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Searched refs:failsonlyp (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Doutput.c28 static bool failsonlyp; variable
96 failsonlyp = failsonlyp_in; in Output_setup()
197 if (failsonlyp == true) { in filestring_fromresult_sam()
242 if (failsonlyp == true) { in filestring_fromresult_sam()
297 if (failsonlyp == true) { in filestring_fromresult_sam()
436 if (failsonlyp == true) { in filestring_fromresult_gsnap()
468 if (failsonlyp == true) { in filestring_fromresult_gsnap()
506 if (failsonlyp == true) { in filestring_fromresult_gsnap()
580 if (failsonlyp == true) { in filestring_fromresult_gsnap()
714 if (failsonlyp == true) { in Output_filestring_fromresult()
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H A Dsamprint.h63 bool nofailsp, bool failsonlyp, int quality_shift, char *sam_read_group_id);
H A Dgsnap.c471 static bool failsonlyp = false; variable
2216 failsonlyp = true; in parse_command_line()
2219 if (failsonlyp == true) { in parse_command_line()
3529 Output_setup(chromosome_iit,nofailsp,failsonlyp,quiet_if_excessive_p,maxpaths_report, in worker_setup()
H A Dsamprint.c1425 bool nofailsp, bool failsonlyp, int quality_shift, char *sam_read_group_id) { in SAM_print_paired() argument
1477 if (failsonlyp == true) { in SAM_print_paired()
H A Dsam_sort.c372 } else if (failsonlyp == true && this->split_output != OUTPUT_NM && in Cell_print_fromfile()
H A Dgmap.c437 static bool failsonlyp = false; variable
5873 failsonlyp = true; in parse_command_line()
5882 if (failsonlyp == true) { in parse_command_line()
7037 Output_setup(chromosome_iit,nofailsp,failsonlyp,quiet_if_excessive_p,maxpaths_report, in main()