| /dports/devel/R-cran-fansi/fansi/src/ |
| H A D | strip.c | 165 const char * chr_end = chr + LENGTH(x_chr); in FANSI_strip() local
166 if(!chr_end) { in FANSI_strip()
174 } else if(chr_end > chr_track) { in FANSI_strip()
175 memcpy(res_track, chr_track, chr_end - chr_track); in FANSI_strip()
176 res_track += chr_end - chr_track; in FANSI_strip()
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| /dports/textproc/angle-grinder/angle-grinder-0.18.0/src/operator/ |
| H A D | split.rs | 18 let chr_end = idx; in prev_char() localVariable
19 let mut char_start = chr_end - 1; in prev_char()
23 Some(&s[char_start..chr_end]) in prev_char()
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | regidx.c | 145 inline int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, uint32_t beg, uint32_t end, voi… in regidx_push() argument
152 kputsn(chr_beg, chr_end-chr_beg+1, &idx->str); in regidx_push()
433 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_bed() argument
444 *chr_end = se-1; in regidx_parse_bed()
465 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_tab() argument
476 *chr_end = se-1; in regidx_parse_tab()
505 int regidx_parse_vcf(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_vcf() argument
507 int ret = regidx_parse_tab(line, chr_beg, chr_end, beg, end, payload, usr); in regidx_parse_vcf()
512 int regidx_parse_reg(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_reg() argument
523 *chr_end = se-1; in regidx_parse_reg()
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| H A D | regidx.h | 98 typedef int (*regidx_parse_f)(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uin…
153 int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, uint32_t beg, uint32_t end, void *payl…
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | regidx.c | 145 inline int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, uint32_t beg, uint32_t end, voi… in regidx_push() argument
152 kputsn(chr_beg, chr_end-chr_beg+1, &idx->str); in regidx_push()
433 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_bed() argument
444 *chr_end = se-1; in regidx_parse_bed()
465 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_tab() argument
476 *chr_end = se-1; in regidx_parse_tab()
505 int regidx_parse_vcf(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_vcf() argument
507 int ret = regidx_parse_tab(line, chr_beg, chr_end, beg, end, payload, usr); in regidx_parse_vcf()
512 int regidx_parse_reg(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_reg() argument
523 *chr_end = se-1; in regidx_parse_reg()
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| H A D | regidx.h | 98 typedef int (*regidx_parse_f)(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uin…
153 int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, uint32_t beg, uint32_t end, void *payl…
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | regidx.c | 149 int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, hts_pos_t beg, hts_pos_t end, void *pa… in regidx_push() argument
157 if (kputsn(chr_beg, chr_end-chr_beg+1, ks_clear(&idx->str)) < 0) return -1; in regidx_push()
464 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_bed() argument
475 *chr_end = se-1; in regidx_parse_bed()
496 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_tab() argument
507 *chr_end = se-1; in regidx_parse_tab()
536 int regidx_parse_vcf(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_vcf() argument
538 int ret = regidx_parse_tab(line, chr_beg, chr_end, beg, end, payload, usr); in regidx_parse_vcf()
543 int regidx_parse_reg(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_reg() argument
554 *chr_end = se-1; in regidx_parse_reg()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | regidx.c | 145 inline int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, uint32_t beg, uint32_t end, voi… in regidx_push() argument
152 kputsn(chr_beg, chr_end-chr_beg+1, &idx->str); in regidx_push()
433 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_bed() argument
444 *chr_end = se-1; in regidx_parse_bed()
465 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_tab() argument
476 *chr_end = se-1; in regidx_parse_tab()
505 int regidx_parse_vcf(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_vcf() argument
507 int ret = regidx_parse_tab(line, chr_beg, chr_end, beg, end, payload, usr); in regidx_parse_vcf()
512 int regidx_parse_reg(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_reg() argument
523 *chr_end = se-1; in regidx_parse_reg()
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| H A D | regidx.c.pysam.c | 147 inline int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, uint32_t beg, uint32_t end, voi… in regidx_push() argument
154 kputsn(chr_beg, chr_end-chr_beg+1, &idx->str); in regidx_push()
435 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_bed() argument
446 *chr_end = se-1; in regidx_parse_bed()
467 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_tab() argument
478 *chr_end = se-1; in regidx_parse_tab()
507 int regidx_parse_vcf(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_vcf() argument
509 int ret = regidx_parse_tab(line, chr_beg, chr_end, beg, end, payload, usr); in regidx_parse_vcf()
514 int regidx_parse_reg(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uint32_t *end… in regidx_parse_reg() argument
525 *chr_end = se-1; in regidx_parse_reg()
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| H A D | regidx.h | 98 typedef int (*regidx_parse_f)(const char *line, char **chr_beg, char **chr_end, uint32_t *beg, uin…
153 int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, uint32_t beg, uint32_t end, void *payl…
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | regidx.c | 149 int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, hts_pos_t beg, hts_pos_t end, void *pa… in regidx_push() argument
157 if (kputsn(chr_beg, chr_end-chr_beg+1, ks_clear(&idx->str)) < 0) return -1; in regidx_push()
464 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_bed() argument
475 *chr_end = se-1; in regidx_parse_bed()
496 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_tab() argument
507 *chr_end = se-1; in regidx_parse_tab()
536 int regidx_parse_vcf(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_vcf() argument
538 int ret = regidx_parse_tab(line, chr_beg, chr_end, beg, end, payload, usr); in regidx_parse_vcf()
543 int regidx_parse_reg(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_reg() argument
554 *chr_end = se-1; in regidx_parse_reg()
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | regidx.c | 149 int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, hts_pos_t beg, hts_pos_t end, void *pa… in regidx_push() argument
157 if (kputsn(chr_beg, chr_end-chr_beg+1, ks_clear(&idx->str)) < 0) return -1; in regidx_push()
464 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_bed() argument
475 *chr_end = se-1; in regidx_parse_bed()
496 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_tab() argument
507 *chr_end = se-1; in regidx_parse_tab()
536 int regidx_parse_vcf(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_vcf() argument
538 int ret = regidx_parse_tab(line, chr_beg, chr_end, beg, end, payload, usr); in regidx_parse_vcf()
543 int regidx_parse_reg(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, hts_pos_t *e… in regidx_parse_reg() argument
554 *chr_end = se-1; in regidx_parse_reg()
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| /dports/biology/plink/plink-ng-79b2df8c/2.0/ |
| H A D | plink2_set.cc | 177 uint32_t chr_end = 0; in LoadIntervalBed() local
217 chr_end = cip->chr_fo_vidx_start[chr_fo_idx + 1]; in LoadIntervalBed()
218 if (chr_end == chr_start) { in LoadIntervalBed()
270 … range_first = CountSortedSmallerU32(&(variant_bps[chr_start]), chr_end - chr_start, range_first); in LoadIntervalBed()
271 …range_last = CountSortedSmallerU32(&(variant_bps[chr_start]), chr_end - chr_start, range_last + 1); in LoadIntervalBed()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
| H A D | regidx.h | 112 typedef int (*regidx_parse_f)(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, ht…
181 int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, hts_pos_t beg, hts_pos_t end, void *pa…
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
| H A D | regidx.h | 112 typedef int (*regidx_parse_f)(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, ht…
181 int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, hts_pos_t beg, hts_pos_t end, void *pa…
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| /dports/biology/htslib/htslib-1.14/htslib/ |
| H A D | regidx.h | 112 typedef int (*regidx_parse_f)(const char *line, char **chr_beg, char **chr_end, hts_pos_t *beg, ht…
181 int regidx_push(regidx_t *idx, char *chr_beg, char *chr_end, hts_pos_t beg, hts_pos_t end, void *pa…
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| /dports/biology/vt/vt-0.57721/lib/htslib/test/ |
| H A D | test-regidx.c | 44 int custom_parse(const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, void … in custom_parse() argument
47 int i, ret = regidx_parse_tab(line,chr_beg,chr_end,reg,NULL,NULL); in custom_parse()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/test/ |
| H A D | test-regidx.c | 44 int custom_parse(const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, void … in custom_parse() argument
47 int i, ret = regidx_parse_tab(line,chr_beg,chr_end,reg,NULL,NULL); in custom_parse()
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| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | synced_bcf_reader.c | 880 *chr_end = NULL; in _regions_parse_line()
932 *chr_end = se; in _regions_parse_line()
966 char *chr, *chr_end; in bcf_sr_regions_init() local
968 ret = _regions_parse_line(reg->line.s, ichr,ifrom,abs(ito), &chr,&chr_end,&from,&to); in bcf_sr_regions_init()
972 … ret = _regions_parse_line(reg->line.s, ichr,ifrom,ifrom, &chr,&chr_end,&from,&to); in bcf_sr_regions_init()
983 *chr_end = 0; in bcf_sr_regions_init()
985 *chr_end = '\t'; in bcf_sr_regions_init()
1073 char *chr, *chr_end; in bcf_sr_regions_next() local
1115 ret = _regions_parse_line(reg->line.s, ichr,ifrom,ito, &chr,&chr_end,&from,&to); in bcf_sr_regions_next()
1125 *chr_end = 0; in bcf_sr_regions_next()
[all …]
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| H A D | regidx.c | 287 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, v… in regidx_parse_bed() argument
299 *chr_end = se-1; in regidx_parse_bed()
312 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, v… in regidx_parse_tab() argument
324 *chr_end = se-1; in regidx_parse_tab()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | synced_bcf_reader.c | 881 *chr_end = NULL; in _regions_parse_line()
933 *chr_end = se; in _regions_parse_line()
967 char *chr, *chr_end; in bcf_sr_regions_init() local
969 ret = _regions_parse_line(reg->line.s, ichr,ifrom,abs(ito), &chr,&chr_end,&from,&to); in bcf_sr_regions_init()
973 … ret = _regions_parse_line(reg->line.s, ichr,ifrom,ifrom, &chr,&chr_end,&from,&to); in bcf_sr_regions_init()
984 *chr_end = 0; in bcf_sr_regions_init()
986 *chr_end = '\t'; in bcf_sr_regions_init()
1074 char *chr, *chr_end; in bcf_sr_regions_next() local
1116 ret = _regions_parse_line(reg->line.s, ichr,ifrom,ito, &chr,&chr_end,&from,&to); in bcf_sr_regions_next()
1126 *chr_end = 0; in bcf_sr_regions_next()
[all …]
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| H A D | regidx.c | 287 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, v… in regidx_parse_bed() argument
299 *chr_end = se-1; in regidx_parse_bed()
312 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, v… in regidx_parse_tab() argument
324 *chr_end = se-1; in regidx_parse_tab()
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | synced_bcf_reader.c | 879 *chr_end = NULL; in _regions_parse_line()
931 *chr_end = se; in _regions_parse_line()
965 char *chr, *chr_end; in bcf_sr_regions_init() local
967 ret = _regions_parse_line(reg->line.s, ichr,ifrom,abs(ito), &chr,&chr_end,&from,&to); in bcf_sr_regions_init()
971 … ret = _regions_parse_line(reg->line.s, ichr,ifrom,ifrom, &chr,&chr_end,&from,&to); in bcf_sr_regions_init()
982 *chr_end = 0; in bcf_sr_regions_init()
984 *chr_end = '\t'; in bcf_sr_regions_init()
1072 char *chr, *chr_end; in bcf_sr_regions_next() local
1114 ret = _regions_parse_line(reg->line.s, ichr,ifrom,ito, &chr,&chr_end,&from,&to); in bcf_sr_regions_next()
1124 *chr_end = 0; in bcf_sr_regions_next()
[all …]
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| H A D | regidx.c | 287 int regidx_parse_bed(const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, v… in regidx_parse_bed() argument
299 *chr_end = se-1; in regidx_parse_bed()
312 int regidx_parse_tab(const char *line, char **chr_beg, char **chr_end, reg_t *reg, void *payload, v… in regidx_parse_tab() argument
324 *chr_end = se-1; in regidx_parse_tab()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | synced_bcf_reader.c | 873 *chr_end = NULL; in _regions_parse_line()
925 *chr_end = se; in _regions_parse_line()
959 char *chr, *chr_end; in bcf_sr_regions_init() local
961 ret = _regions_parse_line(reg->line.s, ichr,ifrom,abs(ito), &chr,&chr_end,&from,&to); in bcf_sr_regions_init()
965 … ret = _regions_parse_line(reg->line.s, ichr,ifrom,ifrom, &chr,&chr_end,&from,&to); in bcf_sr_regions_init()
975 *chr_end = 0; in bcf_sr_regions_init()
977 *chr_end = '\t'; in bcf_sr_regions_init()
1065 char *chr, *chr_end; in bcf_sr_regions_next() local
1107 ret = _regions_parse_line(reg->line.s, ichr,ifrom,ito, &chr,&chr_end,&from,&to); in bcf_sr_regions_next()
1116 *chr_end = 0; in bcf_sr_regions_next()
[all …]
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