invertmode (reference) in projects: dports

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Searched refs:invertmode (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A D	pair.h	`89 bool genomefirstp, int invertmode, bool nointronlenp); 92 …int_continuous_byexon (Filestring_T fp, struct T *pairs, int npairs, bool watsonp, int invertmode); 96 int invertmode, bool nointronlenp, int wraplength); 112 bool watsonp, int invertmode); 148 bool watsonp, int cdna_direction, bool genomefirstp, int invertmode);`
H A D	output.c	`40 static int invertmode; variable 110 invertmode = invertmode_in; in Output_setup() 846 /flipgenomep/true,invertmode,nointronlenp,wraplength); in Output_filestring_fromresult() 875 /flipgenomep/true,invertmode,nointronlenp,wraplength); in Output_filestring_fromresult() 892 /flipgenomep/true,invertmode,nointronlenp,wraplength); in Output_filestring_fromresult() 1026 Stage3_print_coordinates(fp,stage3array[pathnum-1],chromosome_iit,invertmode); in Output_filestring_fromresult()`
H A D	pair.c	989 } else if (invertmode == 0) { in Pair_print_continuous() 991 } else if (invertmode == 1) { in Pair_print_continuous() 993 } else if (invertmode == 2) { in Pair_print_continuous() 1099 } else if (invertmode == 0) { in Pair_print_continuous_byexon() 1101 } else if (invertmode == 1) { in Pair_print_continuous_byexon() 1103 } else if (invertmode == 2) { in Pair_print_continuous_byexon() 1186 } else if (invertmode == 0) { in Pair_print_alignment() 1190 } else if (invertmode == 1) { in Pair_print_alignment() 1207 if (invertmode == 2) { in Pair_print_alignment() 1443 if (invertmode == 2) { in Pair_print_coordinates() [all …]
H A D	stage3.h	`277 int invertmode, bool nointronlenp, int wraplength); 280 Stage3_print_coordinates (Filestring_T fp, T this, Univ_IIT_T chromosome_iit, int invertmode);`
H A D	gmap.c	`464 static int invertmode = 0; variable 5386 Stage3_print_coordinates(fp,stage3array[0],chromosome_iit,invertmode); 5397 invertmode,nointronlenp,wraplength, 6321 case 'I': invertmode = atoi(check_valid_int(optarg)); break; in parse_command_line() 7039 printtype,invertmode,wraplength,ngap,nointronlenp,sam_paired_p,cds_startpos, in main()`
H A D	stage3.c	6729 char *dbversion, bool showalignp, int invertmode, bool nointronlenp, int wraplength) { 6751 chromosome_iit,this->watsonp,invertmode,nointronlenp,wraplength); 6929 int invertmode, bool nointronlenp, int wraplength) { in Stage3_print_alignment() argument 6932 genome,chromosome_iit,this->watsonp,this->cdna_direction,genomefirstp,invertmode); in Stage3_print_alignment() 6933 Pair_print_continuous_byexon(fp,this->pairarray,this->npairs,this->watsonp,invertmode); in Stage3_print_alignment() 6937 genomefirstp,invertmode,nointronlenp); in Stage3_print_alignment() 6941 genome,chromosome_iit,this->watsonp,this->cdna_direction,genomefirstp,invertmode); in Stage3_print_alignment() 6944 chromosome_iit,this->watsonp,invertmode,nointronlenp,wraplength); in Stage3_print_alignment() 6954 Stage3_print_coordinates (Filestring_T fp, T this, Univ_IIT_T chromosome_iit, int invertmode) { in Stage3_print_coordinates() argument 6956 chromosome_iit,this->watsonp,invertmode); in Stage3_print_coordinates()