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Searched refs:hts_base_mod_state (Results 1 – 9 of 9) sorted by relevance

/dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/
H A Dsam.h1988 typedef struct hts_base_mod_state hts_base_mod_state; typedef
2010 int bam_plp_insertion_mod(const bam_pileup1_t *p, hts_base_mod_state *m,
2173 hts_base_mod_state *hts_base_mod_state_alloc(void);
2182 void hts_base_mod_state_free(hts_base_mod_state *state);
2195 int bam_parse_basemod(const bam1_t *b, hts_base_mod_state *state);
2215 int bam_mods_at_next_pos(const bam1_t *b, hts_base_mod_state *state,
2236 int bam_next_basemod(const bam1_t *b, hts_base_mod_state *state,
2259 int bam_mods_at_qpos(const bam1_t *b, int qpos, hts_base_mod_state *state,
/dports/biology/htslib/htslib-1.14/htslib/
H A Dsam.h1988 typedef struct hts_base_mod_state hts_base_mod_state; typedef
2010 int bam_plp_insertion_mod(const bam_pileup1_t *p, hts_base_mod_state *m,
2173 hts_base_mod_state *hts_base_mod_state_alloc(void);
2182 void hts_base_mod_state_free(hts_base_mod_state *state);
2195 int bam_parse_basemod(const bam1_t *b, hts_base_mod_state *state);
2215 int bam_mods_at_next_pos(const bam1_t *b, hts_base_mod_state *state,
2236 int bam_next_basemod(const bam1_t *b, hts_base_mod_state *state,
2259 int bam_mods_at_qpos(const bam1_t *b, int qpos, hts_base_mod_state *state,
/dports/biology/htslib/htslib-1.14/test/
H A Dpileup_mod.c75 hts_base_mod_state *m = hts_base_mod_state_alloc(); in pileup_cd_create()
106 hts_base_mod_state *m = p->cd.p; in process_mod_pileup1()
153 hts_base_mod_state *m = p->cd.p; in process_mod_pileup2()
H A Dtest_mod.c53 hts_base_mod_state *m = hts_base_mod_state_alloc(); in main()
/dports/biology/py-pysam/pysam-0.18.0/htslib/
H A Dsam.c5174 hts_base_mod_state *m, in bam_plp_insertion_mod()
6007 struct hts_base_mod_state { struct
6020 hts_base_mod_state *hts_base_mod_state_alloc(void) { in hts_base_mod_state_alloc() argument
6021 return calloc(1, sizeof(hts_base_mod_state)); in hts_base_mod_state_alloc()
6024 void hts_base_mod_state_free(hts_base_mod_state *state) { in hts_base_mod_state_free()
6055 int bam_parse_basemod(const bam1_t *b, hts_base_mod_state *state) { in bam_parse_basemod()
6230 int bam_mods_at_next_pos(const bam1_t *b, hts_base_mod_state *state, in bam_mods_at_next_pos()
6309 int bam_next_basemod(const bam1_t *b, hts_base_mod_state *state, in bam_next_basemod()
6373 int bam_mods_at_qpos(const bam1_t *b, int qpos, hts_base_mod_state *state, in bam_mods_at_qpos()
/dports/biology/htslib/htslib-1.14/
H A Dsam.c5174 hts_base_mod_state *m, in bam_plp_insertion_mod()
6007 struct hts_base_mod_state { struct
6020 hts_base_mod_state *hts_base_mod_state_alloc(void) { in hts_base_mod_state_alloc() argument
6021 return calloc(1, sizeof(hts_base_mod_state)); in hts_base_mod_state_alloc()
6024 void hts_base_mod_state_free(hts_base_mod_state *state) { in hts_base_mod_state_free()
6055 int bam_parse_basemod(const bam1_t *b, hts_base_mod_state *state) { in bam_parse_basemod()
6230 int bam_mods_at_next_pos(const bam1_t *b, hts_base_mod_state *state, in bam_mods_at_next_pos()
6309 int bam_next_basemod(const bam1_t *b, hts_base_mod_state *state, in bam_next_basemod()
6373 int bam_mods_at_qpos(const bam1_t *b, int qpos, hts_base_mod_state *state, in bam_mods_at_qpos()
/dports/biology/py-pysam/pysam-0.18.0/samtools/
H A Dbam_plcmd.c75 hts_base_mod_state *m = p->cd.p; in pileup_seq()
347 hts_base_mod_state *m = hts_base_mod_state_alloc(); in pileup_cd_create()
H A Dbam_plcmd.c.pysam.c77 hts_base_mod_state *m = p->cd.p; in pileup_seq()
349 hts_base_mod_state *m = hts_base_mod_state_alloc(); in pileup_cd_create()
/dports/biology/samtools/samtools-1.14/
H A Dbam_plcmd.c75 hts_base_mod_state *m = p->cd.p; in pileup_seq()
347 hts_base_mod_state *m = hts_base_mod_state_alloc(); in pileup_cd_create()