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Searched refs:exonexonpos (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dchimera.c67 int exonexonpos; member
160 if (this->exonexonpos < 0) { in Chimera_donor_prob()
169 if (this->exonexonpos < 0) { in Chimera_acceptor_prob()
179 int exonexonpos, int cdna_direction, in Chimera_new() argument
190 new->exonexonpos = exonexonpos; in Chimera_new()
213 if (this->exonexonpos > 0) { in Chimera_print()
221 this->exonexonpos+1,this->donor1,this->donor2,this->acceptor2,this->acceptor1, in Chimera_print()
827 *exonexonpos = -1; in find_exonexon_fwd()
928 *exonexonpos = breakpoint_start - DONOR_MODEL_LEFT_MARGIN + i; in find_exonexon_fwd()
965 *exonexonpos = -1; in find_exonexon_rev()
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H A Dchimera.h36 int exonexonpos, int cdna_direction,
H A Dstage3.h407 Stage3_mergeable (Stage3_T firstpart, Stage3_T secondpart, int exonexonpos, int queryntlength);
H A Dgmap.c2477 find_breakpoint (int *cdna_direction, int *chimerapos, int *chimeraequivpos, int *exonexonpos, in find_breakpoint() argument
2623 if ((*exonexonpos = Chimera_find_exonexon(&found_cdna_direction,&try_cdna_direction, in find_breakpoint()
2643 breakpoint = *chimerapos = *chimeraequivpos = *exonexonpos; in find_breakpoint()
2646 *exonexonpos,comp)); in find_breakpoint()
2675 int breakpoint, chimerapos, chimeraequivpos, exonexonpos; in check_for_local() local
3025 …f ((breakpoint = find_breakpoint(&chimera_cdna_direction,&chimerapos,&chimeraequivpos,&exonexonpos, in check_for_local()
3119 int breakpoint, chimerapos, chimeraequivpos, exonexonpos; in check_for_chimera() local
3432 …f ((breakpoint = find_breakpoint(&chimera_cdna_direction,&chimerapos,&chimeraequivpos,&exonexonpos, in check_for_chimera()
3466 …*chimera = Chimera_new(new_left,new_right,chimerapos,chimeraequivpos,exonexonpos,chimera_cdna_dire… in check_for_chimera()