Searched refs:countMismatches (Results 1 – 13 of 13) sorted by relevance
| /dports/biology/vcflib/vcflib-1.0.2/smithwaterman/ |
| H A D | LeftAlign.h | 25 int countMismatches(string& alternateQuery, string& cigar, string& referenceSequence);
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| H A D | LeftAlign.cpp | 746 int countMismatches(string& querySequence, string& cigar, string referenceSequence) { in countMismatches() function
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib/smithwaterman/ |
| H A D | LeftAlign.h | 25 int countMismatches(string& alternateQuery, string& cigar, string& referenceSequence);
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| H A D | LeftAlign.cpp | 746 int countMismatches(string& querySequence, string& cigar, string referenceSequence) { in countMismatches() function
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| /dports/biology/smithwaterman/smithwaterman-2610e259611ae4cde8f03c72499d28f03f6d38a7/ |
| H A D | LeftAlign.h | 25 int countMismatches(string& alternateQuery, string& cigar, string& referenceSequence);
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| H A D | LeftAlign.cpp | 746 int countMismatches(string& querySequence, string& cigar, string referenceSequence) { in countMismatches() function
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| /dports/biology/freebayes/freebayes-1.3.5/src/ |
| H A D | LeftAlign.cpp | 344 int countMismatches(BAMALIGN& alignment, string referenceSequence) { in countMismatches() function
387 int mismatchesBefore = countMismatches(alignment, referenceSequence); in stablyLeftAlign()
400 int mismatchesAfter = countMismatches(alignment, referenceSequence); in stablyLeftAlign()
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| H A D | LeftAlign.h | 119 int countMismatches(BAMALIGN& alignment, string referenceSequence);
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| /dports/audio/rhvoice/RHVoice-1.2.4/src/third-party/cldr/tools/java/org/unicode/cldr/test/ |
| H A D | CheckDates.java | 933 int countMismatches = 0; in checkValue() local
965 countMismatches++; in checkValue()
971 String msg = countMismatches != 1 in checkValue()
980 String msg = countMismatches != 1 in checkValue()
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| /dports/biology/vcflib/vcflib-1.0.2/src/ |
| H A D | vcfleftalign.cpp | 178 int countMismatches(string& alternateSequence, string referenceSequence);
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/ |
| H A D | vcfleftalign.cpp | 169 int countMismatches(string& alternateSequence, string referenceSequence);
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| /dports/biology/freebayes/freebayes-1.3.5/vcflib/src/ |
| H A D | vcfleftalign.cpp | 169 int countMismatches(string& alternateSequence, string referenceSequence);
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| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | Read.java | 1532 public int countMismatches(){ in countMismatches() method in Read
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