Searched refs:alias_starts (Results 1 – 8 of 8) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | iit-read-univ.h | 36 Univ_IIT_altlocp (Univcoord_T **alias_starts, Univcoord_T **alias_ends, T chromosome_iit, T altscaf…
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H A D | iit-read-univ.c | 260 Univ_IIT_altlocp (Univcoord_T **alias_starts, Univcoord_T **alias_ends, T chromosome_iit, T altscaf… in Univ_IIT_altlocp() argument 275 *alias_starts = (Univcoord_T *) CALLOC(nchromosomes+1,sizeof(Univcoord_T)); in Univ_IIT_altlocp() 314 (*alias_starts)[chri+1] = genomicstart; in Univ_IIT_altlocp() 323 (*alias_starts)[chri+1] = genomicstart; in Univ_IIT_altlocp()
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H A D | gsnap.c | 213 static Univcoord_T *alias_starts = NULL; variable 3058 alias_starts = (Univcoord_T *) CALLOC((*nchromosomes)+1,sizeof(Univcoord_T)); in chromosome_iit_setup() 3063 altlocp = Univ_IIT_altlocp(&alias_starts,&alias_ends,chromosome_iit,altscaffold_iit); in chromosome_iit_setup() 3512 favor_multiexon_p,subopt_levels,circularp,altlocp,alias_starts,alias_ends, in worker_setup() 3611 FREE(alias_starts); in worker_cleanup()
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H A D | stage3hr.c | 229 static Univcoord_T *alias_starts; variable 318 alias_starts = alias_starts_in; in Stage3hr_setup() 7515 } else if (alias_starts[x->chrnum] < alias_starts[y->chrnum]) { in duplicate_sort_cmp() 7517 } else if (alias_starts[y->chrnum] < alias_starts[x->chrnum]) { in duplicate_sort_cmp() 7528 if (y->genomicend >= alias_starts[x->chrnum] && in duplicate_sort_cmp() 7537 alias_starts[y->chrnum] <= x->genomicend) { in duplicate_sort_cmp() 7625 alias_starts[y->chrnum] <= x->genomicend) { in duplicate_equiv_cmp() 8148 } else if (alias_starts[x->chrnum] < alias_starts[y->chrnum]) { in hit_sort_cmp() 8150 } else if (alias_starts[y->chrnum] < alias_starts[x->chrnum]) { in hit_sort_cmp() 8170 alias_starts[y->chrnum] <= x->genomicend) { in hit_sort_cmp() [all …]
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H A D | gmap.c | 204 static Univcoord_T *alias_starts = NULL; variable 6680 alias_starts = (Univcoord_T *) CALLOC(nchromosomes+1,sizeof(Univcoord_T)); in main() 6685 altlocp = Univ_IIT_altlocp(&alias_starts,&alias_ends,chromosome_iit,altscaffold_iit); in main() 6775 alias_starts = (Univcoord_T *) CALLOC(1,sizeof(Univcoord_T)); in main() 6790 alias_starts = (Univcoord_T *) CALLOC(1,sizeof(Univcoord_T)); in main() 7027 donor_typeint,acceptor_typeint,splicesites,circularp,altlocp,alias_starts,alias_ends, in main() 7283 FREE(alias_starts); in main()
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H A D | stage3.c | 330 static Univcoord_T *alias_starts; variable 391 alias_starts = alias_starts_in; in Stage3_setup() 775 *alias_start = alias_starts[this->chrnum]; in Stage3_altloc_chr()
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/dports/databases/xtrabackup8/percona-xtrabackup-8.0.14/sql/dd/info_schema/ |
H A D | show.cc | 1223 static const LEX_CSTRING alias_starts = {STRING_WITH_LEN("Starts")}; in build_show_events_query() local 1278 sub_query.add_select_item(field_starts, alias_starts) || in build_show_events_query()
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/dports/biology/gmap/gmap-2020-09-12/ |
H A D | ChangeLog | 4031 alias_starts, and alias_ends. 4302 * gmap.c: Creating altlocp, alias_starts, and alias_ends for user-provided
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