Searched refs:add_intron (Results 1 – 7 of 7) sorted by relevance
/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/lib/tRNAscanSE/ |
H A D | ResultFileReader.pm | 211 $tRNA->add_intron($rel_start, $rel_end, $intron_starts[$j], $intron_ends[$j], "", ""); 306 $tRNA->add_intron($1, $2, $3, $4, "");
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H A D | Tscan.pm | 296 $trna->add_intron($1, $2, $1, $2, "CI");
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H A D | IntResultFile.pm | 258 $tRNA->add_intron($rel_start, $rel_end, $start, $end, $parts[2], $parts[3]);
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H A D | tRNA.pm | 531 $self->add_intron($rel_start, $rel_end, $start, $end, $type, $seq); 534 sub add_intron subroutine
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H A D | CM.pm | 1078 $trna->add_intron($istart, $iend, $intron_start, $intron_end, "CI", $intron); 1196 $trna->add_intron($istart, $iend, $intron_start, $intron_end, "CI", $intron);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/bam/ |
H A D | bamloader_impl.cpp | 2281 void add_intron(TSignedSeqPos gap_pos, TSeqPos gap_len) in add_intron() function 2290 add_intron(gap_pos, gap_len); in add_gap() 2400 ss.add_intron(ss_pos, seglen); in LoadPileupChunk() 2478 ss.add_intron(ss_pos, seglen); in LoadPileupChunk()
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/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | stage3.c | 2560 add_intron (List_T pairs, Univcoord_T chroffset, Univcoord_T chrhigh, in add_intron() function 5160 pairs = add_intron(pairs,chroffset,chrhigh,leftpair,rightpair,comp,introntype,ngap, in fill_in_gaps()
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