Searched refs:exonlen (Results 1 – 8 of 8) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | smooth.c | 352 compute_prob (int exonlen, int intronlen, int indexsize) { in compute_prob() argument
355 if (exonlen < indexsize) { in compute_prob()
361 exonlen,indexsize,intronlen,prob)); in compute_prob()
370 prob = compute_prob(exonlen,intronlen,indexsize);
381 short_exon_bylength (int exonlen, int length_threshold) {
383 if (exonlen >= length_threshold) {
431 int exonlen; in find_internal_shorts_by_netgap() local
440 exonlen = exonmatches[i]; in find_internal_shorts_by_netgap()
441 if (exonlen < SHORTEXONLEN_NETGAP) { in find_internal_shorts_by_netgap()
479 int exonlen, intronlen; in find_internal_shorts_by_size() local
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| H A D | stage1.c | 413 int querypos5, querypos3, exonlen; in connectable_p() local
426 exonlen = querypos3 - querypos5; in connectable_p()
428 if (exonlen < matchinterval) { in connectable_p()
439 if (position3 > (Univcoord_T) maxtotallen + position5 + (Univcoord_T) exonlen) { in connectable_p()
441 position3,maxtotallen,position5,exonlen)); in connectable_p()
447 if (position5 > (Univcoord_T) maxtotallen + position3 + (Univcoord_T) exonlen) { in connectable_p()
449 position5,maxtotallen,position3,exonlen)); in connectable_p()
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| /dports/biology/py-biopython/biopython-1.79/Bio/AlignIO/ |
| H A D | MafIO.py | 547 exonlen = exonend - exonstart
548 if exonlen < 1:
551 % (exonstart, exonend, exonlen)
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | gnomon_seq.cpp | 512 …int exonlen = (exons[i].Limits().Empty()) ? exons[i].m_seq.length() : exons[i].Limits().GetLength(… in CAlignMap() local
513 diff += exonlen-(transcript_exons[i].GetTo()-transcript_exons[i].GetFrom()+1); in CAlignMap()
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| H A D | chainer.cpp | 8265 … int exonlen = alignmap.FShiftedLen(shrinkedexon,false); // length of the projection on transcript in EffectiveExonLength() local
8266 return min(exonlen,shrinkedexon.GetLength()); in EffectiveExonLength()
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| /dports/biology/stringtie/stringtie-2.1.1/gclib/ |
| H A D | gff.cpp | 266 int exonlen; in BEDLine() local
267 if (!strToInt(blen[i], exonlen) || exonlen<=0) { in BEDLine()
281 uint exonend=exonstart+exonlen-1; in BEDLine()
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| /dports/biology/libgff/libgff-2.0.0/src/ |
| H A D | gff.cpp | 266 int exonlen; in BEDLine() local
267 if (!strToInt(blen[i], exonlen) || exonlen<=0) { in BEDLine()
281 uint exonend=exonstart+exonlen-1; in BEDLine()
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| /dports/biology/gffread/gffread-0.12.7/gclib/ |
| H A D | gff.cpp | 270 int exonlen; in BEDLine() local
271 if (!strToInt(blen[i], exonlen) || exonlen<=0) { in BEDLine()
285 uint exonend=exonstart+exonlen-1; in BEDLine()
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