|
Name |
|
Date |
Size |
#Lines |
LOC |
| .. | | 04-Nov-2019 | - |
| cram/ | H | 04-Nov-2019 | - | 22,822 | 14,688 |
| htslib/ | H | 04-Nov-2019 | - | 7,267 | 2,886 |
| test/ | H | 07-May-2022 | - | 26,497 | 25,121 |
| INSTALL | H A D | 04-Nov-2019 | 7 KiB | 181 | 133 |
| LICENSE | H A D | 04-Nov-2019 | 3.5 KiB | 70 | 52 |
| Makefile | H A D | 04-Nov-2019 | 21.8 KiB | 517 | 335 |
| NEWS | H A D | 04-Nov-2019 | 10 KiB | 230 | 161 |
| README | H A D | 04-Nov-2019 | 273 | 6 | 4 |
| bcf_sr_sort.c | H A D | 04-Nov-2019 | 20.5 KiB | 648 | 540 |
| bcf_sr_sort.h | H A D | 04-Nov-2019 | 3.6 KiB | 104 | 62 |
| bgzf.c | H A D | 04-Nov-2019 | 58.3 KiB | 1,960 | 1,561 |
| bgzip.c | H A D | 04-Nov-2019 | 12.2 KiB | 337 | 288 |
| config.mk.in | H A D | 04-Nov-2019 | 3.2 KiB | 108 | 83 |
| configure.ac | H A D | 03-May-2022 | 12.4 KiB | 351 | 299 |
| errmod.c | H A D | 04-Nov-2019 | 6.2 KiB | 195 | 118 |
| faidx.5 | H A D | 04-Nov-2019 | 4.7 KiB | 147 | 122 |
| faidx.c | H A D | 04-Nov-2019 | 17.5 KiB | 631 | 534 |
| hfile.c | H A D | 04-Nov-2019 | 24.8 KiB | 890 | 627 |
| hfile_gcs.c | H A D | 04-Nov-2019 | 4.2 KiB | 138 | 89 |
| hfile_internal.h | H A D | 04-Nov-2019 | 6.4 KiB | 159 | 52 |
| hfile_libcurl.c | H A D | 04-Nov-2019 | 17.7 KiB | 639 | 485 |
| hfile_net.c | H A D | 04-Nov-2019 | 3.1 KiB | 113 | 64 |
| hfile_s3.c | H A D | 04-Nov-2019 | 11.6 KiB | 401 | 306 |
| hts.c | H A D | 04-Nov-2019 | 71 KiB | 2,363 | 1,893 |
| hts_internal.h | H A D | 04-Nov-2019 | 7.3 KiB | 187 | 54 |
| htsfile.1 | H A D | 04-Nov-2019 | 3.2 KiB | 81 | 57 |
| htsfile.c | H A D | 04-Nov-2019 | 7.8 KiB | 272 | 210 |
| htslib.mk | H A D | 04-Nov-2019 | 5.6 KiB | 180 | 117 |
| htslib.pc.in | H A D | 04-Nov-2019 | 490 | 16 | 13 |
| htslib_vars.mk | H A D | 04-Nov-2019 | 2.7 KiB | 52 | 24 |
| kfunc.c | H A D | 04-Nov-2019 | 9 KiB | 283 | 192 |
| knetfile.c | H A D | 04-Nov-2019 | 18.5 KiB | 637 | 515 |
| kstring.c | H A D | 04-Nov-2019 | 8.9 KiB | 393 | 319 |
| md5.c | H A D | 04-Nov-2019 | 10.3 KiB | 388 | 251 |
| multipart.c | H A D | 04-Nov-2019 | 7.4 KiB | 243 | 170 |
| plugin.c | H A D | 04-Nov-2019 | 5.4 KiB | 186 | 129 |
| probaln.c | H A D | 04-Nov-2019 | 11.3 KiB | 286 | 206 |
| realn.c | H A D | 04-Nov-2019 | 8.4 KiB | 200 | 166 |
| regidx.c | H A D | 04-Nov-2019 | 10 KiB | 343 | 270 |
| sam.5 | H A D | 04-Nov-2019 | 2.7 KiB | 69 | 44 |
| sam.c | H A D | 04-Nov-2019 | 79.3 KiB | 2,452 | 2,058 |
| synced_bcf_reader.c | H A D | 04-Nov-2019 | 37.3 KiB | 1,218 | 1,029 |
| tabix.1 | H A D | 04-Nov-2019 | 5.7 KiB | 182 | 148 |
| tabix.c | H A D | 04-Nov-2019 | 19.5 KiB | 547 | 475 |
| tbx.c | H A D | 04-Nov-2019 | 11.6 KiB | 368 | 313 |
| textutils.c | H A D | 04-Nov-2019 | 8.9 KiB | 380 | 298 |
| thread_pool.c | H A D | 04-Nov-2019 | 39.1 KiB | 1,374 | 794 |
| thread_pool_internal.h | H A D | 04-Nov-2019 | 5.5 KiB | 166 | 65 |
| vcf.5 | H A D | 04-Nov-2019 | 3.5 KiB | 121 | 94 |
| vcf.c | H A D | 04-Nov-2019 | 130 KiB | 3,854 | 3,363 |
| vcf_sweep.c | H A D | 04-Nov-2019 | 5.2 KiB | 184 | 132 |
| vcfutils.c | H A D | 04-Nov-2019 | 33.7 KiB | 826 | 747 |
README
1HTSlib is an implementation of a unified C library for accessing common file
2formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
3data. It is the core library used by samtools and bcftools.
4
5See INSTALL for building and installation instructions.
6