/dports/devel/agar/agar-1.5.0/ada-gui/UNIT_TESTS/ |
H A D | ada_size.ald | 1 ada_size.ali 2 ../agar-gui-colors.ali 3 ../agar-gui-draw.ali 5 ../agar-gui-point.ali 6 ../agar-gui-rect.ali 7 ../agar-gui-style.ali 9 ../agar-gui-text.ali 10 ../agar-gui-types.ali 11 ../agar-gui-unit.ali 12 ../agar-gui-view.ali [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
H A D | test_local_align.h | 56 Align< String<char>, ArrayGaps> ali; in SEQAN_DEFINE_TEST() local 57 resize(rows(ali), 2); in SEQAN_DEFINE_TEST() 58 setSource(row(ali, 0), str0); in SEQAN_DEFINE_TEST() 59 setSource(row(ali, 1), str1); in SEQAN_DEFINE_TEST() 69 SEQAN_ASSERT(row(ali,0) == "ataagcgt"); in SEQAN_DEFINE_TEST() 70 SEQAN_ASSERT(row(ali,1) == "ata-gagt"); in SEQAN_DEFINE_TEST() 210 Align< String<char>, ArrayGaps> ali; in SEQAN_DEFINE_TEST() local 211 resize(rows(ali), 2); in SEQAN_DEFINE_TEST() 212 setSource(row(ali, 0), str0); in SEQAN_DEFINE_TEST() 213 setSource(row(ali, 1), str1); in SEQAN_DEFINE_TEST() [all …]
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/dports/devel/matreshka/matreshka-0.7.0/ |
H A D | Makefile.install | 847 rm -f league-src.lst league-ali.lst 848 rm -f xml-src.lst xml-ali.lst xml-src.aux 849 rm -f fastcgi-src.lst fastcgi-ali.lst fastcgi-src.aux 850 rm -f servlet-src.lst servlet-ali.lst servlet-src.aux 853 rm -f soap-src.lst soap-ali.lst soap-src.aux 855 rm -f sql-src.lst sql-ali.lst sql-src.aux 857 rm -f sql_oci-src.lst sql_oci-ali.lst sql_oci-src.aux 860 rm -f amf-src.lst amf-ali.lst amf-src.aux 861 rm -f amf_dd-src.lst amf_dd-ali.lst amf_dd-src.aux 862 rm -f amf_uml-src.lst amf_uml-ali.lst amf_uml-src.aux [all …]
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/dports/biology/infernal/infernal-1.1.3/src/ |
H A D | display.c | 160 memset(ali->cstr, ' ', ali->len); in CreateFancyAli() 161 memset(ali->cseq, ' ', ali->len); in CreateFancyAli() 162 memset(ali->mid, ' ', ali->len); in CreateFancyAli() 413 ali->cstr[ali->len] = '\0'; in CreateFancyAli() 414 ali->cseq[ali->len] = '\0'; in CreateFancyAli() 415 ali->mid[ali->len] = '\0'; in CreateFancyAli() 416 ali->top[ali->len] = '\0'; in CreateFancyAli() 417 ali->aseq[ali->len] = '\0'; in CreateFancyAli() 419 ali->pcode[ali->len] = '\0'; in CreateFancyAli() 431 if (ali->scoord[pos] != 0) ali->sqto = ali->scoord[pos]; in CreateFancyAli() [all …]
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/dports/biology/wise/wise2.4.1/src/HMMer2/ |
H A D | tophits.c | 114 ali->rfline = ali->csline = ali->model = ali->mline = ali->aseq = NULL; in AllocFancyAli() 115 ali->query = ali->target = NULL; in AllocFancyAli() 116 ali->sqfrom = ali->sqto = 0; in AllocFancyAli() 123 if (ali->rfline != NULL) free(ali->rfline); in FreeFancyAli() 124 if (ali->csline != NULL) free(ali->csline); in FreeFancyAli() 125 if (ali->model != NULL) free(ali->model); in FreeFancyAli() 126 if (ali->mline != NULL) free(ali->mline); in FreeFancyAli() 127 if (ali->aseq != NULL) free(ali->aseq); in FreeFancyAli() 128 if (ali->query != NULL) free(ali->query); in FreeFancyAli() 129 if (ali->target != NULL) free(ali->target); in FreeFancyAli() [all …]
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H A D | trace.c | 623 ali->rfline = NULL; in CreateFancyAli() 624 ali->csline = NULL; in CreateFancyAli() 697 ali->model[tpos] = tolower(ali->model[tpos]); in CreateFancyAli() 702 ali->mline[tpos] = tolower(ali->mline[tpos]); in CreateFancyAli() 705 ali->mline[tpos] = '+'; in CreateFancyAli() 715 ali->model[tpos] = tolower(ali->model[tpos]); in CreateFancyAli() 722 ali->mline[tpos] = '+'; in CreateFancyAli() 731 ali->len = tpos; in CreateFancyAli() 734 ali->model[tpos] = '\0'; in CreateFancyAli() 737 return ali; in CreateFancyAli() [all …]
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/dports/mail/mailutils/mailutils-3.13/mh/tests/ |
H A D | ali.at | 17 AT_BANNER(ali) 25 ali -a ./mh_aliases devel 42 MH_CHECK([ali: file inlcusion],[ali02 ali-include],[ 56 MH_CHECK([ali: recursive inlcusion],[ali03 ali-include-recursive],[ 77 MH_CHECK([ali: group name],[ali04 ali-group-name],[ 87 MH_CHECK([ali: group id],[ali05 ali-group-id ali-gid],[ 100 MH_CHECK([ali: everybody],[ali06 ali-everybody],[ 111 MH_CHECK([ali: executable file inlcusion],[ali02 ali-xinclude],[ 115 chmod +x Mail/ali.sh 118 <ali.sh [all …]
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/dports/mail/im/im-153/IM/ |
H A D | Alias.pm | 40 my $ali; 42 foreach $ali (@news) { 43 $ali = expand_path($ali); 44 if (-r $ali) { 59 $ali = expand_path($ali); 61 if ($MAIL_ALIAS_HASH{$ali}) { 66 unless (open(ALIAS, "<$ali")) { 72 $MAIL_ALIAS_HASH{$ali} = 1; 163 my $ali; 166 foreach $ali (@aliases) { [all …]
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/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/src/hmmer2/ |
H A D | tophits.cpp | 111 ali->rfline = ali->csline = ali->model = ali->mline = ali->aseq = NULL; in AllocFancyAli() 112 ali->query = ali->target = NULL; in AllocFancyAli() 113 ali->sqfrom = ali->sqto = 0; in AllocFancyAli() 120 if (ali->rfline != NULL) free(ali->rfline); in FreeFancyAli() 121 if (ali->csline != NULL) free(ali->csline); in FreeFancyAli() 122 if (ali->model != NULL) free(ali->model); in FreeFancyAli() 123 if (ali->mline != NULL) free(ali->mline); in FreeFancyAli() 124 if (ali->aseq != NULL) free(ali->aseq); in FreeFancyAli() 125 if (ali->query != NULL) free(ali->query); in FreeFancyAli() 126 if (ali->target != NULL) free(ali->target); in FreeFancyAli() [all …]
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/dports/devel/agar/agar-1.5.0/ada-gui/ |
H A D | Makefile | 148 agar-gui-colors.ali agar-gui-draw.ali agar-gui-pixelformat.ali \ 149 agar-gui-point.ali agar-gui-rect.ali agar-gui-style.ali agar-gui-surface.ali \ 150 agar-gui-text.ali agar-gui-types.ali agar-gui-unit.ali agar-gui-view.ali \ 151 agar-gui-widget-box.ali agar-gui-widget-button.ali agar-gui-widget-checkbox.ali \ 152 agar-gui-widget-combo.ali agar-gui-widget-console.ali \ 155 agar-gui-widget-graph.ali agar-gui-widget-hbox.ali agar-gui-widget-hsvpal.ali \ 156 agar-gui-widget-icon.ali agar-gui-widget-label.ali agar-gui-widget-menu.ali \ 162 agar-gui-widget-socket.ali agar-gui-widget-table.ali \ 164 agar-gui-widget-tlist.ali agar-gui-widget-toolbar.ali \ 165 agar-gui-widget-ucombo.ali agar-gui-widget-vbox.ali agar-gui-widget.ali \ [all …]
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/dports/www/trafficserver/trafficserver-9.1.1/src/tscore/ |
H A D | test_atomic.cc | 82 int ali; in init_data() local 86 for (ali = 0; ali < MAX_ATOMIC_LISTS; ali++) in init_data() 89 for (ali = 0; ali < MAX_ATOMIC_LISTS; ali++) { in init_data() 92 items[ali + j] = plistItem; in init_data() 93 plistItem->data1 = ali + j; in init_data() 94 plistItem->data2 = ali + rand(); in init_data() 97 plistItem->data4 = ali + j + rand(); in init_data() 179 int ali; in main() local 183 for (ali = 0; ali < MAX_ALIST_TEST; ali++) { in main() 184 ink_atomiclist_init(&al[ali], "foo", 0); in main() [all …]
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/dports/devel/agar/agar-1.5.0/ada-demos/ |
H A D | Makefile | 6 demo.ali demo.o keyevent keyevent.ali keyevent.o keyevent_callbacks.ali \ 7 keyevent_callbacks.o slider slider.ali slider.o slider_callbacks.ali \ 157 demo.ali:\ 162 demo.ali 165 ada-bind ada-link keyevent.ald keyevent.ali keyevent_callbacks.ali demo.ali 174 keyevent.ali 203 ada-bind ada-link slider.ald slider.ali slider_callbacks.ali demo.ali 212 slider.ali 222 ada-bind ada-link winicon.ald winicon.ali winicon_callbacks.ali demo.ali 231 winicon.ali [all …]
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/dports/lang/gcc9-aux/bootstrap/lib/gcc/x86_64-aux-dragonfly5.5/9.1.0/adalib/ |
H A D | g-strspl.ali | 30 W ada%s ada.ads ada.ali 31 Z ada.exceptions%s a-except.adb a-except.ali 33 Z ada.streams%s a-stream.adb a-stream.ali 34 W ada.strings%s a-string.ads a-string.ali 36 Z ada.tags%s a-tags.adb a-tags.ali 38 W gnat%s gnat.ads gnat.ali 40 Z system%s system.ads system.ali 50 W ada%s ada.ads ada.ali 56 Z ada.tags%s a-tags.adb a-tags.ali 57 W gnat%s gnat.ads gnat.ali [all …]
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H A D | g-wistsp.ali | 30 W ada%s ada.ads ada.ali 31 Z ada.exceptions%s a-except.adb a-except.ali 33 Z ada.streams%s a-stream.adb a-stream.ali 34 W ada.strings%s a-string.ads a-string.ali 36 Z ada.tags%s a-tags.adb a-tags.ali 38 W gnat%s gnat.ads gnat.ali 40 Z system%s system.ads system.ali 50 W ada%s ada.ads ada.ali 56 Z ada.tags%s a-tags.adb a-tags.ali 57 W gnat%s gnat.ads gnat.ali [all …]
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H A D | g-zstspl.ali | 30 W ada%s ada.ads ada.ali 31 Z ada.exceptions%s a-except.adb a-except.ali 33 Z ada.streams%s a-stream.adb a-stream.ali 34 W ada.strings%s a-string.ads a-string.ali 36 Z ada.tags%s a-tags.adb a-tags.ali 38 W gnat%s gnat.ads gnat.ali 40 Z system%s system.ads system.ali 50 W ada%s ada.ads ada.ali 56 Z ada.tags%s a-tags.adb a-tags.ali 57 W gnat%s gnat.ads gnat.ali [all …]
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H A D | g-sptavs.ali | 35 Z ada.exceptions%s a-except.adb a-except.ali 36 Z ada.streams%s a-stream.adb a-stream.ali 37 Z ada.tags%s a-tags.adb a-tags.ali 38 W gnat.spitbol%s g-spitbo.adb g-spitbo.ali 39 Z system%s system.ads system.ali 43 Z system.soft_links%s s-soflin.adb s-soflin.ali 52 Z ada.exceptions%s a-except.adb a-except.ali 53 Z ada.streams%s a-stream.adb a-stream.ali 54 Z ada.tags%s a-tags.adb a-tags.ali 55 W gnat.spitbol%s g-spitbo.adb g-spitbo.ali [all …]
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/dports/lang/gcc6-aux/bootstrap/lib/gcc/x86_64-aux-dragonfly4.1/5.1.0/adalib/ |
H A D | g-strspl.ali | 29 W ada%s ada.ads ada.ali 30 W ada.exceptions%s a-except.adb a-except.ali 32 W ada.streams%s a-stream.adb a-stream.ali 33 W ada.strings%s a-string.ads a-string.ali 35 W ada.tags%s a-tags.adb a-tags.ali 37 W gnat%s gnat.ads gnat.ali 39 W system%s system.ads system.ali 49 W ada%s ada.ads ada.ali 55 W ada.tags%s a-tags.adb a-tags.ali 56 W gnat%s gnat.ads gnat.ali [all …]
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H A D | g-zstspl.ali | 29 W ada%s ada.ads ada.ali 30 W ada.exceptions%s a-except.adb a-except.ali 32 W ada.streams%s a-stream.adb a-stream.ali 33 W ada.strings%s a-string.ads a-string.ali 35 W ada.tags%s a-tags.adb a-tags.ali 37 W gnat%s gnat.ads gnat.ali 39 W system%s system.ads system.ali 49 W ada%s ada.ads ada.ali 55 W ada.tags%s a-tags.adb a-tags.ali 56 W gnat%s gnat.ads gnat.ali [all …]
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H A D | g-wistsp.ali | 29 W ada%s ada.ads ada.ali 30 W ada.exceptions%s a-except.adb a-except.ali 32 W ada.streams%s a-stream.adb a-stream.ali 33 W ada.strings%s a-string.ads a-string.ali 35 W ada.tags%s a-tags.adb a-tags.ali 37 W gnat%s gnat.ads gnat.ali 39 W system%s system.ads system.ali 49 W ada%s ada.ads ada.ali 55 W ada.tags%s a-tags.adb a-tags.ali 56 W gnat%s gnat.ads gnat.ali [all …]
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H A D | g-sptavs.ali | 34 W ada.exceptions%s a-except.adb a-except.ali 35 W ada.streams%s a-stream.adb a-stream.ali 36 W ada.tags%s a-tags.adb a-tags.ali 37 W gnat.spitbol%s g-spitbo.adb g-spitbo.ali 38 W system%s system.ads system.ali 42 W system.soft_links%s s-soflin.adb s-soflin.ali 51 W ada.exceptions%s a-except.adb a-except.ali 52 W ada.streams%s a-stream.adb a-stream.ali 53 W ada.tags%s a-tags.adb a-tags.ali 54 W gnat.spitbol%s g-spitbo.adb g-spitbo.ali [all …]
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/dports/textproc/uncrustify/uncrustify-uncrustify-0.74.0/src/ |
H A D | align_stack.cpp | 196 chunk_t *ali = start; in Add() local 206 ali = tmp_prev; in Add() 212 ali = tmp_prev; in Add() 227 ali = tmp_prev; in Add() 280 if (ref != ali) in Add() 284 chunk_t *tmp = ali; in Add() 308 ali->align.ref = ref; in Add() 309 ali->align.start = start; in Add() 317 …__func__, __LINE__, ali->text(), start->text(), ali->orig_line, ali->column, get_token_name(ali->t… in Add() 322 …__func__, __LINE__, ali->text(), ali->orig_line, ali->column, get_token_name(ali->type), ali->leve… in Add() [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/pairwise_sequence_alignment/ |
H A D | alignment_local.cpp | 11 Align<String<char> > ali; in main() local 12 resize(rows(ali), 2); in main() 13 assignSource(row(ali, 0), "aphilologicaltheorem"); in main() 14 assignSource(row(ali, 1), "bizarreamphibology"); in main() 18 …std::cout << "Score = " << localAlignment(ali, Score<int>(3, -3, -2, -2), DynamicGaps()) << std::e… in main() 19 std::cout << ali; in main() 20 …::cout << "Aligns Seq1[" << clippedBeginPosition(row(ali, 0)) << ":" << (clippedEndPosition(row(al… in main() 21 …td::cout << " and Seq2[" << clippedBeginPosition(row(ali, 1)) << ":" << (clippedEndPosition(row(a… in main()
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/dports/devel/agar/agar-1.5.0/ada-core/ |
H A D | Makefile | 8 agar-core-data_source.ali agar-core-data_source.o agar-core-database.ali \ 9 agar-core-database.o agar-core-dso.ali agar-core-dso.o agar-core-error.ali \ 10 agar-core-error.o agar-core-event.ali agar-core-event.o agar-core-init.ali \ 138 agar-core.ali 153 agar-core.ali agar-core-thin.ali 160 agar-core.ali agar-core-thin.ali 167 agar-core.ali 175 agar-core.ali agar-core-thin.ali 182 agar-core.ali agar-core-thin.ali 189 agar-core.ali agar-core-thin.ali agar-core-data_source.ali [all …]
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/dports/biology/seqan1/seqan-1.3.1/demos/tutorial/alignments/ |
H A D | alignment_pairwise_local.cpp | 10 Align< String<char> > ali; in main() local 11 appendValue(rows(ali), "aphilologicaltheorem"); in main() 12 appendValue(rows(ali), "bizarreamphibology"); in main() 15 …::std::cout << "Score = " << localAlignment(ali, Score<int>(3,-3,-2, -2), SmithWaterman()) << ::st… in main() 16 ::std::cout << ali; in main() 17 …::cout << "Aligns Seq1[" << clippedBeginPosition(row(ali, 0)) << ":" << (clippedEndPosition(row(al… in main() 18 …td::cout << " and Seq2[" << clippedBeginPosition(row(ali, 1)) << ":" << (clippedEndPosition(row(a… in main()
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/dports/science/py-ase/ase-3.22.0/ase/test/vibrations/ |
H A D | test_profeta_albrecht.py | 24 pri, ali = 0, 0 35 ali = al.get_absolute_intensities(omega=om, gamma=gam)[-1] 36 print('pri, ali', pri, ali) 37 assert pri == pytest.approx(ali, 1e-2) 44 ali = al.get_absolute_intensities(omega=om, gamma=gam)[-1] 45 print('pri, ali', pri, ali) 46 assert pri == pytest.approx(ali, 1e-2) 53 ali = al.get_absolute_intensities(omega=om, gamma=gam)[-1] 54 print('pri, ali', pri, ali) 55 assert pri == pytest.approx(ali, 1e-2)
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