insert_gapholders (reference) in projects: dports

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Searched refs:insert_gapholders (Results 1 – 2 of 2) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A D	stage3.c	1532 insert_gapholders (List_T pairs, char queryseq_ptr, char queryuc_ptr, in insert_gapholders() function 13553 path = insert_gapholders(pairs,queryseq_ptr,queryuc_ptr,chroffset,chrhigh,watsonp,genestrand, in path_compute_dir() 13585 path = insert_gapholders(pairs,queryseq_ptr,queryuc_ptr,chroffset,chrhigh,watsonp,genestrand, in path_compute_dir() 13624 path = insert_gapholders(pairs,queryseq_ptr,queryuc_ptr,chroffset,chrhigh,watsonp,genestrand, in path_compute_dir() 13668 path = insert_gapholders(pairs,queryseq_ptr,queryuc_ptr,chroffset,chrhigh,watsonp,genestrand, in path_compute_dir() 13707 path = insert_gapholders(pairs,queryseq_ptr,queryuc_ptr,chroffset,chrhigh,watsonp,genestrand, in path_compute_dir() 13773 path = insert_gapholders(pairs,queryseq_ptr,queryuc_ptr,chroffset,chrhigh,watsonp,genestrand, in path_compute_dir() 13792 path = insert_gapholders(pairs,queryseq_ptr,queryuc_ptr,chroffset,chrhigh,watsonp,genestrand, in path_compute_dir() 13937 path = insert_gapholders(pairs,queryseq_ptr,queryuc_ptr,chroffset,chrhigh,watsonp,genestrand, in path_compute_end5() 14085 path = insert_gapholders(pairs,queryseq_ptr,queryuc_ptr,chroffset,chrhigh,watsonp,genestrand, in path_compute_end3() [all …]
/dports/biology/gmap/gmap-2020-09-12/
H A D	ChangeLog	`1490 continuous solution, and to remove indels in insert_gapholders 2846 * stage3.c: For final call to insert_gapholders from path_compute_final, 7791 * stage3.c: Replaced one call to insert_gapholders with List_reverse 8575 algorithm, including reduction of insert_gapholders and early 9098 * stage3.c: Allowing insert_gapholders to fill in single mismatches, rather`