Searched refs:exonend (Results 1 – 7 of 7) sorted by relevance
/dports/biology/py-biopython/biopython-1.79/Bio/AlignIO/ |
H A D | MafIO.py | 546 for exonstart, exonend in zip(starts, ends): 547 exonlen = exonend - exonstart 551 % (exonstart, exonend, exonlen) 560 for exonstart, exonend in zip(starts, ends): 563 map(str, self._region2bin(exonstart, exonend)) 568 "(start=%d, end=%d)" % (exonstart, exonend) 595 % (possible_bins, exonstart, exonend - 1, exonend - 1) 776 for exonstart, exonend in zip(starts, ends): 778 for real_pos in range(exonstart, exonend):
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/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | get-genome.c | 598 if (exonstart <= exonend) { in genemap_print_exons() 600 exonhigh = exonend; in genemap_print_exons() 605 exonlow = exonend; in genemap_print_exons() 647 if (exonstart <= exonend) { in genemap_print_sequence() 649 exonhigh = exonend; in genemap_print_sequence() 654 exonlow = exonend; in genemap_print_sequence() 706 if (exonstart <= exonend) { in genemap_print_gsequence() 708 exonhigh = exonend; in genemap_print_gsequence() 724 exonlow = exonend; in genemap_print_gsequence() 758 Chrpos_T exonstart, exonend; in genemap_print_unique() local [all …]
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H A D | iit-read.c | 6791 if (exonend < x) { in IIT_gene_overlap() 6981 if (exonend < x) { in IIT_gene_overlapp() 7005 } else if (exonend > y) { in IIT_gene_overlapp() 7097 while (pos > exonend) { in IIT_unique_positions() 7102 exonstart = exonend = -1U; in IIT_unique_positions() 7150 while (pos < exonend) { in IIT_unique_positions() 7155 exonstart = exonend = 0; in IIT_unique_positions() 7260 while (pos > exonend) { in IIT_unique_positions_given_others() 7265 exonstart = exonend = -1U; in IIT_unique_positions_given_others() 7313 while (pos < exonend) { in IIT_unique_positions_given_others() [all …]
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H A D | splicetrie_build.c | 1237 Chrpos_T exonstart, exonend; 1249 if (sscanf(p,"%u %u",&exonstart,&exonend) != 2) { 1252 *donors = Uintlist_push(*donors,exonend); 1264 *donors = Uintlist_pop(*donors,&exonend);
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/dports/biology/stringtie/stringtie-2.1.1/gclib/ |
H A D | gff.cpp | 281 uint exonend=exonstart+exonlen-1; in BEDLine() local 282 if ((uint)exonstart>fend || exonend>fend) { in BEDLine() 283 …GMessage("Warning: BED exon %d-%d is outside record boundary at line:\n%s\n",exonstart,exonend, l); in BEDLine() 286 ex.start=exonstart;ex.end=exonend; in BEDLine()
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/dports/biology/libgff/libgff-2.0.0/src/ |
H A D | gff.cpp | 281 uint exonend=exonstart+exonlen-1; in BEDLine() local 282 if ((uint)exonstart>fend || exonend>fend) { in BEDLine() 283 …GMessage("Warning: BED exon %d-%d is outside record boundary at line:\n%s\n",exonstart,exonend, l); in BEDLine() 286 ex.start=exonstart;ex.end=exonend; in BEDLine()
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/dports/biology/gffread/gffread-0.12.7/gclib/ |
H A D | gff.cpp | 285 uint exonend=exonstart+exonlen-1; in BEDLine() local 286 if ((uint)exonstart>fend || exonend>fend) { in BEDLine() 287 …GMessage("Warning: BED exon %d-%d is outside record boundary at line:\n%s\n",exonstart,exonend, l); in BEDLine() 290 ex.start=exonstart;ex.end=exonend; in BEDLine()
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