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Searched refs:alias_starts (Results 1 – 8 of 8) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Diit-read-univ.h36 Univ_IIT_altlocp (Univcoord_T **alias_starts, Univcoord_T **alias_ends, T chromosome_iit, T altscaf…
H A Diit-read-univ.c260 Univ_IIT_altlocp (Univcoord_T **alias_starts, Univcoord_T **alias_ends, T chromosome_iit, T altscaf… in Univ_IIT_altlocp() argument
275 *alias_starts = (Univcoord_T *) CALLOC(nchromosomes+1,sizeof(Univcoord_T)); in Univ_IIT_altlocp()
314 (*alias_starts)[chri+1] = genomicstart; in Univ_IIT_altlocp()
323 (*alias_starts)[chri+1] = genomicstart; in Univ_IIT_altlocp()
H A Dgsnap.c213 static Univcoord_T *alias_starts = NULL; variable
3058 alias_starts = (Univcoord_T *) CALLOC((*nchromosomes)+1,sizeof(Univcoord_T)); in chromosome_iit_setup()
3063 altlocp = Univ_IIT_altlocp(&alias_starts,&alias_ends,chromosome_iit,altscaffold_iit); in chromosome_iit_setup()
3512 favor_multiexon_p,subopt_levels,circularp,altlocp,alias_starts,alias_ends, in worker_setup()
3611 FREE(alias_starts); in worker_cleanup()
H A Dstage3hr.c229 static Univcoord_T *alias_starts; variable
318 alias_starts = alias_starts_in; in Stage3hr_setup()
7515 } else if (alias_starts[x->chrnum] < alias_starts[y->chrnum]) { in duplicate_sort_cmp()
7517 } else if (alias_starts[y->chrnum] < alias_starts[x->chrnum]) { in duplicate_sort_cmp()
7528 if (y->genomicend >= alias_starts[x->chrnum] && in duplicate_sort_cmp()
7537 alias_starts[y->chrnum] <= x->genomicend) { in duplicate_sort_cmp()
7625 alias_starts[y->chrnum] <= x->genomicend) { in duplicate_equiv_cmp()
8148 } else if (alias_starts[x->chrnum] < alias_starts[y->chrnum]) { in hit_sort_cmp()
8150 } else if (alias_starts[y->chrnum] < alias_starts[x->chrnum]) { in hit_sort_cmp()
8170 alias_starts[y->chrnum] <= x->genomicend) { in hit_sort_cmp()
[all …]
H A Dgmap.c204 static Univcoord_T *alias_starts = NULL; variable
6680 alias_starts = (Univcoord_T *) CALLOC(nchromosomes+1,sizeof(Univcoord_T)); in main()
6685 altlocp = Univ_IIT_altlocp(&alias_starts,&alias_ends,chromosome_iit,altscaffold_iit); in main()
6775 alias_starts = (Univcoord_T *) CALLOC(1,sizeof(Univcoord_T)); in main()
6790 alias_starts = (Univcoord_T *) CALLOC(1,sizeof(Univcoord_T)); in main()
7027 donor_typeint,acceptor_typeint,splicesites,circularp,altlocp,alias_starts,alias_ends, in main()
7283 FREE(alias_starts); in main()
H A Dstage3.c330 static Univcoord_T *alias_starts; variable
391 alias_starts = alias_starts_in; in Stage3_setup()
775 *alias_start = alias_starts[this->chrnum]; in Stage3_altloc_chr()
/dports/databases/xtrabackup8/percona-xtrabackup-8.0.14/sql/dd/info_schema/
H A Dshow.cc1223 static const LEX_CSTRING alias_starts = {STRING_WITH_LEN("Starts")}; in build_show_events_query() local
1278 sub_query.add_select_item(field_starts, alias_starts) || in build_show_events_query()
/dports/biology/gmap/gmap-2020-09-12/
H A DChangeLog4031 alias_starts, and alias_ends.
4302 * gmap.c: Creating altlocp, alias_starts, and alias_ends for user-provided