Searched refs:hardclip5_high (Results 1 – 3 of 3) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | samprint.c | 1529 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired() 1655 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired() 1853 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired() 1915 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired() 1967 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired() 2159 hardclip5_low = hardclip5_high = 0; in SAM_print_paired() 2187 hardclip5_low = hardclip5_high = 0; in SAM_print_paired() 2216 hardclip5_low = hardclip5_high = 0; in SAM_print_paired() 2364 hardclip5_low = hardclip5_high = 0; in SAM_print_paired() 2418 hardclip5_low = hardclip5_high = 0; in SAM_print_paired() [all …]
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H A D | stage3hr.c | 2784 *hardclip5_high = ilength5_high - common_shift; in Stage3pair_overlap() 2787 *hardclip5_low,*hardclip5_high,*hardclip3_low,*hardclip3_high)); in Stage3pair_overlap() 2802 *hardclip5_high = ilength5_high /*- common_shift*/; in Stage3pair_overlap() 2838 *hardclip5_high = ilength5_high /*- common_shift*/; in Stage3pair_overlap() 2850 if (*hardclip5_high < 0) { in Stage3pair_overlap() 2851 *hardclip5_high = 0; in Stage3pair_overlap() 3006 *hardclip5_high = ilength5_high - common_shift; in Stage3pair_overlap() 3024 *hardclip5_high = ilength5_high /*- common_shift*/; in Stage3pair_overlap() 3060 *hardclip5_high = ilength5_high /*- common_shift*/; in Stage3pair_overlap() 3072 if (*hardclip5_high < 0) { in Stage3pair_overlap() [all …]
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H A D | stage3hr.h | 290 Stage3pair_overlap (int *hardclip5_low, int *hardclip5_high, int *hardclip3_low, int *hardclip3_hig… 448 int hardclip5_low, int hardclip5_high, int hardclip3_low, int hardclip3_high);
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