Searched refs:kmerOccurence (Results 1 – 7 of 7) sorted by relevance
| /dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-1.2.01/Velvet-1.1.06/ |
| H A D | kmerOccurenceTable.c | 141 KmerOccurence * kmerOccurence; in recordKmerOccurence() local
147 kmerOccurence = table->kmerOccurencePtr++; in recordKmerOccurence()
151 copyKmers(&(kmerOccurence->kmer), kmer); in recordKmerOccurence()
152 kmerOccurence->nodeID = nodeID; in recordKmerOccurence()
153 kmerOccurence->position = position; in recordKmerOccurence()
162 KmerOccurence * kmerOccurence, * previous; in sortKmerOccurenceTable() local
201 kmerOccurence = table->kmerTable; in sortKmerOccurenceTable()
206 if (previous && compareKmerOccurences(kmerOccurence, previous) == 0) in sortKmerOccurenceTable()
207 kmerOccurence->offset = previous->offset + 1; in sortKmerOccurenceTable()
208 previous = kmerOccurence; in sortKmerOccurenceTable()
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| H A D | graphReConstruction.c | 646 KmerOccurence *kmerOccurence; in ghostThreadSequenceThroughGraph() local
742 kmerOccurence = in ghostThreadSequenceThroughGraph()
746 kmerOccurence = in ghostThreadSequenceThroughGraph()
753 kmerOccurence = in ghostThreadSequenceThroughGraph()
757 kmerOccurence = in ghostThreadSequenceThroughGraph()
764 if (kmerOccurence) { in ghostThreadSequenceThroughGraph()
937 kmerOccurence = in threadSequenceThroughGraph()
941 kmerOccurence = in threadSequenceThroughGraph()
948 kmerOccurence = in threadSequenceThroughGraph()
952 kmerOccurence = in threadSequenceThroughGraph()
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| H A D | splayTable.c | 297 …ate readCoord, Coordinate readLength, boolean direct, KmerOccurence * kmerOccurence, IDnum mapCoun… in getMostAppropriateHit() argument
305 if (!getNextKmerOccurence(kmerOccurence)) in getMostAppropriateHit()
306 return kmerOccurence; in getMostAppropriateHit()
313 for (current = kmerOccurence; current; current = getNextKmerOccurence(current)) { in getMostAppropriateHit()
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| /dports/biology/velvet/velvet_1.2.10/src/ |
| H A D | kmerOccurenceTable.c | 141 KmerOccurence * kmerOccurence; in recordKmerOccurence() local
147 kmerOccurence = table->kmerOccurencePtr++; in recordKmerOccurence()
151 copyKmers(&(kmerOccurence->kmer), kmer); in recordKmerOccurence()
152 kmerOccurence->nodeID = nodeID; in recordKmerOccurence()
153 kmerOccurence->position = position; in recordKmerOccurence()
162 KmerOccurence * kmerOccurence, * previous; in sortKmerOccurenceTable() local
201 kmerOccurence = table->kmerTable; in sortKmerOccurenceTable()
206 if (previous && compareKmerOccurences(kmerOccurence, previous) == 0) in sortKmerOccurenceTable()
207 kmerOccurence->offset = previous->offset + 1; in sortKmerOccurenceTable()
208 previous = kmerOccurence; in sortKmerOccurenceTable()
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| H A D | graphReConstruction.c | 742 kmerOccurence = in ghostThreadSequenceThroughGraph()
746 kmerOccurence = in ghostThreadSequenceThroughGraph()
753 kmerOccurence = in ghostThreadSequenceThroughGraph()
757 kmerOccurence = in ghostThreadSequenceThroughGraph()
936 kmerOccurence = in threadSequenceThroughGraph()
940 kmerOccurence = in threadSequenceThroughGraph()
947 kmerOccurence = in threadSequenceThroughGraph()
1289 kmerOccurence = in addReadsToGraph()
1293 kmerOccurence = in addReadsToGraph()
1300 kmerOccurence = in addReadsToGraph()
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| H A D | splayTable.c | 293 …ate readCoord, Coordinate readLength, boolean direct, KmerOccurence * kmerOccurence, IDnum mapCoun… in getMostAppropriateHit() argument
301 if (!getNextKmerOccurence(kmerOccurence)) in getMostAppropriateHit()
302 return kmerOccurence; in getMostAppropriateHit()
309 for (current = kmerOccurence; current; current = getNextKmerOccurence(current)) { in getMostAppropriateHit()
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| /dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-v0.3.1/src/ |
| H A D | graphReConstruction.c | 376 KmerOccurence *kmerOccurence; in ghostThreadSequenceThroughGraph() local
438 kmerOccurence = in ghostThreadSequenceThroughGraph()
442 kmerOccurence = in ghostThreadSequenceThroughGraph()
449 kmerOccurence = in ghostThreadSequenceThroughGraph()
453 kmerOccurence = in ghostThreadSequenceThroughGraph()
460 if (kmerOccurence) { in ghostThreadSequenceThroughGraph()
545 kmerOccurence = in threadSequenceThroughGraph()
549 kmerOccurence = in threadSequenceThroughGraph()
556 kmerOccurence = in threadSequenceThroughGraph()
560 kmerOccurence = in threadSequenceThroughGraph()
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