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/dports/math/adept/adept-2.0.8/include/adept/
H A Dinterp.h34 Index jmin = 0; in interp() local
42 jmin = jmax-1; in interp()
48 Index jmid = jmin + (jmax-jmin)/2; in interp()
58 ans(i) = ((xii-x(jmin))*y(jmax) + (x(jmax)-xii)*y(jmin)) in interp()
66 Index jmin = 0; in interp() local
80 Index jmid = jmin + (jmax-jmin)/2; in interp()
90 ans(i) = ((xii-x(jmin))*y(jmax) + (x(jmax)-xii)*y(jmin)) in interp()
142 Index jmid = jmin + (jmax-jmin)/2; in log_interp()
160 ans(i) = ((xii-x(jmin))*y(jmax) + (x(jmax)-xii)*y(jmin)) in log_interp()
183 Index jmid = jmin + (jmax-jmin)/2; in log_interp()
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/dports/biology/hhsuite/hh-suite-3.3.0/src/
H A Dhhforwardalgorithm.cpp18 int jmin; in forwardAlgorithm() local
64 jmin = 1; in forwardAlgorithm()
73 m_curr[jmin].mm = m_curr[jmin].mi = m_curr[jmin].dg = m_curr[jmin].im = in forwardAlgorithm()
74 m_curr[jmin].gd = 0.0; in forwardAlgorithm()
79 m_curr[jmin].im = m_curr[jmin].gd = 0.0; in forwardAlgorithm()
81 * (m_prev[jmin].mm * q.tr[i - 1][M2M] * t.tr[jmin][M2I] in forwardAlgorithm()
82 + m_prev[jmin].mi * q.tr[i - 1][M2M] * t.tr[jmin][I2I]); in forwardAlgorithm()
89 p_mm.setPosteriorValue(i, jmin, m_curr[jmin].mm); in forwardAlgorithm()
157 jmin = 1; in forwardAlgorithm()
191 int jmin; in forwardAlgorithm() local
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/dports/science/PETSc/petsc-3.14.1/src/mat/impls/sbaij/seq/
H A Dsbaijfact.c678 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_N()
690 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_N()
807 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering()
819 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering()
994 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_2()
1133 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering()
1247 jmin = bi[k]+1; in MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace()
1271 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace()
1406 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering()
1526 jmin = bi[k]+1; in MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace()
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H A Dsbaijfact4.c34 jmin = ai[k]; jmax = ai[k+1]; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
35 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
36 ap = aa + jmin*9; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
37 for (j = jmin; j < jmax; j++) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
90 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
111 j = bj[jmin]; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
125 jmin = bi[k]; jmax = bi[k+1]; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
126 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
127 for (j=jmin; j<jmax; j++) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
138 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering()
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H A Dsbaijfact3.c40 jmin = ai[i]; jmax = ai[i+1]; in MatCholeskyFactorNumeric_SeqSBAIJ_3()
41 for (j=jmin; j<jmax; j++) { in MatCholeskyFactorNumeric_SeqSBAIJ_3()
69 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3()
70 ap = aa + jmin*9; in MatCholeskyFactorNumeric_SeqSBAIJ_3()
124 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3()
145 j = bj[jmin]; in MatCholeskyFactorNumeric_SeqSBAIJ_3()
159 jmin = bi[k]; jmax = bi[k+1]; in MatCholeskyFactorNumeric_SeqSBAIJ_3()
160 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3()
161 for (j=jmin; j<jmax; j++) { in MatCholeskyFactorNumeric_SeqSBAIJ_3()
172 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_3()
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/dports/biology/infernal/infernal-1.1.3/src/
H A Dhmmband.c1580 jmin = cp9b->jmin; in cp9_HMM2ijBands()
1747 jmin[v] = ESL_MIN(jmin[v], jmin[y]); in cp9_HMM2ijBands()
2054 jmin[y] = jmin[v]; in cp9_HMM2ijBands()
2128 jmin[v] = jmin[0]; in cp9_HMM2ijBands()
2134 jmin[0] = ESL_MIN(jmin[0], jmin[v]); in cp9_HMM2ijBands()
3035 jmin = cp9b->jmin; in CMBandsCheckValidParse()
3402 jmin = cp9b->jmin; in cp9_HMM2ijBands_OLD()
4150 jmin[0] = ESL_MIN(jmin[0], jmin[y]); in cp9_HMM2ijBands_OLD()
4159 jmin[0] = ESL_MIN(jmin[0], jmin[y]); in cp9_HMM2ijBands_OLD()
5568 jmin[0] = ESL_MIN(jmin[0], jmin[y]);
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H A Dcm_dpalign.c279 int *jmin = cp9b->jmin; in cm_alignT_hb() local
1124 int *jmin = cp9b->jmin; in cm_CYKInsideAlignHB() local
1311 jn = ESL_MAX(jmin[v], jmin[y]+sdr); in cm_CYKInsideAlignHB()
1387 jn = (jmin[v] > jmin[z]) ? jmin[v] : jmin[z]; in cm_CYKInsideAlignHB()
1795 int *jmin = cp9b->jmin; in cm_InsideAlignHB() local
1951 jn = ESL_MAX(jmin[v], jmin[y]+sdr); in cm_InsideAlignHB()
2017 jn = (jmin[v] > jmin[z]) ? jmin[v] : jmin[z]; in cm_InsideAlignHB()
2533 int *jmin = cp9b->jmin; in cm_OptAccAlignHB() local
2760 jn = (jmin[v] > jmin[z]) ? jmin[v] : jmin[z]; in cm_OptAccAlignHB()
5505 int *jmin = cp9b->jmin; in cm_PostCodeHB() local
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H A Dhmmband.h62 int *pn_max_d, int *imin, int *imax, int *jmin, int *jmax,
88 int *imin, int *imax, int *jmin, int *jmax,
94 int *imin, int *imax, int *jmin, int *jmax);
95 extern void hmm2ij_state_step2_enforce_safe_trans(CM_t *cm, int v, int n, int *imax, int *jmin,
98 extern void hmm2ij_state_step3_enforce_state_delta(CM_t *cm, int v, int *jmin, int *jmax);
101 extern void hmm2ij_state_step5_non_emitter_d0_hack(int v, int imax_v, int *jmin);
106 int *jmin, int *jmax, int debug_level);
108 int *jmin, int *jmax, int **hdmin, int **hdmax,
116 extern void relax_root_bands(int *imin, int *imax, int *jmin, int *jmax);
/dports/cad/calculix/CalculiX/cgx_2.18/src/
H A DsurfMesh2.c36 int imin, jmin; in surfMesh() local
66 jmin = 1; in surfMesh()
72 t[i + jmin * *imax-(*imax+1)] = (double)0.; in surfMesh()
75 for (j = jmin; j <= i__1; ++j) { in surfMesh()
80 jp = jmin + 1; in surfMesh()
82 lj = *jmax - jmin; in surfMesh()
123 t[imin + j * *imax-(*imax+1)] = (double) (j-jmin) / (double) (*jmax-jmin); in surfMesh()
135 t[*imax + j * *imax-(*imax+1)] = (double) (j-jmin) / (double) (*jmax-jmin); in surfMesh()
152 s[i + jmin * *imax-(*imax+1)] /= s[*imax + jmin * *imax-(*imax+1)]; in surfMesh()
190 jmin * *imax-(*imax+1)]) * h1; in surfMesh()
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/dports/biology/molden/molden5.8/
H A Dobin.f6 jmin = 256
14 if (k.lt.jmin.and.k.ne.9.and.k.ne.27) jmin = k
19 if (jmax.gt.126.or.jmin.lt.32) then
40 jmin = 256
57 if (k.lt.jmin.and.k.ne.9.and.k.ne.27) jmin = k
66 if (jmax.gt.126.or.jmin.lt.32) then
/dports/biology/emboss/EMBOSS-6.6.0/nucleus/
H A Dembcom.c68 ajint jmin, ajint jmax,
86 ajint jmin, ajint jmax);
227 jmax-jmin+1); in embComComplexity()
241 NumOfWin,jmin, jmax); in embComComplexity()
397 for(j=jmin;j<=jmax;j++) in comWriteTable()
400 for(j=jmin;j<=jmax;j++) in comWriteTable()
414 for(k=0;k<jmax-jmin+1;k++) in comWriteTable()
419 for(k=0;k<jmax-jmin+1;k++) in comWriteTable()
620 for(j=jmin;j<=jmax;j++) in comElabSeq()
1168 ajint jmin, ajint jmax) in comWinComplex2() argument
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/dports/cad/calculix-ccx/CalculiX/ccx_2.18/src/
H A Danisomaxwavspd.f49 integer i,j,k,im,imin,jm,jmin,iorth local
81 jmin=0
109 jmin=j
122 if((imin.eq.0).and.(jmin.eq.0)) exit
126 xi(0,0)=xi(imin,jmin)
127 et(0,0)=et(imin,jmin)
130 jm=jmin
133 jmin=0
156 jmin=j
H A Dattachline.f28 integer nterms,i,j,k,imin,jmin,im,jm local
43 jmin=0
72 jmin=j
85 if((imin.eq.0).and.(jmin.eq.0)) exit
89 xi(0,0)=xi(imin,jmin)
90 et(0,0)=et(imin,jmin)
93 jm=jmin
96 jmin=0
120 jmin=j
H A Dattach_2d.f27 integer nterms,i,j,k,imin,jmin,im,jm local
40 jmin=0
69 jmin=j
82 if((imin.eq.0).and.(jmin.eq.0)) exit
86 xi(0,0)=xi(imin,jmin)
87 et(0,0)=et(imin,jmin)
90 jm=jmin
93 jmin=0
117 jmin=j
H A Dattach_3d.f28 integer nterms,i,j,k,m,imin,jmin,kmin,im,jm,km,n,loopa local
45 jmin=0
79 jmin=j
95 if((imin.eq.0).and.(jmin.eq.0).and.(kmin.eq.0)) exit
99 xi(0,0,0)=xi(imin,jmin,kmin)
100 et(0,0,0)=et(imin,jmin,kmin)
101 ze(0,0,0)=ze(imin,jmin,kmin)
104 jm=jmin
108 jmin=0
138 jmin=j
/dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/gfortran.dg/c-interop/
H A Dfc-out-descriptor-4.f9015 integer(C_INT), parameter :: imin = 5, imax = 10, jmin = -10, jmax = -1 variable
44 call ctest1 (imin, imax, jmin, jmax, p)
49 if (lbound (p, 2) .ne. jmin) stop 105
51 do j = jmin, jmax
60 allocate (a (jmin:jmax,imin:imax))
62 call ctest2 (imin, imax, jmin, jmax, a)
67 if (lbound (a, 2) .ne. jmin) stop 205
69 do j = jmin, jmax
H A Dfc-out-descriptor-4-c.c7 extern void ctest1 (int imin, int imax, int jmin, int jmax, CFI_cdesc_t *p);
8 extern void ctest2 (int imin, int imax, int jmin, int jmax, CFI_cdesc_t *a);
16 ctest1 (int imin, int imax, int jmin, int jmax, CFI_cdesc_t *p) in ctest1() argument
34 lb[1] = jmin; in ctest1()
43 for (j = jmin; j <= jmax; j++) in ctest1()
55 ctest2 (int imin, int imax, int jmin, int jmax, CFI_cdesc_t *a) in ctest2() argument
78 lb[1] = jmin; in ctest2()
87 for (j = jmin; j <= jmax; j++) in ctest2()
/dports/science/cdo/cdo-2.0.0/src/
H A Dremap_cell_search.cc15 set_srch_add(size_t num_srch_cells, long nx, long imin, long imax, long jmin, long jmax, Varray<siz… in set_srch_add() argument
17 const size_t maxSize = num_srch_cells + (jmax - jmin + 1) * (imax - imin + 1); in set_srch_add()
19 for (long jm = jmin; jm <= jmax; ++jm) in set_srch_add()
40 imin, imax, jmin, jmax, (jmax - jmin + 1) * (imax - imin + 1)); in debug_message()
58 long imin = nxp1, imax = -1, jmin = nyp1, jmax = -1; in getSrchCellsReg2d() local
76 if (debug) debug_message("1", imin, imax, jmin, jmax, src_corner_lon); in getSrchCellsReg2d()
77 num_srch_cells = set_srch_add(num_srch_cells, nx, imin, imax, jmin, jmax, srch_add); in getSrchCellsReg2d()
96 if (debug) debug_message("2", imin2, imax2, jmin, jmax, src_corner_lon); in getSrchCellsReg2d()
97 … num_srch_cells = set_srch_add(num_srch_cells, nx, imin2, imax2, jmin, jmax, srch_add); in getSrchCellsReg2d()
115 if (debug) debug_message("3", imin3, imax3, jmin, jmax, src_corner_lon); in getSrchCellsReg2d()
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/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/argos/
H A Dargos_prep_his.F22 integer i,j,jmin,k,l
29 jmin=0
39 jmin=j
43 if(jmin.gt.0) then
45 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
H A Dargos_prepare_his.F23 integer i,j,jmin,k,l
30 jmin=0
40 jmin=j
44 if(jmin.gt.0) then
46 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/prepar/
H A Dpre_his.F22 integer i,j,jmin,k,l
29 jmin=0
39 jmin=j
43 if(jmin.gt.0) then
45 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
/dports/science/nwchem-data/nwchem-7.0.2-release/src/argos/
H A Dargos_prep_his.F22 integer i,j,jmin,k,l local
29 jmin=0
39 jmin=j
43 if(jmin.gt.0) then
45 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
H A Dargos_prepare_his.F23 integer i,j,jmin,k,l
30 jmin=0
40 jmin=j
44 if(jmin.gt.0) then
46 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
/dports/science/nwchem-data/nwchem-7.0.2-release/src/prepar/
H A Dpre_his.F22 integer i,j,jmin,k,l
29 jmin=0
39 jmin=j
43 if(jmin.gt.0) then
45 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/cd_utils/
H A DcuSeqTreeNj.cpp233 int imin = 0, jmin = 0; in ComputeTree() local
329 jmin = j; in ComputeTree()
338 jdmin = indexMap[jmin]; in ComputeTree()
351 sum_d += ppDists[imin][k] - ppDists[jmin][k]; in ComputeTree()
355 jlen = 0.5*(ppDists[imin][jmin] - sum_d) - internalDistCorrection[jmin]; in ComputeTree()
374 internalDistCorrection[imin] = 0.5*ppDists[imin][jmin]; in ComputeTree()
376 indexMap[jmin] = USED_ROW; in ComputeTree()
394 pSums[jmin] -= ppDists[jmin][k]; in ComputeTree()
395 ppDists[jmin][k] = 0.0; in ComputeTree()
396 pSums[k] -= ppDists[k][jmin]; in ComputeTree()
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