Searched refs:hts_base_mod_state (Results 1 – 9 of 9) sorted by relevance
/dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
H A D | sam.h | 1988 typedef struct hts_base_mod_state hts_base_mod_state; typedef 2010 int bam_plp_insertion_mod(const bam_pileup1_t *p, hts_base_mod_state *m, 2173 hts_base_mod_state *hts_base_mod_state_alloc(void); 2182 void hts_base_mod_state_free(hts_base_mod_state *state); 2195 int bam_parse_basemod(const bam1_t *b, hts_base_mod_state *state); 2215 int bam_mods_at_next_pos(const bam1_t *b, hts_base_mod_state *state, 2236 int bam_next_basemod(const bam1_t *b, hts_base_mod_state *state, 2259 int bam_mods_at_qpos(const bam1_t *b, int qpos, hts_base_mod_state *state,
|
/dports/biology/htslib/htslib-1.14/htslib/ |
H A D | sam.h | 1988 typedef struct hts_base_mod_state hts_base_mod_state; typedef 2010 int bam_plp_insertion_mod(const bam_pileup1_t *p, hts_base_mod_state *m, 2173 hts_base_mod_state *hts_base_mod_state_alloc(void); 2182 void hts_base_mod_state_free(hts_base_mod_state *state); 2195 int bam_parse_basemod(const bam1_t *b, hts_base_mod_state *state); 2215 int bam_mods_at_next_pos(const bam1_t *b, hts_base_mod_state *state, 2236 int bam_next_basemod(const bam1_t *b, hts_base_mod_state *state, 2259 int bam_mods_at_qpos(const bam1_t *b, int qpos, hts_base_mod_state *state,
|
/dports/biology/htslib/htslib-1.14/test/ |
H A D | pileup_mod.c | 75 hts_base_mod_state *m = hts_base_mod_state_alloc(); in pileup_cd_create() 106 hts_base_mod_state *m = p->cd.p; in process_mod_pileup1() 153 hts_base_mod_state *m = p->cd.p; in process_mod_pileup2()
|
H A D | test_mod.c | 53 hts_base_mod_state *m = hts_base_mod_state_alloc(); in main()
|
/dports/biology/py-pysam/pysam-0.18.0/htslib/ |
H A D | sam.c | 5174 hts_base_mod_state *m, in bam_plp_insertion_mod() 6007 struct hts_base_mod_state { struct 6020 hts_base_mod_state *hts_base_mod_state_alloc(void) { in hts_base_mod_state_alloc() argument 6021 return calloc(1, sizeof(hts_base_mod_state)); in hts_base_mod_state_alloc() 6024 void hts_base_mod_state_free(hts_base_mod_state *state) { in hts_base_mod_state_free() 6055 int bam_parse_basemod(const bam1_t *b, hts_base_mod_state *state) { in bam_parse_basemod() 6230 int bam_mods_at_next_pos(const bam1_t *b, hts_base_mod_state *state, in bam_mods_at_next_pos() 6309 int bam_next_basemod(const bam1_t *b, hts_base_mod_state *state, in bam_next_basemod() 6373 int bam_mods_at_qpos(const bam1_t *b, int qpos, hts_base_mod_state *state, in bam_mods_at_qpos()
|
/dports/biology/htslib/htslib-1.14/ |
H A D | sam.c | 5174 hts_base_mod_state *m, in bam_plp_insertion_mod() 6007 struct hts_base_mod_state { struct 6020 hts_base_mod_state *hts_base_mod_state_alloc(void) { in hts_base_mod_state_alloc() argument 6021 return calloc(1, sizeof(hts_base_mod_state)); in hts_base_mod_state_alloc() 6024 void hts_base_mod_state_free(hts_base_mod_state *state) { in hts_base_mod_state_free() 6055 int bam_parse_basemod(const bam1_t *b, hts_base_mod_state *state) { in bam_parse_basemod() 6230 int bam_mods_at_next_pos(const bam1_t *b, hts_base_mod_state *state, in bam_mods_at_next_pos() 6309 int bam_next_basemod(const bam1_t *b, hts_base_mod_state *state, in bam_next_basemod() 6373 int bam_mods_at_qpos(const bam1_t *b, int qpos, hts_base_mod_state *state, in bam_mods_at_qpos()
|
/dports/biology/py-pysam/pysam-0.18.0/samtools/ |
H A D | bam_plcmd.c | 75 hts_base_mod_state *m = p->cd.p; in pileup_seq() 347 hts_base_mod_state *m = hts_base_mod_state_alloc(); in pileup_cd_create()
|
H A D | bam_plcmd.c.pysam.c | 77 hts_base_mod_state *m = p->cd.p; in pileup_seq() 349 hts_base_mod_state *m = hts_base_mod_state_alloc(); in pileup_cd_create()
|
/dports/biology/samtools/samtools-1.14/ |
H A D | bam_plcmd.c | 75 hts_base_mod_state *m = p->cd.p; in pileup_seq() 347 hts_base_mod_state *m = hts_base_mod_state_alloc(); in pileup_cd_create()
|