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Searched refs:cutoff_level (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dconcordance.c350 cutoff_level = level;
717 int cutoff_level, level; in Concordance_pair_up_genome() local
779 cutoff_level = level; in Concordance_pair_up_genome()
782 cutoff_level = level; in Concordance_pair_up_genome()
785 cutoff_level = level; in Concordance_pair_up_genome()
1527 int cutoff_level, level; in Concordance_pair_up_distant() local
1585 cutoff_level = level; in Concordance_pair_up_distant()
1588 cutoff_level = level; in Concordance_pair_up_distant()
1591 cutoff_level = level; in Concordance_pair_up_distant()
1594 cutoff_level = level; in Concordance_pair_up_distant()
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H A Ddynprog_end.h95 int cutoff_level, char *queryptr, int querylength, Compress_T query_compress,
111 int cutoff_level, char *queryptr, int querylength, Compress_T query_compress,
H A Dstage3hr.c6666 int cutoff_level, ref_nmismatches; in Stage3end_optimal_score_prefinal() local
6783 cutoff_level = minscore; in Stage3end_optimal_score_prefinal()
6791 hit->score_eventrim,cutoff_level)); in Stage3end_optimal_score_prefinal()
6798 hit->score_eventrim,cutoff_level)); in Stage3end_optimal_score_prefinal()
6917 int max_nmatches = 0, cutoff_level;
6949 cutoff_level = max_nmatches - subopt_levels;
6987 cutoff_level = max_nmatches - subopt_levels;
7262 int cutoff_level; in Stage3end_optimal_score_final() local
14297 int max_nmatches = 0, cutoff_level;
14339 cutoff_level = max_nmatches - subopt_levels;
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H A Dladder.c783 cutoff_level = score;
785 cutoff_level = max_score;
788 return cutoff_level;
/dports/biology/gmap/gmap-2020-09-12/
H A DChangeLog4157 subopt_levels into Stage3hr_setup. Removing cutoff_level as parameter
4483 turning off comparison of score_eventrim with cutoff_level. In
5949 being cutoff_level, and not querylength. Using reject_trimlength instead
11161 Stage3end_bad_stretch_p to Stage3end_score > cutoff_level, because
13422 * stage1hr.c: Fixed issues with fast_level and cutoff_level for very short
/dports/security/amavisd-new/amavis-v2.12.0/
H A DRELEASE_NOTES9507 spam above cutoff_level) did not turn LMTP status into a success,