/dports/biology/py-pysam/pysam-0.18.0/samtools/ |
H A D | bedcov.c | 195 *p = 0; tid = bam_name2id(aux[0]->header, q); *p = c; in main_bedcov()
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H A D | bedcov.c.pysam.c | 197 *p = 0; tid = bam_name2id(aux[0]->header, q); *p = c; in main_bedcov()
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H A D | phase.c | 525 int tid = bam_name2id(h, str->s); in khash_t()
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H A D | phase.c.pysam.c | 527 int tid = bam_name2id(h, str->s); in khash_t()
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H A D | stats.c | 1849 int tid = bam_name2id(stats->info->sam_header, line.s); in init_regions()
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H A D | stats.c.pysam.c | 1851 int tid = bam_name2id(stats->info->sam_header, line.s); in init_regions()
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/dports/biology/samtools/samtools-1.14/ |
H A D | bedcov.c | 195 *p = 0; tid = bam_name2id(aux[0]->header, q); *p = c; in main_bedcov()
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H A D | phase.c | 525 int tid = bam_name2id(h, str->s); in khash_t()
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H A D | stats.c | 1849 int tid = bam_name2id(stats->info->sam_header, line.s); in init_regions()
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/dports/biology/vt/vt-0.57721/lib/htslib/htslib/ |
H A D | sam.h | 277 int bam_name2id(bam_hdr_t *h, const char *ref);
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/ |
H A D | sam.h | 277 int bam_name2id(bam_hdr_t *h, const char *ref);
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/dports/biology/stacks/stacks-2.4/htslib/htslib/ |
H A D | sam.h | 277 int bam_name2id(bam_hdr_t *h, const char *ref);
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/ |
H A D | sam.h | 270 int bam_name2id(bam_hdr_t *h, const char *ref);
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/dports/biology/vt/vt-0.57721/lib/htslib/ |
H A D | sam.c | 273 int bam_name2id(bam_hdr_t *h, const char *ref) in bam_name2id() function 858 … return hts_itr_querys(idx, region, (hts_name2id_f)(bam_name2id), hdr, hts_itr_query, bam_readrec); in sam_itr_querys() 868 return hts_itr_regions(idx, reglist, regcount, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_regions() 1213 c->tid = bam_name2id(h, q); in sam_parse1() 1261 c->mtid = bam_name2id(h, q); in sam_parse1()
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/dports/biology/stacks/stacks-2.4/htslib/ |
H A D | sam.c | 273 int bam_name2id(bam_hdr_t *h, const char *ref) in bam_name2id() function 854 … return hts_itr_querys(idx, region, (hts_name2id_f)(bam_name2id), hdr, hts_itr_query, bam_readrec); in sam_itr_querys() 864 return hts_itr_regions(idx, reglist, regcount, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_regions() 1209 c->tid = bam_name2id(h, q); in sam_parse1() 1257 c->mtid = bam_name2id(h, q); in sam_parse1()
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
H A D | sam.c | 271 int bam_name2id(bam_hdr_t *h, const char *ref) in bam_name2id() function 877 … return hts_itr_querys(idx, region, (hts_name2id_f)(bam_name2id), hdr, hts_itr_query, bam_readrec); in sam_itr_querys() 887 return hts_itr_regions(idx, reglist, regcount, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_regions() 1237 c->tid = bam_name2id(h, q); in sam_parse1() 1285 c->mtid = bam_name2id(h, q); in sam_parse1()
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
H A D | sam.c | 276 int bam_name2id(bam_hdr_t *h, const char *ref) in bam_name2id() function 692 … return hts_itr_querys(idx, region, (hts_name2id_f)(bam_name2id), hdr, hts_itr_query, bam_readrec); in sam_itr_querys() 969 c->tid = bam_name2id(h, q); in sam_parse1() 1017 c->mtid = bam_name2id(h, q); in sam_parse1()
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
H A D | sam.c | 398 return hts_parse_region(s, tid, beg, end, (hts_name2id_f)bam_name2id, h, flags); in sam_parse_region() 1301 return hts_itr_querys(idx, region, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_querys() 1323 … r_list = hts_reglist_create(regarray, regcount, &r_count, hdr, (hts_name2id_f)(bam_name2id)); in sam_itr_regarray() 1326 itr = hts_itr_regions(idx, r_list, r_count, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_regarray() 1347 return hts_itr_regions(idx, reglist, regcount, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_regions() 2132 c->tid = bam_name2id(h, q); in sam_parse1() 2177 c->mtid = bam_name2id(h, q); in sam_parse1()
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
H A D | sam.h | 772 static inline int bam_name2id(sam_hdr_t *h, const char *ref) { return sam_hdr_name2tid(h, ref); } in bam_name2id() function
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/dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
H A D | sam.h | 772 static inline int bam_name2id(sam_hdr_t *h, const char *ref) { return sam_hdr_name2tid(h, ref); } in bam_name2id() function
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/dports/biology/htslib/htslib-1.14/htslib/ |
H A D | sam.h | 772 static inline int bam_name2id(sam_hdr_t *h, const char *ref) { return sam_hdr_name2tid(h, ref); } in bam_name2id() function
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/dports/biology/py-pysam/pysam-0.18.0/htslib/ |
H A D | sam.c | 400 return hts_parse_region(s, tid, beg, end, (hts_name2id_f)bam_name2id, h, flags); in sam_parse_region() 1649 return hts_itr_querys(idx, region, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_querys() 1671 … r_list = hts_reglist_create(regarray, regcount, &r_count, hdr, (hts_name2id_f)(bam_name2id)); in sam_itr_regarray() 1674 itr = hts_itr_regions(idx, r_list, r_count, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_regarray() 1695 return hts_itr_regions(idx, reglist, regcount, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_regions() 2686 c->tid = bam_name2id(h, q); in sam_parse1() 2731 c->mtid = bam_name2id(h, q); in sam_parse1()
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/dports/biology/htslib/htslib-1.14/ |
H A D | sam.c | 400 return hts_parse_region(s, tid, beg, end, (hts_name2id_f)bam_name2id, h, flags); in sam_parse_region() 1649 return hts_itr_querys(idx, region, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_querys() 1671 … r_list = hts_reglist_create(regarray, regcount, &r_count, hdr, (hts_name2id_f)(bam_name2id)); in sam_itr_regarray() 1674 itr = hts_itr_regions(idx, r_list, r_count, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_regarray() 1695 return hts_itr_regions(idx, reglist, regcount, (hts_name2id_f)(bam_name2id), hdr, in sam_itr_regions() 2686 c->tid = bam_name2id(h, q); in sam_parse1() 2731 c->mtid = bam_name2id(h, q); in sam_parse1()
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/dports/biology/py-pysam/pysam-0.18.0/pysam/ |
H A D | libcalignmentfile.pyx | 531 tid = bam_name2id(self.ptr, reference)
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H A D | libchtslib.pxd | 1038 int bam_name2id(bam_hdr_t *h, const char *ref)
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