Home
last modified time | relevance | path

Searched refs:appendix1 (Results 1 – 21 of 21) sorted by relevance

/dports/editors/the/THE-3.3RC4/
H A Dmakehv.rex2 …' commset 'commsos=' commsos 'query=' query 'glossary=' glossary 'appendix1=' appendix1 'appendix2…
14 appendix1 = Strip( appendix1 )
H A Dmakehtml.rex2 …' commset 'commsos=' commsos 'query=' query 'glossary=' glossary 'appendix1=' appendix1 'appendix2…
14 appendix1 = Strip( appendix1 )
H A Dman2html.rex21 When section = 'APPENDIX1' Then Call appendix1 infile tocfile 'Appendix 1'
579 appendix1: Procedure Expose html_ext
H A Dman2hv.rex24 When section = 'APPENDIX1' Then Call appendix1 infile tocfile 'Appendix 1'
595 appendix1: Procedure Expose html_ext ?port ?slash ?os
/dports/biology/subread/subread-2.0.2-source/src/
H A Dhashtable.c259 HashTable * res = tab -> appendix1; in StringTableReverse_Run()
265 void * oriap1 = ori -> appendix1; in StringTableReverse()
266 ori -> appendix1 = res; in StringTableReverse()
269 ori -> appendix1 = oriap1; in StringTableReverse()
298 hashTable->appendix1=NULL; in HashTableCreate()
1026 ArrayList * dsta = k2int_tab -> appendix1; in HashTableSortedIndexes_copy_idx()
1031 void ** appdx = me -> appendix1; in HashTableSortedIndexes_cmp_idx()
1049 ret -> appendix1 = appx; in HashTableSortedIndexes()
H A Dhashtable.h40 void * appendix1; member
54 void * appendix1; member
H A Dtx-unique.c310 txunique_context_t * context = tab -> appendix1; in txunique_process_write_gene()
328 txunique_context_t * context = tab -> appendix1; in txunique_process_gene()
358 context -> gene_table -> appendix1 = context; in txunique_find_unique_bases()
371 context -> gene_table -> appendix1 = context; in txunique_write_output_file()
H A Dgene-value-index.c58 if(offsets -> appendix1 && offsets -> appendix2){ in is_offset_in_chro()
59 gene_offset_t * chros = offsets -> appendix1; in is_offset_in_chro()
362 if(!((char *)indel_table->appendix1)[mask_pos]) return 0; in find_all_indels()
365 if(!(((char *)indel_table->appendix1)[mask_pos] & (1<<mask_off))) in find_all_indels()
385 if(!((char *)indel_table->appendix1)[mask_pos]) continue; in find_all_indels()
388 if(!(((char *)indel_table->appendix1)[mask_pos] & (1<<mask_off))) in find_all_indels()
H A Dinput-files.h169 void * appendix1; member
315 …irer, int thread_no, char * bin1, char * bin2), char * tmp_path, void * appendix1, int long_read_m…
H A DreadSummary.c2084 char *bin = tab -> appendix1; in scRNA_sample_SamBam_writers_add_header()
4395 void ** app1 = structs -> appendix1; in scRNA_do_one_batch_UMI_merge_one_cell()
4516 void ** app1 = structs -> appendix1; in scRNA_do_one_batch_UMI_merge_one_step()
4553 void ** app1 = me -> appendix1; in scRNA_do_one_batch_tab_to_struct_list_compare()
4604 FILE * fp = me->appendix1; in scRNA_do_one_batch_write_UMIs()
4736 cell_gene_umi_list[x1] -> appendix1 = app1; in scRNA_do_one_batch()
5761 FILE * fp = me->appendix1; in scRNA_merged_write_nozero_geneids_WRT()
5780 no0genes -> appendix1 =fp; in scRNA_merged_write_nozero_geneids()
5890 void ** pnts = me -> appendix1; in scRNA_find_gene_to_umi_sortCompare()
5910 arr_genes -> appendix1 = pnts; in scRNA_find_gene_to_umi_sortByReads()
[all …]
H A Dcore-indel.c262 chromosome_event_t * event_space = tab -> appendix1 ; in anti_support_add_count()
321 ATconts[thread_no].result_tab -> appendix1 = event_space; in anti_supporting_read_scan()
859 if(indel_context -> event_entry_table->appendix1) in sort_junction_entry_table()
861 free(indel_context -> event_entry_table -> appendix1); in sort_junction_entry_table()
880 indel_context -> event_entry_table -> appendix1=NULL; in sort_junction_entry_table()
1171 global_context_t * global_context = tab->appendix1; in add_annotation_to_junctions()
1335 feature_sorting_table -> appendix1 = global_context; in load_known_junctions()
1421 if(event_table->appendix1) in put_new_event()
1423 mark_event_bitmap(event_table->appendix1, sides[0]); in put_new_event()
1433 if(event_table->appendix1) in search_event()
[all …]
H A Ddetection-calls.c214 ArrayList * merged_gene_list = tab -> appendix1; in DTCprocess_gene_tab()
392 genename_to_3int_table -> appendix1 = merged_gene_list; in DTCparse_GTF_and_Genome()
H A Dinput-files.c1531 int maximum_open_file = fp_table -> appendix1 - NULL; in get_temp_file_pointer()
1687 …event_table_ptr->appendix1 = realloc(event_table_ptr->appendix1 , sizeof(char *) * event_space_max… in add_cigar_indel_event()
1715 char * ins_seq_2 = malloc(-indels), ** app1_ptrptr = event_table_ptr->appendix1; in add_cigar_indel_event()
1726 char ** seq_tab = event_table->appendix1; in destroy_cigar_event_table()
1752 free(event_table->appendix1); in destroy_cigar_event_table()
1866 fp_table -> appendix1 = NULL + max_open_file * 2/ 3; in break_SAM_file()
1868 if(event_table!=NULL && event_table->appendix1==NULL) in break_SAM_file()
1870 event_table->appendix1 = malloc(sizeof(char *) * 100); in break_SAM_file()
2567 pairer -> appendix1 = appendix1; in SAM_pairer_create()
4639 SAM_pairer_context_t * pairer = tab -> appendix1; in SAM_pairer_finish_margins()
[all …]
H A DflattenAnnotations.c254 context -> gene_chro_strand_to_exons_table -> appendix1 = context; in flatAnno_do_anno_merge_and_write()
H A Dsubread.h307 void * appendix1; member
H A Dinput-blc.c816 ArrayList * cbclist = tab -> appendix1;
1068 sample_sheet_table -> appendix1 = sample_sheet_list;
H A Dcore-junction.c146 … config.do_long_del_detection)|| there_are_events_in_range(event_table->appendix1, read_head_abs_o… in search_events_to_front()
174 if(!check_event_bitmap( event_table->appendix1, potential_event_pos )) continue; in search_events_to_front()
4198 global_context -> translocation_result_table.entry_table -> appendix1 = ofp; in write_fusion_final_results()
4201 global_context -> inversion_result_table.entry_table -> appendix1 = ofp; in write_fusion_final_results()
4219 FILE * ofp = (FILE *)tab -> appendix1; in write_inversion_results_final()
4244 FILE * ofp = (FILE *)tab -> appendix1; in write_translocation_results_final()
H A DSNPCalling.c958 char ** seq_tab = (char **)parameters -> cigar_event_table-> appendix1; in process_snp_votes()
H A Dcore.c3985 HashTable * result_annot_chros = tab -> appendix1;
4005 anno_chros_tab -> appendix1 = chros_in_annot_using_index_names;
4009 index_chros_tab -> appendix1 = chros_in_index_using_annot_names;
/dports/biology/subread/subread-2.0.2-source/src/longread-one/
H A DLRMhashtable.h35 void * appendix1; member
H A DLRMhashtable.c102 hashTable->appendix1=NULL; in LRMHashTableCreate()