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Searched refs:genomicuc (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Ddynprog_single.h47 char *queryseq, char *queryuc, char *genomicseg, char *genomicuc,
55 char *queryseq, char *queryuc, char *genomicseg, char *genomicuc,
H A Ddynprog_single.c1085 … hits_old = BoyerMoore(&(rsequenceuc[cL]),middlelength,&(genomicuc[textleft]),textright-textleft); in Dynprog_microexon_int()
1092 assert(get_genomic_nt(candidate-2,chroffset,chrhigh,watsonp) == genomicuc[candidate - 2]); in Dynprog_microexon_int()
1093 assert(get_genomic_nt(candidate-1,chroffset,chrhigh,watsonp) == genomicuc[candidate - 1]); in Dynprog_microexon_int()
1094 …assert(get_genomic_nt(candidate+middlelength,chroffset,chrhigh,watsonp) == genomicuc[candidate + m… in Dynprog_microexon_int()
1095 …assert(get_genomic_nt(candidate+middlelength+1,chroffset,chrhigh,watsonp) == genomicuc[candidate +… in Dynprog_microexon_int()
1212 char *queryseq, char *queryuc, char *genomicseg, char *genomicuc,
1328 char *queryseq, char *queryuc, char *genomicseg, char *genomicuc,
1418 queryseq,queryuc,genomicseg,genomicuc,
H A Dgmap.c1159 Sequence_T genomicuc = NULL; in update_stage3middle_list() local
1162 Sequence_T genomicuc = NULL; in update_stage3middle_list()
1176 genomicuc = Sequence_alias(genomicseg); in update_stage3middle_list()
1184 genomicuc = Sequence_alias(genomicseg); in update_stage3middle_list()
1263 Sequence_T genomicuc = NULL; in update_stage3list() local
1266 Sequence_T genomicuc = NULL; in update_stage3list()
1389 Sequence_free(&genomicuc); in update_stage3list()
1391 Sequence_free(&genomicuc); in update_stage3list()
1825 Sequence_free(&genomicuc); in stage3_from_gregions()
1969 Sequence_free(&genomicuc); in stage3_from_gregions()
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