Searched refs:chimera_part (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | simplepair.c | 522 int chimera_part) { in compute_cigar_standard() argument
541 if (chimera_part == +1) { in compute_cigar_standard()
767 if (chimera_part == -1) { in compute_cigar_standard()
803 int chimera_part) { in compute_cigar_extended() argument
822 if (chimera_part == +1) { in compute_cigar_extended()
1092 if (chimera_part == -1) { in compute_cigar_extended()
1124 bool watsonp, int chimera_part) { in compute_cigar() argument
1127 watsonp,chimera_part); in compute_cigar()
1130 watsonp,chimera_part); in compute_cigar()
1743 int chimera_part = 0; in Simplepair_overlap_print_sam() local
[all …]
|
| H A D | pair.h | 215 bool watsonp, int chimera_part);
222 bool watsonp, int sensedir, int chimera_part, Chimera_T chimera,
|
| H A D | pair.c | 5228 int chimera_part) { in compute_cigar_standard() argument
5247 if (chimera_part == +1) { in compute_cigar_standard()
5473 if (chimera_part == -1) { in compute_cigar_standard()
5509 int chimera_part) { in compute_cigar_extended() argument
5528 if (chimera_part == +1) { in compute_cigar_extended()
5798 if (chimera_part == -1) { in compute_cigar_extended()
5833 watsonp,chimera_part); in Pair_compute_cigar()
5836 watsonp,chimera_part); in Pair_compute_cigar()
6373 watsonp,chimera_part); in Pair_print_sam()
6507 if (chimera_part == +1) {
[all …]
|
| H A D | stage3.h | 258 Sequence_T queryseq, int chimera_part, Chimera_T chimera,
|
| H A D | stage3.c | 6634 Sequence_T queryseq, int chimera_part, Chimera_T chimera, in Stage3_print_sam() argument
6654 querylength,this->watsonp,this->sensedir,chimera_part,chimera, in Stage3_print_sam()
6662 querylength,this->watsonp,this->sensedir,chimera_part,chimera, in Stage3_print_sam()
6671 this->watsonp,this->sensedir,chimera_part,chimera, in Stage3_print_sam()
|