __pyx_t_double_complex z;
20999 z.real = x;
21000 z.imag = y;
21001 return z;
21002 }
21003 #endif
21004
21005 /* Arithmetic */
21006 #if CYTHON_CCOMPLEX
21007 #else
__Pyx_c_eq_double(__pyx_t_double_complex a,__pyx_t_double_complex b)21008 static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
21009 return (a.real == b.real) && (a.imag == b.imag);
21010 }
__Pyx_c_sum_double(__pyx_t_double_complex a,__pyx_t_double_complex b)21011 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
21012 __pyx_t_double_complex z;
21013 z.real = a.real + b.real;
21014 z.imag = a.imag + b.imag;
21015 return z;
21016 }
__Pyx_c_diff_double(__pyx_t_double_complex a,__pyx_t_double_complex b)21017 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
21018 __pyx_t_double_complex z;
21019 z.real = a.real - b.real;
21020 z.imag = a.imag - b.imag;
21021 return z;
21022 }
__Pyx_c_prod_double(__pyx_t_double_complex a,__pyx_t_double_complex b)21023 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
21024 __pyx_t_double_complex z;
21025 z.real = a.real * b.real - a.imag * b.imag;
21026 z.imag = a.real * b.imag + a.imag * b.real;
21027 return z;
21028 }
21029 #if 1
__Pyx_c_quot_double(__pyx_t_double_complex a,__pyx_t_double_complex b)21030 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
21031 if (b.imag == 0) {
21032 return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
21033 } else if (fabs(b.real) >= fabs(b.imag)) {
21034 if (b.real == 0 && b.imag == 0) {
21035 return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag);
21036 } else {
21037 double r = b.imag / b.real;
21038 double s = (double)(1.0) / (b.real + b.imag * r);
21039 return __pyx_t_double_complex_from_parts(
21040 (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
21041 }
21042 } else {
21043 double r = b.real / b.imag;
21044 double s = (double)(1.0) / (b.imag + b.real * r);
21045 return __pyx_t_double_complex_from_parts(
21046 (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
21047 }
21048 }
21049 #else
__Pyx_c_quot_double(__pyx_t_double_complex a,__pyx_t_double_complex b)21050 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
21051 if (b.imag == 0) {
21052 return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
21053 } else {
21054 double denom = b.real * b.real + b.imag * b.imag;
21055 return __pyx_t_double_complex_from_parts(
21056 (a.real * b.real + a.imag * b.imag) / denom,
21057 (a.imag * b.real - a.real * b.imag) / denom);
21058 }
21059 }
21060 #endif
__Pyx_c_neg_double(__pyx_t_double_complex a)21061 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) {
21062 __pyx_t_double_complex z;
21063 z.real = -a.real;
21064 z.imag = -a.imag;
21065 return z;
21066 }
__Pyx_c_is_zero_double(__pyx_t_double_complex a)21067 static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) {
21068 return (a.real == 0) && (a.imag == 0);
21069 }
__Pyx_c_conj_double(__pyx_t_double_complex a)21070 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) {
21071 __pyx_t_double_complex z;
21072 z.real = a.real;
21073 z.imag = -a.imag;
21074 return z;
21075 }
21076 #if 1
__Pyx_c_abs_double(__pyx_t_double_complex z)21077 static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) {
21078 #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
21079 return sqrt(z.real*z.real + z.imag*z.imag);
21080 #else
21081 return hypot(z.real, z.imag);
21082 #endif
21083 }
__Pyx_c_pow_double(__pyx_t_double_complex a,__pyx_t_double_complex b)21084 static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
21085 __pyx_t_double_complex z;
21086 double r, lnr, theta, z_r, z_theta;
21087 if (b.imag == 0 && b.real == (int)b.real) {
21088 if (b.real < 0) {
21089 double denom = a.real * a.real + a.imag * a.imag;
21090 a.real = a.real / denom;
21091 a.imag = -a.imag / denom;
21092 b.real = -b.real;
21093 }
21094 switch ((int)b.real) {
21095 case 0:
21096 z.real = 1;
21097 z.imag = 0;
21098 return z;
21099 case 1:
21100 return a;
21101 case 2:
21102 return __Pyx_c_prod_double(a, a);
21103 case 3:
21104 z = __Pyx_c_prod_double(a, a);
21105 return __Pyx_c_prod_double(z, a);
21106 case 4:
21107 z = __Pyx_c_prod_double(a, a);
21108 return __Pyx_c_prod_double(z, z);
21109 }
21110 }
21111 if (a.imag == 0) {
21112 if (a.real == 0) {
21113 return a;
21114 } else if (b.imag == 0) {
21115 z.real = pow(a.real, b.real);
21116 z.imag = 0;
21117 return z;
21118 } else if (a.real > 0) {
21119 r = a.real;
21120 theta = 0;
21121 } else {
21122 r = -a.real;
21123 theta = atan2(0.0, -1.0);
21124 }
21125 } else {
21126 r = __Pyx_c_abs_double(a);
21127 theta = atan2(a.imag, a.real);
21128 }
21129 lnr = log(r);
21130 z_r = exp(lnr * b.real - theta * b.imag);
21131 z_theta = theta * b.real + lnr * b.imag;
21132 z.real = z_r * cos(z_theta);
21133 z.imag = z_r * sin(z_theta);
21134 return z;
21135 }
21136 #endif
21137 #endif
21138
21139 /* CIntToPy */
__Pyx_PyInt_From_unsigned_int(unsigned int value)21140 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_int(unsigned int value) {
21141 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21142 #pragma GCC diagnostic push
21143 #pragma GCC diagnostic ignored "-Wconversion"
21144 #endif
21145 const unsigned int neg_one = (unsigned int) -1, const_zero = (unsigned int) 0;
21146 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21147 #pragma GCC diagnostic pop
21148 #endif
21149 const int is_unsigned = neg_one > const_zero;
21150 if (is_unsigned) {
21151 if (sizeof(unsigned int) < sizeof(long)) {
21152 return PyInt_FromLong((long) value);
21153 } else if (sizeof(unsigned int) <= sizeof(unsigned long)) {
21154 return PyLong_FromUnsignedLong((unsigned long) value);
21155 #ifdef HAVE_LONG_LONG
21156 } else if (sizeof(unsigned int) <= sizeof(unsigned PY_LONG_LONG)) {
21157 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
21158 #endif
21159 }
21160 } else {
21161 if (sizeof(unsigned int) <= sizeof(long)) {
21162 return PyInt_FromLong((long) value);
21163 #ifdef HAVE_LONG_LONG
21164 } else if (sizeof(unsigned int) <= sizeof(PY_LONG_LONG)) {
21165 return PyLong_FromLongLong((PY_LONG_LONG) value);
21166 #endif
21167 }
21168 }
21169 {
21170 int one = 1; int little = (int)*(unsigned char *)&one;
21171 unsigned char *bytes = (unsigned char *)&value;
21172 return _PyLong_FromByteArray(bytes, sizeof(unsigned int),
21173 little, !is_unsigned);
21174 }
21175 }
21176
21177 /* CIntFromPy */
__Pyx_PyInt_As_unsigned_int(PyObject * x)21178 static CYTHON_INLINE unsigned int __Pyx_PyInt_As_unsigned_int(PyObject *x) {
21179 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21180 #pragma GCC diagnostic push
21181 #pragma GCC diagnostic ignored "-Wconversion"
21182 #endif
21183 const unsigned int neg_one = (unsigned int) -1, const_zero = (unsigned int) 0;
21184 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21185 #pragma GCC diagnostic pop
21186 #endif
21187 const int is_unsigned = neg_one > const_zero;
21188 #if PY_MAJOR_VERSION < 3
21189 if (likely(PyInt_Check(x))) {
21190 if (sizeof(unsigned int) < sizeof(long)) {
21191 __PYX_VERIFY_RETURN_INT(unsigned int, long, PyInt_AS_LONG(x))
21192 } else {
21193 long val = PyInt_AS_LONG(x);
21194 if (is_unsigned && unlikely(val < 0)) {
21195 goto raise_neg_overflow;
21196 }
21197 return (unsigned int) val;
21198 }
21199 } else
21200 #endif
21201 if (likely(PyLong_Check(x))) {
21202 if (is_unsigned) {
21203 #if CYTHON_USE_PYLONG_INTERNALS
21204 const digit* digits = ((PyLongObject*)x)->ob_digit;
21205 switch (Py_SIZE(x)) {
21206 case 0: return (unsigned int) 0;
21207 case 1: __PYX_VERIFY_RETURN_INT(unsigned int, digit, digits[0])
21208 case 2:
21209 if (8 * sizeof(unsigned int) > 1 * PyLong_SHIFT) {
21210 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21211 __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21212 } else if (8 * sizeof(unsigned int) >= 2 * PyLong_SHIFT) {
21213 return (unsigned int) (((((unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]));
21214 }
21215 }
21216 break;
21217 case 3:
21218 if (8 * sizeof(unsigned int) > 2 * PyLong_SHIFT) {
21219 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21220 __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21221 } else if (8 * sizeof(unsigned int) >= 3 * PyLong_SHIFT) {
21222 return (unsigned int) (((((((unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]));
21223 }
21224 }
21225 break;
21226 case 4:
21227 if (8 * sizeof(unsigned int) > 3 * PyLong_SHIFT) {
21228 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21229 __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21230 } else if (8 * sizeof(unsigned int) >= 4 * PyLong_SHIFT) {
21231 return (unsigned int) (((((((((unsigned int)digits[3]) << PyLong_SHIFT) | (unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0]));
21232 }
21233 }
21234 break;
21235 }
21236 #endif
21237 #if CYTHON_COMPILING_IN_CPYTHON
21238 if (unlikely(Py_SIZE(x) < 0)) {
21239 goto raise_neg_overflow;
21240 }
21241 #else
21242 {
21243 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
21244 if (unlikely(result < 0))
21245 return (unsigned int) -1;
21246 if (unlikely(result == 1))
21247 goto raise_neg_overflow;
21248 }
21249 #endif
21250 if (sizeof(unsigned int) <= sizeof(unsigned long)) {
21251 __PYX_VERIFY_RETURN_INT_EXC(unsigned int, unsigned long, PyLong_AsUnsignedLong(x))
21252 #ifdef HAVE_LONG_LONG
21253 } else if (sizeof(unsigned int) <= sizeof(unsigned PY_LONG_LONG)) {
21254 __PYX_VERIFY_RETURN_INT_EXC(unsigned int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
21255 #endif
21256 }
21257 } else {
21258 #if CYTHON_USE_PYLONG_INTERNALS
21259 const digit* digits = ((PyLongObject*)x)->ob_digit;
21260 switch (Py_SIZE(x)) {
21261 case 0: return (unsigned int) 0;
21262 case -1: __PYX_VERIFY_RETURN_INT(unsigned int, sdigit, (sdigit) (-(sdigit)digits[0]))
21263 case 1: __PYX_VERIFY_RETURN_INT(unsigned int, digit, +digits[0])
21264 case -2:
21265 if (8 * sizeof(unsigned int) - 1 > 1 * PyLong_SHIFT) {
21266 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21267 __PYX_VERIFY_RETURN_INT(unsigned int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21268 } else if (8 * sizeof(unsigned int) - 1 > 2 * PyLong_SHIFT) {
21269 return (unsigned int) (((unsigned int)-1)*(((((unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])));
21270 }
21271 }
21272 break;
21273 case 2:
21274 if (8 * sizeof(unsigned int) > 1 * PyLong_SHIFT) {
21275 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21276 __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21277 } else if (8 * sizeof(unsigned int) - 1 > 2 * PyLong_SHIFT) {
21278 return (unsigned int) ((((((unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])));
21279 }
21280 }
21281 break;
21282 case -3:
21283 if (8 * sizeof(unsigned int) - 1 > 2 * PyLong_SHIFT) {
21284 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21285 __PYX_VERIFY_RETURN_INT(unsigned int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21286 } else if (8 * sizeof(unsigned int) - 1 > 3 * PyLong_SHIFT) {
21287 return (unsigned int) (((unsigned int)-1)*(((((((unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])));
21288 }
21289 }
21290 break;
21291 case 3:
21292 if (8 * sizeof(unsigned int) > 2 * PyLong_SHIFT) {
21293 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21294 __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21295 } else if (8 * sizeof(unsigned int) - 1 > 3 * PyLong_SHIFT) {
21296 return (unsigned int) ((((((((unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])));
21297 }
21298 }
21299 break;
21300 case -4:
21301 if (8 * sizeof(unsigned int) - 1 > 3 * PyLong_SHIFT) {
21302 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21303 __PYX_VERIFY_RETURN_INT(unsigned int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21304 } else if (8 * sizeof(unsigned int) - 1 > 4 * PyLong_SHIFT) {
21305 return (unsigned int) (((unsigned int)-1)*(((((((((unsigned int)digits[3]) << PyLong_SHIFT) | (unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])));
21306 }
21307 }
21308 break;
21309 case 4:
21310 if (8 * sizeof(unsigned int) > 3 * PyLong_SHIFT) {
21311 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21312 __PYX_VERIFY_RETURN_INT(unsigned int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21313 } else if (8 * sizeof(unsigned int) - 1 > 4 * PyLong_SHIFT) {
21314 return (unsigned int) ((((((((((unsigned int)digits[3]) << PyLong_SHIFT) | (unsigned int)digits[2]) << PyLong_SHIFT) | (unsigned int)digits[1]) << PyLong_SHIFT) | (unsigned int)digits[0])));
21315 }
21316 }
21317 break;
21318 }
21319 #endif
21320 if (sizeof(unsigned int) <= sizeof(long)) {
21321 __PYX_VERIFY_RETURN_INT_EXC(unsigned int, long, PyLong_AsLong(x))
21322 #ifdef HAVE_LONG_LONG
21323 } else if (sizeof(unsigned int) <= sizeof(PY_LONG_LONG)) {
21324 __PYX_VERIFY_RETURN_INT_EXC(unsigned int, PY_LONG_LONG, PyLong_AsLongLong(x))
21325 #endif
21326 }
21327 }
21328 {
21329 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
21330 PyErr_SetString(PyExc_RuntimeError,
21331 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
21332 #else
21333 unsigned int val;
21334 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
21335 #if PY_MAJOR_VERSION < 3
21336 if (likely(v) && !PyLong_Check(v)) {
21337 PyObject *tmp = v;
21338 v = PyNumber_Long(tmp);
21339 Py_DECREF(tmp);
21340 }
21341 #endif
21342 if (likely(v)) {
21343 int one = 1; int is_little = (int)*(unsigned char *)&one;
21344 unsigned char *bytes = (unsigned char *)&val;
21345 int ret = _PyLong_AsByteArray((PyLongObject *)v,
21346 bytes, sizeof(val),
21347 is_little, !is_unsigned);
21348 Py_DECREF(v);
21349 if (likely(!ret))
21350 return val;
21351 }
21352 #endif
21353 return (unsigned int) -1;
21354 }
21355 } else {
21356 unsigned int val;
21357 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
21358 if (!tmp) return (unsigned int) -1;
21359 val = __Pyx_PyInt_As_unsigned_int(tmp);
21360 Py_DECREF(tmp);
21361 return val;
21362 }
21363 raise_overflow:
21364 PyErr_SetString(PyExc_OverflowError,
21365 "value too large to convert to unsigned int");
21366 return (unsigned int) -1;
21367 raise_neg_overflow:
21368 PyErr_SetString(PyExc_OverflowError,
21369 "can't convert negative value to unsigned int");
21370 return (unsigned int) -1;
21371 }
21372
21373 /* CIntToPy */
__Pyx_PyInt_From_int(int value)21374 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
21375 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21376 #pragma GCC diagnostic push
21377 #pragma GCC diagnostic ignored "-Wconversion"
21378 #endif
21379 const int neg_one = (int) -1, const_zero = (int) 0;
21380 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21381 #pragma GCC diagnostic pop
21382 #endif
21383 const int is_unsigned = neg_one > const_zero;
21384 if (is_unsigned) {
21385 if (sizeof(int) < sizeof(long)) {
21386 return PyInt_FromLong((long) value);
21387 } else if (sizeof(int) <= sizeof(unsigned long)) {
21388 return PyLong_FromUnsignedLong((unsigned long) value);
21389 #ifdef HAVE_LONG_LONG
21390 } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
21391 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
21392 #endif
21393 }
21394 } else {
21395 if (sizeof(int) <= sizeof(long)) {
21396 return PyInt_FromLong((long) value);
21397 #ifdef HAVE_LONG_LONG
21398 } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
21399 return PyLong_FromLongLong((PY_LONG_LONG) value);
21400 #endif
21401 }
21402 }
21403 {
21404 int one = 1; int little = (int)*(unsigned char *)&one;
21405 unsigned char *bytes = (unsigned char *)&value;
21406 return _PyLong_FromByteArray(bytes, sizeof(int),
21407 little, !is_unsigned);
21408 }
21409 }
21410
21411 /* CIntFromPy */
__Pyx_PyInt_As_int(PyObject * x)21412 static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
21413 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21414 #pragma GCC diagnostic push
21415 #pragma GCC diagnostic ignored "-Wconversion"
21416 #endif
21417 const int neg_one = (int) -1, const_zero = (int) 0;
21418 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21419 #pragma GCC diagnostic pop
21420 #endif
21421 const int is_unsigned = neg_one > const_zero;
21422 #if PY_MAJOR_VERSION < 3
21423 if (likely(PyInt_Check(x))) {
21424 if (sizeof(int) < sizeof(long)) {
21425 __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
21426 } else {
21427 long val = PyInt_AS_LONG(x);
21428 if (is_unsigned && unlikely(val < 0)) {
21429 goto raise_neg_overflow;
21430 }
21431 return (int) val;
21432 }
21433 } else
21434 #endif
21435 if (likely(PyLong_Check(x))) {
21436 if (is_unsigned) {
21437 #if CYTHON_USE_PYLONG_INTERNALS
21438 const digit* digits = ((PyLongObject*)x)->ob_digit;
21439 switch (Py_SIZE(x)) {
21440 case 0: return (int) 0;
21441 case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
21442 case 2:
21443 if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
21444 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21445 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21446 } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
21447 return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
21448 }
21449 }
21450 break;
21451 case 3:
21452 if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
21453 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21454 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21455 } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
21456 return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
21457 }
21458 }
21459 break;
21460 case 4:
21461 if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
21462 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21463 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21464 } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
21465 return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
21466 }
21467 }
21468 break;
21469 }
21470 #endif
21471 #if CYTHON_COMPILING_IN_CPYTHON
21472 if (unlikely(Py_SIZE(x) < 0)) {
21473 goto raise_neg_overflow;
21474 }
21475 #else
21476 {
21477 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
21478 if (unlikely(result < 0))
21479 return (int) -1;
21480 if (unlikely(result == 1))
21481 goto raise_neg_overflow;
21482 }
21483 #endif
21484 if (sizeof(int) <= sizeof(unsigned long)) {
21485 __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
21486 #ifdef HAVE_LONG_LONG
21487 } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
21488 __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
21489 #endif
21490 }
21491 } else {
21492 #if CYTHON_USE_PYLONG_INTERNALS
21493 const digit* digits = ((PyLongObject*)x)->ob_digit;
21494 switch (Py_SIZE(x)) {
21495 case 0: return (int) 0;
21496 case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
21497 case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0])
21498 case -2:
21499 if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
21500 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21501 __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21502 } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
21503 return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
21504 }
21505 }
21506 break;
21507 case 2:
21508 if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
21509 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21510 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21511 } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
21512 return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
21513 }
21514 }
21515 break;
21516 case -3:
21517 if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
21518 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21519 __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21520 } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
21521 return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
21522 }
21523 }
21524 break;
21525 case 3:
21526 if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
21527 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21528 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21529 } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
21530 return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
21531 }
21532 }
21533 break;
21534 case -4:
21535 if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
21536 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21537 __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21538 } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
21539 return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
21540 }
21541 }
21542 break;
21543 case 4:
21544 if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
21545 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21546 __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21547 } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
21548 return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
21549 }
21550 }
21551 break;
21552 }
21553 #endif
21554 if (sizeof(int) <= sizeof(long)) {
21555 __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
21556 #ifdef HAVE_LONG_LONG
21557 } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
21558 __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
21559 #endif
21560 }
21561 }
21562 {
21563 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
21564 PyErr_SetString(PyExc_RuntimeError,
21565 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
21566 #else
21567 int val;
21568 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
21569 #if PY_MAJOR_VERSION < 3
21570 if (likely(v) && !PyLong_Check(v)) {
21571 PyObject *tmp = v;
21572 v = PyNumber_Long(tmp);
21573 Py_DECREF(tmp);
21574 }
21575 #endif
21576 if (likely(v)) {
21577 int one = 1; int is_little = (int)*(unsigned char *)&one;
21578 unsigned char *bytes = (unsigned char *)&val;
21579 int ret = _PyLong_AsByteArray((PyLongObject *)v,
21580 bytes, sizeof(val),
21581 is_little, !is_unsigned);
21582 Py_DECREF(v);
21583 if (likely(!ret))
21584 return val;
21585 }
21586 #endif
21587 return (int) -1;
21588 }
21589 } else {
21590 int val;
21591 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
21592 if (!tmp) return (int) -1;
21593 val = __Pyx_PyInt_As_int(tmp);
21594 Py_DECREF(tmp);
21595 return val;
21596 }
21597 raise_overflow:
21598 PyErr_SetString(PyExc_OverflowError,
21599 "value too large to convert to int");
21600 return (int) -1;
21601 raise_neg_overflow:
21602 PyErr_SetString(PyExc_OverflowError,
21603 "can't convert negative value to int");
21604 return (int) -1;
21605 }
21606
21607 /* CIntToPy */
__Pyx_PyInt_From_unsigned_PY_LONG_LONG(unsigned PY_LONG_LONG value)21608 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_PY_LONG_LONG(unsigned PY_LONG_LONG value) {
21609 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21610 #pragma GCC diagnostic push
21611 #pragma GCC diagnostic ignored "-Wconversion"
21612 #endif
21613 const unsigned PY_LONG_LONG neg_one = (unsigned PY_LONG_LONG) -1, const_zero = (unsigned PY_LONG_LONG) 0;
21614 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21615 #pragma GCC diagnostic pop
21616 #endif
21617 const int is_unsigned = neg_one > const_zero;
21618 if (is_unsigned) {
21619 if (sizeof(unsigned PY_LONG_LONG) < sizeof(long)) {
21620 return PyInt_FromLong((long) value);
21621 } else if (sizeof(unsigned PY_LONG_LONG) <= sizeof(unsigned long)) {
21622 return PyLong_FromUnsignedLong((unsigned long) value);
21623 #ifdef HAVE_LONG_LONG
21624 } else if (sizeof(unsigned PY_LONG_LONG) <= sizeof(unsigned PY_LONG_LONG)) {
21625 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
21626 #endif
21627 }
21628 } else {
21629 if (sizeof(unsigned PY_LONG_LONG) <= sizeof(long)) {
21630 return PyInt_FromLong((long) value);
21631 #ifdef HAVE_LONG_LONG
21632 } else if (sizeof(unsigned PY_LONG_LONG) <= sizeof(PY_LONG_LONG)) {
21633 return PyLong_FromLongLong((PY_LONG_LONG) value);
21634 #endif
21635 }
21636 }
21637 {
21638 int one = 1; int little = (int)*(unsigned char *)&one;
21639 unsigned char *bytes = (unsigned char *)&value;
21640 return _PyLong_FromByteArray(bytes, sizeof(unsigned PY_LONG_LONG),
21641 little, !is_unsigned);
21642 }
21643 }
21644
21645 /* CIntFromPy */
__Pyx_PyInt_As_unsigned_PY_LONG_LONG(PyObject * x)21646 static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_As_unsigned_PY_LONG_LONG(PyObject *x) {
21647 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21648 #pragma GCC diagnostic push
21649 #pragma GCC diagnostic ignored "-Wconversion"
21650 #endif
21651 const unsigned PY_LONG_LONG neg_one = (unsigned PY_LONG_LONG) -1, const_zero = (unsigned PY_LONG_LONG) 0;
21652 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21653 #pragma GCC diagnostic pop
21654 #endif
21655 const int is_unsigned = neg_one > const_zero;
21656 #if PY_MAJOR_VERSION < 3
21657 if (likely(PyInt_Check(x))) {
21658 if (sizeof(unsigned PY_LONG_LONG) < sizeof(long)) {
21659 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, PyInt_AS_LONG(x))
21660 } else {
21661 long val = PyInt_AS_LONG(x);
21662 if (is_unsigned && unlikely(val < 0)) {
21663 goto raise_neg_overflow;
21664 }
21665 return (unsigned PY_LONG_LONG) val;
21666 }
21667 } else
21668 #endif
21669 if (likely(PyLong_Check(x))) {
21670 if (is_unsigned) {
21671 #if CYTHON_USE_PYLONG_INTERNALS
21672 const digit* digits = ((PyLongObject*)x)->ob_digit;
21673 switch (Py_SIZE(x)) {
21674 case 0: return (unsigned PY_LONG_LONG) 0;
21675 case 1: __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, digit, digits[0])
21676 case 2:
21677 if (8 * sizeof(unsigned PY_LONG_LONG) > 1 * PyLong_SHIFT) {
21678 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21679 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21680 } else if (8 * sizeof(unsigned PY_LONG_LONG) >= 2 * PyLong_SHIFT) {
21681 return (unsigned PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
21682 }
21683 }
21684 break;
21685 case 3:
21686 if (8 * sizeof(unsigned PY_LONG_LONG) > 2 * PyLong_SHIFT) {
21687 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21688 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21689 } else if (8 * sizeof(unsigned PY_LONG_LONG) >= 3 * PyLong_SHIFT) {
21690 return (unsigned PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
21691 }
21692 }
21693 break;
21694 case 4:
21695 if (8 * sizeof(unsigned PY_LONG_LONG) > 3 * PyLong_SHIFT) {
21696 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21697 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21698 } else if (8 * sizeof(unsigned PY_LONG_LONG) >= 4 * PyLong_SHIFT) {
21699 return (unsigned PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
21700 }
21701 }
21702 break;
21703 }
21704 #endif
21705 #if CYTHON_COMPILING_IN_CPYTHON
21706 if (unlikely(Py_SIZE(x) < 0)) {
21707 goto raise_neg_overflow;
21708 }
21709 #else
21710 {
21711 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
21712 if (unlikely(result < 0))
21713 return (unsigned PY_LONG_LONG) -1;
21714 if (unlikely(result == 1))
21715 goto raise_neg_overflow;
21716 }
21717 #endif
21718 if (sizeof(unsigned PY_LONG_LONG) <= sizeof(unsigned long)) {
21719 __PYX_VERIFY_RETURN_INT_EXC(unsigned PY_LONG_LONG, unsigned long, PyLong_AsUnsignedLong(x))
21720 #ifdef HAVE_LONG_LONG
21721 } else if (sizeof(unsigned PY_LONG_LONG) <= sizeof(unsigned PY_LONG_LONG)) {
21722 __PYX_VERIFY_RETURN_INT_EXC(unsigned PY_LONG_LONG, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
21723 #endif
21724 }
21725 } else {
21726 #if CYTHON_USE_PYLONG_INTERNALS
21727 const digit* digits = ((PyLongObject*)x)->ob_digit;
21728 switch (Py_SIZE(x)) {
21729 case 0: return (unsigned PY_LONG_LONG) 0;
21730 case -1: __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, sdigit, (sdigit) (-(sdigit)digits[0]))
21731 case 1: __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, digit, +digits[0])
21732 case -2:
21733 if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 1 * PyLong_SHIFT) {
21734 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21735 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21736 } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
21737 return (unsigned PY_LONG_LONG) (((unsigned PY_LONG_LONG)-1)*(((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])));
21738 }
21739 }
21740 break;
21741 case 2:
21742 if (8 * sizeof(unsigned PY_LONG_LONG) > 1 * PyLong_SHIFT) {
21743 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21744 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21745 } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
21746 return (unsigned PY_LONG_LONG) ((((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])));
21747 }
21748 }
21749 break;
21750 case -3:
21751 if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
21752 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21753 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21754 } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
21755 return (unsigned PY_LONG_LONG) (((unsigned PY_LONG_LONG)-1)*(((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])));
21756 }
21757 }
21758 break;
21759 case 3:
21760 if (8 * sizeof(unsigned PY_LONG_LONG) > 2 * PyLong_SHIFT) {
21761 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21762 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21763 } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
21764 return (unsigned PY_LONG_LONG) ((((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])));
21765 }
21766 }
21767 break;
21768 case -4:
21769 if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
21770 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21771 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21772 } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
21773 return (unsigned PY_LONG_LONG) (((unsigned PY_LONG_LONG)-1)*(((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])));
21774 }
21775 }
21776 break;
21777 case 4:
21778 if (8 * sizeof(unsigned PY_LONG_LONG) > 3 * PyLong_SHIFT) {
21779 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21780 __PYX_VERIFY_RETURN_INT(unsigned PY_LONG_LONG, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21781 } else if (8 * sizeof(unsigned PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
21782 return (unsigned PY_LONG_LONG) ((((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])));
21783 }
21784 }
21785 break;
21786 }
21787 #endif
21788 if (sizeof(unsigned PY_LONG_LONG) <= sizeof(long)) {
21789 __PYX_VERIFY_RETURN_INT_EXC(unsigned PY_LONG_LONG, long, PyLong_AsLong(x))
21790 #ifdef HAVE_LONG_LONG
21791 } else if (sizeof(unsigned PY_LONG_LONG) <= sizeof(PY_LONG_LONG)) {
21792 __PYX_VERIFY_RETURN_INT_EXC(unsigned PY_LONG_LONG, PY_LONG_LONG, PyLong_AsLongLong(x))
21793 #endif
21794 }
21795 }
21796 {
21797 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
21798 PyErr_SetString(PyExc_RuntimeError,
21799 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
21800 #else
21801 unsigned PY_LONG_LONG val;
21802 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
21803 #if PY_MAJOR_VERSION < 3
21804 if (likely(v) && !PyLong_Check(v)) {
21805 PyObject *tmp = v;
21806 v = PyNumber_Long(tmp);
21807 Py_DECREF(tmp);
21808 }
21809 #endif
21810 if (likely(v)) {
21811 int one = 1; int is_little = (int)*(unsigned char *)&one;
21812 unsigned char *bytes = (unsigned char *)&val;
21813 int ret = _PyLong_AsByteArray((PyLongObject *)v,
21814 bytes, sizeof(val),
21815 is_little, !is_unsigned);
21816 Py_DECREF(v);
21817 if (likely(!ret))
21818 return val;
21819 }
21820 #endif
21821 return (unsigned PY_LONG_LONG) -1;
21822 }
21823 } else {
21824 unsigned PY_LONG_LONG val;
21825 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
21826 if (!tmp) return (unsigned PY_LONG_LONG) -1;
21827 val = __Pyx_PyInt_As_unsigned_PY_LONG_LONG(tmp);
21828 Py_DECREF(tmp);
21829 return val;
21830 }
21831 raise_overflow:
21832 PyErr_SetString(PyExc_OverflowError,
21833 "value too large to convert to unsigned PY_LONG_LONG");
21834 return (unsigned PY_LONG_LONG) -1;
21835 raise_neg_overflow:
21836 PyErr_SetString(PyExc_OverflowError,
21837 "can't convert negative value to unsigned PY_LONG_LONG");
21838 return (unsigned PY_LONG_LONG) -1;
21839 }
21840
21841 /* CIntToPy */
__Pyx_PyInt_From_unsigned_short(unsigned short value)21842 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_short(unsigned short value) {
21843 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21844 #pragma GCC diagnostic push
21845 #pragma GCC diagnostic ignored "-Wconversion"
21846 #endif
21847 const unsigned short neg_one = (unsigned short) -1, const_zero = (unsigned short) 0;
21848 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21849 #pragma GCC diagnostic pop
21850 #endif
21851 const int is_unsigned = neg_one > const_zero;
21852 if (is_unsigned) {
21853 if (sizeof(unsigned short) < sizeof(long)) {
21854 return PyInt_FromLong((long) value);
21855 } else if (sizeof(unsigned short) <= sizeof(unsigned long)) {
21856 return PyLong_FromUnsignedLong((unsigned long) value);
21857 #ifdef HAVE_LONG_LONG
21858 } else if (sizeof(unsigned short) <= sizeof(unsigned PY_LONG_LONG)) {
21859 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
21860 #endif
21861 }
21862 } else {
21863 if (sizeof(unsigned short) <= sizeof(long)) {
21864 return PyInt_FromLong((long) value);
21865 #ifdef HAVE_LONG_LONG
21866 } else if (sizeof(unsigned short) <= sizeof(PY_LONG_LONG)) {
21867 return PyLong_FromLongLong((PY_LONG_LONG) value);
21868 #endif
21869 }
21870 }
21871 {
21872 int one = 1; int little = (int)*(unsigned char *)&one;
21873 unsigned char *bytes = (unsigned char *)&value;
21874 return _PyLong_FromByteArray(bytes, sizeof(unsigned short),
21875 little, !is_unsigned);
21876 }
21877 }
21878
21879 /* CIntFromPy */
__Pyx_PyInt_As_unsigned_short(PyObject * x)21880 static CYTHON_INLINE unsigned short __Pyx_PyInt_As_unsigned_short(PyObject *x) {
21881 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21882 #pragma GCC diagnostic push
21883 #pragma GCC diagnostic ignored "-Wconversion"
21884 #endif
21885 const unsigned short neg_one = (unsigned short) -1, const_zero = (unsigned short) 0;
21886 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
21887 #pragma GCC diagnostic pop
21888 #endif
21889 const int is_unsigned = neg_one > const_zero;
21890 #if PY_MAJOR_VERSION < 3
21891 if (likely(PyInt_Check(x))) {
21892 if (sizeof(unsigned short) < sizeof(long)) {
21893 __PYX_VERIFY_RETURN_INT(unsigned short, long, PyInt_AS_LONG(x))
21894 } else {
21895 long val = PyInt_AS_LONG(x);
21896 if (is_unsigned && unlikely(val < 0)) {
21897 goto raise_neg_overflow;
21898 }
21899 return (unsigned short) val;
21900 }
21901 } else
21902 #endif
21903 if (likely(PyLong_Check(x))) {
21904 if (is_unsigned) {
21905 #if CYTHON_USE_PYLONG_INTERNALS
21906 const digit* digits = ((PyLongObject*)x)->ob_digit;
21907 switch (Py_SIZE(x)) {
21908 case 0: return (unsigned short) 0;
21909 case 1: __PYX_VERIFY_RETURN_INT(unsigned short, digit, digits[0])
21910 case 2:
21911 if (8 * sizeof(unsigned short) > 1 * PyLong_SHIFT) {
21912 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21913 __PYX_VERIFY_RETURN_INT(unsigned short, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21914 } else if (8 * sizeof(unsigned short) >= 2 * PyLong_SHIFT) {
21915 return (unsigned short) (((((unsigned short)digits[1]) << PyLong_SHIFT) | (unsigned short)digits[0]));
21916 }
21917 }
21918 break;
21919 case 3:
21920 if (8 * sizeof(unsigned short) > 2 * PyLong_SHIFT) {
21921 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21922 __PYX_VERIFY_RETURN_INT(unsigned short, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21923 } else if (8 * sizeof(unsigned short) >= 3 * PyLong_SHIFT) {
21924 return (unsigned short) (((((((unsigned short)digits[2]) << PyLong_SHIFT) | (unsigned short)digits[1]) << PyLong_SHIFT) | (unsigned short)digits[0]));
21925 }
21926 }
21927 break;
21928 case 4:
21929 if (8 * sizeof(unsigned short) > 3 * PyLong_SHIFT) {
21930 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
21931 __PYX_VERIFY_RETURN_INT(unsigned short, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21932 } else if (8 * sizeof(unsigned short) >= 4 * PyLong_SHIFT) {
21933 return (unsigned short) (((((((((unsigned short)digits[3]) << PyLong_SHIFT) | (unsigned short)digits[2]) << PyLong_SHIFT) | (unsigned short)digits[1]) << PyLong_SHIFT) | (unsigned short)digits[0]));
21934 }
21935 }
21936 break;
21937 }
21938 #endif
21939 #if CYTHON_COMPILING_IN_CPYTHON
21940 if (unlikely(Py_SIZE(x) < 0)) {
21941 goto raise_neg_overflow;
21942 }
21943 #else
21944 {
21945 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
21946 if (unlikely(result < 0))
21947 return (unsigned short) -1;
21948 if (unlikely(result == 1))
21949 goto raise_neg_overflow;
21950 }
21951 #endif
21952 if (sizeof(unsigned short) <= sizeof(unsigned long)) {
21953 __PYX_VERIFY_RETURN_INT_EXC(unsigned short, unsigned long, PyLong_AsUnsignedLong(x))
21954 #ifdef HAVE_LONG_LONG
21955 } else if (sizeof(unsigned short) <= sizeof(unsigned PY_LONG_LONG)) {
21956 __PYX_VERIFY_RETURN_INT_EXC(unsigned short, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
21957 #endif
21958 }
21959 } else {
21960 #if CYTHON_USE_PYLONG_INTERNALS
21961 const digit* digits = ((PyLongObject*)x)->ob_digit;
21962 switch (Py_SIZE(x)) {
21963 case 0: return (unsigned short) 0;
21964 case -1: __PYX_VERIFY_RETURN_INT(unsigned short, sdigit, (sdigit) (-(sdigit)digits[0]))
21965 case 1: __PYX_VERIFY_RETURN_INT(unsigned short, digit, +digits[0])
21966 case -2:
21967 if (8 * sizeof(unsigned short) - 1 > 1 * PyLong_SHIFT) {
21968 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21969 __PYX_VERIFY_RETURN_INT(unsigned short, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21970 } else if (8 * sizeof(unsigned short) - 1 > 2 * PyLong_SHIFT) {
21971 return (unsigned short) (((unsigned short)-1)*(((((unsigned short)digits[1]) << PyLong_SHIFT) | (unsigned short)digits[0])));
21972 }
21973 }
21974 break;
21975 case 2:
21976 if (8 * sizeof(unsigned short) > 1 * PyLong_SHIFT) {
21977 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
21978 __PYX_VERIFY_RETURN_INT(unsigned short, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21979 } else if (8 * sizeof(unsigned short) - 1 > 2 * PyLong_SHIFT) {
21980 return (unsigned short) ((((((unsigned short)digits[1]) << PyLong_SHIFT) | (unsigned short)digits[0])));
21981 }
21982 }
21983 break;
21984 case -3:
21985 if (8 * sizeof(unsigned short) - 1 > 2 * PyLong_SHIFT) {
21986 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21987 __PYX_VERIFY_RETURN_INT(unsigned short, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21988 } else if (8 * sizeof(unsigned short) - 1 > 3 * PyLong_SHIFT) {
21989 return (unsigned short) (((unsigned short)-1)*(((((((unsigned short)digits[2]) << PyLong_SHIFT) | (unsigned short)digits[1]) << PyLong_SHIFT) | (unsigned short)digits[0])));
21990 }
21991 }
21992 break;
21993 case 3:
21994 if (8 * sizeof(unsigned short) > 2 * PyLong_SHIFT) {
21995 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
21996 __PYX_VERIFY_RETURN_INT(unsigned short, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
21997 } else if (8 * sizeof(unsigned short) - 1 > 3 * PyLong_SHIFT) {
21998 return (unsigned short) ((((((((unsigned short)digits[2]) << PyLong_SHIFT) | (unsigned short)digits[1]) << PyLong_SHIFT) | (unsigned short)digits[0])));
21999 }
22000 }
22001 break;
22002 case -4:
22003 if (8 * sizeof(unsigned short) - 1 > 3 * PyLong_SHIFT) {
22004 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
22005 __PYX_VERIFY_RETURN_INT(unsigned short, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22006 } else if (8 * sizeof(unsigned short) - 1 > 4 * PyLong_SHIFT) {
22007 return (unsigned short) (((unsigned short)-1)*(((((((((unsigned short)digits[3]) << PyLong_SHIFT) | (unsigned short)digits[2]) << PyLong_SHIFT) | (unsigned short)digits[1]) << PyLong_SHIFT) | (unsigned short)digits[0])));
22008 }
22009 }
22010 break;
22011 case 4:
22012 if (8 * sizeof(unsigned short) > 3 * PyLong_SHIFT) {
22013 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
22014 __PYX_VERIFY_RETURN_INT(unsigned short, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22015 } else if (8 * sizeof(unsigned short) - 1 > 4 * PyLong_SHIFT) {
22016 return (unsigned short) ((((((((((unsigned short)digits[3]) << PyLong_SHIFT) | (unsigned short)digits[2]) << PyLong_SHIFT) | (unsigned short)digits[1]) << PyLong_SHIFT) | (unsigned short)digits[0])));
22017 }
22018 }
22019 break;
22020 }
22021 #endif
22022 if (sizeof(unsigned short) <= sizeof(long)) {
22023 __PYX_VERIFY_RETURN_INT_EXC(unsigned short, long, PyLong_AsLong(x))
22024 #ifdef HAVE_LONG_LONG
22025 } else if (sizeof(unsigned short) <= sizeof(PY_LONG_LONG)) {
22026 __PYX_VERIFY_RETURN_INT_EXC(unsigned short, PY_LONG_LONG, PyLong_AsLongLong(x))
22027 #endif
22028 }
22029 }
22030 {
22031 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
22032 PyErr_SetString(PyExc_RuntimeError,
22033 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
22034 #else
22035 unsigned short val;
22036 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
22037 #if PY_MAJOR_VERSION < 3
22038 if (likely(v) && !PyLong_Check(v)) {
22039 PyObject *tmp = v;
22040 v = PyNumber_Long(tmp);
22041 Py_DECREF(tmp);
22042 }
22043 #endif
22044 if (likely(v)) {
22045 int one = 1; int is_little = (int)*(unsigned char *)&one;
22046 unsigned char *bytes = (unsigned char *)&val;
22047 int ret = _PyLong_AsByteArray((PyLongObject *)v,
22048 bytes, sizeof(val),
22049 is_little, !is_unsigned);
22050 Py_DECREF(v);
22051 if (likely(!ret))
22052 return val;
22053 }
22054 #endif
22055 return (unsigned short) -1;
22056 }
22057 } else {
22058 unsigned short val;
22059 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
22060 if (!tmp) return (unsigned short) -1;
22061 val = __Pyx_PyInt_As_unsigned_short(tmp);
22062 Py_DECREF(tmp);
22063 return val;
22064 }
22065 raise_overflow:
22066 PyErr_SetString(PyExc_OverflowError,
22067 "value too large to convert to unsigned short");
22068 return (unsigned short) -1;
22069 raise_neg_overflow:
22070 PyErr_SetString(PyExc_OverflowError,
22071 "can't convert negative value to unsigned short");
22072 return (unsigned short) -1;
22073 }
22074
22075 /* CIntFromPy */
__Pyx_PyInt_As_long(PyObject * x)22076 static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
22077 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
22078 #pragma GCC diagnostic push
22079 #pragma GCC diagnostic ignored "-Wconversion"
22080 #endif
22081 const long neg_one = (long) -1, const_zero = (long) 0;
22082 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
22083 #pragma GCC diagnostic pop
22084 #endif
22085 const int is_unsigned = neg_one > const_zero;
22086 #if PY_MAJOR_VERSION < 3
22087 if (likely(PyInt_Check(x))) {
22088 if (sizeof(long) < sizeof(long)) {
22089 __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
22090 } else {
22091 long val = PyInt_AS_LONG(x);
22092 if (is_unsigned && unlikely(val < 0)) {
22093 goto raise_neg_overflow;
22094 }
22095 return (long) val;
22096 }
22097 } else
22098 #endif
22099 if (likely(PyLong_Check(x))) {
22100 if (is_unsigned) {
22101 #if CYTHON_USE_PYLONG_INTERNALS
22102 const digit* digits = ((PyLongObject*)x)->ob_digit;
22103 switch (Py_SIZE(x)) {
22104 case 0: return (long) 0;
22105 case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
22106 case 2:
22107 if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
22108 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
22109 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22110 } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
22111 return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
22112 }
22113 }
22114 break;
22115 case 3:
22116 if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
22117 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
22118 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22119 } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
22120 return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
22121 }
22122 }
22123 break;
22124 case 4:
22125 if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
22126 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
22127 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22128 } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
22129 return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
22130 }
22131 }
22132 break;
22133 }
22134 #endif
22135 #if CYTHON_COMPILING_IN_CPYTHON
22136 if (unlikely(Py_SIZE(x) < 0)) {
22137 goto raise_neg_overflow;
22138 }
22139 #else
22140 {
22141 int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
22142 if (unlikely(result < 0))
22143 return (long) -1;
22144 if (unlikely(result == 1))
22145 goto raise_neg_overflow;
22146 }
22147 #endif
22148 if (sizeof(long) <= sizeof(unsigned long)) {
22149 __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
22150 #ifdef HAVE_LONG_LONG
22151 } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
22152 __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
22153 #endif
22154 }
22155 } else {
22156 #if CYTHON_USE_PYLONG_INTERNALS
22157 const digit* digits = ((PyLongObject*)x)->ob_digit;
22158 switch (Py_SIZE(x)) {
22159 case 0: return (long) 0;
22160 case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
22161 case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0])
22162 case -2:
22163 if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
22164 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
22165 __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22166 } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
22167 return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
22168 }
22169 }
22170 break;
22171 case 2:
22172 if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
22173 if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
22174 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22175 } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
22176 return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
22177 }
22178 }
22179 break;
22180 case -3:
22181 if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
22182 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
22183 __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22184 } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
22185 return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
22186 }
22187 }
22188 break;
22189 case 3:
22190 if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
22191 if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
22192 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22193 } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
22194 return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
22195 }
22196 }
22197 break;
22198 case -4:
22199 if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
22200 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
22201 __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22202 } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
22203 return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
22204 }
22205 }
22206 break;
22207 case 4:
22208 if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
22209 if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
22210 __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
22211 } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
22212 return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
22213 }
22214 }
22215 break;
22216 }
22217 #endif
22218 if (sizeof(long) <= sizeof(long)) {
22219 __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
22220 #ifdef HAVE_LONG_LONG
22221 } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
22222 __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
22223 #endif
22224 }
22225 }
22226 {
22227 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
22228 PyErr_SetString(PyExc_RuntimeError,
22229 "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
22230 #else
22231 long val;
22232 PyObject *v = __Pyx_PyNumber_IntOrLong(x);
22233 #if PY_MAJOR_VERSION < 3
22234 if (likely(v) && !PyLong_Check(v)) {
22235 PyObject *tmp = v;
22236 v = PyNumber_Long(tmp);
22237 Py_DECREF(tmp);
22238 }
22239 #endif
22240 if (likely(v)) {
22241 int one = 1; int is_little = (int)*(unsigned char *)&one;
22242 unsigned char *bytes = (unsigned char *)&val;
22243 int ret = _PyLong_AsByteArray((PyLongObject *)v,
22244 bytes, sizeof(val),
22245 is_little, !is_unsigned);
22246 Py_DECREF(v);
22247 if (likely(!ret))
22248 return val;
22249 }
22250 #endif
22251 return (long) -1;
22252 }
22253 } else {
22254 long val;
22255 PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
22256 if (!tmp) return (long) -1;
22257 val = __Pyx_PyInt_As_long(tmp);
22258 Py_DECREF(tmp);
22259 return val;
22260 }
22261 raise_overflow:
22262 PyErr_SetString(PyExc_OverflowError,
22263 "value too large to convert to long");
22264 return (long) -1;
22265 raise_neg_overflow:
22266 PyErr_SetString(PyExc_OverflowError,
22267 "can't convert negative value to long");
22268 return (long) -1;
22269 }
22270
22271 /* CIntToPy */
__Pyx_PyInt_From_long(long value)22272 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
22273 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
22274 #pragma GCC diagnostic push
22275 #pragma GCC diagnostic ignored "-Wconversion"
22276 #endif
22277 const long neg_one = (long) -1, const_zero = (long) 0;
22278 #ifdef __Pyx_HAS_GCC_DIAGNOSTIC
22279 #pragma GCC diagnostic pop
22280 #endif
22281 const int is_unsigned = neg_one > const_zero;
22282 if (is_unsigned) {
22283 if (sizeof(long) < sizeof(long)) {
22284 return PyInt_FromLong((long) value);
22285 } else if (sizeof(long) <= sizeof(unsigned long)) {
22286 return PyLong_FromUnsignedLong((unsigned long) value);
22287 #ifdef HAVE_LONG_LONG
22288 } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
22289 return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
22290 #endif
22291 }
22292 } else {
22293 if (sizeof(long) <= sizeof(long)) {
22294 return PyInt_FromLong((long) value);
22295 #ifdef HAVE_LONG_LONG
22296 } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
22297 return PyLong_FromLongLong((PY_LONG_LONG) value);
22298 #endif
22299 }
22300 }
22301 {
22302 int one = 1; int little = (int)*(unsigned char *)&one;
22303 unsigned char *bytes = (unsigned char *)&value;
22304 return _PyLong_FromByteArray(bytes, sizeof(long),
22305 little, !is_unsigned);
22306 }
22307 }
22308
22309 /* FastTypeChecks */
22310 #if CYTHON_COMPILING_IN_CPYTHON
__Pyx_InBases(PyTypeObject * a,PyTypeObject * b)22311 static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) {
22312 while (a) {
22313 a = a->tp_base;
22314 if (a == b)
22315 return 1;
22316 }
22317 return b == &PyBaseObject_Type;
22318 }
__Pyx_IsSubtype(PyTypeObject * a,PyTypeObject * b)22319 static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) {
22320 PyObject *mro;
22321 if (a == b) return 1;
22322 mro = a->tp_mro;
22323 if (likely(mro)) {
22324 Py_ssize_t i, n;
22325 n = PyTuple_GET_SIZE(mro);
22326 for (i = 0; i < n; i++) {
22327 if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b)
22328 return 1;
22329 }
22330 return 0;
22331 }
22332 return __Pyx_InBases(a, b);
22333 }
22334 #if PY_MAJOR_VERSION == 2
__Pyx_inner_PyErr_GivenExceptionMatches2(PyObject * err,PyObject * exc_type1,PyObject * exc_type2)22335 static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) {
22336 PyObject *exception, *value, *tb;
22337 int res;
22338 __Pyx_PyThreadState_declare
22339 __Pyx_PyThreadState_assign
22340 __Pyx_ErrFetch(&exception, &value, &tb);
22341 res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0;
22342 if (unlikely(res == -1)) {
22343 PyErr_WriteUnraisable(err);
22344 res = 0;
22345 }
22346 if (!res) {
22347 res = PyObject_IsSubclass(err, exc_type2);
22348 if (unlikely(res == -1)) {
22349 PyErr_WriteUnraisable(err);
22350 res = 0;
22351 }
22352 }
22353 __Pyx_ErrRestore(exception, value, tb);
22354 return res;
22355 }
22356 #else
__Pyx_inner_PyErr_GivenExceptionMatches2(PyObject * err,PyObject * exc_type1,PyObject * exc_type2)22357 static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) {
22358 int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0;
22359 if (!res) {
22360 res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2);
22361 }
22362 return res;
22363 }
22364 #endif
__Pyx_PyErr_GivenExceptionMatchesTuple(PyObject * exc_type,PyObject * tuple)22365 static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
22366 Py_ssize_t i, n;
22367 assert(PyExceptionClass_Check(exc_type));
22368 n = PyTuple_GET_SIZE(tuple);
22369 #if PY_MAJOR_VERSION >= 3
22370 for (i=0; i<n; i++) {
22371 if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
22372 }
22373 #endif
22374 for (i=0; i<n; i++) {
22375 PyObject *t = PyTuple_GET_ITEM(tuple, i);
22376 #if PY_MAJOR_VERSION < 3
22377 if (likely(exc_type == t)) return 1;
22378 #endif
22379 if (likely(PyExceptionClass_Check(t))) {
22380 if (__Pyx_inner_PyErr_GivenExceptionMatches2(exc_type, NULL, t)) return 1;
22381 } else {
22382 }
22383 }
22384 return 0;
22385 }
__Pyx_PyErr_GivenExceptionMatches(PyObject * err,PyObject * exc_type)22386 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) {
22387 if (likely(err == exc_type)) return 1;
22388 if (likely(PyExceptionClass_Check(err))) {
22389 if (likely(PyExceptionClass_Check(exc_type))) {
22390 return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type);
22391 } else if (likely(PyTuple_Check(exc_type))) {
22392 return __Pyx_PyErr_GivenExceptionMatchesTuple(err, exc_type);
22393 } else {
22394 }
22395 }
22396 return PyErr_GivenExceptionMatches(err, exc_type);
22397 }
__Pyx_PyErr_GivenExceptionMatches2(PyObject * err,PyObject * exc_type1,PyObject * exc_type2)22398 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) {
22399 assert(PyExceptionClass_Check(exc_type1));
22400 assert(PyExceptionClass_Check(exc_type2));
22401 if (likely(err == exc_type1 || err == exc_type2)) return 1;
22402 if (likely(PyExceptionClass_Check(err))) {
22403 return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2);
22404 }
22405 return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2));
22406 }
22407 #endif
22408
22409 /* CheckBinaryVersion */
__Pyx_check_binary_version(void)22410 static int __Pyx_check_binary_version(void) {
22411 char ctversion[4], rtversion[4];
22412 PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
22413 PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
22414 if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
22415 char message[200];
22416 PyOS_snprintf(message, sizeof(message),
22417 "compiletime version %s of module '%.100s' "
22418 "does not match runtime version %s",
22419 ctversion, __Pyx_MODULE_NAME, rtversion);
22420 return PyErr_WarnEx(NULL, message, 1);
22421 }
22422 return 0;
22423 }
22424
22425 /* InitStrings */
__Pyx_InitStrings(__Pyx_StringTabEntry * t)22426 static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
22427 while (t->p) {
22428 #if PY_MAJOR_VERSION < 3
22429 if (t->is_unicode) {
22430 *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
22431 } else if (t->intern) {
22432 *t->p = PyString_InternFromString(t->s);
22433 } else {
22434 *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
22435 }
22436 #else
22437 if (t->is_unicode | t->is_str) {
22438 if (t->intern) {
22439 *t->p = PyUnicode_InternFromString(t->s);
22440 } else if (t->encoding) {
22441 *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
22442 } else {
22443 *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
22444 }
22445 } else {
22446 *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
22447 }
22448 #endif
22449 if (!*t->p)
22450 return -1;
22451 if (PyObject_Hash(*t->p) == -1)
22452 return -1;
22453 ++t;
22454 }
22455 return 0;
22456 }
22457
__Pyx_PyUnicode_FromString(const char * c_str)22458 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
22459 return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
22460 }
__Pyx_PyObject_AsString(PyObject * o)22461 static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) {
22462 Py_ssize_t ignore;
22463 return __Pyx_PyObject_AsStringAndSize(o, &ignore);
22464 }
22465 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
22466 #if !CYTHON_PEP393_ENABLED
__Pyx_PyUnicode_AsStringAndSize(PyObject * o,Py_ssize_t * length)22467 static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
22468 char* defenc_c;
22469 PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
22470 if (!defenc) return NULL;
22471 defenc_c = PyBytes_AS_STRING(defenc);
22472 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
22473 {
22474 char* end = defenc_c + PyBytes_GET_SIZE(defenc);
22475 char* c;
22476 for (c = defenc_c; c < end; c++) {
22477 if ((unsigned char) (*c) >= 128) {
22478 PyUnicode_AsASCIIString(o);
22479 return NULL;
22480 }
22481 }
22482 }
22483 #endif
22484 *length = PyBytes_GET_SIZE(defenc);
22485 return defenc_c;
22486 }
22487 #else
__Pyx_PyUnicode_AsStringAndSize(PyObject * o,Py_ssize_t * length)22488 static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
22489 if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL;
22490 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
22491 if (likely(PyUnicode_IS_ASCII(o))) {
22492 *length = PyUnicode_GET_LENGTH(o);
22493 return PyUnicode_AsUTF8(o);
22494 } else {
22495 PyUnicode_AsASCIIString(o);
22496 return NULL;
22497 }
22498 #else
22499 return PyUnicode_AsUTF8AndSize(o, length);
22500 #endif
22501 }
22502 #endif
22503 #endif
__Pyx_PyObject_AsStringAndSize(PyObject * o,Py_ssize_t * length)22504 static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
22505 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
22506 if (
22507 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
22508 __Pyx_sys_getdefaultencoding_not_ascii &&
22509 #endif
22510 PyUnicode_Check(o)) {
22511 return __Pyx_PyUnicode_AsStringAndSize(o, length);
22512 } else
22513 #endif
22514 #if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
22515 if (PyByteArray_Check(o)) {
22516 *length = PyByteArray_GET_SIZE(o);
22517 return PyByteArray_AS_STRING(o);
22518 } else
22519 #endif
22520 {
22521 char* result;
22522 int r = PyBytes_AsStringAndSize(o, &result, length);
22523 if (unlikely(r < 0)) {
22524 return NULL;
22525 } else {
22526 return result;
22527 }
22528 }
22529 }
__Pyx_PyObject_IsTrue(PyObject * x)22530 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
22531 int is_true = x == Py_True;
22532 if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
22533 else return PyObject_IsTrue(x);
22534 }
__Pyx_PyObject_IsTrueAndDecref(PyObject * x)22535 static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) {
22536 int retval;
22537 if (unlikely(!x)) return -1;
22538 retval = __Pyx_PyObject_IsTrue(x);
22539 Py_DECREF(x);
22540 return retval;
22541 }
__Pyx_PyNumber_IntOrLongWrongResultType(PyObject * result,const char * type_name)22542 static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) {
22543 #if PY_MAJOR_VERSION >= 3
22544 if (PyLong_Check(result)) {
22545 if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1,
22546 "__int__ returned non-int (type %.200s). "
22547 "The ability to return an instance of a strict subclass of int "
22548 "is deprecated, and may be removed in a future version of Python.",
22549 Py_TYPE(result)->tp_name)) {
22550 Py_DECREF(result);
22551 return NULL;
22552 }
22553 return result;
22554 }
22555 #endif
22556 PyErr_Format(PyExc_TypeError,
22557 "__%.4s__ returned non-%.4s (type %.200s)",
22558 type_name, type_name, Py_TYPE(result)->tp_name);
22559 Py_DECREF(result);
22560 return NULL;
22561 }
__Pyx_PyNumber_IntOrLong(PyObject * x)22562 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
22563 #if CYTHON_USE_TYPE_SLOTS
22564 PyNumberMethods *m;
22565 #endif
22566 const char *name = NULL;
22567 PyObject *res = NULL;
22568 #if PY_MAJOR_VERSION < 3
22569 if (likely(PyInt_Check(x) || PyLong_Check(x)))
22570 #else
22571 if (likely(PyLong_Check(x)))
22572 #endif
22573 return __Pyx_NewRef(x);
22574 #if CYTHON_USE_TYPE_SLOTS
22575 m = Py_TYPE(x)->tp_as_number;
22576 #if PY_MAJOR_VERSION < 3
22577 if (m && m->nb_int) {
22578 name = "int";
22579 res = m->nb_int(x);
22580 }
22581 else if (m && m->nb_long) {
22582 name = "long";
22583 res = m->nb_long(x);
22584 }
22585 #else
22586 if (likely(m && m->nb_int)) {
22587 name = "int";
22588 res = m->nb_int(x);
22589 }
22590 #endif
22591 #else
22592 if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) {
22593 res = PyNumber_Int(x);
22594 }
22595 #endif
22596 if (likely(res)) {
22597 #if PY_MAJOR_VERSION < 3
22598 if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) {
22599 #else
22600 if (unlikely(!PyLong_CheckExact(res))) {
22601 #endif
22602 return __Pyx_PyNumber_IntOrLongWrongResultType(res, name);
22603 }
22604 }
22605 else if (!PyErr_Occurred()) {
22606 PyErr_SetString(PyExc_TypeError,
22607 "an integer is required");
22608 }
22609 return res;
22610 }
22611 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
22612 Py_ssize_t ival;
22613 PyObject *x;
22614 #if PY_MAJOR_VERSION < 3
22615 if (likely(PyInt_CheckExact(b))) {
22616 if (sizeof(Py_ssize_t) >= sizeof(long))
22617 return PyInt_AS_LONG(b);
22618 else
22619 return PyInt_AsSsize_t(b);
22620 }
22621 #endif
22622 if (likely(PyLong_CheckExact(b))) {
22623 #if CYTHON_USE_PYLONG_INTERNALS
22624 const digit* digits = ((PyLongObject*)b)->ob_digit;
22625 const Py_ssize_t size = Py_SIZE(b);
22626 if (likely(__Pyx_sst_abs(size) <= 1)) {
22627 ival = likely(size) ? digits[0] : 0;
22628 if (size == -1) ival = -ival;
22629 return ival;
22630 } else {
22631 switch (size) {
22632 case 2:
22633 if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
22634 return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
22635 }
22636 break;
22637 case -2:
22638 if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
22639 return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
22640 }
22641 break;
22642 case 3:
22643 if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
22644 return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
22645 }
22646 break;
22647 case -3:
22648 if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
22649 return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
22650 }
22651 break;
22652 case 4:
22653 if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
22654 return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
22655 }
22656 break;
22657 case -4:
22658 if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
22659 return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
22660 }
22661 break;
22662 }
22663 }
22664 #endif
22665 return PyLong_AsSsize_t(b);
22666 }
22667 x = PyNumber_Index(b);
22668 if (!x) return -1;
22669 ival = PyInt_AsSsize_t(x);
22670 Py_DECREF(x);
22671 return ival;
22672 }
22673 static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) {
22674 if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) {
22675 return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o);
22676 #if PY_MAJOR_VERSION < 3
22677 } else if (likely(PyInt_CheckExact(o))) {
22678 return PyInt_AS_LONG(o);
22679 #endif
22680 } else {
22681 Py_ssize_t ival;
22682 PyObject *x;
22683 x = PyNumber_Index(o);
22684 if (!x) return -1;
22685 ival = PyInt_AsLong(x);
22686 Py_DECREF(x);
22687 return ival;
22688 }
22689 }
22690 static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) {
22691 return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False);
22692 }
22693 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
22694 return PyInt_FromSize_t(ival);
22695 }
22696
22697
22698 #endif /* Py_PYTHON_H */
22699