Searched refs:all_stage2results (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | stage2.c | 6235 Stage2_filter_unique (List_T all_stage2results) { in Stage2_filter_unique() argument
6244 n = List_length(all_stage2results); in Stage2_filter_unique()
6252 for (p = all_stage2results; p != NULL; p = List_next(p)) { in Stage2_filter_unique()
6262 array = (Stage2_T *) List_to_array(all_stage2results,NULL); in Stage2_filter_unique()
6263 List_free(&all_stage2results); in Stage2_filter_unique()
6558 List_T all_stage2results = NULL, all_paths, all_ends, all_starts, path, pairs, p; in Stage2_compute() local
7009 … all_stage2results = List_push(all_stage2results,(void *) Stage2_new(middle,all_starts,all_ends)); in Stage2_compute()
7059 all_stage2results = Stage2_filter_unique(all_stage2results); in Stage2_compute()
7060 debug0(printf("Done with stage2. Returning %d results\n",List_length(all_stage2results))); in Stage2_compute()
7061 return all_stage2results; in Stage2_compute()
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| H A D | gmap.c | 1165 List_T all_stage2results, all_stage3middle_results = NULL, p; in update_stage3middle_list() local
1207 all_stage2results = Stage2_compute(Sequence_trimpointer(queryseq),Sequence_trimpointer(queryuc), in update_stage3middle_list()
1218 for (p = all_stage2results; p != NULL; p = List_next(p)) { in update_stage3middle_list()
1238 List_free(&all_stage2results); in update_stage3middle_list()
1268 List_T all_stage2results, p; in update_stage3list() local
1321 all_stage2results = Stage2_compute(Sequence_trimpointer(queryseq),Sequence_trimpointer(queryuc), in update_stage3list()
1332 for (p = all_stage2results; p != NULL; p = List_next(p)) { in update_stage3list()
1386 List_free(&all_stage2results); in update_stage3list()
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