/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/ |
H A D | SATagBuilderUnitTests.java | 33 Assert.assertEquals(primarySup.getAttributeAsString("SA"), "3,10001,+,4S,200,*;"); in testSetReadsAsSupplementalNo() 35 Assert.assertEquals(secondarySup.getAttributeAsString("SA"), "2,10000,-,4M,100,20;"); in testSetReadsAsSupplementalNo() 46 …Assert.assertEquals(sups.get(0).getAttributeAsString("SA"), "2,10000,-,4M,100,20;4,10003,+,4D,200,… in testSetReadsAsSupplementalNo() 47 … Assert.assertTrue(sups.get(1).getAttributeAsString("SA").startsWith("2,10000,-,4M,100,20;")); in testSetReadsAsSupplementalNo() 48 Assert.assertTrue(primarySup.getAttributeAsString("SA").contains("4,10003,+,4D,200,*;")); in testSetReadsAsSupplementalNo() 49 Assert.assertTrue(primarySup.getAttributeAsString("SA").contains("3,10001,+,4S,200,*;")); in testSetReadsAsSupplementalNo() 57 Assert.assertEquals(primarySup.getAttributeAsString("SA"), "*,0,+,*,0,*;"); in testSetReadsAsSupplementalNo() 58 Assert.assertEquals(sups.get(0).getAttributeAsString("SA"), "2,10000,-,4M,100,20;"); in testSetReadsAsSupplementalNo() 72 Assert.assertEquals(testRead.getAttributeAsString("SA"), attributeVal); in testRemoveTagFunctionality() 77 Assert.assertEquals(testRead.getAttributeAsString("SA"),"4,10003,+,4D,200,0;"); in testRemoveTagFunctionality() [all …]
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/dports/cad/librepcb/librepcb-0.1.6/libs/parseagle/parseagle/deviceset/ |
H A D | connection.cpp | 9 mGate = root.getAttributeAsString("gate"); in Connection() 10 mPin = root.getAttributeAsString("pin"); in Connection() 11 mPad = root.getAttributeAsString("pad"); in Connection()
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H A D | gate.cpp | 9 mName = root.getAttributeAsString("name"); in Gate() 10 mSymbol = root.getAttributeAsString("symbol"); in Gate() 15 QString addLevelStr = root.getAttributeAsString("addlevel"); in Gate()
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H A D | device.cpp | 10 mName = root.getAttributeAsString("name"); in Device() 14 mPackage = root.getAttributeAsString("package"); in Device()
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H A D | deviceset.cpp | 9 mName = root.getAttributeAsString("name"); in DeviceSet() 12 mPrefix = root.getAttributeAsString("prefix"); in DeviceSet()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/engine/ |
H A D | ReadWalkerUnitTest.java | 56 Assert.assertEquals(read.getAttributeAsString("tr"), "PRE"); in makeReadFilter() 73 Assert.assertEquals(gatkRead.getAttributeAsString("ft"), "yes"); in makePostReadFilterTransformer() 75 Assert.assertEquals(gatkRead.getAttributeAsString("tr"), "PRE"); in makePostReadFilterTransformer() 90 Assert.assertEquals(read.getAttributeAsString("tr"), "POST");
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H A D | LocusWalkerUnitTest.java | 55 Assert.assertEquals(read.getAttributeAsString("tr"), "PRE"); in makeReadFilter() 71 Assert.assertEquals(gatkRead.getAttributeAsString("tr"), "PRE"); in makePostReadFilterTransformer() 83 …tBasePileup().getReads().forEach(read -> Assert.assertEquals(read.getAttributeAsString("tr"), "POS…
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/dports/cad/librepcb/librepcb-0.1.6/libs/parseagle/parseagle/package/ |
H A D | thtpad.cpp | 9 mName = root.getAttributeAsString("name"); in ThtPad() 21 QString shapeStr = root.getAttributeAsString("shape"); in ThtPad() 38 mRotation = Rotation(root.getAttributeAsString("rot")); in ThtPad()
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H A D | smtpad.cpp | 9 mName = root.getAttributeAsString("name"); in SmtPad() 14 mRotation = Rotation(root.getAttributeAsString("rot")); in SmtPad()
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/dports/cad/librepcb/librepcb-0.1.6/libs/parseagle/parseagle/symbol/ |
H A D | pin.cpp | 9 mName = root.getAttributeAsString("name"); in Pin() 14 QString lengthStr = root.getAttributeAsString("length"); in Pin() 31 mRotation = Rotation(root.getAttributeAsString("rot")); in Pin()
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/dports/cad/librepcb/librepcb-0.1.6/libs/parseagle/parseagle/common/ |
H A D | domelement.cpp | 29 QString DomElement::getAttributeAsString(const QString& name) const in getAttributeAsString() function in parseagle::DomElement 41 int value = getAttributeAsString(name).toInt(&ok); in getAttributeAsInt() 52 double value = getAttributeAsString(name).toDouble(&ok); in getAttributeAsDouble()
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H A D | text.cpp | 14 mRotation = Rotation(root.getAttributeAsString("rot")); in Text()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/sv/discovery/inference/ |
H A D | SegmentedCpxVariantSimpleVariantExtractorUnitTest.java | 55 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()) in caseForZeroAndOneSegmentCalls() 68 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()) in caseForZeroAndOneSegmentCalls() 91 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()) in caseForZeroAndOneSegmentCalls() 183 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()); in caseForMultiSegmentsCalls() 198 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()); in caseForMultiSegmentsCalls() 235 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()); in caseForMultiSegmentsCalls() 250 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()); in caseForMultiSegmentsCalls() 265 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()); in caseForMultiSegmentsCalls() 283 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()); in caseForMultiSegmentsCalls() 302 … .attribute(MAPPING_QUALITIES, complex.getAttributeAsString(MAPPING_QUALITIES, "")).make()); in caseForMultiSegmentsCalls() [all …]
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/varianteval/stratifications/ |
H A D | Degeneracy.java | 93 aa = eval.getAttributeAsString("refseq.variantAA", null); in getRelevantStates() 102 String newtype = eval.getAttributeAsString(key, null); in getRelevantStates() 112 aa = eval.getAttributeAsString(aakey, null); in getRelevantStates()
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H A D | FunctionalClass.java | 44 … type = FunctionalType.valueOf(eval.getAttributeAsString("refseq.functionalClass", null)); in getRelevantStates() 53 String newtypeStr = eval.getAttributeAsString(key, null); in getRelevantStates()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/ |
H A D | ApplyVQSR.java | 391 …final String prevFilterStatus = vc.getAttributeAsString(GATKVCFConstants.AS_FILTER_STATUS_KEY, nul… in generateFilterStringFromAlleles() 395 …final String prevAllelesFilterStatusString = vc.getAttributeAsString(GATKVCFConstants.AS_FILTER_ST… in generateFilterStringFromAlleles() 523 final String prevCulprits = vc.getAttributeAsString(GATKVCFConstants.AS_CULPRIT_KEY,""); in doAlleleSpecificFiltering() 525 … final String prevLodString = vc.getAttributeAsString(GATKVCFConstants.AS_VQS_LOD_KEY,""); in doAlleleSpecificFiltering() 527 … final String prevASfilters = vc.getAttributeAsString(GATKVCFConstants.AS_FILTER_STATUS_KEY,""); in doAlleleSpecificFiltering() 562 … alleleCulpritString = recalDatum.getAttributeAsString(GATKVCFConstants.CULPRIT_KEY, "."); in doAlleleSpecificFiltering() 602 … final String lodString = recalDatum.getAttributeAsString(GATKVCFConstants.VQS_LOD_KEY, null); in doSiteSpecificFiltering()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/consensus/ |
H A D | MoleculeID.java | 48 final String MITag = read.getAttributeAsString(SAMTag.MI.name()); in getMoleculeNumberOfRead() 54 final String MITag = read.getAttributeAsString(SAMTag.MI.name()); in getStrandOfRead()
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/dports/math/scilab/scilab-6.1.1/scilab/modules/graphic_objects/src/java/org/scilab/modules/graphic_objects/xmlloader/ |
H A D | XMLDomLoader.java | 534 … controller.setProperty(uib, pair.getFirst(), getAttributeAsString(prop.getNodeValue())); in createBorder() 591 … menubar = Figure.BarType.stringToEnum(getAttributeAsString(tempnode.getNodeValue())).ordinal(); in createFigure() 597 … toolbar = Figure.BarType.stringToEnum(getAttributeAsString(tempnode.getNodeValue())).ordinal(); in createFigure() 676 … controller.setProperty(fig, pair.getFirst(), getAttributeAsString(prop.getNodeValue())); in createFigure() 685 …ler.setProperty(fig, pair.getFirst(), Figure.BarType.stringToEnum(getAttributeAsString(prop.getNod… in createFigure() 688 …troller.setProperty(fig, pair.getFirst(), LayoutType.stringToEnum(getAttributeAsString(prop.getNod… in createFigure() 759 … controller.setProperty(uic, pair.getFirst(), getAttributeAsString(prop.getNodeValue())); in createUiControl() 765 …troller.setProperty(uic, pair.getFirst(), LayoutType.stringToEnum(getAttributeAsString(prop.getNod… in createUiControl() 768 …setProperty(uic, pair.getFirst(), Uicontrol.FillType.stringToEnum(getAttributeAsString(prop.getNod… in createUiControl() 816 … controller.setProperty(uim, pair.getFirst(), getAttributeAsString(prop.getNodeValue())); in createUiMenu() [all …]
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/ |
H A D | AddOriginalAlignmentTags.java | 68 read.getAttributeAsString(SAMTag.NM.name())); in addOATag() 77 return(read.getAttributeAsString(OA_TAG_NAME).split(OA_SEPARATOR)[0]); in getOAContig()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/pathseq/ |
H A D | PSBwaAligner.java | 52 …final String currentTag = read.getAttributeAsString("SA") != null ? read.getAttributeAsString("SA"… in applyAlignments()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/ |
H A D | RMSMappingQuality.java | 149 rawMQdata = vc.getAttributeAsString(getPrimaryRawKey(), null); in finalizeRawData() 160 rawMQdata = vc.getAttributeAsString(getDeprecatedRawKeyName(), null); in finalizeRawData() 165 …final String rawMQdepth = vc.getAttributeAsString(GATKVCFConstants.MAPPING_QUALITY_DEPTH_DEPRECATE… in finalizeRawData() 263 final String rawMQdata = vc.getAttributeAsString(getPrimaryRawKey(), null); in finalizeRawMQ() 270 … final String deprecatedRawMQdata = vc.getAttributeAsString(getDeprecatedRawKeyName(), null); in finalizeRawMQ()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/ |
H A D | SplitNCigarReadsUnitTest.java | 104 Assert.assertEquals("11M11S", writer.writtenReads.get(0).getAttributeAsString("MC")); in testSplitNComplexCase() 105 Assert.assertEquals("11M11S", writer.writtenReads.get(1).getAttributeAsString("MC")); in testSplitNComplexCase() 106 Assert.assertEquals("11M11S", writer.writtenReads.get(2).getAttributeAsString("MC")); in testSplitNComplexCase()
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/dports/games/supertuxkart/SuperTuxKart-1.2-src/lib/irrlicht/source/Irrlicht/ |
H A D | CMeshSceneNode.cpp | 327 io::path newMeshStr = in->getAttributeAsString("Mesh"); in deserializeAttributes() 349 core::stringc smapping = in->getAttributeAsString("HardwareMappingHint"); in deserializeAttributes() 357 core::stringc sbufferType = in->getAttributeAsString("HardwareMappingBufferType"); in deserializeAttributes()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/utils/ |
H A D | SVVCFWriter.java | 74 final String s1 = v1.getAttributeAsString(GATKSVVCFConstants.INSERTED_SEQUENCE, ""); in sortVariantsByCoordinate() 75 final String s2 = v2.getAttributeAsString(GATKSVVCFConstants.INSERTED_SEQUENCE, ""); in sortVariantsByCoordinate()
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/dports/x11-toolkits/irrlicht/irrlicht-1.8.5/source/Irrlicht/ |
H A D | CMeshSceneNode.cpp | 358 io::path newMeshStr = in->getAttributeAsString("Mesh"); in deserializeAttributes() 380 core::stringc smapping = in->getAttributeAsString("HardwareMappingHint"); in deserializeAttributes() 388 core::stringc sbufferType = in->getAttributeAsString("HardwareMappingBufferType"); in deserializeAttributes()
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