/dports/math/adept/adept-2.0.8/include/adept/ |
H A D | interp.h | 34 Index jmin = 0; in interp() local 42 jmin = jmax-1; in interp() 48 Index jmid = jmin + (jmax-jmin)/2; in interp() 58 ans(i) = ((xii-x(jmin))*y(jmax) + (x(jmax)-xii)*y(jmin)) in interp() 66 Index jmin = 0; in interp() local 80 Index jmid = jmin + (jmax-jmin)/2; in interp() 90 ans(i) = ((xii-x(jmin))*y(jmax) + (x(jmax)-xii)*y(jmin)) in interp() 142 Index jmid = jmin + (jmax-jmin)/2; in log_interp() 160 ans(i) = ((xii-x(jmin))*y(jmax) + (x(jmax)-xii)*y(jmin)) in log_interp() 183 Index jmid = jmin + (jmax-jmin)/2; in log_interp() [all …]
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/dports/biology/hhsuite/hh-suite-3.3.0/src/ |
H A D | hhforwardalgorithm.cpp | 18 int jmin; in forwardAlgorithm() local 64 jmin = 1; in forwardAlgorithm() 73 m_curr[jmin].mm = m_curr[jmin].mi = m_curr[jmin].dg = m_curr[jmin].im = in forwardAlgorithm() 74 m_curr[jmin].gd = 0.0; in forwardAlgorithm() 79 m_curr[jmin].im = m_curr[jmin].gd = 0.0; in forwardAlgorithm() 81 * (m_prev[jmin].mm * q.tr[i - 1][M2M] * t.tr[jmin][M2I] in forwardAlgorithm() 82 + m_prev[jmin].mi * q.tr[i - 1][M2M] * t.tr[jmin][I2I]); in forwardAlgorithm() 89 p_mm.setPosteriorValue(i, jmin, m_curr[jmin].mm); in forwardAlgorithm() 157 jmin = 1; in forwardAlgorithm() 191 int jmin; in forwardAlgorithm() local [all …]
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/dports/science/PETSc/petsc-3.14.1/src/mat/impls/sbaij/seq/ |
H A D | sbaijfact.c | 678 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_N() 690 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_N() 807 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering() 819 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_N_NaturalOrdering() 994 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_2() 1133 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_2_NaturalOrdering() 1247 jmin = bi[k]+1; in MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace() 1271 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_1_inplace() 1406 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering() 1526 jmin = bi[k]+1; in MatCholeskyFactorNumeric_SeqSBAIJ_1_NaturalOrdering_inplace() [all …]
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H A D | sbaijfact4.c | 34 jmin = ai[k]; jmax = ai[k+1]; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() 35 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() 36 ap = aa + jmin*9; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() 37 for (j = jmin; j < jmax; j++) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() 90 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() 111 j = bj[jmin]; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() 125 jmin = bi[k]; jmax = bi[k+1]; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() 126 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() 127 for (j=jmin; j<jmax; j++) { in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() 138 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering() [all …]
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H A D | sbaijfact3.c | 40 jmin = ai[i]; jmax = ai[i+1]; in MatCholeskyFactorNumeric_SeqSBAIJ_3() 41 for (j=jmin; j<jmax; j++) { in MatCholeskyFactorNumeric_SeqSBAIJ_3() 69 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3() 70 ap = aa + jmin*9; in MatCholeskyFactorNumeric_SeqSBAIJ_3() 124 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3() 145 j = bj[jmin]; in MatCholeskyFactorNumeric_SeqSBAIJ_3() 159 jmin = bi[k]; jmax = bi[k+1]; in MatCholeskyFactorNumeric_SeqSBAIJ_3() 160 if (jmin < jmax) { in MatCholeskyFactorNumeric_SeqSBAIJ_3() 161 for (j=jmin; j<jmax; j++) { in MatCholeskyFactorNumeric_SeqSBAIJ_3() 172 il[k] = jmin; in MatCholeskyFactorNumeric_SeqSBAIJ_3() [all …]
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/dports/biology/infernal/infernal-1.1.3/src/ |
H A D | hmmband.c | 1580 jmin = cp9b->jmin; in cp9_HMM2ijBands() 1747 jmin[v] = ESL_MIN(jmin[v], jmin[y]); in cp9_HMM2ijBands() 2054 jmin[y] = jmin[v]; in cp9_HMM2ijBands() 2128 jmin[v] = jmin[0]; in cp9_HMM2ijBands() 2134 jmin[0] = ESL_MIN(jmin[0], jmin[v]); in cp9_HMM2ijBands() 3035 jmin = cp9b->jmin; in CMBandsCheckValidParse() 3402 jmin = cp9b->jmin; in cp9_HMM2ijBands_OLD() 4150 jmin[0] = ESL_MIN(jmin[0], jmin[y]); in cp9_HMM2ijBands_OLD() 4159 jmin[0] = ESL_MIN(jmin[0], jmin[y]); in cp9_HMM2ijBands_OLD() 5568 jmin[0] = ESL_MIN(jmin[0], jmin[y]); [all …]
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H A D | cm_dpalign.c | 279 int *jmin = cp9b->jmin; in cm_alignT_hb() local 1124 int *jmin = cp9b->jmin; in cm_CYKInsideAlignHB() local 1311 jn = ESL_MAX(jmin[v], jmin[y]+sdr); in cm_CYKInsideAlignHB() 1387 jn = (jmin[v] > jmin[z]) ? jmin[v] : jmin[z]; in cm_CYKInsideAlignHB() 1795 int *jmin = cp9b->jmin; in cm_InsideAlignHB() local 1951 jn = ESL_MAX(jmin[v], jmin[y]+sdr); in cm_InsideAlignHB() 2017 jn = (jmin[v] > jmin[z]) ? jmin[v] : jmin[z]; in cm_InsideAlignHB() 2533 int *jmin = cp9b->jmin; in cm_OptAccAlignHB() local 2760 jn = (jmin[v] > jmin[z]) ? jmin[v] : jmin[z]; in cm_OptAccAlignHB() 5505 int *jmin = cp9b->jmin; in cm_PostCodeHB() local [all …]
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H A D | hmmband.h | 62 int *pn_max_d, int *imin, int *imax, int *jmin, int *jmax, 88 int *imin, int *imax, int *jmin, int *jmax, 94 int *imin, int *imax, int *jmin, int *jmax); 95 extern void hmm2ij_state_step2_enforce_safe_trans(CM_t *cm, int v, int n, int *imax, int *jmin, 98 extern void hmm2ij_state_step3_enforce_state_delta(CM_t *cm, int v, int *jmin, int *jmax); 101 extern void hmm2ij_state_step5_non_emitter_d0_hack(int v, int imax_v, int *jmin); 106 int *jmin, int *jmax, int debug_level); 108 int *jmin, int *jmax, int **hdmin, int **hdmax, 116 extern void relax_root_bands(int *imin, int *imax, int *jmin, int *jmax);
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/dports/cad/calculix/CalculiX/cgx_2.18/src/ |
H A D | surfMesh2.c | 36 int imin, jmin; in surfMesh() local 66 jmin = 1; in surfMesh() 72 t[i + jmin * *imax-(*imax+1)] = (double)0.; in surfMesh() 75 for (j = jmin; j <= i__1; ++j) { in surfMesh() 80 jp = jmin + 1; in surfMesh() 82 lj = *jmax - jmin; in surfMesh() 123 t[imin + j * *imax-(*imax+1)] = (double) (j-jmin) / (double) (*jmax-jmin); in surfMesh() 135 t[*imax + j * *imax-(*imax+1)] = (double) (j-jmin) / (double) (*jmax-jmin); in surfMesh() 152 s[i + jmin * *imax-(*imax+1)] /= s[*imax + jmin * *imax-(*imax+1)]; in surfMesh() 190 jmin * *imax-(*imax+1)]) * h1; in surfMesh() [all …]
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/dports/biology/molden/molden5.8/ |
H A D | obin.f | 6 jmin = 256 14 if (k.lt.jmin.and.k.ne.9.and.k.ne.27) jmin = k 19 if (jmax.gt.126.or.jmin.lt.32) then 40 jmin = 256 57 if (k.lt.jmin.and.k.ne.9.and.k.ne.27) jmin = k 66 if (jmax.gt.126.or.jmin.lt.32) then
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/dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
H A D | embcom.c | 68 ajint jmin, ajint jmax, 86 ajint jmin, ajint jmax); 227 jmax-jmin+1); in embComComplexity() 241 NumOfWin,jmin, jmax); in embComComplexity() 397 for(j=jmin;j<=jmax;j++) in comWriteTable() 400 for(j=jmin;j<=jmax;j++) in comWriteTable() 414 for(k=0;k<jmax-jmin+1;k++) in comWriteTable() 419 for(k=0;k<jmax-jmin+1;k++) in comWriteTable() 620 for(j=jmin;j<=jmax;j++) in comElabSeq() 1168 ajint jmin, ajint jmax) in comWinComplex2() argument [all …]
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/dports/cad/calculix-ccx/CalculiX/ccx_2.18/src/ |
H A D | anisomaxwavspd.f | 49 integer i,j,k,im,imin,jm,jmin,iorth local 81 jmin=0 109 jmin=j 122 if((imin.eq.0).and.(jmin.eq.0)) exit 126 xi(0,0)=xi(imin,jmin) 127 et(0,0)=et(imin,jmin) 130 jm=jmin 133 jmin=0 156 jmin=j
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H A D | attachline.f | 28 integer nterms,i,j,k,imin,jmin,im,jm local 43 jmin=0 72 jmin=j 85 if((imin.eq.0).and.(jmin.eq.0)) exit 89 xi(0,0)=xi(imin,jmin) 90 et(0,0)=et(imin,jmin) 93 jm=jmin 96 jmin=0 120 jmin=j
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H A D | attach_2d.f | 27 integer nterms,i,j,k,imin,jmin,im,jm local 40 jmin=0 69 jmin=j 82 if((imin.eq.0).and.(jmin.eq.0)) exit 86 xi(0,0)=xi(imin,jmin) 87 et(0,0)=et(imin,jmin) 90 jm=jmin 93 jmin=0 117 jmin=j
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H A D | attach_3d.f | 28 integer nterms,i,j,k,m,imin,jmin,kmin,im,jm,km,n,loopa local 45 jmin=0 79 jmin=j 95 if((imin.eq.0).and.(jmin.eq.0).and.(kmin.eq.0)) exit 99 xi(0,0,0)=xi(imin,jmin,kmin) 100 et(0,0,0)=et(imin,jmin,kmin) 101 ze(0,0,0)=ze(imin,jmin,kmin) 104 jm=jmin 108 jmin=0 138 jmin=j
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/dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/gfortran.dg/c-interop/ |
H A D | fc-out-descriptor-4.f90 | 15 integer(C_INT), parameter :: imin = 5, imax = 10, jmin = -10, jmax = -1 variable 44 call ctest1 (imin, imax, jmin, jmax, p) 49 if (lbound (p, 2) .ne. jmin) stop 105 51 do j = jmin, jmax 60 allocate (a (jmin:jmax,imin:imax)) 62 call ctest2 (imin, imax, jmin, jmax, a) 67 if (lbound (a, 2) .ne. jmin) stop 205 69 do j = jmin, jmax
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H A D | fc-out-descriptor-4-c.c | 7 extern void ctest1 (int imin, int imax, int jmin, int jmax, CFI_cdesc_t *p); 8 extern void ctest2 (int imin, int imax, int jmin, int jmax, CFI_cdesc_t *a); 16 ctest1 (int imin, int imax, int jmin, int jmax, CFI_cdesc_t *p) in ctest1() argument 34 lb[1] = jmin; in ctest1() 43 for (j = jmin; j <= jmax; j++) in ctest1() 55 ctest2 (int imin, int imax, int jmin, int jmax, CFI_cdesc_t *a) in ctest2() argument 78 lb[1] = jmin; in ctest2() 87 for (j = jmin; j <= jmax; j++) in ctest2()
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/dports/science/cdo/cdo-2.0.0/src/ |
H A D | remap_cell_search.cc | 15 set_srch_add(size_t num_srch_cells, long nx, long imin, long imax, long jmin, long jmax, Varray<siz… in set_srch_add() argument 17 const size_t maxSize = num_srch_cells + (jmax - jmin + 1) * (imax - imin + 1); in set_srch_add() 19 for (long jm = jmin; jm <= jmax; ++jm) in set_srch_add() 40 imin, imax, jmin, jmax, (jmax - jmin + 1) * (imax - imin + 1)); in debug_message() 58 long imin = nxp1, imax = -1, jmin = nyp1, jmax = -1; in getSrchCellsReg2d() local 76 if (debug) debug_message("1", imin, imax, jmin, jmax, src_corner_lon); in getSrchCellsReg2d() 77 num_srch_cells = set_srch_add(num_srch_cells, nx, imin, imax, jmin, jmax, srch_add); in getSrchCellsReg2d() 96 if (debug) debug_message("2", imin2, imax2, jmin, jmax, src_corner_lon); in getSrchCellsReg2d() 97 … num_srch_cells = set_srch_add(num_srch_cells, nx, imin2, imax2, jmin, jmax, srch_add); in getSrchCellsReg2d() 115 if (debug) debug_message("3", imin3, imax3, jmin, jmax, src_corner_lon); in getSrchCellsReg2d() [all …]
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/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/argos/ |
H A D | argos_prep_his.F | 22 integer i,j,jmin,k,l 29 jmin=0 39 jmin=j 43 if(jmin.gt.0) then 45 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
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H A D | argos_prepare_his.F | 23 integer i,j,jmin,k,l 30 jmin=0 40 jmin=j 44 if(jmin.gt.0) then 46 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
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/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/prepar/ |
H A D | pre_his.F | 22 integer i,j,jmin,k,l 29 jmin=0 39 jmin=j 43 if(jmin.gt.0) then 45 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
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/dports/science/nwchem-data/nwchem-7.0.2-release/src/argos/ |
H A D | argos_prep_his.F | 22 integer i,j,jmin,k,l local 29 jmin=0 39 jmin=j 43 if(jmin.gt.0) then 45 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
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H A D | argos_prepare_his.F | 23 integer i,j,jmin,k,l 30 jmin=0 40 jmin=j 44 if(jmin.gt.0) then 46 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
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/dports/science/nwchem-data/nwchem-7.0.2-release/src/prepar/ |
H A D | pre_his.F | 22 integer i,j,jmin,k,l 29 jmin=0 39 jmin=j 43 if(jmin.gt.0) then 45 write(*,10) isgm(i),csa(i),isgm(jmin),csa(jmin),d
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/cd_utils/ |
H A D | cuSeqTreeNj.cpp | 233 int imin = 0, jmin = 0; in ComputeTree() local 329 jmin = j; in ComputeTree() 338 jdmin = indexMap[jmin]; in ComputeTree() 351 sum_d += ppDists[imin][k] - ppDists[jmin][k]; in ComputeTree() 355 jlen = 0.5*(ppDists[imin][jmin] - sum_d) - internalDistCorrection[jmin]; in ComputeTree() 374 internalDistCorrection[imin] = 0.5*ppDists[imin][jmin]; in ComputeTree() 376 indexMap[jmin] = USED_ROW; in ComputeTree() 394 pSums[jmin] -= ppDists[jmin][k]; in ComputeTree() 395 ppDists[jmin][k] = 0.0; in ComputeTree() 396 pSums[k] -= ppDists[k][jmin]; in ComputeTree() [all …]
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