| /dports/science/votca/votca-2021.2-18560-gfbe18d971/tools/src/libtools/ |
| H A D | cubicspline.cc | 127 Index interval = getInterval(r); in Calculate()
133 Index interval = getInterval(r); in CalculateDerivative()
140 (r_[getInterval(r) + 1] - r_[getInterval(r)])); in A()
144 return -1.0 / (r_[getInterval(r) + 1] - r_[getInterval(r)]); in Aprime()
148 return (r - r_[getInterval(r)]) / in B()
149 (r_[getInterval(r) + 1] - r_[getInterval(r)]); in B()
153 return 1.0 / (r_[getInterval(r) + 1] - r_[getInterval(r)]); in Bprime()
159 double h = r_[getInterval(r) + 1] - r_[getInterval(r)]; in C()
167 double h = r_[getInterval(r) + 1] - r_[getInterval(r)]; in Cprime()
175 double h = r_[getInterval(r) + 1] - r_[getInterval(r)]; in D()
[all …]
|
| /dports/science/votca/votca-2021.2-18560-gfbe18d971/tools/tools-9c102e0/src/libtools/ |
| H A D | cubicspline.cc | 127 Index interval = getInterval(r); in Calculate()
133 Index interval = getInterval(r); in CalculateDerivative()
140 (r_[getInterval(r) + 1] - r_[getInterval(r)])); in A()
144 return -1.0 / (r_[getInterval(r) + 1] - r_[getInterval(r)]); in Aprime()
148 return (r - r_[getInterval(r)]) / in B()
149 (r_[getInterval(r) + 1] - r_[getInterval(r)]); in B()
153 return 1.0 / (r_[getInterval(r) + 1] - r_[getInterval(r)]); in Bprime()
159 double h = r_[getInterval(r) + 1] - r_[getInterval(r)]; in C()
167 double h = r_[getInterval(r) + 1] - r_[getInterval(r)]; in Cprime()
175 double h = r_[getInterval(r) + 1] - r_[getInterval(r)]; in D()
[all …]
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/sv/utils/ |
| H A D | SVIntervalTreeTest.java | 55 Assert.assertEquals(entry.getInterval(), interval); in putFindAndOrderTest()
85 Assert.assertEquals(entry.getInterval(), intervals[idx++]); in removeTest()
105 Assert.assertEquals(entry.getInterval(), intervals[idx]); in findByIndexTest()
116 Assert.assertEquals(entry.getInterval(), intervals[idx]); in getIndexTest()
125 Assert.assertEquals(testTree.min().getInterval(), intervals[0]); in minTest()
164 Assert.assertEquals(testTree.max().getInterval(), intervals[lastIdx]); in maxTest()
185 Assert.assertEquals(itr1.next().getInterval(), intervals[idx++]); in iteratorTest()
192 Assert.assertEquals(itr2.next().getInterval(), intervals[idx++]); in iteratorTest()
205 Assert.assertEquals(itr1.next().getInterval(), intervals[idx++]); in overlappersTest()
220 Assert.assertEquals(itr2.next().getInterval().getStart(), start); in overlappersTest()
[all …]
|
| /dports/math/jacop/jacop-4.8.0/src/main/java/org/jacop/search/ |
| H A D | IndomainMiddle.java | 117 … for (; iBefore < dom.noIntervals() && dom.getInterval(iBefore).max < middle; iBefore++) in indomain()
120 for (; iAfter >= 0 && dom.getInterval(iAfter).min > middle; iAfter--) in indomain()
124 … if (middle - dom.getInterval(iAfter).max > dom.getInterval(iBefore).min - middle) in indomain()
125 return dom.getInterval(iBefore).min; in indomain()
127 return dom.getInterval(iAfter).max; in indomain()
129 if (middle - dom.getInterval(iBefore).max > dom.getInterval(iAfter).min - middle) in indomain()
130 return dom.getInterval(iAfter).min; in indomain()
132 return dom.getInterval(iBefore).max; in indomain()
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/ |
| H A D | EvidenceTargetLink.java | 37 if (source.getInterval().isUpstreamOf(target.getInterval())) { in EvidenceTargetLink()
81 final SVInterval sourceInterval = source.getInterval(); in toBedpeString()
82 final SVInterval targetInterval = target.getInterval(); in toBedpeString()
91 final SVInterval sourceInterval = source.getInterval(); in getId()
92 final SVInterval targetInterval = target.getInterval(); in getId()
112 …PairedStrandedIntervals().getLeft().getInterval().getContig() == getPairedStrandedIntervals().getR… in isImpreciseDeletion()
121 …PairedStrandedIntervals().getLeft().getInterval().getContig() != getPairedStrandedIntervals().getR… in getDistance()
124 …tPairedStrandedIntervals().getRight().getInterval().getStart() - getPairedStrandedIntervals().getL… in getDistance()
|
| /dports/math/cgal/CGAL-5.3/include/CGAL/ |
| H A D | Interval_skip_list.h | 488 Interval_handle getInterval() in getInterval() function
708 removeMarkFromLevel(*m->getInterval(), in adjustMarkersOnInsert()
713 newPromoted.insert(m->getInterval()); in adjustMarkersOnInsert()
770 newPromoted.insert(m->getInterval()); in adjustMarkersOnInsert()
860 newDemoted.insert(m->getInterval()); in adjustMarkersOnDelete()
878 y->eqMarkers->insert(m->getInterval()); in adjustMarkersOnDelete()
888 tempRemoved.insert(m->getInterval()); in adjustMarkersOnDelete()
909 newDemoted.insert(m->getInterval()); in adjustMarkersOnDelete()
1271 res = x->getInterval(); in remove()
1275 res = x->getInterval(); in remove()
[all …]
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/utils/ |
| H A D | PairedStrandedIntervalTree.java | 30 …leftEntry.getValue()._2().put(pair.getRight().getInterval(), new Tuple2<>(pair.getRight().getStran… in put()
33 … rightEnds.put(pair.getRight().getInterval(), new Tuple2<>(pair.getRight().getStrand(), value)); in put()
34 … leftEnds.put(pair.getLeft().getInterval(), new Tuple2<>(pair.getLeft().getStrand(), rightEnds)); in put()
56 leftOverlappers = tree.leftEnds.overlappers(query.getLeft().getInterval()); in PairedStrandedIntervalTreeOverlapperIterator()
68 … rightOverlappers = leftEntry.getValue()._2().overlappers(query.getRight().getInterval()); in advance()
90 new StrandedInterval(leftEntry.getInterval(), in next()
92 new StrandedInterval(rightEntry.getInterval(), in next()
142 new StrandedInterval(leftEntry.getInterval(), in next()
144 new StrandedInterval(rightEntry.getInterval(), in next()
164 final int leftEndIndex = leftEnds.getIndex(pair.getLeft().getInterval()); in contains()
[all …]
|
| H A D | SVContext.java | 186 final byte[] resultBases = new byte[referenceBases.getInterval().size() - deletionSize]; in composeDeletionHaplotype()
187 final int leftPaddingSize = getStart() - referenceBases.getInterval().getStart() + 1; in composeDeletionHaplotype()
188 … final int rightPaddingSize = referenceBases.getInterval().getEnd() - getStart() - deletionSize; in composeDeletionHaplotype()
197 result.setGenomeLocation(referenceBases.getInterval()); in composeDeletionHaplotype()
204 …final byte[] resultBases = new byte[referenceBases.getInterval().size() + insertedSequence.length]; in composeInsertionHaplotype()
205 final int leftPaddingSize = getStart() - referenceBases.getInterval().getStart() + 1; in composeInsertionHaplotype()
206 final int rightPaddingSize = referenceBases.getInterval().getEnd() - getStart(); in composeInsertionHaplotype()
215 result.setGenomeLocation(referenceBases.getInterval()); in composeInsertionHaplotype()
|
| /dports/mail/phplist/phplist-3.6.6/public_html/lists/base/vendor/symfony/symfony/src/Symfony/Component/Serializer/Tests/Normalizer/ |
| H A D | DateIntervalNormalizerTest.php | 58 …$this->assertEquals($output, $this->normalizer->normalize($this->getInterval($input), null, [DateI…
66 …ssertEquals($output, (new DateIntervalNormalizer($format))->normalize($this->getInterval($input)));
92 …$this->assertDateIntervalEquals($this->getInterval($output), $this->normalizer->denormalize($input…
100 …$this->assertDateIntervalEquals($this->getInterval($output), (new DateIntervalNormalizer($format))…
133 private function getInterval($data) function in Symfony\\Component\\Serializer\\Tests\\Normalizer\\DateIntervalNormalizerTest
|
| /dports/finance/prestashop/prestashop/vendor/symfony/symfony/src/Symfony/Component/Serializer/Tests/Normalizer/ |
| H A D | DateIntervalNormalizerTest.php | 58 …$this->assertEquals($output, $this->normalizer->normalize($this->getInterval($input), null, [DateI…
66 …ssertEquals($output, (new DateIntervalNormalizer($format))->normalize($this->getInterval($input)));
92 …$this->assertDateIntervalEquals($this->getInterval($output), $this->normalizer->denormalize($input…
100 …$this->assertDateIntervalEquals($this->getInterval($output), (new DateIntervalNormalizer($format))…
133 private function getInterval($data) function in Symfony\\Component\\Serializer\\Tests\\Normalizer\\DateIntervalNormalizerTest
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/reference/ |
| H A D | ReferenceBases.java | 47 return getInterval().equals(that.getInterval()); in equals()
54 result = 31 * result + getInterval().hashCode(); in hashCode()
62 public SimpleInterval getInterval() { in getInterval() method in ReferenceBases
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/engine/ |
| H A D | Shard.java | 22 SimpleInterval getInterval(); in getInterval() method
35 return getInterval().getStart(); in getStart()
43 return getInterval().getEnd(); in getEnd()
51 return getInterval().getContig(); in getContig()
|
| /dports/audio/faust/faust-2.37.3/compiler/signals/ |
| H A D | sigtype.cpp | 140 … st1->boolean() | st2->boolean(), reunion(st1->getInterval(), st2->getInterval())); in operator |()
172 … (st1->boolean() == st2->boolean()) && (st1->getInterval().lo == st2->getInterval().lo) && in operator ==()
173 (st1->getInterval().hi == st2->getInterval().hi) && in operator ==()
174 …(st1->getInterval().valid == st2->getInterval().valid) && st1->getRes().valid == st2->getRes().val… in operator ==()
295 interval i = t->getInterval(); in checkDelayInterval()
360 elems.push_back(tree(st->getInterval().valid)); in codeSimpleType()
361 elems.push_back(tree(st->getInterval().lo)); in codeSimpleType()
362 elems.push_back(tree(st->getInterval().hi)); in codeSimpleType()
|
| /dports/security/vault/vault-1.8.2/vendor/github.com/hashicorp/vic/vendor/github.com/docker/docker/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/devel/gitlab-runner/gitlab-runner-8925d9a06fd8e452e2161a768462652a2a13111f/vendor/github.com/docker/docker/moby-20.10.2/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/sysutils/istio/istio-1.6.7/vendor/github.com/docker/docker/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/net-im/dendrite/dendrite-0.5.1/vendor/github.com/docker/docker/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/sysutils/docker/docker-ce-18.09.5/components/engine/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/databases/cayley/cayley-0.7.5-2-gcf576ba/vendor/github.com/docker/docker/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/databases/cayley/cayley-0.7.5-2-gcf576ba/vendor/github.com/docker/libnetwork/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/databases/timescaledb-backup/timescaledb-backup-0.1.1/vendor/github.com/docker/docker/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/net-mgmt/promscale/promscale-0.6.2/vendor/github.com/docker/docker/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/net-mgmt/prometheus2/prometheus-2.30.3/vendor/github.com/docker/docker/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/sysutils/helm/helm-3.5.2/vendor/github.com/docker/docker/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|
| /dports/security/vault/vault-1.8.2/vendor/github.com/docker/docker/vendor/github.com/armon/go-metrics/ |
| H A D | inmem.go | 131 intv := i.getInterval()
140 intv := i.getInterval()
150 intv := i.getInterval()
165 intv := i.getInterval()
182 i.getInterval()
227 func (i *InmemSink) getInterval() *IntervalMetrics { func
|