Home
last modified time | relevance | path

Searched refs:ambig_prob_3 (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dpath-solve.c159 double ambig_prob_3; member
201 new->ambig_prob_3 = old->ambig_prob_3; in Path_copy_5()
209 Path_copy_3 (T old, bool splice3p, Splicetype_T splicetype3, double ambig_prob_3, in Path_copy_3() argument
230 new->ambig_prob_3 = ambig_prob_3; in Path_copy_3()
467 new->ambig_prob_3 = 0.0; in Path_new_for_qstart_extension()
1426 double ambig_prob_3, Intlistpool_T intlistpool, in Path_new_for_qend_extension() argument
1446 new->ambig_prob_3 = ambig_prob_3; in Path_new_for_qend_extension()
1470 double *ambig_probs_3, ambig_prob_3; in attach_qend_diagonal() local
1533 ambig_prob_3 = ambig_probs_3[i]; in attach_qend_diagonal()
2807 printf("Combined ambig_prob_3 %f\n",qend_path->ambig_prob_3); in solve_via_segments_genome()
[all …]
H A Dstage3hr.h328 bool splice3p_in, Splicetype_T splicetype3, double ambig_prob_3,
H A Dstage3.c11573 *ambig_prob_3 = 0.0; in build_path_end3()
11582 *ambig_prob_3 = 0.0; in build_path_end3()
14053 *ambig_prob_3 = 0.0; in path_compute_end3()
14675 *ambig_prob_3 = max_prob_3; in trim_novel_spliceends()
14689 *ambig_prob_3 = max_prob_3_mm; in trim_novel_spliceends()
15124 *ambig_prob_3 = max_prob_3; in trim_novel_spliceends()
15160 *ambig_prob_3 = max_prob_3; in trim_novel_spliceends()
15179 *ambig_prob_3 = max_prob_3; in trim_novel_spliceends()
15232 *ambig_prob_3 = max_prob_3_mm; in trim_novel_spliceends()
15572 &(*ambig_prob_5),&(*ambig_prob_3), in path_trim()
[all …]
H A Dgmap.c1280 double ambig_prob_5, ambig_prob_3; in update_stage3list() local
1343 &ambig_prob_5,&ambig_prob_3, in update_stage3list()
1458 double ambig_prob_5, ambig_prob_3; in stage3_from_usersegment() local
1520 &ambig_prob_5,&ambig_prob_3, in stage3_from_usersegment()
1789 double ambig_prob_5, ambig_prob_3; in stage3_from_gregions() local
1916 &ambig_prob_5,&ambig_prob_3, in stage3_from_gregions()
H A Dstage3hr.c4312 bool splice3p_in, Splicetype_T splicetype3, double ambig_prob_3, in Stage3end_new_substrings() argument
4434 /*ambig_prob_queryend*/ambig_prob_3,sensedir)) == NULL) { in Stage3end_new_substrings()
4537 /*ambig_prob_querystart*/ambig_prob_3, in Stage3end_new_substrings()
4832 prob_total += ambig_prob_3; in Stage3end_new_substrings()
/dports/biology/gmap/gmap-2020-09-12/
H A DChangeLog6697 * stage3.h: Stage3_compute now returns ambig_prob_5 and ambig_prob_3