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Searched refs:hardclip5_high (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dsamprint.c1529 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired()
1655 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired()
1853 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired()
1915 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired()
1967 /*hardclip_low*/hardclip5_low,/*hardclip_high*/hardclip5_high, in SAM_print_paired()
2159 hardclip5_low = hardclip5_high = 0; in SAM_print_paired()
2187 hardclip5_low = hardclip5_high = 0; in SAM_print_paired()
2216 hardclip5_low = hardclip5_high = 0; in SAM_print_paired()
2364 hardclip5_low = hardclip5_high = 0; in SAM_print_paired()
2418 hardclip5_low = hardclip5_high = 0; in SAM_print_paired()
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H A Dstage3hr.c2784 *hardclip5_high = ilength5_high - common_shift; in Stage3pair_overlap()
2787 *hardclip5_low,*hardclip5_high,*hardclip3_low,*hardclip3_high)); in Stage3pair_overlap()
2802 *hardclip5_high = ilength5_high /*- common_shift*/; in Stage3pair_overlap()
2838 *hardclip5_high = ilength5_high /*- common_shift*/; in Stage3pair_overlap()
2850 if (*hardclip5_high < 0) { in Stage3pair_overlap()
2851 *hardclip5_high = 0; in Stage3pair_overlap()
3006 *hardclip5_high = ilength5_high - common_shift; in Stage3pair_overlap()
3024 *hardclip5_high = ilength5_high /*- common_shift*/; in Stage3pair_overlap()
3060 *hardclip5_high = ilength5_high /*- common_shift*/; in Stage3pair_overlap()
3072 if (*hardclip5_high < 0) { in Stage3pair_overlap()
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H A Dstage3hr.h290 Stage3pair_overlap (int *hardclip5_low, int *hardclip5_high, int *hardclip3_low, int *hardclip3_hig…
448 int hardclip5_low, int hardclip5_high, int hardclip3_low, int hardclip3_high);