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Searched refs:featureDescriptor (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/engine/
H A DFeatureContext.java108 public <T extends Feature> Object getHeader(final FeatureInput<T> featureDescriptor) { in getHeader() argument
109 return featureManager != null ? featureManager.getHeader(featureDescriptor) : null; in getHeader()
124 public <T extends Feature> List<T> getValues(final FeatureInput<T> featureDescriptor) { in getValues() argument
125 return getValues(featureDescriptor, interval); in getValues()
148 …public <T extends Feature> List<T> getValues(final FeatureInput<T> featureDescriptor, final int wi… in getValues() argument
149 … return getValues(featureDescriptor, getQueryInterval(windowLeadingBases, windowTrailingBases)); in getValues()
169 …public <T extends Feature> List<T> getValues(final FeatureInput<T> featureDescriptor, final Locata… in getValues() argument
170 if (featureManager == null || queryInterval == null || featureDescriptor == null) { in getValues()
173 return featureManager.getFeatures(featureDescriptor, queryInterval); in getValues()
235 …public <T extends Feature> List<T> getValues(final FeatureInput<T> featureDescriptor, final int fe… in getValues() argument
[all …]
H A DFeatureManager.java346 …public <T extends Feature> List<T> getFeatures( final FeatureInput<T> featureDescriptor, final Loc… in getFeatures() argument
347 final FeatureDataSource<T> dataSource = lookupDataSource(featureDescriptor); in getFeatures()
373 …ublic <T extends Feature> Iterator<T> getFeatureIterator(final FeatureInput<T> featureDescriptor) { in getFeatureIterator() argument
374 final FeatureDataSource<T> dataSource = lookupDataSource(featureDescriptor); in getFeatureIterator()
385 public <T extends Feature> Object getHeader( final FeatureInput<T> featureDescriptor ) { in getHeader() argument
386 final FeatureDataSource<T> dataSource = lookupDataSource(featureDescriptor); in getHeader()
398 …extends Feature> FeatureDataSource<T> lookupDataSource( final FeatureInput<T> featureDescriptor ) { in lookupDataSource() argument
399 …inal FeatureDataSource<T> dataSource = (FeatureDataSource<T>)featureSources.get(featureDescriptor); in lookupDataSource()
407featureDescriptor.getName(), toolInstanceSimpleClassName)); in lookupDataSource()
H A DGATKTool.java677 … final <T extends Feature> Object getHeaderForFeatures( final FeatureInput<T> featureDescriptor ) { in getHeaderForFeatures() argument
678 return hasFeatures() ? features.getHeader(featureDescriptor) : null; in getHeaderForFeatures()
/dports/java/eclipse/eclipse.platform.releng.aggregator-R4_16/eclipse.pde.build/org.eclipse.pde.build/src/org/eclipse/pde/internal/build/
H A DAssemblyInformation.java179 BuildTimeFeature featureDescriptor = iter.next(); in addRootFileProvider() local
180 if (feature == featureDescriptor) in addRootFileProvider()
182 …if (feature.getId().equals(featureDescriptor.getId()) && feature.getVersion().equals(featureDescri… in addRootFileProvider()
206 BuildTimeFeature featureDescriptor = iter.next(); in addFeature() local
207 …if (feature.getId().equals(featureDescriptor.getId()) && (feature).getVersion().equals(featureDesc… in addFeature()
219 BuildTimeFeature featureDescriptor = iter.next(); in removeFeature() local
220 …if (feature.getId().equals(featureDescriptor.getId()) && feature.getVersion().equals(featureDescri… in removeFeature()
221 features.remove(featureDescriptor); in removeFeature()