| /dports/biology/iqtree/IQ-TREE-2.0.6/alignment/ |
| H A D | pattern.h | 71 inline bool isInformative() { in isInformative() function
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/ |
| H A D | LikelihoodRankSumTest.java | 38 if ( ! bestAllele.isInformative() ) { in getElementForRead()
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| H A D | UniqueAltReadCount.java | 61 .filter(ba -> ba.allele.equals(altAllele) && ba.isInformative()) in annotate()
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| H A D | PerAlleleAnnotation.java | 40 .filter(ba -> ba.isInformative() && isUsableRead(ba.evidence)) in annotate()
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| H A D | BaseQualityHistogram.java | 35 .filter(ba -> ba.isInformative() && isUsableRead(ba.evidence)) in annotate()
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| H A D | OriginalAlignment.java | 58 … ba.evidence.hasAttribute(AddOriginalAlignmentTags.OA_TAG_NAME) && ba.isInformative() && ba.allele… in annotate()
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| H A D | DepthPerSampleHC.java | 82 …ettedLikelihoods.bestAllelesBreakingTies(sample).stream().filter(ba -> ba.isInformative()).count(); in annotate()
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| H A D | RankSumTest.java | 63 if (bestAllele.isInformative() && isUsableRead(read, vc)) { in fillQualsFromLikelihood()
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| H A D | DepthPerAlleleBySample.java | 71 .filter(ba -> ba.isInformative()) in annotateWithLikelihoods()
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| H A D | StrandBiasTest.java | 149 .filter(ba -> ba.isInformative()) in getContingencyTable()
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| /dports/science/R-cran-Epi/Epi/R/ |
| H A D | clogistic.R | 31 isInformative <- function(Xsplit, ysplit, strata) function
70 info <- isInformative(Xsplit, ysplit, strata)
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| /dports/science/agrum/aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320/src/agrum/BN/learning/aprioris/ |
| H A D | aprioriSmoothing.h | 133 virtual bool isInformative() const final;
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| H A D | aprioriNoApriori.h | 136 virtual bool isInformative() const final;
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| H A D | aprioriBDeu.h | 147 virtual bool isInformative() const final;
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| H A D | apriori.h | 112 virtual bool isInformative() const = 0;
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| H A D | aprioriDirichletFromDatabase.h | 148 virtual bool isInformative() const final;
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| H A D | aprioriNoApriori_tpl.h | 148 INLINE bool AprioriNoApriori< ALLOC >::isInformative() const { in isInformative() function
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| H A D | aprioriSmoothing_tpl.h | 142 INLINE bool AprioriSmoothing< ALLOC >::isInformative() const { in isInformative() function
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| H A D | aprioriBDeu_tpl.h | 158 INLINE bool AprioriBDeu< ALLOC >::isInformative() const { in isInformative() function
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| /dports/science/agrum/aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320/src/agrum/BN/learning/scores_and_tests/ |
| H A D | scoreBIC_tpl.h | 194 const bool informative_external_apriori = this->apriori_->isInformative(); in score_()
270 if (this->apriori_->isInformative()) this->apriori_->addAllApriori(idset, N_ijk); in N()
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| H A D | scorefNML_tpl.h | 193 const bool informative_external_apriori = this->apriori_->isInformative(); in score_()
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| H A D | scoreAIC_tpl.h | 194 const bool informative_external_apriori = this->apriori_->isInformative(); in score_()
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| /dports/science/agrum/aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320/src/agrum/BN/learning/paramUtils/ |
| H A D | paramEstimatorML_tpl.h | 163 const bool informative_external_apriori = this->external_apriori_->isInformative(); in parameters()
165 = this->score_internal_apriori_->isInformative(); in parameters()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/ |
| H A D | AssemblyBasedCallerUtils.java | 103 final boolean isInformative = bestAllele.isInformative(); in realignReadsToTheirBestHaplotype()
104 …(originalRead, bestHaplotype, refHaplotype, paddedReferenceLoc.getStart(), isInformative, aligner); in realignReadsToTheirBestHaplotype()
417 .filter(ba -> ba.isInformative()).collect(Collectors.toList()); in annotateReadLikelihoodsWithSupportedAlleles()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/allelespecific/ |
| H A D | StrandBiasUtils.java | 98 .filter(ba -> ba.isInformative()) in getStrandCountsFromLikelihoodMap()
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