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Searched refs:k_ncells_valid (Results 1 – 3 of 3) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/src/
H A Dcm_dpalign.c865 esl_vec_ISet(shmx->kshadow_mem, shmx->k_ncells_valid, USED_EL); in cm_CYKInsideAlign()
1161 if(shmx->k_ncells_valid > 0) esl_vec_ISet(shmx->kshadow_mem, shmx->k_ncells_valid, 0); in cm_CYKInsideAlignHB()
2225 if(shmx->k_ncells_valid > 0) esl_vec_ISet(shmx->kshadow_mem, shmx->k_ncells_valid, 0); in cm_OptAccAlign()
2563 if(shmx->k_ncells_valid > 0) esl_vec_ISet(shmx->kshadow_mem, shmx->k_ncells_valid, 0); in cm_OptAccAlignHB()
H A Dcm_mx.c1907 mx->k_ncells_valid = 0; in cm_shadow_mx_Create()
2010 mx->k_ncells_valid = k_ncells; in cm_shadow_mx_GrowTo()
2047 assert(k_cur_size == mx->k_ncells_valid); in cm_shadow_mx_GrowTo()
2107 …ncells_alloc: %" PRId64 "\nk_ncells_valid: %" PRId64 "\n", mx->k_ncells_alloc, mx->k_ncells_valid); in cm_shadow_mx_Dump()
2906 mx->k_ncells_valid = 0; in cm_hb_shadow_mx_Create()
3030 mx->k_ncells_valid = k_ncells; in cm_hb_shadow_mx_GrowTo()
3073 ESL_DASSERT1((k_cur_size == mx->k_ncells_valid)); in cm_hb_shadow_mx_GrowTo()
3131 …->M, mx->B, mx->L, mx->y_ncells_alloc, mx->y_ncells_valid, mx->k_ncells_alloc, mx->k_ncells_valid); in cm_hb_shadow_mx_Dump()
H A Dinfernal.h1161 int64_t k_ncells_valid; /* current number of valid cells in kshadow */ member
1241 int64_t k_ncells_valid; /* current number of valid cells in kshadow */ member