Searched refs:calculateSOR (Results 1 – 5 of 5) sorted by relevance
129 …return tableFromPerSampleAnnotations != null ? annotationForOneTable(calculateSOR(tableFromPerSamp… in calculateAnnotationFromGTfield()136 return annotationForOneTable(calculateSOR(table)); in calculateAnnotationFromLikelihoods()149 public static double calculateSOR(final int[][] table) { in calculateSOR() method in StrandOddsRatio
90 final double ratio = StrandOddsRatio.calculateSOR(table); in calculateAnnotationFromLikelihoods()103 annotationMap.put(a,StrandOddsRatio.calculateSOR(refAltTable)); in calculateReducedData()
61 final double ratio = StrandOddsRatio.calculateSOR(contingencyTable); in testUsingSOR()92 final double expectedSOR = StrandOddsRatio.calculateSOR(new int[][]{{1,2},{3,4}}); in testUsingGT()131 final double expectedSOR = StrandOddsRatio.calculateSOR(table); in testUsingLikelihoods()
188 …TRAND_ODDS_RATIO_KEY), StrandOddsRatio.formattedValue(StrandOddsRatio.calculateSOR(new int[][]{{re… in testAllAnnotations()
238 …STRAND_ODDS_RATIO_KEY, StrandOddsRatio.formattedValue(StrandOddsRatio.calculateSOR(StrandBiasTest.… in finalizeGenotype()