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Name Date Size #Lines LOC

..03-May-2022-

base_mods/H22-Oct-2021-378323

bcf-sr/H22-Oct-2021-8276

fastq/H22-Oct-2021-625536

fuzz/H22-Oct-2021-153113

longrefs/H22-Oct-2021-397391

maintainer/H22-Oct-2021-193122

mpileup/H03-May-2022-1,001940

sam_filter/H07-May-2022-153109

tabix/H03-May-2022-306257

auxf#values.samH A D17-Jun-2016751 65

auxf.faH A D20-Dec-201429 32

auxf.fa.faiH A D20-Dec-201418 21

c1#bounds.samH A D20-Sep-2013148 54

c1#clip.samH A D22-Jul-2013337 98

c1#noseq.samH A D08-Apr-2015433 1110

c1#pad1.samH A D22-Jul-2013388 1110

c1#pad2.samH A D18-Feb-2015527 1514

c1#pad3.samH A D18-Feb-2015665 1514

c1#unknown.samH A D10-Mar-2015429 109

c1.faH A D22-Jul-201315 32

c1.fa.faiH A D22-Jul-201314 21

c2#pad.samH A D29-Apr-2015847 2726

c2.faH A D29-Apr-201514 32

c2.fa.faiH A D29-Apr-201512 21

ce#1.samH A D18-Feb-2015341 32

ce#1000.samH A D09-Mar-2018315.1 KiB1,0061,005

ce#2.samH A D18-Feb-2015645 43

ce#5.samH A D18-Feb-20151.8 KiB1211

ce#5b.samH A D18-Feb-20151.8 KiB1312

ce#large_seq.samH A D18-Feb-20152 MiB43

ce#supp.samH A D08-Apr-2015547 76

ce#tag_depadded.samH A D18-Feb-20151.6 KiB1211

ce#tag_padded.samH A D18-Feb-20151.6 KiB1211

ce#unmap.samH A D22-Jul-20131.3 KiB76

ce#unmap1.samH A D18-Feb-20152.7 KiB2120

ce#unmap2.samH A D18-Feb-20155.4 KiB3029

ce.faH A D22-Jul-20131 MiB20,80420,803

ce.fa.faiH A D22-Jul-2013230 87

compare_sam.plH A D03-May-20226.3 KiB214130

cross_validate.shH A D19-Nov-20194.2 KiB14676

faidx.faH A D18-Jun-2018289 2218

fastqs.fqH A D21-May-201847.5 KiB501500

fieldarith.cH A D07-Jan-20202.4 KiB7540

fieldarith.samH A D18-May-2020910 1615

formatcols.vcfH A D16-Feb-2021241 76

formatmissing-out.vcfH A D09-Sep-2016226 76

formatmissing.vcfH A D09-Sep-2016226 76

header_syms.plH A D03-May-20223.5 KiB10637

hfile.cH A D07-Jan-202011.7 KiB312244

hts_endian.cH A D07-Jan-202017.2 KiB514413

index.samH A D30-Jan-201952.9 KiB191190

index.vcfH A D20-Jun-201867.3 KiB729728

index_dos.samH A D07-Oct-202053.1 KiB191190

md#1.samH A D20-May-20161,017 1312

md.faH A D20-May-201645 42

md.fa.faiH A D20-May-201613 21

no_hdr_sq_1.expected.samH A D04-Jul-20192 KiB1716

noroundtrip-out.vcfH A D30-Mar-2016325 109

noroundtrip.vcfH A D30-Mar-2016271 98

pileup.cH A D07-Jan-20206.8 KiB257178

pileup_mod.cH A D10-Aug-20216.9 KiB226155

plugins-dlhts.cH A D05-Nov-20205 KiB187129

range.outH A D31-Jan-20183.4 KiB1817

realn01.faH A D09-Feb-2018719 1413

realn01.fa.faiH A D09-Feb-201821 21

realn01.samH A D09-Feb-20181.8 KiB98

realn01_exp-a.samH A D09-Feb-20182.1 KiB98

realn01_exp-e.samH A D09-Feb-20182.1 KiB98

realn01_exp.samH A D09-Feb-20182.1 KiB98

realn02-r.samH A D09-Feb-20183.7 KiB1312

realn02.faH A D09-Feb-20184.2 KiB7271

realn02.fa.faiH A D09-Feb-201817 21

realn02.samH A D09-Feb-20182.8 KiB1312

realn02_exp-a.samH A D09-Feb-20183.7 KiB1312

realn02_exp-e.samH A D09-Feb-20183.7 KiB1312

realn02_exp.samH A D09-Feb-20183.7 KiB1312

sam.cH A D25-Nov-202077.1 KiB2,2151,773

simple_test_driver.shH A D19-Aug-20205.5 KiB192131

tabix.outH A D18-Apr-201998 21

test-bcf-sr.cH A D17-Jul-20205 KiB152108

test-bcf-sr.plH A D03-May-202219.1 KiB632542

test-bcf-translate.cH A D16-Sep-20208.8 KiB20480

test-bcf-translate.outH A D29-Aug-2017869 1918

test-logging.plH A D03-May-20222.5 KiB9761

test-parse-reg.cH A D07-Jan-20206.9 KiB205126

test-regidx.cH A D17-Jul-202016.5 KiB474364

test-vcf-api.cH A D22-Jun-202123.3 KiB648514

test-vcf-api.outH A D10-Apr-20192 KiB3029

test-vcf-hdr-in.vcfH A D24-Mar-20162 KiB2625

test-vcf-hdr.outH A D24-Mar-20161.3 KiB1716

test-vcf-sweep.cH A D29-Jan-20213.8 KiB11662

test-vcf-sweep.outH A D05-Sep-201392 54

test.plH A D03-May-202238.2 KiB1,030792

test_bgzf.cH A D20-May-202030.9 KiB1,009796

test_expr.cH A D30-Nov-20206.8 KiB234175

test_index.cH A D23-Oct-20202.8 KiB8449

test_introspection.cH A D22-Jun-20213.2 KiB8851

test_kfunc.cH A D17-Aug-20203.6 KiB8953

test_kstring.cH A D29-Sep-202011.8 KiB424328

test_mod.cH A D04-Aug-20213.8 KiB13088

test_realn.cH A D25-Sep-20204.9 KiB171128

test_str2int.cH A D25-Sep-20208.7 KiB226169

test_view.cH A D19-Oct-202014.5 KiB433359

thrash_threads1.cH A D07-Jan-20201.6 KiB4919

thrash_threads2.cH A D07-Jan-20201.6 KiB4717

thrash_threads3.cH A D07-Jan-20201.7 KiB5222

thrash_threads4.cH A D07-Jan-20202.2 KiB7033

thrash_threads5.cH A D07-Jan-20202.1 KiB6836

thrash_threads6.cH A D07-Jan-20203.3 KiB11074

thrash_threads7.cH A D07-Jan-20203.6 KiB12177

thread_pool.mdH A D03-Mar-20172.9 KiB5943

vcf_meta_meta.vcfH A D09-Apr-2021427 109

with-shlib.shH A D16-May-20202.1 KiB6629

xx#MD.samH A D07-Nov-20181 KiB2322

xx#MD2.samH A D07-Nov-20181.1 KiB2120

xx#blank.samH A D28-Aug-201971 21

xx#large_aux.samH A D22-Jul-2013884.3 KiB54

xx#large_aux2.samH A D22-Jul-2013651 1211

xx#minimal.samH A D22-Jul-2013254 1110

xx#pair.samH A D22-Jul-2013304 87

xx#repeated.samH A D14-Jan-2016298 87

xx#rg.samH A D22-Jul-2013517 1413

xx#tlen.samH A D29-Apr-20151 KiB3534

xx#tlen2.samH A D29-Apr-20151.1 KiB3736

xx#triplet.samH A D22-Jul-2013267 87

xx#unsorted.samH A D22-Jul-2013320 98

xx.faH A D07-Nov-201886 86

xx.fa.faiH A D07-Nov-201844 43