Searched refs:exonexonpos (Results 1 – 4 of 4) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | chimera.c | 67 int exonexonpos; member 160 if (this->exonexonpos < 0) { in Chimera_donor_prob() 169 if (this->exonexonpos < 0) { in Chimera_acceptor_prob() 179 int exonexonpos, int cdna_direction, in Chimera_new() argument 190 new->exonexonpos = exonexonpos; in Chimera_new() 213 if (this->exonexonpos > 0) { in Chimera_print() 221 this->exonexonpos+1,this->donor1,this->donor2,this->acceptor2,this->acceptor1, in Chimera_print() 827 *exonexonpos = -1; in find_exonexon_fwd() 928 *exonexonpos = breakpoint_start - DONOR_MODEL_LEFT_MARGIN + i; in find_exonexon_fwd() 965 *exonexonpos = -1; in find_exonexon_rev() [all …]
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H A D | chimera.h | 36 int exonexonpos, int cdna_direction,
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H A D | stage3.h | 407 Stage3_mergeable (Stage3_T firstpart, Stage3_T secondpart, int exonexonpos, int queryntlength);
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H A D | gmap.c | 2477 find_breakpoint (int *cdna_direction, int *chimerapos, int *chimeraequivpos, int *exonexonpos, in find_breakpoint() argument 2623 if ((*exonexonpos = Chimera_find_exonexon(&found_cdna_direction,&try_cdna_direction, in find_breakpoint() 2643 breakpoint = *chimerapos = *chimeraequivpos = *exonexonpos; in find_breakpoint() 2646 *exonexonpos,comp)); in find_breakpoint() 2675 int breakpoint, chimerapos, chimeraequivpos, exonexonpos; in check_for_local() local 3025 …f ((breakpoint = find_breakpoint(&chimera_cdna_direction,&chimerapos,&chimeraequivpos,&exonexonpos, in check_for_local() 3119 int breakpoint, chimerapos, chimeraequivpos, exonexonpos; in check_for_chimera() local 3432 …f ((breakpoint = find_breakpoint(&chimera_cdna_direction,&chimerapos,&chimeraequivpos,&exonexonpos, in check_for_chimera() 3466 …*chimera = Chimera_new(new_left,new_right,chimerapos,chimeraequivpos,exonexonpos,chimera_cdna_dire… in check_for_chimera()
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