/dports/math/stanmath/math-4.2.0/lib/sundials_5.7.0/src/cvodes/ |
H A D | cvodes_nls.c | 140 *yn = cv_mem->cv_y; in CVodeGetNonlinearSystemData() 213 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsLSetup() 246 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolve() 313 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidual() 316 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidual() 342 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunction() 345 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunction()
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H A D | cvodes_nls_sim.c | 291 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensSim() 332 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, in cvNlsLSolveSensSim() 344 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensSim() 451 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidualSensSim() 454 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensSim() 476 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensSim() 515 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunctionSensSim() 518 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunctionSensSim() 539 cv_mem->cv_y, res, in cvNlsFPFunctionSensSim()
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H A D | cvodes_nls_stg1.c | 210 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensStg1() 250 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensStg1() 324 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensStg1() 359 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsFPFunctionSensStg1()
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H A D | cvodes_nls_stg.c | 245 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensStg() 287 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensStg() 390 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensStg() 435 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsFPFunctionSensStg()
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H A D | cvodes.c | 2800 if ((cv_mem->cv_y = yout) == NULL) { in CVode() 5173 retval = cv_mem->cv_f(cv_mem->cv_tn+hg, cv_mem->cv_y, in cvYddNorm() 5201 cv_mem->cv_y, cv_mem->cv_yS, in cvYddNorm() 6364 retval = cv_mem->cv_fQ(cv_mem->cv_tn, cv_mem->cv_y, in cvQuadNls() 7690 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck1() 7759 N_VLinearSum(ONE, cv_mem->cv_y, hratio, cv_mem->cv_zn[1], cv_mem->cv_y); in cvRcheck2() 7761 (void) CVodeGetDky(cv_mem, tplus, 0, cv_mem->cv_y); in cvRcheck2() 7763 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck2() 7806 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() 7811 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() [all …]
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/dports/math/sundials/sundials-5.7.0/src/cvodes/ |
H A D | cvodes_nls.c | 140 *yn = cv_mem->cv_y; in CVodeGetNonlinearSystemData() 213 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsLSetup() 246 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolve() 313 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidual() 316 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidual() 342 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunction() 345 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunction()
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H A D | cvodes_nls_sim.c | 291 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensSim() 332 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, in cvNlsLSolveSensSim() 344 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensSim() 451 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidualSensSim() 454 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensSim() 476 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensSim() 515 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunctionSensSim() 518 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunctionSensSim() 539 cv_mem->cv_y, res, in cvNlsFPFunctionSensSim()
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H A D | cvodes_nls_stg1.c | 210 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensStg1() 250 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensStg1() 324 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensStg1() 359 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsFPFunctionSensStg1()
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H A D | cvodes_nls_stg.c | 245 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensStg() 287 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensStg() 390 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensStg() 435 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsFPFunctionSensStg()
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/dports/math/sundials/sundials-5.7.0/src/cvode/ |
H A D | cvode_nls.c | 157 *yn = cv_mem->cv_y; in CVodeGetNonlinearSystemData() 230 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsLSetup() 261 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolve() 327 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidual() 330 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidual() 365 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunction() 368 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunction()
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H A D | cvode.c | 1036 if ((cv_mem->cv_y = yout) == NULL) { in CVode() 2065 retval = cv_mem->cv_f(cv_mem->cv_tn+hg, cv_mem->cv_y, in cvYddNorm() 2820 cv_mem->cv_y, in cvCheckConstraints() 3807 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck1() 3853 retval = cv_mem->cv_gfun(cv_mem->cv_tlo, cv_mem->cv_y, in cvRcheck2() 3876 N_VLinearSum(ONE, cv_mem->cv_y, hratio, cv_mem->cv_zn[1], cv_mem->cv_y); in cvRcheck2() 3878 (void) CVodeGetDky(cv_mem, tplus, 0, cv_mem->cv_y); in cvRcheck2() 3880 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck2() 3923 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() 3928 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() [all …]
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/dports/science/cantera/cantera-2.5.1-611-gc4d6ecc15/ext/sundials/src/cvodes/ |
H A D | cvodes_nls_sim.c | 258 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensSim() 299 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, in cvNlsLSolveSensSim() 311 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensSim() 418 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidualSensSim() 421 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensSim() 443 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensSim() 482 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunctionSensSim() 485 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunctionSensSim() 506 cv_mem->cv_y, res, in cvNlsFPFunctionSensSim()
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H A D | cvodes_nls.c | 178 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsLSetup() 211 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolve() 278 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidual() 281 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidual() 307 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunction() 310 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunction()
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H A D | cvodes_nls_stg1.c | 210 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensStg1() 250 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensStg1() 324 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensStg1() 359 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsFPFunctionSensStg1()
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H A D | cvodes_nls_stg.c | 245 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensStg() 287 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensStg() 390 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensStg() 435 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsFPFunctionSensStg()
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H A D | cvodes.c | 2800 if ((cv_mem->cv_y = yout) == NULL) { in CVode() 5101 retval = cv_mem->cv_f(cv_mem->cv_tn+hg, cv_mem->cv_y, in cvYddNorm() 5129 cv_mem->cv_y, cv_mem->cv_yS, in cvYddNorm() 6276 retval = cv_mem->cv_fQ(cv_mem->cv_tn, cv_mem->cv_y, in cvQuadNls() 7595 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck1() 7664 N_VLinearSum(ONE, cv_mem->cv_y, hratio, cv_mem->cv_zn[1], cv_mem->cv_y); in cvRcheck2() 7666 (void) CVodeGetDky(cv_mem, tplus, 0, cv_mem->cv_y); in cvRcheck2() 7668 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck2() 7711 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() 7716 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() [all …]
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/dports/math/py-pystan/pystan-2.19.0.0/pystan/stan/lib/stan_math/lib/sundials_4.1.0/src/cvodes/ |
H A D | cvodes_nls_sim.c | 259 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensSim() 300 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, in cvNlsLSolveSensSim() 312 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensSim() 418 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidualSensSim() 421 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensSim() 443 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensSim() 482 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunctionSensSim() 485 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunctionSensSim() 506 cv_mem->cv_y, res, in cvNlsFPFunctionSensSim()
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H A D | cvodes_nls.c | 178 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsLSetup() 211 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolve() 277 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidual() 280 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidual() 306 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunction() 309 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunction()
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H A D | cvodes_nls_stg1.c | 211 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensStg1() 251 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensStg1() 325 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensStg1() 360 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsFPFunctionSensStg1()
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H A D | cvodes_nls_stg.c | 246 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, in cvNlsLSetupSensStg() 288 cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolveSensStg() 389 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidualSensStg() 434 cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsFPFunctionSensStg()
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H A D | cvodes.c | 2766 if ((cv_mem->cv_y = yout) == NULL) { in CVode() 4833 retval = cv_mem->cv_f(cv_mem->cv_tn+hg, cv_mem->cv_y, in cvYddNorm() 6487 N_VLinearSum(ONE, cv_mem->cv_y, -PT1, in cvCheckConstraints() 6534 retval = cv_mem->cv_fQ(cv_mem->cv_tn, cv_mem->cv_y, in cvQuadNls() 7837 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck1() 7907 N_VLinearSum(ONE, cv_mem->cv_y, hratio, cv_mem->cv_zn[1], cv_mem->cv_y); in cvRcheck2() 7909 (void) CVodeGetDky(cv_mem, tplus, 0, cv_mem->cv_y); in cvRcheck2() 7911 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck2() 7954 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() 7959 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() [all …]
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/dports/science/cantera/cantera-2.5.1-611-gc4d6ecc15/ext/sundials/src/cvode/ |
H A D | cvode_nls.c | 196 retval = cv_mem->cv_lsetup(cv_mem, cv_mem->convfail, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsLSetup() 227 retval = cv_mem->cv_lsolve(cv_mem, delta, cv_mem->cv_ewt, cv_mem->cv_y, cv_mem->cv_ftemp); in cvNlsLSolve() 293 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsResidual() 296 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, cv_mem->cv_ftemp, in cvNlsResidual() 331 N_VLinearSum(ONE, cv_mem->cv_zn[0], ONE, ycor, cv_mem->cv_y); in cvNlsFPFunction() 334 retval = cv_mem->cv_f(cv_mem->cv_tn, cv_mem->cv_y, res, in cvNlsFPFunction()
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H A D | cvode.c | 1036 if ((cv_mem->cv_y = yout) == NULL) { in CVode() 2042 retval = cv_mem->cv_f(cv_mem->cv_tn+hg, cv_mem->cv_y, in cvYddNorm() 2791 cv_mem->cv_y, in cvCheckConstraints() 3778 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck1() 3824 retval = cv_mem->cv_gfun(cv_mem->cv_tlo, cv_mem->cv_y, in cvRcheck2() 3847 N_VLinearSum(ONE, cv_mem->cv_y, hratio, cv_mem->cv_zn[1], cv_mem->cv_y); in cvRcheck2() 3849 (void) CVodeGetDky(cv_mem, tplus, 0, cv_mem->cv_y); in cvRcheck2() 3851 retval = cv_mem->cv_gfun(tplus, cv_mem->cv_y, in cvRcheck2() 3894 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() 3899 N_VScale(ONE, cv_mem->cv_zn[0], cv_mem->cv_y); in cvRcheck3() [all …]
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/dports/science/plumed/plumed2-2.7.2/user-doc/tutorials/others/opes-metad/ |
H A D | FES_from_Reweighting.py | 202 cv_y=np.array(data.iloc[:,all_cols.index(col_y)]) variable 243 grid_min_y=min(cv_y) 253 grid_max_y=max(cv_y) 379 dist_y=(point_y-cv_y[start:end])/sigma_y 381 dy=np.absolute(point_y-cv_y[start:end])
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/dports/math/casadi/casadi-3.5.5/external_packages/casadi-sundials/cvodes/ |
H A D | cvodes_impl.h | 178 N_Vector cv_y; /* y is used as temporary storage by the solver. member 637 N_Vector cv_y; member
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