| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | intron.c | 259 Intron_canonical_fwd_p (char donor1, char donor2, char acceptor2, char acceptor1) { in Intron_canonical_fwd_p() argument
260 if (donor1 == 'G' && donor2 == 'T' && in Intron_canonical_fwd_p()
270 if (donor1 == 'C' && donor2 == 'T' && in Intron_canonical_rev_p()
279 Intron_gcag_fwd_p (char donor1, char donor2, char acceptor2, char acceptor1) { in Intron_gcag_fwd_p() argument
280 if (donor1 == 'G' && donor2 == 'C' && in Intron_gcag_fwd_p()
289 Intron_atac_fwd_p (char donor1, char donor2, char acceptor2, char acceptor1) { in Intron_atac_fwd_p() argument
290 if (donor1 == 'A' && donor2 == 'T' && in Intron_atac_fwd_p()
299 Intron_gcag_rev_p (char donor1, char donor2, char acceptor2, char acceptor1) { in Intron_gcag_rev_p() argument
300 if (donor1 == 'C' && donor2 == 'T' && in Intron_gcag_rev_p()
309 Intron_atac_rev_p (char donor1, char donor2, char acceptor2, char acceptor1) { in Intron_atac_rev_p() argument
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| H A D | intron.h | 66 Intron_canonical_fwd_p (char donor1, char donor2, char acceptor2, char acceptor1);
68 Intron_canonical_rev_p (char donor1, char donor2, char acceptor2, char acceptor1);
70 Intron_gcag_fwd_p (char donor1, char donor2, char acceptor2, char acceptor1);
72 Intron_gcag_rev_p (char donor1, char donor2, char acceptor2, char acceptor1);
74 Intron_atac_fwd_p (char donor1, char donor2, char acceptor2, char acceptor1);
76 Intron_atac_rev_p (char donor1, char donor2, char acceptor2, char acceptor1);
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| H A D | chimera.h | 37 char donor1, char donor2, char acceptor2, char acceptor1,
57 char *donor1, char *donor2, char *acceptor2, char *acceptor1,
69 char *donor1, char *donor2, char *acceptor2, char *acceptor1,
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| H A D | chimera.c | 70 char donor2; member
180 char donor1, char donor2, char acceptor2, char acceptor1, in Chimera_new() argument
193 new->donor2 = donor2; in Chimera_new()
769 *donor1 = *donor2 = 'N'; in Chimera_find_breakpoint()
773 *donor2 = Genome_get_char(genome,left+2); in Chimera_find_breakpoint()
778 *donor1 = *donor2 = 'N'; in Chimera_find_breakpoint()
915 *donor2 = donor_ptr[i+2]; in find_exonexon_fwd()
1053 *donor2 = donor_ptr[i+2]; in find_exonexon_rev()
1172 *donor2 = 'N'; in Chimera_find_exonexon()
1185 *donor2 = donor2_fwd; in Chimera_find_exonexon()
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| H A D | samprint.c | 881 halfdonor_dinucleotide (char *donor1, char *donor2, Substring_T donor, int sensedir) { in halfdonor_dinucleotide() argument
888 *donor1 = *donor2 = 'X'; in halfdonor_dinucleotide()
893 *donor2 = toupper(genomic[substring_end+1]); in halfdonor_dinucleotide()
897 *donor2 = toupper(complCode[(int) genomic[substring_start-2]]); in halfdonor_dinucleotide()
901 *donor1 = *donor2 = 'X'; in halfdonor_dinucleotide()
942 char donor1, donor2, acceptor2, acceptor1; in print_xt_info() local
946 halfdonor_dinucleotide(&donor1,&donor2,donor,sensedir); in print_xt_info()
958 …FPRINTF(fp,"\tXT:Z:%c%c-%c%c,%.2f,%.2f",donor1,donor2,acceptor2,acceptor1,donor_prob,acceptor_prob… in print_xt_info()
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| H A D | gmap.c | 2478 char *donor1, char *donor2, char *acceptor2, char *acceptor1, in find_breakpoint() argument
2598 &(*donor1),&(*donor2),&(*acceptor2),&(*acceptor1), in find_breakpoint()
2624 &(*donor1),&(*donor2),&(*acceptor2),&(*acceptor1), in find_breakpoint()
2677 char donor1, donor2, acceptor2, acceptor1; in check_for_local() local
3026 &donor1,&donor2,&acceptor2,&acceptor1, in check_for_local()
3121 char donor1, donor2, acceptor2, acceptor1; in check_for_chimera() local
3433 &donor1,&donor2,&acceptor2,&acceptor1, in check_for_chimera()
3467 donor1,donor2,acceptor2,acceptor1,donor_watsonp,acceptor_watsonp, in check_for_chimera()
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| /dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/MolDraw2D/test_dir/ |
| H A D | robin_hbond_smarts.smt | 7 [NX4;!H0] donor2
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