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Searched refs:add_intron (Results 1 – 7 of 7) sorted by relevance

/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/lib/tRNAscanSE/
H A DResultFileReader.pm211 $tRNA->add_intron($rel_start, $rel_end, $intron_starts[$j], $intron_ends[$j], "", "");
306 $tRNA->add_intron($1, $2, $3, $4, "");
H A DTscan.pm296 $trna->add_intron($1, $2, $1, $2, "CI");
H A DIntResultFile.pm258 $tRNA->add_intron($rel_start, $rel_end, $start, $end, $parts[2], $parts[3]);
H A DtRNA.pm531 $self->add_intron($rel_start, $rel_end, $start, $end, $type, $seq);
534 sub add_intron subroutine
H A DCM.pm1078 $trna->add_intron($istart, $iend, $intron_start, $intron_end, "CI", $intron);
1196 $trna->add_intron($istart, $iend, $intron_start, $intron_end, "CI", $intron);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/bam/
H A Dbamloader_impl.cpp2281 void add_intron(TSignedSeqPos gap_pos, TSeqPos gap_len) in add_intron() function
2290 add_intron(gap_pos, gap_len); in add_gap()
2400 ss.add_intron(ss_pos, seglen); in LoadPileupChunk()
2478 ss.add_intron(ss_pos, seglen); in LoadPileupChunk()
/dports/biology/gmap/gmap-2020-09-12/src/
H A Dstage3.c2560 add_intron (List_T pairs, Univcoord_T chroffset, Univcoord_T chrhigh, in add_intron() function
5160 pairs = add_intron(pairs,chroffset,chrhigh,leftpair,rightpair,comp,introntype,ngap, in fill_in_gaps()