Searched refs:ambig_prob_3 (Results 1 – 6 of 6) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | path-solve.c | 159 double ambig_prob_3; member 201 new->ambig_prob_3 = old->ambig_prob_3; in Path_copy_5() 209 Path_copy_3 (T old, bool splice3p, Splicetype_T splicetype3, double ambig_prob_3, in Path_copy_3() argument 230 new->ambig_prob_3 = ambig_prob_3; in Path_copy_3() 467 new->ambig_prob_3 = 0.0; in Path_new_for_qstart_extension() 1426 double ambig_prob_3, Intlistpool_T intlistpool, in Path_new_for_qend_extension() argument 1446 new->ambig_prob_3 = ambig_prob_3; in Path_new_for_qend_extension() 1470 double *ambig_probs_3, ambig_prob_3; in attach_qend_diagonal() local 1533 ambig_prob_3 = ambig_probs_3[i]; in attach_qend_diagonal() 2807 printf("Combined ambig_prob_3 %f\n",qend_path->ambig_prob_3); in solve_via_segments_genome() [all …]
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H A D | stage3hr.h | 328 bool splice3p_in, Splicetype_T splicetype3, double ambig_prob_3,
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H A D | stage3.c | 11573 *ambig_prob_3 = 0.0; in build_path_end3() 11582 *ambig_prob_3 = 0.0; in build_path_end3() 14053 *ambig_prob_3 = 0.0; in path_compute_end3() 14675 *ambig_prob_3 = max_prob_3; in trim_novel_spliceends() 14689 *ambig_prob_3 = max_prob_3_mm; in trim_novel_spliceends() 15124 *ambig_prob_3 = max_prob_3; in trim_novel_spliceends() 15160 *ambig_prob_3 = max_prob_3; in trim_novel_spliceends() 15179 *ambig_prob_3 = max_prob_3; in trim_novel_spliceends() 15232 *ambig_prob_3 = max_prob_3_mm; in trim_novel_spliceends() 15572 &(*ambig_prob_5),&(*ambig_prob_3), in path_trim() [all …]
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H A D | gmap.c | 1280 double ambig_prob_5, ambig_prob_3; in update_stage3list() local 1343 &ambig_prob_5,&ambig_prob_3, in update_stage3list() 1458 double ambig_prob_5, ambig_prob_3; in stage3_from_usersegment() local 1520 &ambig_prob_5,&ambig_prob_3, in stage3_from_usersegment() 1789 double ambig_prob_5, ambig_prob_3; in stage3_from_gregions() local 1916 &ambig_prob_5,&ambig_prob_3, in stage3_from_gregions()
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H A D | stage3hr.c | 4312 bool splice3p_in, Splicetype_T splicetype3, double ambig_prob_3, in Stage3end_new_substrings() argument 4434 /*ambig_prob_queryend*/ambig_prob_3,sensedir)) == NULL) { in Stage3end_new_substrings() 4537 /*ambig_prob_querystart*/ambig_prob_3, in Stage3end_new_substrings() 4832 prob_total += ambig_prob_3; in Stage3end_new_substrings()
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/dports/biology/gmap/gmap-2020-09-12/ |
H A D | ChangeLog | 6697 * stage3.h: Stage3_compute now returns ambig_prob_5 and ambig_prob_3
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