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/dports/devel/agar/agar-1.5.0/ada-gui/UNIT_TESTS/
H A Dada_size.ald1 ada_size.ali
2 ../agar-gui-colors.ali
3 ../agar-gui-draw.ali
5 ../agar-gui-point.ali
6 ../agar-gui-rect.ali
7 ../agar-gui-style.ali
9 ../agar-gui-text.ali
10 ../agar-gui-types.ali
11 ../agar-gui-unit.ali
12 ../agar-gui-view.ali
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/
H A Dtest_local_align.h56 Align< String<char>, ArrayGaps> ali; in SEQAN_DEFINE_TEST() local
57 resize(rows(ali), 2); in SEQAN_DEFINE_TEST()
58 setSource(row(ali, 0), str0); in SEQAN_DEFINE_TEST()
59 setSource(row(ali, 1), str1); in SEQAN_DEFINE_TEST()
69 SEQAN_ASSERT(row(ali,0) == "ataagcgt"); in SEQAN_DEFINE_TEST()
70 SEQAN_ASSERT(row(ali,1) == "ata-gagt"); in SEQAN_DEFINE_TEST()
210 Align< String<char>, ArrayGaps> ali; in SEQAN_DEFINE_TEST() local
211 resize(rows(ali), 2); in SEQAN_DEFINE_TEST()
212 setSource(row(ali, 0), str0); in SEQAN_DEFINE_TEST()
213 setSource(row(ali, 1), str1); in SEQAN_DEFINE_TEST()
[all …]
/dports/devel/matreshka/matreshka-0.7.0/
H A DMakefile.install847 rm -f league-src.lst league-ali.lst
848 rm -f xml-src.lst xml-ali.lst xml-src.aux
849 rm -f fastcgi-src.lst fastcgi-ali.lst fastcgi-src.aux
850 rm -f servlet-src.lst servlet-ali.lst servlet-src.aux
853 rm -f soap-src.lst soap-ali.lst soap-src.aux
855 rm -f sql-src.lst sql-ali.lst sql-src.aux
857 rm -f sql_oci-src.lst sql_oci-ali.lst sql_oci-src.aux
860 rm -f amf-src.lst amf-ali.lst amf-src.aux
861 rm -f amf_dd-src.lst amf_dd-ali.lst amf_dd-src.aux
862 rm -f amf_uml-src.lst amf_uml-ali.lst amf_uml-src.aux
[all …]
/dports/biology/infernal/infernal-1.1.3/src/
H A Ddisplay.c160 memset(ali->cstr, ' ', ali->len); in CreateFancyAli()
161 memset(ali->cseq, ' ', ali->len); in CreateFancyAli()
162 memset(ali->mid, ' ', ali->len); in CreateFancyAli()
413 ali->cstr[ali->len] = '\0'; in CreateFancyAli()
414 ali->cseq[ali->len] = '\0'; in CreateFancyAli()
415 ali->mid[ali->len] = '\0'; in CreateFancyAli()
416 ali->top[ali->len] = '\0'; in CreateFancyAli()
417 ali->aseq[ali->len] = '\0'; in CreateFancyAli()
419 ali->pcode[ali->len] = '\0'; in CreateFancyAli()
431 if (ali->scoord[pos] != 0) ali->sqto = ali->scoord[pos]; in CreateFancyAli()
[all …]
/dports/biology/wise/wise2.4.1/src/HMMer2/
H A Dtophits.c114 ali->rfline = ali->csline = ali->model = ali->mline = ali->aseq = NULL; in AllocFancyAli()
115 ali->query = ali->target = NULL; in AllocFancyAli()
116 ali->sqfrom = ali->sqto = 0; in AllocFancyAli()
123 if (ali->rfline != NULL) free(ali->rfline); in FreeFancyAli()
124 if (ali->csline != NULL) free(ali->csline); in FreeFancyAli()
125 if (ali->model != NULL) free(ali->model); in FreeFancyAli()
126 if (ali->mline != NULL) free(ali->mline); in FreeFancyAli()
127 if (ali->aseq != NULL) free(ali->aseq); in FreeFancyAli()
128 if (ali->query != NULL) free(ali->query); in FreeFancyAli()
129 if (ali->target != NULL) free(ali->target); in FreeFancyAli()
[all …]
H A Dtrace.c623 ali->rfline = NULL; in CreateFancyAli()
624 ali->csline = NULL; in CreateFancyAli()
697 ali->model[tpos] = tolower(ali->model[tpos]); in CreateFancyAli()
702 ali->mline[tpos] = tolower(ali->mline[tpos]); in CreateFancyAli()
705 ali->mline[tpos] = '+'; in CreateFancyAli()
715 ali->model[tpos] = tolower(ali->model[tpos]); in CreateFancyAli()
722 ali->mline[tpos] = '+'; in CreateFancyAli()
731 ali->len = tpos; in CreateFancyAli()
734 ali->model[tpos] = '\0'; in CreateFancyAli()
737 return ali; in CreateFancyAli()
[all …]
/dports/mail/mailutils/mailutils-3.13/mh/tests/
H A Dali.at17 AT_BANNER(ali)
25 ali -a ./mh_aliases devel
42 MH_CHECK([ali: file inlcusion],[ali02 ali-include],[
56 MH_CHECK([ali: recursive inlcusion],[ali03 ali-include-recursive],[
77 MH_CHECK([ali: group name],[ali04 ali-group-name],[
87 MH_CHECK([ali: group id],[ali05 ali-group-id ali-gid],[
100 MH_CHECK([ali: everybody],[ali06 ali-everybody],[
111 MH_CHECK([ali: executable file inlcusion],[ali02 ali-xinclude],[
115 chmod +x Mail/ali.sh
118 <ali.sh
[all …]
/dports/mail/im/im-153/IM/
H A DAlias.pm40 my $ali;
42 foreach $ali (@news) {
43 $ali = expand_path($ali);
44 if (-r $ali) {
59 $ali = expand_path($ali);
61 if ($MAIL_ALIAS_HASH{$ali}) {
66 unless (open(ALIAS, "<$ali")) {
72 $MAIL_ALIAS_HASH{$ali} = 1;
163 my $ali;
166 foreach $ali (@aliases) {
[all …]
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/src/hmmer2/
H A Dtophits.cpp111 ali->rfline = ali->csline = ali->model = ali->mline = ali->aseq = NULL; in AllocFancyAli()
112 ali->query = ali->target = NULL; in AllocFancyAli()
113 ali->sqfrom = ali->sqto = 0; in AllocFancyAli()
120 if (ali->rfline != NULL) free(ali->rfline); in FreeFancyAli()
121 if (ali->csline != NULL) free(ali->csline); in FreeFancyAli()
122 if (ali->model != NULL) free(ali->model); in FreeFancyAli()
123 if (ali->mline != NULL) free(ali->mline); in FreeFancyAli()
124 if (ali->aseq != NULL) free(ali->aseq); in FreeFancyAli()
125 if (ali->query != NULL) free(ali->query); in FreeFancyAli()
126 if (ali->target != NULL) free(ali->target); in FreeFancyAli()
[all …]
/dports/devel/agar/agar-1.5.0/ada-gui/
H A DMakefile148 agar-gui-colors.ali agar-gui-draw.ali agar-gui-pixelformat.ali \
149 agar-gui-point.ali agar-gui-rect.ali agar-gui-style.ali agar-gui-surface.ali \
150 agar-gui-text.ali agar-gui-types.ali agar-gui-unit.ali agar-gui-view.ali \
151 agar-gui-widget-box.ali agar-gui-widget-button.ali agar-gui-widget-checkbox.ali \
152 agar-gui-widget-combo.ali agar-gui-widget-console.ali \
155 agar-gui-widget-graph.ali agar-gui-widget-hbox.ali agar-gui-widget-hsvpal.ali \
156 agar-gui-widget-icon.ali agar-gui-widget-label.ali agar-gui-widget-menu.ali \
162 agar-gui-widget-socket.ali agar-gui-widget-table.ali \
164 agar-gui-widget-tlist.ali agar-gui-widget-toolbar.ali \
165 agar-gui-widget-ucombo.ali agar-gui-widget-vbox.ali agar-gui-widget.ali \
[all …]
/dports/www/trafficserver/trafficserver-9.1.1/src/tscore/
H A Dtest_atomic.cc82 int ali; in init_data() local
86 for (ali = 0; ali < MAX_ATOMIC_LISTS; ali++) in init_data()
89 for (ali = 0; ali < MAX_ATOMIC_LISTS; ali++) { in init_data()
92 items[ali + j] = plistItem; in init_data()
93 plistItem->data1 = ali + j; in init_data()
94 plistItem->data2 = ali + rand(); in init_data()
97 plistItem->data4 = ali + j + rand(); in init_data()
179 int ali; in main() local
183 for (ali = 0; ali < MAX_ALIST_TEST; ali++) { in main()
184 ink_atomiclist_init(&al[ali], "foo", 0); in main()
[all …]
/dports/devel/agar/agar-1.5.0/ada-demos/
H A DMakefile6 demo.ali demo.o keyevent keyevent.ali keyevent.o keyevent_callbacks.ali \
7 keyevent_callbacks.o slider slider.ali slider.o slider_callbacks.ali \
157 demo.ali:\
162 demo.ali
165 ada-bind ada-link keyevent.ald keyevent.ali keyevent_callbacks.ali demo.ali
174 keyevent.ali
203 ada-bind ada-link slider.ald slider.ali slider_callbacks.ali demo.ali
212 slider.ali
222 ada-bind ada-link winicon.ald winicon.ali winicon_callbacks.ali demo.ali
231 winicon.ali
[all …]
/dports/lang/gcc9-aux/bootstrap/lib/gcc/x86_64-aux-dragonfly5.5/9.1.0/adalib/
H A Dg-strspl.ali30 W ada%s ada.ads ada.ali
31 Z ada.exceptions%s a-except.adb a-except.ali
33 Z ada.streams%s a-stream.adb a-stream.ali
34 W ada.strings%s a-string.ads a-string.ali
36 Z ada.tags%s a-tags.adb a-tags.ali
38 W gnat%s gnat.ads gnat.ali
40 Z system%s system.ads system.ali
50 W ada%s ada.ads ada.ali
56 Z ada.tags%s a-tags.adb a-tags.ali
57 W gnat%s gnat.ads gnat.ali
[all …]
H A Dg-wistsp.ali30 W ada%s ada.ads ada.ali
31 Z ada.exceptions%s a-except.adb a-except.ali
33 Z ada.streams%s a-stream.adb a-stream.ali
34 W ada.strings%s a-string.ads a-string.ali
36 Z ada.tags%s a-tags.adb a-tags.ali
38 W gnat%s gnat.ads gnat.ali
40 Z system%s system.ads system.ali
50 W ada%s ada.ads ada.ali
56 Z ada.tags%s a-tags.adb a-tags.ali
57 W gnat%s gnat.ads gnat.ali
[all …]
H A Dg-zstspl.ali30 W ada%s ada.ads ada.ali
31 Z ada.exceptions%s a-except.adb a-except.ali
33 Z ada.streams%s a-stream.adb a-stream.ali
34 W ada.strings%s a-string.ads a-string.ali
36 Z ada.tags%s a-tags.adb a-tags.ali
38 W gnat%s gnat.ads gnat.ali
40 Z system%s system.ads system.ali
50 W ada%s ada.ads ada.ali
56 Z ada.tags%s a-tags.adb a-tags.ali
57 W gnat%s gnat.ads gnat.ali
[all …]
H A Dg-sptavs.ali35 Z ada.exceptions%s a-except.adb a-except.ali
36 Z ada.streams%s a-stream.adb a-stream.ali
37 Z ada.tags%s a-tags.adb a-tags.ali
38 W gnat.spitbol%s g-spitbo.adb g-spitbo.ali
39 Z system%s system.ads system.ali
43 Z system.soft_links%s s-soflin.adb s-soflin.ali
52 Z ada.exceptions%s a-except.adb a-except.ali
53 Z ada.streams%s a-stream.adb a-stream.ali
54 Z ada.tags%s a-tags.adb a-tags.ali
55 W gnat.spitbol%s g-spitbo.adb g-spitbo.ali
[all …]
/dports/lang/gcc6-aux/bootstrap/lib/gcc/x86_64-aux-dragonfly4.1/5.1.0/adalib/
H A Dg-strspl.ali29 W ada%s ada.ads ada.ali
30 W ada.exceptions%s a-except.adb a-except.ali
32 W ada.streams%s a-stream.adb a-stream.ali
33 W ada.strings%s a-string.ads a-string.ali
35 W ada.tags%s a-tags.adb a-tags.ali
37 W gnat%s gnat.ads gnat.ali
39 W system%s system.ads system.ali
49 W ada%s ada.ads ada.ali
55 W ada.tags%s a-tags.adb a-tags.ali
56 W gnat%s gnat.ads gnat.ali
[all …]
H A Dg-zstspl.ali29 W ada%s ada.ads ada.ali
30 W ada.exceptions%s a-except.adb a-except.ali
32 W ada.streams%s a-stream.adb a-stream.ali
33 W ada.strings%s a-string.ads a-string.ali
35 W ada.tags%s a-tags.adb a-tags.ali
37 W gnat%s gnat.ads gnat.ali
39 W system%s system.ads system.ali
49 W ada%s ada.ads ada.ali
55 W ada.tags%s a-tags.adb a-tags.ali
56 W gnat%s gnat.ads gnat.ali
[all …]
H A Dg-wistsp.ali29 W ada%s ada.ads ada.ali
30 W ada.exceptions%s a-except.adb a-except.ali
32 W ada.streams%s a-stream.adb a-stream.ali
33 W ada.strings%s a-string.ads a-string.ali
35 W ada.tags%s a-tags.adb a-tags.ali
37 W gnat%s gnat.ads gnat.ali
39 W system%s system.ads system.ali
49 W ada%s ada.ads ada.ali
55 W ada.tags%s a-tags.adb a-tags.ali
56 W gnat%s gnat.ads gnat.ali
[all …]
H A Dg-sptavs.ali34 W ada.exceptions%s a-except.adb a-except.ali
35 W ada.streams%s a-stream.adb a-stream.ali
36 W ada.tags%s a-tags.adb a-tags.ali
37 W gnat.spitbol%s g-spitbo.adb g-spitbo.ali
38 W system%s system.ads system.ali
42 W system.soft_links%s s-soflin.adb s-soflin.ali
51 W ada.exceptions%s a-except.adb a-except.ali
52 W ada.streams%s a-stream.adb a-stream.ali
53 W ada.tags%s a-tags.adb a-tags.ali
54 W gnat.spitbol%s g-spitbo.adb g-spitbo.ali
[all …]
/dports/textproc/uncrustify/uncrustify-uncrustify-0.74.0/src/
H A Dalign_stack.cpp196 chunk_t *ali = start; in Add() local
206 ali = tmp_prev; in Add()
212 ali = tmp_prev; in Add()
227 ali = tmp_prev; in Add()
280 if (ref != ali) in Add()
284 chunk_t *tmp = ali; in Add()
308 ali->align.ref = ref; in Add()
309 ali->align.start = start; in Add()
317 …__func__, __LINE__, ali->text(), start->text(), ali->orig_line, ali->column, get_token_name(ali->t… in Add()
322 …__func__, __LINE__, ali->text(), ali->orig_line, ali->column, get_token_name(ali->type), ali->leve… in Add()
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/pairwise_sequence_alignment/
H A Dalignment_local.cpp11 Align<String<char> > ali; in main() local
12 resize(rows(ali), 2); in main()
13 assignSource(row(ali, 0), "aphilologicaltheorem"); in main()
14 assignSource(row(ali, 1), "bizarreamphibology"); in main()
18 …std::cout << "Score = " << localAlignment(ali, Score<int>(3, -3, -2, -2), DynamicGaps()) << std::e… in main()
19 std::cout << ali; in main()
20 …::cout << "Aligns Seq1[" << clippedBeginPosition(row(ali, 0)) << ":" << (clippedEndPosition(row(al… in main()
21 …td::cout << " and Seq2[" << clippedBeginPosition(row(ali, 1)) << ":" << (clippedEndPosition(row(a… in main()
/dports/devel/agar/agar-1.5.0/ada-core/
H A DMakefile8 agar-core-data_source.ali agar-core-data_source.o agar-core-database.ali \
9 agar-core-database.o agar-core-dso.ali agar-core-dso.o agar-core-error.ali \
10 agar-core-error.o agar-core-event.ali agar-core-event.o agar-core-init.ali \
138 agar-core.ali
153 agar-core.ali agar-core-thin.ali
160 agar-core.ali agar-core-thin.ali
167 agar-core.ali
175 agar-core.ali agar-core-thin.ali
182 agar-core.ali agar-core-thin.ali
189 agar-core.ali agar-core-thin.ali agar-core-data_source.ali
[all …]
/dports/biology/seqan1/seqan-1.3.1/demos/tutorial/alignments/
H A Dalignment_pairwise_local.cpp10 Align< String<char> > ali; in main() local
11 appendValue(rows(ali), "aphilologicaltheorem"); in main()
12 appendValue(rows(ali), "bizarreamphibology"); in main()
15 …::std::cout << "Score = " << localAlignment(ali, Score<int>(3,-3,-2, -2), SmithWaterman()) << ::st… in main()
16 ::std::cout << ali; in main()
17 …::cout << "Aligns Seq1[" << clippedBeginPosition(row(ali, 0)) << ":" << (clippedEndPosition(row(al… in main()
18 …td::cout << " and Seq2[" << clippedBeginPosition(row(ali, 1)) << ":" << (clippedEndPosition(row(a… in main()
/dports/science/py-ase/ase-3.22.0/ase/test/vibrations/
H A Dtest_profeta_albrecht.py24 pri, ali = 0, 0
35 ali = al.get_absolute_intensities(omega=om, gamma=gam)[-1]
36 print('pri, ali', pri, ali)
37 assert pri == pytest.approx(ali, 1e-2)
44 ali = al.get_absolute_intensities(omega=om, gamma=gam)[-1]
45 print('pri, ali', pri, ali)
46 assert pri == pytest.approx(ali, 1e-2)
53 ali = al.get_absolute_intensities(omega=om, gamma=gam)[-1]
54 print('pri, ali', pri, ali)
55 assert pri == pytest.approx(ali, 1e-2)

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