Searched refs:failedinput_root (Results 1 – 7 of 7) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | output.c | 70 static char *failedinput_root; variable
166 if (failedinput_root == NULL) { in filestring_fromresult_sam()
184 if (failedinput_root != NULL) { in filestring_fromresult_sam()
190 if (failedinput_root == NULL) { in filestring_fromresult_sam()
233 if (failedinput_root == NULL) { in filestring_fromresult_sam()
288 if (failedinput_root == NULL) { in filestring_fromresult_sam()
345 if (failedinput_root == NULL) { in filestring_fromresult_sam()
406 if (failedinput_root == NULL) { in filestring_fromresult_gsnap()
429 if (failedinput_root == NULL) { in filestring_fromresult_gsnap()
457 if (failedinput_root == NULL) { in filestring_fromresult_gsnap()
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| H A D | outbuffer.c | 73 static char *failedinput_root; variable
189 failedinput_open (char *failedinput_root) { in failedinput_open() argument
194 sprintf(filename,"%s.1",failedinput_root); in failedinput_open()
237 sprintf(filename,"%s",failedinput_root); in failedinput_open()
261 sprintf(filename,"%s",failedinput_root); in failedinput_open()
384 failedinput_root = failedinput_root_in; in Outbuffer_setup()
385 if (failedinput_root == NULL) { in Outbuffer_setup()
391 failedinput_open(failedinput_root); in Outbuffer_setup()
728 if (failedinput_root != NULL) { in Outbuffer_close_files()
945 if (failedinput_root != NULL) { in Outbuffer_print_filestrings()
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| H A D | gsnap.c | 511 static char *failedinput_root = NULL; variable
1996 failedinput_root = optarg; in parse_command_line()
3514 failedinput_root,output_type,merge_samechr_p,method_print_p,want_random_p); in worker_setup()
3523 maxpaths_report,failedinput_root,fastq_format_p,hide_soft_clips_p,method_print_p, in worker_setup()
3530 failedinput_root,quality_shift, in worker_setup()
3926 appendp,output_file,split_output_root,failedinput_root); in main()
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| H A D | gmap.c | 505 static char *failedinput_root = NULL; variable
4796 if (failedinput_root != NULL) { in worker_mpi_process()
5876 failedinput_root = optarg; in parse_command_line()
7038 failedinput_root,quality_shift, in main()
7052 appendp,/*output_file*/NULL,split_output_root,failedinput_root); in main()
7065 appendp,/*output_file*/NULL,split_output_root,failedinput_root); in main()
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| H A D | samprint.c | 49 static char *failedinput_root; variable
95 failedinput_root = failedinput_root_in; in SAM_setup()
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| H A D | sam_sort.c | 378 if (failedinput_root != NULL && primaryp(this->flag) == true) { in Cell_print_fromfile()
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| H A D | stage3hr.c | 232 static char *failedinput_root; variable
321 failedinput_root = failedinput_root_in; in Stage3hr_setup()
10086 if (failedinput_root != NULL) { in Stage3pair_print_end()
10153 if (failedinput_root != NULL) { in Stage3pair_print_end()
10268 if (failedinput_root != NULL) { in Stage3pair_print_end()
10391 if (failedinput_root != NULL) { in Stage3pair_print_end()
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