1# Makefile variables useful for third-party code using htslib's public API. 2# 3# Copyright (C) 2013-2017 Genome Research Ltd. 4# 5# Author: John Marshall <jm18@sanger.ac.uk> 6# 7# Permission is hereby granted, free of charge, to any person obtaining a copy 8# of this software and associated documentation files (the "Software"), to deal 9# in the Software without restriction, including without limitation the rights 10# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 11# copies of the Software, and to permit persons to whom the Software is 12# furnished to do so, subject to the following conditions: 13# 14# The above copyright notice and this permission notice shall be included in 15# all copies or substantial portions of the Software. 16# 17# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 18# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 19# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL 20# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 21# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING 22# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER 23# DEALINGS IN THE SOFTWARE. 24 25# These variables can be used to express dependencies on htslib headers. 26# See htslib.mk for details. 27 28htslib_bgzf_h = $(HTSPREFIX)htslib/bgzf.h $(htslib_hts_defs_h) 29htslib_cram_h = $(HTSPREFIX)htslib/cram.h $(htslib_hts_h) 30htslib_faidx_h = $(HTSPREFIX)htslib/faidx.h $(htslib_hts_defs_h) 31htslib_hfile_h = $(HTSPREFIX)htslib/hfile.h $(htslib_hts_defs_h) 32htslib_hts_h = $(HTSPREFIX)htslib/hts.h $(htslib_hts_defs_h) 33htslib_hts_defs_h = $(HTSPREFIX)htslib/hts_defs.h 34htslib_hts_endian_h = $(HTSPREFIX)htslib/hts_endian.h 35htslib_kbitset_h = $(HTSPREFIX)htslib/kbitset.h 36htslib_kfunc_h = $(HTSPREFIX)htslib/kfunc.h 37htslib_khash_h = $(HTSPREFIX)htslib/khash.h 38htslib_khash_str2int_h = $(HTSPREFIX)htslib/khash_str2int.h $(htslib_khash_h) 39htslib_klist_h = $(HTSPREFIX)htslib/klist.h 40htslib_knetfile_h = $(HTSPREFIX)htslib/knetfile.h 41htslib_kseq_h = $(HTSPREFIX)htslib/kseq.h 42htslib_ksort_h = $(HTSPREFIX)htslib/ksort.h 43htslib_kstring_h = $(HTSPREFIX)htslib/kstring.h 44htslib_regidx_h = $(HTSPREFIX)htslib/regidx.h 45htslib_sam_h = $(HTSPREFIX)htslib/sam.h $(htslib_hts_h) 46htslib_synced_bcf_reader_h = $(HTSPREFIX)htslib/synced_bcf_reader.h $(htslib_hts_h) $(htslib_vcf_h) $(htslib_tbx_h) 47htslib_tbx_h = $(HTSPREFIX)htslib/tbx.h $(htslib_hts_h) 48htslib_thread_pool_h = $(HTSPREFIX)htslib/thread_pool.h 49htslib_vcf_h = $(HTSPREFIX)htslib/vcf.h $(htslib_hts_h) $(htslib_kstring_h) $(htslib_hts_defs_h) $(htslib_hts_endian_h) 50htslib_vcf_sweep_h = $(HTSPREFIX)htslib/vcf_sweep.h $(htslib_hts_h) $(htslib_vcf_h) 51htslib_vcfutils_h = $(HTSPREFIX)htslib/vcfutils.h $(htslib_vcf_h) 52