Searched refs:assemblyLength (Results 1 – 9 of 9) sorted by relevance
/dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/ |
H A D | assembly-statistics.c | 66 uint64_t assemblyLength; member 91 nl -> length, nl -> assemblyLength ) ); in ContigNext() 93 if ( nl -> l50 == 0 && nl -> length * 2 >= nl -> assemblyLength ) { in ContigNext() 97 nl -> l50, nl -> n50, nl -> length, nl -> assemblyLength ) ); in ContigNext() 101 .9 * nl -> assemblyLength <= nl -> length ) in ContigNext() 106 nl -> l90, nl -> n90, nl -> length, nl -> assemblyLength ) ); in ContigNext() 124 self -> assemblyLength += length; in ContigsAdd() 273 assert ( contigs . assemblyLength == contigs . length ); in CalculateNL() 281 ctx -> n = contigs . assemblyLength; in CalculateNL()
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/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_assembly/ |
H A D | ExtractAssemblyRegionTask.h | 36 ExtractAssemblyRegionTaskSettings(QString fileUrl, int assemblyLength, AssemblyObject *o) in ExtractAssemblyRegionTaskSettings() 38 …fileFormat(BaseDocumentFormats::UGENEDB), assemblyLength(assemblyLength), obj(o), addToProject(fal… in ExtractAssemblyRegionTaskSettings() 43 int assemblyLength; member
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H A D | ExportCoverageTask.cpp | 170 const qint64 assemblyLength = lengthAttribute.value; in run() local 171 SAFE_POINT_EXT(0 < assemblyLength, setError(tr("Assembly has zero length")), ); in run() 175 write(toByteArray(coverage, assemblyLength)); in run() 188 QByteArray ExportCoverageHistogramTask::toByteArray(int coverage, qint64 assemblyLength) const { in toByteArray() 192 SEPARATOR + QByteArray::number(assemblyLength) + in toByteArray() 193 … SEPARATOR + QByteArray::number((double)histogramData.value(coverage, 0) / assemblyLength) + "\n"; in toByteArray()
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H A D | ExtractAssemblyRegionDialog.cpp | 52 …regionSelector = new RegionSelector(this, settings->assemblyLength, false, nullptr, false, presets… in ExtractAssemblyRegionDialog()
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H A D | ExportCoverageTask.h | 132 QByteArray toByteArray(int coverage, qint64 assemblyLength) const;
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/dports/biology/sra-tools/sra-tools-2.11.0/test/sra-stat/ |
H A D | testAssemblyStatistics.cpp | 88 REQUIRE_EQ ( contigs . assemblyLength, ZERO ); in TEST_CASE() 95 REQUIRE_EQ ( contigs . assemblyLength, static_cast <uint64_t> ( 290 ) ); in TEST_CASE() 100 REQUIRE_EQ ( contigs . assemblyLength, static_cast <uint64_t> ( 290 ) ); in TEST_CASE() 120 REQUIRE_EQ ( contigs . assemblyLength, ZERO ); in TEST_CASE() 129 REQUIRE_EQ ( contigs . assemblyLength, static_cast <uint64_t> ( 305 ) ); in TEST_CASE() 134 REQUIRE_EQ ( contigs . assemblyLength, static_cast <uint64_t> ( 305 ) ); in TEST_CASE()
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/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/debug_messages_translation/ |
H A D | AssemblyMessageTranslator.cpp | 59 const qint64 assemblyLength = dbi->getMaxEndPos(assemblyId, os) + 1; in getTranslation() local 62 const U2Region wholeAssembly(0, assemblyLength); in getTranslation() 66 …QString result = QObject::tr(ASSEMBLY_LENGTH_LABEL) + QString::number(assemblyLength) + INFO_FEATU… in getTranslation()
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/dports/biology/ugene/ugene-40.1/src/plugins/dbi_bam/src/ |
H A D | SamtoolsBasedDbi.cpp | 643 qint64 assemblyLength = getMaxEndPos(assemblyId, os) + 1; in getCorrectRegion() local 648 U2Region outOfRangeRegion(assemblyLength + 1, 0); in getCorrectRegion() 652 } else if (startPos >= assemblyLength) { in getCorrectRegion() 657 } else if (endPos >= assemblyLength) { in getCorrectRegion() 658 endPos = assemblyLength - 1; in getCorrectRegion()
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/dports/biology/ugene/ugene-40.1/src/plugins/GUITestBase/src/tests/regression_scenarios/ |
H A D | GTTestsRegressionScenarios_1001_2000.cpp | 4099 const int assemblyLength = GTUtilsAssemblyBrowser::getLength(os); in GUI_TEST_CLASS_DEFINITION() local 4101 …(expectedLength == assemblyLength, QString("An unexpected assembly length: expect %1, got %2").ar… in GUI_TEST_CLASS_DEFINITION()
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