1 /**
2  * UGENE - Integrated Bioinformatics Tools.
3  * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru>
4  * http://ugene.net
5  *
6  * This program is free software; you can redistribute it and/or
7  * modify it under the terms of the GNU General Public License
8  * as published by the Free Software Foundation; either version 2
9  * of the License, or (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with this program; if not, write to the Free Software
18  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
19  * MA 02110-1301, USA.
20  */
21 
22 #ifndef _U2_EXTRACT_ASSEMBLY_TASK_H_
23 #define _U2_EXTRACT_ASSEMBLY_TASK_H_
24 
25 #include <U2Core/BaseDocumentFormats.h>
26 #include <U2Core/Task.h>
27 #include <U2Core/U2Region.h>
28 
29 namespace U2 {
30 
31 class AssemblyObject;
32 class DocumentProviderTask;
33 class ExtractAssemblyRegionTask;
34 
35 struct ExtractAssemblyRegionTaskSettings {
ExtractAssemblyRegionTaskSettingsExtractAssemblyRegionTaskSettings36     ExtractAssemblyRegionTaskSettings(QString fileUrl, int assemblyLength, AssemblyObject *o)
37         : fileUrl(fileUrl), regionToExtract(U2_REGION_MAX),
38           fileFormat(BaseDocumentFormats::UGENEDB), assemblyLength(assemblyLength), obj(o), addToProject(false) {
39     }
40     QString fileUrl;
41     U2Region regionToExtract;
42     DocumentFormatId fileFormat;
43     int assemblyLength;
44     AssemblyObject *obj;
45     bool addToProject;
46 };
47 
48 class ExtractAssemblyRegionAndOpenViewTask : public Task {
49     Q_OBJECT
50 public:
51     ExtractAssemblyRegionAndOpenViewTask(const ExtractAssemblyRegionTaskSettings &settings);
52 
53     void prepare();
54 
55     QList<Task *> onSubTaskFinished(Task *subTask);
56 
57 private:
58     ExtractAssemblyRegionTaskSettings settings;
59     ExtractAssemblyRegionTask *extractTask;
60 };
61 
62 class ExtractAssemblyRegionTask : public Task {
63     Q_OBJECT
64 public:
65     ExtractAssemblyRegionTask(const ExtractAssemblyRegionTaskSettings &settings);
66 
67     void run();
68 
69 private:
70     ExtractAssemblyRegionTaskSettings settings;
71 };
72 
73 }  // namespace U2
74 
75 #endif
76