| /dports/biology/infernal/infernal-1.1.3/src/ |
| H A D | cm_parsetree.c | 2611 int bifparent; /* for connecting bifurcs */ in cm_StochasticParsetree() local
2687 if (esl_stack_IPop(pda, &bifparent) == eslEOD) break; in cm_StochasticParsetree()
2690 v = tr->state[bifparent]; /* recover state index of B */ in cm_StochasticParsetree()
2840 int bifparent; /* for connecting bifurcs */ in cm_StochasticParsetreeHB() local
2959 if (esl_stack_IPop(pda, &bifparent) == eslEOD) break; in cm_StochasticParsetreeHB()
2962 v = tr->state[bifparent]; /* recover state index of B */ in cm_StochasticParsetreeHB()
3127 int bifparent; /* for connecting bifurcs */ in cm_TrStochasticParsetree() local
3351 if (esl_stack_IPop(i_pda, &bifparent) == eslEOD) break; in cm_TrStochasticParsetree()
3355 v = tr->state[bifparent]; /* recover state index of B */ in cm_TrStochasticParsetree()
3965 if (esl_stack_IPop(i_pda, &bifparent) == eslEOD) break; in cm_TrStochasticParsetreeHB()
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| H A D | cm_modelmaker.c | 771 int bifparent; in cm_from_guide() local
782 esl_stack_IPop(pda, &bifparent); in cm_from_guide()
783 cm->cnum[bifparent] = state; /* remember, cnum overloaded for bif: idx of right child */ in cm_from_guide()
790 cm->plast[state] = bifparent; in cm_from_guide()
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| H A D | cm_dpalign.c | 128 int bifparent; /* B_st parent */ in cm_alignT() local
171 if (esl_stack_IPop(pda, &bifparent) == eslEOD) break; in cm_alignT()
174 v = tr->state[bifparent]; /* recover state index of B */ in cm_alignT()
178 InsertTraceNode(tr, bifparent, TRACE_RIGHT_CHILD, i, j, y); in cm_alignT()
271 int bifparent; /* B_st parent */ in cm_alignT_hb() local
363 if (esl_stack_IPop(pda, &bifparent) == eslEOD) break; in cm_alignT_hb()
366 v = tr->state[bifparent]; /* recover state index of B */ in cm_alignT_hb()
370 InsertTraceNode(tr, bifparent, TRACE_RIGHT_CHILD, i, j, y); in cm_alignT_hb()
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| H A D | cm_dpsmall.c | 2819 int bifparent; in insideT() local
2879 if (esl_stack_IPop(pda, &bifparent) == eslEOD) break; in insideT()
2882 v = tr->state[bifparent]; /* recover state index of B */ in insideT()
2886 InsertTraceNode(tr, bifparent, TRACE_RIGHT_CHILD, i, j, y); in insideT()
7000 int bifparent; in insideT_b_me() local
7058 if (esl_stack_IPop(pda, &bifparent) == eslEOD) break; in insideT_b_me()
7067 v = tr->state[bifparent]; /* recover state index of B */ in insideT_b_me()
7071 InsertTraceNode(tr, bifparent, TRACE_RIGHT_CHILD, i, j, y); in insideT_b_me()
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| H A D | truncyk.c | 3874 int bifparent; in tr_insideT() local
3969 if (esl_stack_IPop(pda, &bifparent) == eslEOD) break; in tr_insideT()
3973 v = tr->state[bifparent]; in tr_insideT()
3978 InsertTraceNodewithMode(tr, bifparent, TRACE_RIGHT_CHILD, i, j, v, mode); in tr_insideT()
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| H A D | cm_dpalign_trunc.c | 190 int bifparent; /* B_st parent */ in cm_tr_alignT() local
301 if (esl_stack_IPop(pda_i, &bifparent) == eslEOD) break; in cm_tr_alignT()
305 v = tr->state[bifparent]; /* recover state index of B */ in cm_tr_alignT()
309 InsertTraceNodewithMode(tr, bifparent, TRACE_RIGHT_CHILD, i, j, y, mode); in cm_tr_alignT()
483 int bifparent; /* B_st parent */ in cm_tr_alignT_hb() local
654 if (esl_stack_IPop(pda_i, &bifparent) == eslEOD) break; in cm_tr_alignT_hb()
658 v = tr->state[bifparent]; /* recover state index of B */ in cm_tr_alignT_hb()
662 InsertTraceNodewithMode(tr, bifparent, TRACE_RIGHT_CHILD, i, j, y, mode); in cm_tr_alignT_hb()
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| /dports/biology/infernal/infernal-1.1.3/src/impl_sse/ |
| H A D | sse_cm_dpsmall.c | 4717 int bifparent; in sse_insideT() local
4765 if (esl_stack_IPop(pda, &bifparent) == eslEOD) break; in sse_insideT()
4768 v = tr->state[bifparent]; /* recover state index of B */ in sse_insideT()
4772 InsertTraceNode(tr, bifparent, TRACE_RIGHT_CHILD, i, j, y); in sse_insideT()
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