1# Makefile variables useful for third-party code using htslib's public API.
2#
3#    Copyright (C) 2013-2017 Genome Research Ltd.
4#
5#    Author: John Marshall <jm18@sanger.ac.uk>
6#
7# Permission is hereby granted, free of charge, to any person obtaining a copy
8# of this software and associated documentation files (the "Software"), to deal
9# in the Software without restriction, including without limitation the rights
10# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
11# copies of the Software, and to permit persons to whom the Software is
12# furnished to do so, subject to the following conditions:
13#
14# The above copyright notice and this permission notice shall be included in
15# all copies or substantial portions of the Software.
16#
17# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
18# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
19# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
20# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
21# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
22# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
23# DEALINGS IN THE SOFTWARE.
24
25# These variables can be used to express dependencies on htslib headers.
26# See htslib.mk for details.
27
28htslib_bgzf_h = $(HTSPREFIX)htslib/bgzf.h $(htslib_hts_defs_h)
29htslib_cram_h = $(HTSPREFIX)htslib/cram.h $(htslib_hts_h)
30htslib_faidx_h = $(HTSPREFIX)htslib/faidx.h $(htslib_hts_defs_h)
31htslib_hfile_h = $(HTSPREFIX)htslib/hfile.h $(htslib_hts_defs_h)
32htslib_hts_h = $(HTSPREFIX)htslib/hts.h $(htslib_hts_defs_h)
33htslib_hts_defs_h = $(HTSPREFIX)htslib/hts_defs.h
34htslib_hts_endian_h = $(HTSPREFIX)htslib/hts_endian.h
35htslib_kbitset_h = $(HTSPREFIX)htslib/kbitset.h
36htslib_kfunc_h = $(HTSPREFIX)htslib/kfunc.h
37htslib_khash_h = $(HTSPREFIX)htslib/khash.h
38htslib_khash_str2int_h = $(HTSPREFIX)htslib/khash_str2int.h $(htslib_khash_h)
39htslib_klist_h = $(HTSPREFIX)htslib/klist.h
40htslib_knetfile_h = $(HTSPREFIX)htslib/knetfile.h
41htslib_kseq_h = $(HTSPREFIX)htslib/kseq.h
42htslib_ksort_h = $(HTSPREFIX)htslib/ksort.h
43htslib_kstring_h = $(HTSPREFIX)htslib/kstring.h
44htslib_regidx_h = $(HTSPREFIX)htslib/regidx.h
45htslib_sam_h = $(HTSPREFIX)htslib/sam.h $(htslib_hts_h)
46htslib_synced_bcf_reader_h = $(HTSPREFIX)htslib/synced_bcf_reader.h $(htslib_hts_h) $(htslib_vcf_h) $(htslib_tbx_h)
47htslib_tbx_h = $(HTSPREFIX)htslib/tbx.h $(htslib_hts_h)
48htslib_thread_pool_h = $(HTSPREFIX)htslib/thread_pool.h
49htslib_vcf_h = $(HTSPREFIX)htslib/vcf.h $(htslib_hts_h) $(htslib_kstring_h) $(htslib_hts_defs_h) $(htslib_hts_endian_h)
50htslib_vcf_sweep_h = $(HTSPREFIX)htslib/vcf_sweep.h $(htslib_hts_h) $(htslib_vcf_h)
51htslib_vcfutils_h = $(HTSPREFIX)htslib/vcfutils.h $(htslib_vcf_h)
52