| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | sam.c | 846 static int cram_name2id(void *fdv, const char *ref) in cram_name2id() function
856 return hts_itr_querys(idx, region, cram_name2id, cidx->cram, cram_itr_query, cram_readrec); in sam_itr_querys()
865 return hts_itr_regions(idx, reglist, regcount, cram_name2id, cidx->cram, in sam_itr_regions()
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | sam.c | 842 static int cram_name2id(void *fdv, const char *ref) in cram_name2id() function
852 return hts_itr_querys(idx, region, cram_name2id, cidx->cram, cram_itr_query, cram_readrec); in sam_itr_querys()
861 return hts_itr_regions(idx, reglist, regcount, cram_name2id, cidx->cram, in sam_itr_regions()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | sam.c | 865 static int cram_name2id(void *fdv, const char *ref) in cram_name2id() function
875 return hts_itr_querys(idx, region, cram_name2id, cidx->cram, cram_itr_query, cram_readrec); in sam_itr_querys()
884 return hts_itr_regions(idx, reglist, regcount, cram_name2id, cidx->cram, in sam_itr_regions()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | sam.c | 1292 static int cram_name2id(void *fdv, const char *ref) in cram_name2id() function
1317 r_list = hts_reglist_create(regarray, regcount, &r_count, cidx->cram, cram_name2id); in sam_itr_regarray()
1320 itr = hts_itr_regions(idx, r_list, r_count, cram_name2id, cidx->cram, in sam_itr_regarray()
1344 return hts_itr_regions(idx, reglist, regcount, cram_name2id, cidx->cram, in sam_itr_regions()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | sam.c | 680 static int cram_name2id(void *fdv, const char *ref) in cram_name2id() function
690 return hts_itr_querys(idx, region, cram_name2id, cidx->cram, cram_itr_query, cram_readrec); in sam_itr_querys()
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | sam.c | 1640 static int cram_name2id(void *fdv, const char *ref) in cram_name2id() function
1665 r_list = hts_reglist_create(regarray, regcount, &r_count, cidx->cram, cram_name2id); in sam_itr_regarray()
1668 itr = hts_itr_regions(idx, r_list, r_count, cram_name2id, cidx->cram, in sam_itr_regarray()
1692 return hts_itr_regions(idx, reglist, regcount, cram_name2id, cidx->cram, in sam_itr_regions()
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | sam.c | 1640 static int cram_name2id(void *fdv, const char *ref) in cram_name2id() function
1665 r_list = hts_reglist_create(regarray, regcount, &r_count, cidx->cram, cram_name2id); in sam_itr_regarray()
1668 itr = hts_itr_regions(idx, r_list, r_count, cram_name2id, cidx->cram, in sam_itr_regarray()
1692 return hts_itr_regions(idx, reglist, regcount, cram_name2id, cidx->cram, in sam_itr_regions()
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